Guide to the Human Genome
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Name: CCL17 Sequence: fasta or formatted (94aa) NCBI GI: 4506829
Description:

small inducible cytokine A17 precursor

Referenced in:

Chemokines and Their Receptors

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             9.6          9           2
 C cysteine            4.3          4           2
 D aspartate           3.2          3           1
 E glutamate           4.3          4           1
 F phenylalanine       2.1          2           1
 G glycine             5.3          5           1
 H histidine           2.1          2           1
 I isoleucine          4.3          4           1
 K lysine              7.4          7           1
 L leucine            12.8         12           3
 M methionine          2.1          2           1
 N asparagine          4.3          4           2
 P proline             3.2          3           1
 Q glutamine           4.3          4           1
 R arginine            7.4          7           1
 S serine              6.4          6           1
 T threonine           5.3          5           1
 V valine              7.4          7           1
 W tryptophan          1.1          1           1
 Y tyrosine            3.2          3           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   small inducible cytokine A17 precursor 
CCL14                 0.223   chemokine (C-C motif) ligand 14 isoform 1 precursor ...
CCL23                 0.211   small inducible cytokine A23 isoform CKbeta8-1 precu...
CCL26                 0.205   chemokine (C-C motif) ligand 26 precursor 
CCL16                 0.187   small inducible cytokine A16 precursor 
CCL23                 0.181   small inducible cytokine A23 isoform CKbeta8 precurs...
CCL15                 0.181   chemokine (C-C motif) ligand 15 precursor 
CCL14                 0.181   chemokine (C-C motif) ligand 14 isoform 2 precursor ...
CCL3L1                0.175   chemokine (C-C motif) ligand 3-like 1 precursor [Hom...
CCL3L3                0.175   chemokine (C-C motif) ligand 3-like 3 precursor [Hom...
CCL13                 0.169   small inducible cytokine A13 precursor 
CCL22                 0.163   small inducible cytokine A22 precursor 
CCL7                  0.163   chemokine (C-C motif) ligand 7 precursor 
CCL5                  0.163   small inducible cytokine A5 precursor 
CCL3                  0.157   chemokine (C-C motif) ligand 3 
CCL18                 0.157   small inducible cytokine A18 precursor 
CCL4L1                0.151   chemokine (C-C motif) ligand 4-like 1 precursor [Hom...
CCL4L2                0.151   chemokine (C-C motif) ligand 4-like 2 precursor [Hom...
CCL8                  0.151   small inducible cytokine A8 precursor 
CCL11                 0.145   small inducible cytokine A11 precursor 
CCL4                  0.139   chemokine C-C motif ligand 4 isoform 1 precursor [Hom...
CCL2                  0.114   small inducible cytokine A2 precursor 
CCL24                 0.114   small inducible cytokine A24 precursor 
CCL19                 0.102   small inducible cytokine A19 precursor 
CX3CL1                0.078   chemokine (C-X3-C motif) ligand 1 
XCL2                  0.072   chemokine (C motif) ligand 2 
XCL1                  0.066   chemokine (C motif) ligand 1 
CCL1                  0.066   small inducible cytokine A1 precursor 
CCL21                 0.060   small inducible cytokine A21 precursor 
CCL20                 0.042   chemokine (C-C motif) ligand 20 isoform 1 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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