Guide to the Human Genome
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Name: CCL15 Sequence: fasta or formatted (113aa) NCBI GI: 14602449
Description:

chemokine (C-C motif) ligand 15 precursor

Referenced in:

Chemokines and Their Receptors
Macrophages and Monocytes

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             7.1          8           2
 C cysteine            6.2          7           2
 D aspartate           2.7          3           1
 E glutamate           4.4          5           1
 F phenylalanine       4.4          5           1
 G glycine             4.4          5           1
 H histidine           0.9          1           1
 I isoleucine          4.4          5           1
 K lysine              8.8         10           2
 L leucine             9.7         11           1
 M methionine          5.3          6           2
 N asparagine          2.7          3           1
 P proline             6.2          7           1
 Q glutamine           4.4          5           1
 R arginine            0.9          1           1
 S serine             13.3         15           2
 T threonine           3.5          4           1
 V valine              8.0          9           2
 W tryptophan          0.0          0           0
 Y tyrosine            2.7          3           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   chemokine (C-C motif) ligand 15 precursor 
CCL23                 0.657   small inducible cytokine A23 isoform CKbeta8 precurs...
CCL23                 0.608   small inducible cytokine A23 isoform CKbeta8-1 precu...
CCL14                 0.265   chemokine (C-C motif) ligand 14 isoform 2 precursor ...
CCL3L1                0.250   chemokine (C-C motif) ligand 3-like 1 precursor [Hom...
CCL3L3                0.250   chemokine (C-C motif) ligand 3-like 3 precursor [Hom...
CCL3                  0.245   chemokine (C-C motif) ligand 3 
CCL14                 0.230   chemokine (C-C motif) ligand 14 isoform 1 precursor ...
CCL4L1                0.196   chemokine (C-C motif) ligand 4-like 1 precursor [Hom...
CCL4L2                0.196   chemokine (C-C motif) ligand 4-like 2 precursor [Hom...
CCL4                  0.191   chemokine C-C motif ligand 4 isoform 1 precursor [Hom...
CCL5                  0.186   small inducible cytokine A5 precursor 
CCL18                 0.181   small inducible cytokine A18 precursor 
CCL13                 0.147   small inducible cytokine A13 precursor 
CCL17                 0.147   small inducible cytokine A17 precursor 
CCL7                  0.147   chemokine (C-C motif) ligand 7 precursor 
CCL8                  0.147   small inducible cytokine A8 precursor 
CCL22                 0.137   small inducible cytokine A22 precursor 
CCL16                 0.132   small inducible cytokine A16 precursor 
CCL26                 0.132   chemokine (C-C motif) ligand 26 precursor 
CCL24                 0.123   small inducible cytokine A24 precursor 
CCL2                  0.118   small inducible cytokine A2 precursor 
CCL19                 0.108   small inducible cytokine A19 precursor 
CCL11                 0.103   small inducible cytokine A11 precursor 
CCL1                  0.103   small inducible cytokine A1 precursor 
CCL21                 0.093   small inducible cytokine A21 precursor 
XCL1                  0.093   chemokine (C motif) ligand 1 
XCL2                  0.093   chemokine (C motif) ligand 2 
CX3CL1                0.059   chemokine (C-X3-C motif) ligand 1 
CXCL6                 0.034   chemokine (C-X-C motif) ligand 6 (granulocyte chemota...
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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