Guide to the Human Genome
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Name: CCL7 Sequence: fasta or formatted (99aa) NCBI GI: 13435402
Description:

chemokine (C-C motif) ligand 7 precursor

Referenced in:

Chemokines and Their Receptors

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             9.1          9           3
 C cysteine            5.1          5           2
 D aspartate           4.0          4           1
 E glutamate           3.0          3           1
 F phenylalanine       4.0          4           1
 G glycine             2.0          2           1
 H histidine           2.0          2           1
 I isoleucine          5.1          5           1
 K lysine             12.1         12           2
 L leucine            10.1         10           3
 M methionine          2.0          2           1
 N asparagine          2.0          2           1
 P proline             6.1          6           1
 Q glutamine           6.1          6           1
 R arginine            5.1          5           2
 S serine              6.1          6           2
 T threonine          10.1         10           2
 V valine              3.0          3           1
 W tryptophan          1.0          1           1
 Y tyrosine            2.0          2           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   chemokine (C-C motif) ligand 7 precursor 
CCL2                  0.689   small inducible cytokine A2 precursor 
CCL11                 0.622   small inducible cytokine A11 precursor 
CCL8                  0.606   small inducible cytokine A8 precursor 
CCL13                 0.578   small inducible cytokine A13 precursor 
CCL4                  0.294   chemokine C-C motif ligand 4 isoform 1 precursor [Hom...
CCL4L1                0.289   chemokine (C-C motif) ligand 4-like 1 precursor [Hom...
CCL4L2                0.289   chemokine (C-C motif) ligand 4-like 2 precursor [Hom...
CCL3L1                0.278   chemokine (C-C motif) ligand 3-like 1 precursor [Hom...
CCL3L3                0.278   chemokine (C-C motif) ligand 3-like 3 precursor [Hom...
CCL5                  0.239   small inducible cytokine A5 precursor 
CCL16                 0.239   small inducible cytokine A16 precursor 
CCL24                 0.233   small inducible cytokine A24 precursor 
CCL3                  0.233   chemokine (C-C motif) ligand 3 
CCL14                 0.194   chemokine (C-C motif) ligand 14 isoform 1 precursor ...
CCL26                 0.189   chemokine (C-C motif) ligand 26 precursor 
CCL14                 0.178   chemokine (C-C motif) ligand 14 isoform 2 precursor ...
CCL21                 0.178   small inducible cytokine A21 precursor 
CCL18                 0.178   small inducible cytokine A18 precursor 
CCL15                 0.167   chemokine (C-C motif) ligand 15 precursor 
CCL1                  0.156   small inducible cytokine A1 precursor 
CCL22                 0.150   small inducible cytokine A22 precursor 
CCL17                 0.150   small inducible cytokine A17 precursor 
CCL23                 0.139   small inducible cytokine A23 isoform CKbeta8 precurs...
CX3CL1                0.133   chemokine (C-X3-C motif) ligand 1 
CCL23                 0.133   small inducible cytokine A23 isoform CKbeta8-1 precu...
XCL1                  0.128   chemokine (C motif) ligand 1 
XCL2                  0.128   chemokine (C motif) ligand 2 
CCL20                 0.083   chemokine (C-C motif) ligand 20 isoform 2 
CCL20                 0.083   chemokine (C-C motif) ligand 20 isoform 1 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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