PCDH15 13778

Name: PCDH15	Sequence: fasta or formatted (1886aa)		NCBI GI: 218505779
Description: protocadherin 15 isoform CD1-6 precursor		Referenced in: Cadherins and Related Proteins Auditory and Vestibular Functions
Other entries for this name: alt prot [1955aa] protocadherin 15 isoform CD1-4 precursor alt prot [1962aa] protocadherin 15 isoform CD1-1 precursor alt prot [1957aa] protocadherin 15 isoform CD1-2 precursor alt prot [1952aa] protocadherin 15 isoform CD1-7 precursor alt prot [1915aa] protocadherin 15 isoform CD1-8 precursor alt prot [1935aa] protocadherin 15 isoform CD1-9 precursor alt prot [1790aa] protocadherin 15 isoform CD2-1 precursor alt prot [1539aa] protocadherin 15 isoform CD2-2 precursor alt prot [1682aa] protocadherin 15 isoform CD3-1 precursor alt prot [1677aa] protocadherin 15 isoform CD3-2 precursor alt prot [1932aa] protocadherin 15 isoform CD1-10 precursor
Composition: Amino acid Percentage Count Longest homopolymer A alanine 5.8 110 3 C cysteine 1.2 23 2 D aspartate 6.1 115 3 E glutamate 6.3 119 3 F phenylalanine 3.8 72 2 G glycine 5.1 97 2 H histidine 1.6 30 1 I isoleucine 6.9 131 3 K lysine 4.1 78 2 L leucine 8.4 158 2 M methionine 1.7 32 1 N asparagine 5.0 94 2 P proline 9.1 171 9 Q glutamine 3.6 68 2 R arginine 4.7 89 2 S serine 7.4 139 3 T threonine 7.7 145 5 V valine 7.8 148 3 W tryptophan 0.2 4 1 Y tyrosine 3.3 63 2			Comparative genomics: Search single species RefSeq proteins at NCBI H. sapiens M. musculus D. rerio C. intestinalis S. purpuratus D. melanogaster C. elegans A. thaliana S. cerevisiae E. coli W3110 A. pernix K1 Search summary Figure data Additional searches of RefSeq proteins at NCBI All Eukaryotes Bacteria Archaea Viruses Primates Mammals Vertebrates
Related human proteins: Protein Relative score Description Self-match 1.000 protocadherin 15 isoform CD1-6 precursor PCDH15 0.959 protocadherin 15 isoform CD1-2 precursor PCDH15 0.957 protocadherin 15 isoform CD1-1 precursor PCDH15 0.956 protocadherin 15 isoform CD1-4 precursor PCDH15 0.953 protocadherin 15 isoform CD1-7 precursor PCDH15 0.944 protocadherin 15 isoform CD1-9 precursor PCDH15 0.941 protocadherin 15 isoform CD1-10 precursor PCDH15 0.928 protocadherin 15 isoform CD1-8 precursor PCDH15 0.688 protocadherin 15 isoform CD3-2 precursor PCDH15 0.688 protocadherin 15 isoform CD2-2 precursor PCDH15 0.686 protocadherin 15 isoform CD3-1 precursor PCDH15 0.684 protocadherin 15 isoform CD2-1 precursor FAT4 0.075 FAT tumor suppressor homolog 4 CDH23 0.069 cadherin-like 23 isoform 1 precursor CELSR2 0.068 cadherin EGF LAG seven-pass G-type receptor 2 FAT3 0.066 FAT tumor suppressor homolog 3 FAT1 0.065 FAT tumor suppressor 1 precursor DCHS2 0.064 dachsous 2 isoform 1 FAT2 0.061 FAT tumor suppressor 2 precursor CELSR1 0.060 cadherin EGF LAG seven-pass G-type receptor 1 DCHS1 0.059 dachsous 1 precursor CELSR3 0.054 cadherin EGF LAG seven-pass G-type receptor 3 [Homo... PCDH9 0.047 protocadherin 9 isoform 2 precursor PCDH9 0.047 protocadherin 9 isoform 1 precursor PCDHAC2 0.045 protocadherin alpha subfamily C, 2 isoform 1 precurso... PCDHAC2 0.045 protocadherin alpha subfamily C, 2 isoform 2 precurs... PCDH19 0.045 protocadherin 19 isoform a PCDH19 0.045 protocadherin 19 isoform b DCHS2 0.044 dachsous 2 isoform 2 PCDHGB4 0.044 protocadherin gamma subfamily B, 4 isoform 2 precurs... Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.