Guide to the Human Genome
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Name: CCL2 Sequence: fasta or formatted (99aa) NCBI GI: 4506841
Description:

small inducible cytokine A2 precursor

Referenced in:

Chemokines and Their Receptors
Macrophages and Monocytes

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine            11.1         11           2
 C cysteine            5.1          5           2
 D aspartate           5.1          5           1
 E glutamate           2.0          2           1
 F phenylalanine       3.0          3           1
 G glycine             1.0          1           1
 H histidine           1.0          1           1
 I isoleucine          8.1          8           1
 K lysine             10.1         10           1
 L leucine             8.1          8           3
 M methionine          2.0          2           1
 N asparagine          3.0          3           1
 P proline             6.1          6           1
 Q glutamine           7.1          7           1
 R arginine            4.0          4           2
 S serine              6.1          6           2
 T threonine           8.1          8           1
 V valine              6.1          6           1
 W tryptophan          1.0          1           1
 Y tyrosine            2.0          2           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   small inducible cytokine A2 precursor 
CCL7                  0.701   chemokine (C-C motif) ligand 7 precursor 
CCL8                  0.678   small inducible cytokine A8 precursor 
CCL11                 0.650   small inducible cytokine A11 precursor 
CCL13                 0.616   small inducible cytokine A13 precursor 
CCL3L1                0.266   chemokine (C-C motif) ligand 3-like 1 precursor [Hom...
CCL3L3                0.266   chemokine (C-C motif) ligand 3-like 3 precursor [Hom...
CCL4                  0.254   chemokine C-C motif ligand 4 isoform 1 precursor [Hom...
CCL4L1                0.249   chemokine (C-C motif) ligand 4-like 1 precursor [Hom...
CCL4L2                0.249   chemokine (C-C motif) ligand 4-like 2 precursor [Hom...
CCL3                  0.220   chemokine (C-C motif) ligand 3 
CCL24                 0.209   small inducible cytokine A24 precursor 
CCL5                  0.186   small inducible cytokine A5 precursor 
CCL21                 0.169   small inducible cytokine A21 precursor 
CCL14                 0.153   chemokine (C-C motif) ligand 14 isoform 1 precursor ...
CCL16                 0.153   small inducible cytokine A16 precursor 
CCL14                 0.147   chemokine (C-C motif) ligand 14 isoform 2 precursor ...
CX3CL1                0.141   chemokine (C-X3-C motif) ligand 1 
CCL15                 0.136   chemokine (C-C motif) ligand 15 precursor 
CCL26                 0.136   chemokine (C-C motif) ligand 26 precursor 
CCL22                 0.124   small inducible cytokine A22 precursor 
CCL18                 0.124   small inducible cytokine A18 precursor 
CCL1                  0.124   small inducible cytokine A1 precursor 
CCL23                 0.113   small inducible cytokine A23 isoform CKbeta8 precurs...
CCL17                 0.107   small inducible cytokine A17 precursor 
CCL23                 0.102   small inducible cytokine A23 isoform CKbeta8-1 precu...
XCL1                  0.096   chemokine (C motif) ligand 1 
XCL2                  0.096   chemokine (C motif) ligand 2 
CCL20                 0.090   chemokine (C-C motif) ligand 20 isoform 2 
CCL20                 0.090   chemokine (C-C motif) ligand 20 isoform 1 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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