Guide to the Human Genome
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Name: CCL11 Sequence: fasta or formatted (97aa) NCBI GI: 4506827
Description:

small inducible cytokine A11 precursor

Referenced in:

Chemokines and Their Receptors
Neutrophils, Eosinophils, and Basophils

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine            11.3         11           3
 C cysteine            4.1          4           2
 D aspartate           4.1          4           1
 E glutamate           1.0          1           1
 F phenylalanine       3.1          3           1
 G glycine             3.1          3           1
 H histidine           0.0          0           0
 I isoleucine          5.2          5           1
 K lysine             13.4         13           3
 L leucine            11.3         11           3
 M methionine          2.1          2           1
 N asparagine          2.1          2           1
 P proline             9.3          9           1
 Q glutamine           5.2          5           1
 R arginine            4.1          4           2
 S serine              7.2          7           1
 T threonine           5.2          5           2
 V valine              4.1          4           1
 W tryptophan          2.1          2           1
 Y tyrosine            2.1          2           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   small inducible cytokine A11 precursor 
CCL2                  0.657   small inducible cytokine A2 precursor 
CCL8                  0.646   small inducible cytokine A8 precursor 
CCL7                  0.640   chemokine (C-C motif) ligand 7 precursor 
CCL13                 0.560   small inducible cytokine A13 precursor 
CCL4                  0.269   chemokine C-C motif ligand 4 isoform 1 precursor [Hom...
CCL5                  0.263   small inducible cytokine A5 precursor 
CCL4L1                0.263   chemokine (C-C motif) ligand 4-like 1 precursor [Hom...
CCL4L2                0.263   chemokine (C-C motif) ligand 4-like 2 precursor [Hom...
CCL3L1                0.251   chemokine (C-C motif) ligand 3-like 1 precursor [Hom...
CCL3L3                0.251   chemokine (C-C motif) ligand 3-like 3 precursor [Hom...
CCL24                 0.229   small inducible cytokine A24 precursor 
CCL3                  0.229   chemokine (C-C motif) ligand 3 
CCL26                 0.194   chemokine (C-C motif) ligand 26 precursor 
CCL14                 0.189   chemokine (C-C motif) ligand 14 isoform 1 precursor ...
CCL21                 0.177   small inducible cytokine A21 precursor 
CCL14                 0.171   chemokine (C-C motif) ligand 14 isoform 2 precursor ...
XCL1                  0.160   chemokine (C motif) ligand 1 
XCL2                  0.154   chemokine (C motif) ligand 2 
CCL16                 0.154   small inducible cytokine A16 precursor 
CCL18                 0.143   small inducible cytokine A18 precursor 
CCL1                  0.143   small inducible cytokine A1 precursor 
CX3CL1                0.143   chemokine (C-X3-C motif) ligand 1 
CCL17                 0.137   small inducible cytokine A17 precursor 
CCL23                 0.137   small inducible cytokine A23 isoform CKbeta8-1 precu...
CCL22                 0.126   small inducible cytokine A22 precursor 
CCL15                 0.120   chemokine (C-C motif) ligand 15 precursor 
CCL23                 0.114   small inducible cytokine A23 isoform CKbeta8 precurs...
CXCL13                0.109   chemokine (C-X-C motif) ligand 13 (B-cell chemoattrac...
CCL19                 0.086   small inducible cytokine A19 precursor 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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