Search of human proteins with 4507635

Search of human proteins with 4507635

BLASTP 2.2.11 [Jun-05-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= gi|4507635 topoisomerase (DNA) III beta [Homo sapiens]
         (862 letters)

Database: hs.faa 
           37,866 sequences; 18,247,518 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|4507635 topoisomerase (DNA) III beta [Homo sapiens]               1792   0.0  
gi|10835218 topoisomerase (DNA) III alpha [Homo sapiens]              397   e-110
gi|110681708 zinc finger protein 579 [Homo sapiens]                    34   0.51 
gi|91208423 thyroid receptor-interacting protein 6 [Homo sapiens]      33   1.1  
gi|56243590 WD repeat domain 33 isoform 1 [Homo sapiens]               32   2.5  
gi|169204930 PREDICTED: hypothetical protein [Homo sapiens]            32   3.3  
gi|239750393 PREDICTED: hypothetical protein [Homo sapiens]            32   3.3  
gi|239744694 PREDICTED: hypothetical protein [Homo sapiens]            32   3.3  
gi|115298682 HBxAg transactivated protein 2 [Homo sapiens]             32   3.3  
gi|212549738 anaphase-promoting complex subunit 7 isoform b [Hom...    31   4.3  
gi|212549736 anaphase-promoting complex subunit 7 isoform a [Hom...    31   4.3  
gi|158854042 hypothetical protein LOC222183 [Homo sapiens]             31   4.3  
gi|38570075 collagen, type XXV, alpha 1 isoform 1 [Homo sapiens]       31   4.3  
gi|38570073 collagen, type XXV, alpha 1 isoform 2 [Homo sapiens]       31   4.3  
gi|56606142 complement component 1, q subcomponent-like 4 [Homo ...    31   5.6  
gi|148762969 myeloid/lymphoid or mixed-lineage leukemia 2 [Homo ...    31   5.6  
gi|115527070 alpha 2 type VI collagen isoform 2C2a' precursor [H...    31   5.6  
gi|115527066 alpha 2 type VI collagen isoform 2C2a precursor [Ho...    31   5.6  
gi|115527062 alpha 2 type VI collagen isoform 2C2 precursor [Hom...    31   5.6  
gi|119220552 sidekick 1 [Homo sapiens]                                 30   7.4  
gi|18641360 collectin sub-family member 12 [Homo sapiens]              30   7.4  
gi|111118972 collagen, type XI, alpha 2 isoform 2 preproprotein ...    30   7.4  
gi|111118968 collagen, type XI, alpha 2 isoform 3 preproprotein ...    30   7.4  
gi|111118970 collagen, type XI, alpha 2 isoform 1 preproprotein ...    30   7.4  
gi|149158690 HLA-B associated transcript-2 [Homo sapiens]              30   7.4  
gi|24308382 leukocyte receptor cluster member 8 [Homo sapiens]         30   7.4  
gi|62912482 high mobility group AT-hook 2 isoform b [Homo sapiens]     30   9.6  
gi|4504431 high mobility group AT-hook 2 isoform a [Homo sapiens]      30   9.6  
gi|47778921 alpha 1 type XIX collagen precursor [Homo sapiens]         30   9.6  
gi|110735435 collagen, type V, alpha 3 preproprotein [Homo sapiens]    30   9.6  

>gi|4507635 topoisomerase (DNA) III beta [Homo sapiens]
          Length = 862

 Score = 1792 bits (4641), Expect = 0.0
 Identities = 862/862 (100%), Positives = 862/862 (100%)

Query: 1   MKTVLMVAEKPSLAQSIAKILSRGSLSSHKGLNGACSVHEYTGTFAGQPVRFKMTSVCGH 60
           MKTVLMVAEKPSLAQSIAKILSRGSLSSHKGLNGACSVHEYTGTFAGQPVRFKMTSVCGH
Sbjct: 1   MKTVLMVAEKPSLAQSIAKILSRGSLSSHKGLNGACSVHEYTGTFAGQPVRFKMTSVCGH 60

Query: 61  VMTLDFLGKYNKWDKVDPAELFSQAPTEKKEANPKLNMVKFLQVEGRGCDYIVLWLDCDK 120
           VMTLDFLGKYNKWDKVDPAELFSQAPTEKKEANPKLNMVKFLQVEGRGCDYIVLWLDCDK
Sbjct: 61  VMTLDFLGKYNKWDKVDPAELFSQAPTEKKEANPKLNMVKFLQVEGRGCDYIVLWLDCDK 120

Query: 121 EGENICFEVLDAVLPVMNKAHGGEKTVFRARFSSITDTDICNAMACLGEPDHNEALSVDA 180
           EGENICFEVLDAVLPVMNKAHGGEKTVFRARFSSITDTDICNAMACLGEPDHNEALSVDA
Sbjct: 121 EGENICFEVLDAVLPVMNKAHGGEKTVFRARFSSITDTDICNAMACLGEPDHNEALSVDA 180

Query: 181 RQELDLRIGCAFTRFQTKYFQGKYGDLDSSLISFGPCQTPTLGFCVERHDKIQSFKPETY 240
           RQELDLRIGCAFTRFQTKYFQGKYGDLDSSLISFGPCQTPTLGFCVERHDKIQSFKPETY
Sbjct: 181 RQELDLRIGCAFTRFQTKYFQGKYGDLDSSLISFGPCQTPTLGFCVERHDKIQSFKPETY 240

Query: 241 WVLQAKVNTDKDRSLLLDWDRVRVFDREIAQMFLNMTKLEKEAQVEATSRKEKAKQRPLA 300
           WVLQAKVNTDKDRSLLLDWDRVRVFDREIAQMFLNMTKLEKEAQVEATSRKEKAKQRPLA
Sbjct: 241 WVLQAKVNTDKDRSLLLDWDRVRVFDREIAQMFLNMTKLEKEAQVEATSRKEKAKQRPLA 300

Query: 301 LNTVEMLRVASSSLGMGPQHAMQTAERLYTQGYISYPRTETTHYPENFDLKGSLRQQANH 360
           LNTVEMLRVASSSLGMGPQHAMQTAERLYTQGYISYPRTETTHYPENFDLKGSLRQQANH
Sbjct: 301 LNTVEMLRVASSSLGMGPQHAMQTAERLYTQGYISYPRTETTHYPENFDLKGSLRQQANH 360

Query: 361 PYWADTVKRLLAEGINRPRKGHDAGDHPPITPMKSATEAELGGDAWRLYEYITRHFIATV 420
           PYWADTVKRLLAEGINRPRKGHDAGDHPPITPMKSATEAELGGDAWRLYEYITRHFIATV
Sbjct: 361 PYWADTVKRLLAEGINRPRKGHDAGDHPPITPMKSATEAELGGDAWRLYEYITRHFIATV 420

Query: 421 SHDCKYLQSTISFRIGPELFTCSGKTVLSPGFTEVMPWQSVPLEESLPTCQRGDAFPVGE 480
           SHDCKYLQSTISFRIGPELFTCSGKTVLSPGFTEVMPWQSVPLEESLPTCQRGDAFPVGE
Sbjct: 421 SHDCKYLQSTISFRIGPELFTCSGKTVLSPGFTEVMPWQSVPLEESLPTCQRGDAFPVGE 480

Query: 481 VKMLEKQTNPPDYLTEAELITLMEKHGIGTDASIPVHINNICQRNYVTVESGRRLKPTNL 540
           VKMLEKQTNPPDYLTEAELITLMEKHGIGTDASIPVHINNICQRNYVTVESGRRLKPTNL
Sbjct: 481 VKMLEKQTNPPDYLTEAELITLMEKHGIGTDASIPVHINNICQRNYVTVESGRRLKPTNL 540

Query: 541 GIVLVHGYYKIDAELVLPTIRSAVEKQLNLIAQGKADYRQVLGHTLDVFKRKFHYFVDSI 600
           GIVLVHGYYKIDAELVLPTIRSAVEKQLNLIAQGKADYRQVLGHTLDVFKRKFHYFVDSI
Sbjct: 541 GIVLVHGYYKIDAELVLPTIRSAVEKQLNLIAQGKADYRQVLGHTLDVFKRKFHYFVDSI 600

Query: 601 AGMDELMEVSFSPLAATGKPLSRCGKCHRFMKYIQAKPSRLHCSHCDETYTLPQNGTIKL 660
           AGMDELMEVSFSPLAATGKPLSRCGKCHRFMKYIQAKPSRLHCSHCDETYTLPQNGTIKL
Sbjct: 601 AGMDELMEVSFSPLAATGKPLSRCGKCHRFMKYIQAKPSRLHCSHCDETYTLPQNGTIKL 660

Query: 661 YKELRCPLDDFELVLWSSGSRGKSYPLCPYCYNHPPFRDMKKGMGCNECTHPSCQHSLSM 720
           YKELRCPLDDFELVLWSSGSRGKSYPLCPYCYNHPPFRDMKKGMGCNECTHPSCQHSLSM
Sbjct: 661 YKELRCPLDDFELVLWSSGSRGKSYPLCPYCYNHPPFRDMKKGMGCNECTHPSCQHSLSM 720

Query: 721 LGIGQCVECESGVLVLDPTSGPKWKVACNKCNVVAHCFENAHRVRVSADTCSVCEAALLD 780
           LGIGQCVECESGVLVLDPTSGPKWKVACNKCNVVAHCFENAHRVRVSADTCSVCEAALLD
Sbjct: 721 LGIGQCVECESGVLVLDPTSGPKWKVACNKCNVVAHCFENAHRVRVSADTCSVCEAALLD 780

Query: 781 VDFNKAKSPLPGDETQHMGCVFCDPVFQELVELKHAASCHPMHRGGPGRRQGRGRGRARR 840
           VDFNKAKSPLPGDETQHMGCVFCDPVFQELVELKHAASCHPMHRGGPGRRQGRGRGRARR
Sbjct: 781 VDFNKAKSPLPGDETQHMGCVFCDPVFQELVELKHAASCHPMHRGGPGRRQGRGRGRARR 840

Query: 841 PPGKPNPRRPKDKMSALAAYFV 862
           PPGKPNPRRPKDKMSALAAYFV
Sbjct: 841 PPGKPNPRRPKDKMSALAAYFV 862


>gi|10835218 topoisomerase (DNA) III alpha [Homo sapiens]
          Length = 1001

 Score =  397 bits (1020), Expect = e-110
 Identities = 264/716 (36%), Positives = 371/716 (51%), Gaps = 51/716 (7%)

Query: 1   MKTVLMVAEKPSLAQSIAKILSRGSLSSHKGLNGACSVHEYTGTFAGQPVRFKMTSVCGH 60
           ++ VL VAEK   A+ IA +LS G +   +GL+    ++E+     GQ V   MTSV GH
Sbjct: 33  VRKVLCVAEKNDAAKGIADLLSNGRMRRREGLSKFNKIYEFDYHLYGQNVTMVMTSVSGH 92

Query: 61  VMTLDFLGKYNKWDKVDPAELFSQAPTEKKEANPKLNMVKFLQVEGRGCDYIVLWLDCDK 120
           ++  DF  ++ KW   +P  LF +A  EK      +++ K L+ E R C  +V+W DCD+
Sbjct: 93  LLAHDFQMQFRKWQSCNPLVLF-EAEIEKYCPENFVDIKKTLERETRQCQALVIWTDCDR 151

Query: 121 EGENICFEVLDAVLPVMNKAHGGEKTVFRARFSSITDTDICNAMACLGEPDHNEALSVDA 180
           EGENI FE++        KA      V RARFS IT   +  A   L EPD   + +VD 
Sbjct: 152 EGENIGFEIIHVC-----KAVKPNLQVLRARFSEITPHAVRTACENLTEPDQRVSDAVDV 206

Query: 181 RQELDLRIGCAFTRFQTKYFQGKYGD-LDSSLISFGPCQTPTLGFCVERHDKIQSFKPET 239
           RQELDLRIG AFTRFQT   Q  + + L   LIS+G CQ PTLGF VER   IQ+F PE 
Sbjct: 207 RQELDLRIGAAFTRFQTLRLQRIFPEVLAEQLISYGSCQFPTLGFVVERFKAIQAFVPEI 266

Query: 240 YWVLQAKVNTD-KDRSLLLDWDRVRVFDREIAQMFLNMTKLEKEAQVEATSRKEKAKQRP 298
           +   + KV  D KD  +  +W R R+F+     +   +   +  A V     K K+K RP
Sbjct: 267 FH--RIKVTHDHKDGIVEFNWKRHRLFNHTACLVLYQLCVEDPMATVVEVRSKPKSKWRP 324

Query: 299 LALNTVEMLRVASSSLGMGPQHAMQTAERLYTQGYISYPRTETTHYPENFDLKGSLRQQA 358
            AL+TVE+ ++AS  L +  +  M+ AE+LYTQGYISYPRTET  +P + +L   + QQ 
Sbjct: 325 QALDTVELEKLASRKLRINAKETMRIAEKLYTQGYISYPRTETNIFPRDLNLTVLVEQQT 384

Query: 359 NHPYWADTVKRLLAEGINRPRKGHDAGD-HPPITPMKSATEAELGGDAWRLYEYITRHFI 417
             P W    + +L  G   PR G+ +   HPPI P K      L GD  RLYE+I RHF+
Sbjct: 385 PDPRWGAFAQSILERGGPTPRNGNKSDQAHPPIHPTKYTNN--LQGDEQRLYEFIVRHFL 442

Query: 418 ATVSHDCKYLQSTISFRIGPELFTCSGKTVLSPGFTEVMPWQSVPLEESLPTCQRGDAFP 477
           A  S D +  ++T+   I  E F   G  +L+  + +V P+     ++ LP  ++G  F 
Sbjct: 443 ACCSQDAQGQETTVEIDIAQERFVAHGLMILARNYLDVYPYDHWS-DKILPVYEQGSHFQ 501

Query: 478 VGEVKMLEKQTNPPDYLTEAELITLMEKHGIGTDASIPVHINNICQRNYVTVESGRRLKP 537
              V+M++ +T+PP  LTEA+LI LMEKHGIGTDA+   HI  I  R YV +   +R  P
Sbjct: 502 PSTVEMVDGETSPPKLLTEADLIALMEKHGIGTDATHAEHIETIKARMYVGLTPDKRFLP 561

Query: 538 TNLGIVLVHGYYKIDAELVLPTIRSAVEKQLNLIAQGKADYRQVLGHTLDVFKRKFHYFV 597
            +LG+ LV GY  +  E+  P +R+ +E  L LI  GK D   VL   +  +K+ F   V
Sbjct: 562 GHLGMGLVEGYDSMGYEMSKPDLRAELEADLKLICDGKKDKFVVLRQQVQKYKQVFIEAV 621

Query: 598 DSIAGMDELMEVSF---SPLA-------ATGKPLSRCGKCHRFMKYIQAKPSRLHCS--- 644
                +DE +   F   + LA       A  +P+ +C +C++ M     K    + S   
Sbjct: 622 AKAKKLDEALAQYFGNGTELAQQEDIYPAMPEPIRKCPQCNKDMVLKTKKNGGFYLSCMG 681

Query: 645 --HCDETYTLPQNGTIKLYKELRCPLDDFELVLWSSGSRGKSYPLCPYCYNHPPFR 698
              C     LP +                  VL +S    +   +CP C  HP +R
Sbjct: 682 FPECRSAVWLPDS------------------VLEAS----RDSSVCPVCQPHPVYR 715


>gi|110681708 zinc finger protein 579 [Homo sapiens]
          Length = 562

 Score = 34.3 bits (77), Expect = 0.51
 Identities = 18/31 (58%), Positives = 19/31 (61%), Gaps = 1/31 (3%)

Query: 821 PMHRG-GPGRRQGRGRGRARRPPGKPNPRRP 850
           P HRG G GR +GRGRGR R   G   PR P
Sbjct: 13  PPHRGRGRGRGRGRGRGRGRGRGGAGAPRAP 43


>gi|91208423 thyroid receptor-interacting protein 6 [Homo sapiens]
          Length = 476

 Score = 33.1 bits (74), Expect = 1.1
 Identities = 31/128 (24%), Positives = 45/128 (35%), Gaps = 26/128 (20%)

Query: 706 CNECTHPSCQHSLSMLGIGQ------CVECESGV----LVLDPTSGPKWKVACNKCNVVA 755
           C  C+ P     L  +G         CV C  G+      +D TS               
Sbjct: 339 CATCSQPILDRILRAMGKAYHPGCFTCVVCHRGLDGIPFTVDATSQ-------------I 385

Query: 756 HCFENAHRVRVSADTCSVCEAALLDVDFNKAKSPLPG-DETQHMGCVFCDPVFQELVELK 814
           HC E+ HR    A  CSVC  A++     +    +   D + H+GC  C+     L    
Sbjct: 386 HCIEDFHRK--FAPRCSVCGGAIMPEPGQEETVRIVALDRSFHIGCYKCEECGLLLSSEG 443

Query: 815 HAASCHPM 822
               C+P+
Sbjct: 444 ECQGCYPL 451


>gi|56243590 WD repeat domain 33 isoform 1 [Homo sapiens]
          Length = 1336

 Score = 32.0 bits (71), Expect = 2.5
 Identities = 18/39 (46%), Positives = 20/39 (51%), Gaps = 9/39 (23%)

Query: 824  RGGPGR---------RQGRGRGRARRPPGKPNPRRPKDK 853
            RGGPG           +G GRG AR PPG    RRP D+
Sbjct: 1047 RGGPGPPFPPDHREFSEGDGRGAARGPPGAWEGRRPGDE 1085


>gi|169204930 PREDICTED: hypothetical protein [Homo sapiens]
          Length = 373

 Score = 31.6 bits (70), Expect = 3.3
 Identities = 18/39 (46%), Positives = 22/39 (56%), Gaps = 7/39 (17%)

Query: 820 HPMHRGGPGRRQGRGRG------RARRPP-GKPNPRRPK 851
           H   RGG G  +G G G      RAR+PP G+P PRR +
Sbjct: 195 HAALRGGGGGSEGGGGGARPSPPRARQPPSGRPRPRRTR 233


>gi|239750393 PREDICTED: hypothetical protein [Homo sapiens]
          Length = 373

 Score = 31.6 bits (70), Expect = 3.3
 Identities = 18/39 (46%), Positives = 22/39 (56%), Gaps = 7/39 (17%)

Query: 820 HPMHRGGPGRRQGRGRG------RARRPP-GKPNPRRPK 851
           H   RGG G  +G G G      RAR+PP G+P PRR +
Sbjct: 195 HAALRGGGGGSEGGGGGARPSPPRARQPPSGRPRPRRTR 233


>gi|239744694 PREDICTED: hypothetical protein [Homo sapiens]
          Length = 373

 Score = 31.6 bits (70), Expect = 3.3
 Identities = 18/39 (46%), Positives = 22/39 (56%), Gaps = 7/39 (17%)

Query: 820 HPMHRGGPGRRQGRGRG------RARRPP-GKPNPRRPK 851
           H   RGG G  +G G G      RAR+PP G+P PRR +
Sbjct: 195 HAALRGGGGGSEGGGGGARPSPPRARQPPSGRPRPRRTR 233


>gi|115298682 HBxAg transactivated protein 2 [Homo sapiens]
          Length = 2817

 Score = 31.6 bits (70), Expect = 3.3
 Identities = 15/52 (28%), Positives = 28/52 (53%), Gaps = 2/52 (3%)

Query: 811  VELKHAASCHPMHR--GGPGRRQGRGRGRARRPPGKPNPRRPKDKMSALAAY 860
            V+L + +S H       G G++  +     +R   KP P++PK+K+ AL+ +
Sbjct: 1598 VDLINGSSAHHQEGVPNGTGQKNSKDSTGKKREDPKPGPKKPKEKVDALSQF 1649


>gi|212549738 anaphase-promoting complex subunit 7 isoform b [Homo
           sapiens]
          Length = 537

 Score = 31.2 bits (69), Expect = 4.3
 Identities = 23/80 (28%), Positives = 37/80 (46%), Gaps = 4/80 (5%)

Query: 225 CVERHDKIQSFKPETYWVLQAKVNTDKDRSLLLDWDRVRVFDREIAQMFLNMTKLEKEAQ 284
           C+    +++    E Y +L+     DKD   +LD    R    +I  M  N+ K   + +
Sbjct: 131 CLPSEIEVKYKMAECYTMLKQ----DKDAIAILDGIPSRQRTPKINMMLANLYKKAGQER 186

Query: 285 VEATSRKEKAKQRPLALNTV 304
              TS KE  +Q PLAL+ +
Sbjct: 187 PSVTSYKEVLRQCPLALDAI 206


>gi|212549736 anaphase-promoting complex subunit 7 isoform a [Homo
           sapiens]
          Length = 599

 Score = 31.2 bits (69), Expect = 4.3
 Identities = 23/80 (28%), Positives = 37/80 (46%), Gaps = 4/80 (5%)

Query: 225 CVERHDKIQSFKPETYWVLQAKVNTDKDRSLLLDWDRVRVFDREIAQMFLNMTKLEKEAQ 284
           C+    +++    E Y +L+     DKD   +LD    R    +I  M  N+ K   + +
Sbjct: 131 CLPSEIEVKYKMAECYTMLKQ----DKDAIAILDGIPSRQRTPKINMMLANLYKKAGQER 186

Query: 285 VEATSRKEKAKQRPLALNTV 304
              TS KE  +Q PLAL+ +
Sbjct: 187 PSVTSYKEVLRQCPLALDAI 206


>gi|158854042 hypothetical protein LOC222183 [Homo sapiens]
          Length = 653

 Score = 31.2 bits (69), Expect = 4.3
 Identities = 17/42 (40%), Positives = 21/42 (50%), Gaps = 3/42 (7%)

Query: 821 PMHRGGPGRRQGRGRGR---ARRPPGKPNPRRPKDKMSALAA 859
           P   GG G+R G   GR   A  PP KP+   P+ +  A AA
Sbjct: 311 PQRNGGSGQRSGAHGGRPGSAHSPPDKPSSPSPRVRDKAAAA 352


>gi|38570075 collagen, type XXV, alpha 1 isoform 1 [Homo sapiens]
          Length = 654

 Score = 31.2 bits (69), Expect = 4.3
 Identities = 13/26 (50%), Positives = 16/26 (61%)

Query: 825 GGPGRRQGRGRGRARRPPGKPNPRRP 850
           G PG+R  RGR     PPG+P P+ P
Sbjct: 123 GPPGKRGKRGRRGESGPPGQPGPQGP 148


>gi|38570073 collagen, type XXV, alpha 1 isoform 2 [Homo sapiens]
          Length = 642

 Score = 31.2 bits (69), Expect = 4.3
 Identities = 13/26 (50%), Positives = 16/26 (61%)

Query: 825 GGPGRRQGRGRGRARRPPGKPNPRRP 850
           G PG+R  RGR     PPG+P P+ P
Sbjct: 123 GPPGKRGKRGRRGESGPPGQPGPQGP 148


>gi|56606142 complement component 1, q subcomponent-like 4 [Homo
           sapiens]
          Length = 238

 Score = 30.8 bits (68), Expect = 5.6
 Identities = 15/34 (44%), Positives = 16/34 (47%)

Query: 817 ASCHPMHRGGPGRRQGRGRGRARRPPGKPNPRRP 850
           AS  P   G  G    RG+   R PPG P PR P
Sbjct: 47  ASVPPFPPGAKGEVGRRGKAGLRGPPGPPGPRGP 80


>gi|148762969 myeloid/lymphoid or mixed-lineage leukemia 2 [Homo
            sapiens]
          Length = 5537

 Score = 30.8 bits (68), Expect = 5.6
 Identities = 17/57 (29%), Positives = 28/57 (49%), Gaps = 5/57 (8%)

Query: 706  CNECTHPSCQHS----LSMLGIGQCVECESGVLVLDPTSGPKWKVACNKCNVVAHCF 758
            C++C HP C +S    + +L   +CVEC     V    S P   + C+ C++  H +
Sbjct: 1400 CSQCYHPYCVNSKITKVMLLKGWRCVEC-IVCEVCGQASDPSRLLLCDDCDISYHTY 1455


>gi|115527070 alpha 2 type VI collagen isoform 2C2a' precursor [Homo
           sapiens]
          Length = 828

 Score = 30.8 bits (68), Expect = 5.6
 Identities = 12/28 (42%), Positives = 17/28 (60%)

Query: 824 RGGPGRRQGRGRGRARRPPGKPNPRRPK 851
           +G PGR+  +G      PPG+P PR P+
Sbjct: 545 KGEPGRKGEKGEPADPGPPGEPGPRGPR 572


>gi|115527066 alpha 2 type VI collagen isoform 2C2a precursor [Homo
           sapiens]
          Length = 918

 Score = 30.8 bits (68), Expect = 5.6
 Identities = 12/28 (42%), Positives = 17/28 (60%)

Query: 824 RGGPGRRQGRGRGRARRPPGKPNPRRPK 851
           +G PGR+  +G      PPG+P PR P+
Sbjct: 545 KGEPGRKGEKGEPADPGPPGEPGPRGPR 572


>gi|115527062 alpha 2 type VI collagen isoform 2C2 precursor [Homo
           sapiens]
          Length = 1019

 Score = 30.8 bits (68), Expect = 5.6
 Identities = 12/28 (42%), Positives = 17/28 (60%)

Query: 824 RGGPGRRQGRGRGRARRPPGKPNPRRPK 851
           +G PGR+  +G      PPG+P PR P+
Sbjct: 545 KGEPGRKGEKGEPADPGPPGEPGPRGPR 572


>gi|119220552 sidekick 1 [Homo sapiens]
          Length = 2213

 Score = 30.4 bits (67), Expect = 7.4
 Identities = 16/34 (47%), Positives = 18/34 (52%), Gaps = 3/34 (8%)

Query: 821 PMHRGGPGRRQGRGRGRAR---RPPGKPNPRRPK 851
           P  R GPGR +G   GRAR    P   P P RP+
Sbjct: 19  PPERAGPGRPRGSPPGRARPSLAPRPGPEPSRPR 52


>gi|18641360 collectin sub-family member 12 [Homo sapiens]
          Length = 742

 Score = 30.4 bits (67), Expect = 7.4
 Identities = 13/30 (43%), Positives = 17/30 (56%)

Query: 821 PMHRGGPGRRQGRGRGRARRPPGKPNPRRP 850
           P  RGG G +  +G   +R  PGKP P+ P
Sbjct: 493 PGERGGKGSKGSQGPKGSRGSPGKPGPQGP 522


>gi|111118972 collagen, type XI, alpha 2 isoform 2 preproprotein
           [Homo sapiens]
          Length = 1650

 Score = 30.4 bits (67), Expect = 7.4
 Identities = 13/30 (43%), Positives = 15/30 (50%)

Query: 821 PMHRGGPGRRQGRGRGRARRPPGKPNPRRP 850
           P   G PG R   G G    PPG+P P+ P
Sbjct: 925 PGPAGSPGERGAAGSGGPIGPPGRPGPQGP 954


>gi|111118968 collagen, type XI, alpha 2 isoform 3 preproprotein
           [Homo sapiens]
          Length = 1629

 Score = 30.4 bits (67), Expect = 7.4
 Identities = 13/30 (43%), Positives = 15/30 (50%)

Query: 821 PMHRGGPGRRQGRGRGRARRPPGKPNPRRP 850
           P   G PG R   G G    PPG+P P+ P
Sbjct: 904 PGPAGSPGERGAAGSGGPIGPPGRPGPQGP 933


>gi|111118970 collagen, type XI, alpha 2 isoform 1 preproprotein [Homo
            sapiens]
          Length = 1736

 Score = 30.4 bits (67), Expect = 7.4
 Identities = 13/30 (43%), Positives = 15/30 (50%)

Query: 821  PMHRGGPGRRQGRGRGRARRPPGKPNPRRP 850
            P   G PG R   G G    PPG+P P+ P
Sbjct: 1011 PGPAGSPGERGAAGSGGPIGPPGRPGPQGP 1040


>gi|149158690 HLA-B associated transcript-2 [Homo sapiens]
          Length = 2157

 Score = 30.4 bits (67), Expect = 7.4
 Identities = 14/29 (48%), Positives = 16/29 (55%)

Query: 825  GGPGRRQGRGRGRARRPPGKPNPRRPKDK 853
            GGPG R G GRG  R  P   N  RP ++
Sbjct: 1417 GGPGGRTGPGRGDKRSWPSPKNRSRPPEE 1445


>gi|24308382 leukocyte receptor cluster member 8 [Homo sapiens]
          Length = 800

 Score = 30.4 bits (67), Expect = 7.4
 Identities = 21/51 (41%), Positives = 27/51 (52%), Gaps = 14/51 (27%)

Query: 819 CHPMHR--------GGPGRRQGRGRGRARRPPGKPN----PRRPKDKMSAL 857
           CHP+ R        GG G    RGRGRA+R  GK +     +R + KM+AL
Sbjct: 450 CHPVGRRNPPPKGRGGRGAHMDRGRGRAQR--GKRHDLAPTKRSRKKMAAL 498


>gi|62912482 high mobility group AT-hook 2 isoform b [Homo sapiens]
          Length = 106

 Score = 30.0 bits (66), Expect = 9.6
 Identities = 13/27 (48%), Positives = 19/27 (70%), Gaps = 4/27 (14%)

Query: 831 QGRGRGRARR----PPGKPNPRRPKDK 853
           Q RGRGR R+    P G+P+P+RP+ +
Sbjct: 25  QKRGRGRPRKQQQEPTGEPSPKRPRGR 51


>gi|4504431 high mobility group AT-hook 2 isoform a [Homo sapiens]
          Length = 109

 Score = 30.0 bits (66), Expect = 9.6
 Identities = 13/27 (48%), Positives = 19/27 (70%), Gaps = 4/27 (14%)

Query: 831 QGRGRGRARR----PPGKPNPRRPKDK 853
           Q RGRGR R+    P G+P+P+RP+ +
Sbjct: 25  QKRGRGRPRKQQQEPTGEPSPKRPRGR 51


>gi|47778921 alpha 1 type XIX collagen precursor [Homo sapiens]
          Length = 1142

 Score = 30.0 bits (66), Expect = 9.6
 Identities = 13/27 (48%), Positives = 15/27 (55%)

Query: 824 RGGPGRRQGRGRGRARRPPGKPNPRRP 850
           +G PG+   RGR     PPGKP P  P
Sbjct: 399 QGPPGKEGQRGRRGKTGPPGKPGPPGP 425


>gi|110735435 collagen, type V, alpha 3 preproprotein [Homo sapiens]
          Length = 1745

 Score = 30.0 bits (66), Expect = 9.6
 Identities = 13/32 (40%), Positives = 16/32 (50%)

Query: 820 HPMHRGGPGRRQGRGRGRARRPPGKPNPRRPK 851
           HP H G  G +  +G   +  PPG P PR  K
Sbjct: 684 HPGHEGPTGEKGAQGPPGSAGPPGYPGPRGVK 715


  Database: hs.faa
    Posted date:  Aug 4, 2009  4:42 PM
  Number of letters in database: 18,247,518
  Number of sequences in database:  37,866
  
Lambda     K      H
   0.320    0.136    0.424 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 35,769,139
Number of Sequences: 37866
Number of extensions: 1713197
Number of successful extensions: 5679
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 19
Number of HSP's successfully gapped in prelim test: 18
Number of HSP's that attempted gapping in prelim test: 5522
Number of HSP's gapped (non-prelim): 157
length of query: 862
length of database: 18,247,518
effective HSP length: 111
effective length of query: 751
effective length of database: 14,044,392
effective search space: 10547338392
effective search space used: 10547338392
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 66 (30.0 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.