Guide to the Human Genome
Home | Table of Contents | Search text | Search genes | Search sequences | Purchase | FAQ | Blog | Help
Name: CCL3 Sequence: fasta or formatted (92aa) NCBI GI: 4506843
Description:

chemokine (C-C motif) ligand 3

Referenced in:

Chemokines and Their Receptors
Neutrophils, Eosinophils, and Basophils

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine            12.0         11           2
 C cysteine            6.5          6           2
 D aspartate           4.3          4           1
 E glutamate           4.3          4           2
 F phenylalanine       5.4          5           1
 G glycine             1.1          1           1
 H histidine           0.0          0           0
 I isoleucine          3.3          3           1
 K lysine              3.3          3           1
 L leucine             8.7          8           2
 M methionine          2.2          2           1
 N asparagine          2.2          2           1
 P proline             4.3          4           1
 Q glutamine           7.6          7           1
 R arginine            3.3          3           1
 S serine             13.0         12           2
 T threonine           7.6          7           1
 V valine              6.5          6           1
 W tryptophan          1.1          1           1
 Y tyrosine            3.3          3           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   chemokine (C-C motif) ligand 3 
CCL3L1                0.926   chemokine (C-C motif) ligand 3-like 1 precursor [Hom...
CCL3L3                0.926   chemokine (C-C motif) ligand 3-like 3 precursor [Hom...
CCL4                  0.580   chemokine C-C motif ligand 4 isoform 1 precursor [Hom...
CCL4L1                0.568   chemokine (C-C motif) ligand 4-like 1 precursor [Hom...
CCL4L2                0.568   chemokine (C-C motif) ligand 4-like 2 precursor [Hom...
CCL18                 0.549   small inducible cytokine A18 precursor 
CCL5                  0.475   small inducible cytokine A5 precursor 
CCL14                 0.426   chemokine (C-C motif) ligand 14 isoform 1 precursor ...
CCL14                 0.395   chemokine (C-C motif) ligand 14 isoform 2 precursor ...
CCL23                 0.340   small inducible cytokine A23 isoform CKbeta8 precurs...
CCL23                 0.315   small inducible cytokine A23 isoform CKbeta8-1 precu...
CCL15                 0.309   chemokine (C-C motif) ligand 15 precursor 
CCL26                 0.296   chemokine (C-C motif) ligand 26 precursor 
CCL13                 0.290   small inducible cytokine A13 precursor 
CCL16                 0.284   small inducible cytokine A16 precursor 
CCL24                 0.259   small inducible cytokine A24 precursor 
CCL7                  0.259   chemokine (C-C motif) ligand 7 precursor 
CCL11                 0.247   small inducible cytokine A11 precursor 
CCL2                  0.241   small inducible cytokine A2 precursor 
CCL8                  0.241   small inducible cytokine A8 precursor 
CCL1                  0.191   small inducible cytokine A1 precursor 
CCL22                 0.191   small inducible cytokine A22 precursor 
CCL17                 0.160   small inducible cytokine A17 precursor 
CCL21                 0.154   small inducible cytokine A21 precursor 
CCL19                 0.148   small inducible cytokine A19 precursor 
CCL20                 0.117   chemokine (C-C motif) ligand 20 isoform 1 
XCL1                  0.117   chemokine (C motif) ligand 1 
XCL2                  0.117   chemokine (C motif) ligand 2 
CCL20                 0.111   chemokine (C-C motif) ligand 20 isoform 2 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


Home | Table of Contents | Search text | Search genes | Search sequences | Purchase | FAQ | Blog | Help

Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

CSHL Press