Guide to the Human Genome
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Name: CCL8 Sequence: fasta or formatted (99aa) NCBI GI: 22538816
Description:

small inducible cytokine A8 precursor

Referenced in:

Chemokines and Their Receptors
Macrophages and Monocytes

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             7.1          7           2
 C cysteine            5.1          5           2
 D aspartate           4.0          4           1
 E glutamate           4.0          4           1
 F phenylalanine       4.0          4           1
 G glycine             2.0          2           1
 H histidine           1.0          1           1
 I isoleucine          9.1          9           1
 K lysine              9.1          9           1
 L leucine             9.1          9           3
 M methionine          3.0          3           1
 N asparagine          4.0          4           1
 P proline             7.1          7           1
 Q glutamine           6.1          6           1
 R arginine            6.1          6           1
 S serine              6.1          6           1
 T threonine           5.1          5           1
 V valine              6.1          6           1
 W tryptophan          1.0          1           1
 Y tyrosine            1.0          1           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   small inducible cytokine A8 precursor 
CCL2                  0.674   small inducible cytokine A2 precursor 
CCL11                 0.635   small inducible cytokine A11 precursor 
CCL7                  0.612   chemokine (C-C motif) ligand 7 precursor 
CCL13                 0.590   small inducible cytokine A13 precursor 
CCL3L1                0.281   chemokine (C-C motif) ligand 3-like 1 precursor [Hom...
CCL3L3                0.281   chemokine (C-C motif) ligand 3-like 3 precursor [Hom...
CCL4L1                0.270   chemokine (C-C motif) ligand 4-like 1 precursor [Hom...
CCL4L2                0.270   chemokine (C-C motif) ligand 4-like 2 precursor [Hom...
CCL4                  0.258   chemokine C-C motif ligand 4 isoform 1 precursor [Hom...
CCL24                 0.236   small inducible cytokine A24 precursor 
CCL3                  0.219   chemokine (C-C motif) ligand 3 
CCL5                  0.219   small inducible cytokine A5 precursor 
CCL14                 0.213   chemokine (C-C motif) ligand 14 isoform 1 precursor ...
CCL14                 0.208   chemokine (C-C motif) ligand 14 isoform 2 precursor ...
CCL16                 0.197   small inducible cytokine A16 precursor 
CCL15                 0.169   chemokine (C-C motif) ligand 15 precursor 
CCL1                  0.169   small inducible cytokine A1 precursor 
CX3CL1                0.163   chemokine (C-X3-C motif) ligand 1 
CCL22                 0.157   small inducible cytokine A22 precursor 
CCL26                 0.157   chemokine (C-C motif) ligand 26 precursor 
XCL1                  0.152   chemokine (C motif) ligand 1 
XCL2                  0.152   chemokine (C motif) ligand 2 
CCL23                 0.152   small inducible cytokine A23 isoform CKbeta8 precurs...
CCL18                 0.152   small inducible cytokine A18 precursor 
CCL21                 0.152   small inducible cytokine A21 precursor 
CCL17                 0.140   small inducible cytokine A17 precursor 
CCL23                 0.140   small inducible cytokine A23 isoform CKbeta8-1 precu...
CCL20                 0.107   chemokine (C-C motif) ligand 20 isoform 1 
CCL20                 0.101   chemokine (C-C motif) ligand 20 isoform 2 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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