Guide to the Human Genome
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Name: CCL19 Sequence: fasta or formatted (98aa) NCBI GI: 5454040
Description:

small inducible cytokine A19 precursor

Referenced in:

Chemokines and Their Receptors

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             7.1          7           1
 C cysteine            4.1          4           2
 D aspartate           4.1          4           1
 E glutamate           2.0          2           1
 F phenylalanine       2.0          2           1
 G glycine             4.1          4           1
 H histidine           1.0          1           1
 I isoleucine          5.1          5           2
 K lysine              4.1          4           1
 L leucine            14.3         14           3
 M methionine          2.0          2           1
 N asparagine          2.0          2           1
 P proline             8.2          8           2
 Q glutamine           5.1          5           1
 R arginine            9.2          9           2
 S serine              7.1          7           2
 T threonine           7.1          7           2
 V valine              7.1          7           2
 W tryptophan          2.0          2           1
 Y tyrosine            2.0          2           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   small inducible cytokine A19 precursor 
CCL21                 0.226   small inducible cytokine A21 precursor 
CCL3L1                0.169   chemokine (C-C motif) ligand 3-like 1 precursor [Hom...
CCL3L3                0.169   chemokine (C-C motif) ligand 3-like 3 precursor [Hom...
CCL5                  0.164   small inducible cytokine A5 precursor 
CCL26                 0.158   chemokine (C-C motif) ligand 26 precursor 
CCL4                  0.147   chemokine C-C motif ligand 4 isoform 1 precursor [Hom...
CCL4L1                0.141   chemokine (C-C motif) ligand 4-like 1 precursor [Hom...
CCL4L2                0.141   chemokine (C-C motif) ligand 4-like 2 precursor [Hom...
CCL22                 0.141   small inducible cytokine A22 precursor 
CCL20                 0.136   chemokine (C-C motif) ligand 20 isoform 2 
CCL3                  0.136   chemokine (C-C motif) ligand 3 
CCL20                 0.130   chemokine (C-C motif) ligand 20 isoform 1 
CCL16                 0.124   small inducible cytokine A16 precursor 
CCL15                 0.124   chemokine (C-C motif) ligand 15 precursor 
CCL18                 0.124   small inducible cytokine A18 precursor 
CCL24                 0.113   small inducible cytokine A24 precursor 
CCL13                 0.107   small inducible cytokine A13 precursor 
CCL23                 0.107   small inducible cytokine A23 isoform CKbeta8 precurs...
CCL23                 0.107   small inducible cytokine A23 isoform CKbeta8-1 precu...
CCL17                 0.096   small inducible cytokine A17 precursor 
CCL14                 0.096   chemokine (C-C motif) ligand 14 isoform 1 precursor ...
CCL8                  0.085   small inducible cytokine A8 precursor 
CCL7                  0.085   chemokine (C-C motif) ligand 7 precursor 
CCL14                 0.085   chemokine (C-C motif) ligand 14 isoform 2 precursor ...
CXCL5                 0.085   chemokine (C-X-C motif) ligand 5 precursor 
CCL11                 0.085   small inducible cytokine A11 precursor 
XCL1                  0.085   chemokine (C motif) ligand 1 
XCL2                  0.079   chemokine (C motif) ligand 2 
CX3CL1                0.068   chemokine (C-X3-C motif) ligand 1 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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