Guide to the Human Genome
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Name: DCHS2 Sequence: fasta or formatted (709aa) NCBI GI: 216548395
Description:

dachsous 2 isoform 3

Referenced in:

Cadherins and Related Proteins

Other entries for this name:
alt prot [1369aa] dachsous 2 isoform 2
alt prot [2916aa] dachsous 2 isoform 1
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             9.6         68           3
 C cysteine            1.0          7           1
 D aspartate           7.8         55           2
 E glutamate           6.8         48           2
 F phenylalanine       3.1         22           2
 G glycine             8.7         62           3
 H histidine           2.1         15           1
 I isoleucine          2.4         17           2
 K lysine              1.7         12           1
 L leucine            11.6         82           4
 M methionine          0.6          4           1
 N asparagine          2.0         14           1
 P proline             7.2         51           2
 Q glutamine           4.5         32           3
 R arginine            7.5         53           2
 S serine              7.6         54           3
 T threonine           3.8         27           1
 V valine              9.2         65           2
 W tryptophan          1.4         10           1
 Y tyrosine            1.6         11           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   dachsous 2 isoform 3 
DCHS2                 0.968   dachsous 2 isoform 2 
DCHS1                 0.268   dachsous 1 precursor 
PCDH17                0.170   protocadherin 17 precursor 
PCDHAC2               0.170   protocadherin alpha subfamily C, 2 isoform 1 precurso...
PCDHAC2               0.170   protocadherin alpha subfamily C, 2 isoform 2 precurs...
PCDHGC4               0.162   protocadherin gamma subfamily C, 4 isoform 2 precurs...
PCDHGC4               0.162   protocadherin gamma subfamily C, 4 isoform 1 precurs...
PCDHGA1               0.162   protocadherin gamma subfamily A, 1 isoform 1 precurs...
PCDHGA1               0.162   protocadherin gamma subfamily A, 1 isoform 2 precurs...
PCDHGA10              0.159   protocadherin gamma subfamily A, 10 isoform 1 precur...
PCDHGA10              0.159   protocadherin gamma subfamily A, 10 isoform 2 precur...
PCDH10                0.158   protocadherin 10 isoform 1 precursor 
PCDH10                0.158   protocadherin 10 isoform 2 precursor 
PCDH19                0.155   protocadherin 19 isoform a 
PCDH19                0.155   protocadherin 19 isoform b 
PCDHGA8               0.155   protocadherin gamma subfamily A, 8 isoform 1 precurs...
PCDHGA8               0.155   protocadherin gamma subfamily A, 8 isoform 2 precurso...
PCDHGC3               0.154   protocadherin gamma subfamily C, 3 isoform 2 precurs...
PCDHGC3               0.154   protocadherin gamma subfamily C, 3 isoform 1 precurs...
PCDHGB5               0.154   protocadherin gamma subfamily B, 5 isoform 2 precurs...
PCDHGB5               0.154   protocadherin gamma subfamily B, 5 isoform 1 precurs...
PCDHGA3               0.154   protocadherin gamma subfamily A, 3 isoform 1 precurs...
PCDHGA3               0.154   protocadherin gamma subfamily A, 3 isoform 2 precurs...
PCDHGA11              0.154   protocadherin gamma subfamily A, 11 isoform 2 precur...
PCDHGA11              0.154   protocadherin gamma subfamily A, 11 isoform 1 precur...
PCDHGA11              0.154   protocadherin gamma subfamily A, 11 isoform 3 precur...
PCDHGA12              0.152   protocadherin gamma subfamily A, 12 isoform 1 precurs...
PCDHGA12              0.152   protocadherin gamma subfamily A, 12 isoform 2 precur...
PCDHGA4               0.152   protocadherin gamma subfamily A, 4 isoform 2 precurs...
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
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