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Search of human proteins with 4506753
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|4506753 RuvB-like 1 [Homo sapiens]
(456 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|4506753 RuvB-like 1 [Homo sapiens] 890 0.0
gi|5730023 RuvB-like 2 [Homo sapiens] 375 e-104
gi|21327685 YME1-like 1 isoform 1 [Homo sapiens] 46 8e-05
gi|7657689 YME1-like 1 isoform 3 [Homo sapiens] 46 8e-05
gi|17865802 vacuolar protein sorting factor 4B [Homo sapiens] 45 1e-04
gi|229577436 spermatogenesis associated 5-like 1 [Homo sapiens] 44 2e-04
gi|157671927 spermatogenesis associated 5 [Homo sapiens] 44 2e-04
gi|7019569 vacuolar protein sorting factor 4A [Homo sapiens] 44 4e-04
gi|45643125 nuclear VCP-like isoform 2 [Homo sapiens] 42 0.001
gi|45643123 nuclear VCP-like isoform 1 [Homo sapiens] 42 0.001
gi|40806170 spastin isoform 2 [Homo sapiens] 39 0.010
gi|4505725 peroxin1 [Homo sapiens] 39 0.010
gi|11875211 spastin isoform 1 [Homo sapiens] 39 0.010
gi|40806173 spastic paraplegia 7 isoform 2 [Homo sapiens] 39 0.010
gi|4507173 spastic paraplegia 7 isoform 1 [Homo sapiens] 39 0.010
gi|6005942 valosin-containing protein [Homo sapiens] 39 0.013
gi|5802970 AFG3 ATPase family gene 3-like 2 [Homo sapiens] 38 0.017
gi|62177112 katanin p60 subunit A-like 1 [Homo sapiens] 38 0.017
gi|14149767 katanin p60 subunit A-like 1 [Homo sapiens] 38 0.017
gi|24430151 proteasome 26S ATPase subunit 1 [Homo sapiens] 38 0.022
gi|11321607 thyroid hormone receptor interactor 13 [Homo sapiens] 37 0.028
gi|5901990 katanin p60 subunit A 1 [Homo sapiens] 37 0.037
gi|89064750 PREDICTED: similar to proteasome 26S ATPase subunit ... 36 0.083
gi|194018488 peroxisomal biogenesis factor 6 [Homo sapiens] 36 0.083
gi|24497435 proteasome 26S ATPase subunit 5 [Homo sapiens] 36 0.083
gi|24430155 proteasome 26S ATPase subunit 4 isoform 2 [Homo sapi... 36 0.083
gi|5729991 proteasome 26S ATPase subunit 4 isoform 1 [Homo sapiens] 36 0.083
gi|4506209 proteasome 26S ATPase subunit 2 [Homo sapiens] 36 0.083
gi|32528306 replication factor C large subunit [Homo sapiens] 35 0.11
gi|21361144 proteasome 26S ATPase subunit 3 [Homo sapiens] 35 0.11
>gi|4506753 RuvB-like 1 [Homo sapiens]
Length = 456
Score = 890 bits (2300), Expect = 0.0
Identities = 456/456 (100%), Positives = 456/456 (100%)
Query: 1 MKIEEVKSTTKTQRIASHSHVKGLGLDESGLAKQAASGLVGQENAREACGVIVELIKSKK 60
MKIEEVKSTTKTQRIASHSHVKGLGLDESGLAKQAASGLVGQENAREACGVIVELIKSKK
Sbjct: 1 MKIEEVKSTTKTQRIASHSHVKGLGLDESGLAKQAASGLVGQENAREACGVIVELIKSKK 60
Query: 61 MAGRAVLLAGPPGTGKTALALAIAQELGSKVPFCPMVGSEVYSTEIKKTEVLMENFRRAI 120
MAGRAVLLAGPPGTGKTALALAIAQELGSKVPFCPMVGSEVYSTEIKKTEVLMENFRRAI
Sbjct: 61 MAGRAVLLAGPPGTGKTALALAIAQELGSKVPFCPMVGSEVYSTEIKKTEVLMENFRRAI 120
Query: 121 GLRIKETKEVYEGEVTELTPCETENPMGGYGKTISHVIIGLKTAKGTKQLKLDPSIFESL 180
GLRIKETKEVYEGEVTELTPCETENPMGGYGKTISHVIIGLKTAKGTKQLKLDPSIFESL
Sbjct: 121 GLRIKETKEVYEGEVTELTPCETENPMGGYGKTISHVIIGLKTAKGTKQLKLDPSIFESL 180
Query: 181 QKERVEAGDVIYIEANSGAVKRQGRCDTYATEFDLEAEEYVPLPKGDVHKKKEIIQDVTL 240
QKERVEAGDVIYIEANSGAVKRQGRCDTYATEFDLEAEEYVPLPKGDVHKKKEIIQDVTL
Sbjct: 181 QKERVEAGDVIYIEANSGAVKRQGRCDTYATEFDLEAEEYVPLPKGDVHKKKEIIQDVTL 240
Query: 241 HDLDVANARPQGGQDILSMMGQLMKPKKTEITDKLRGEINKVVNKYIDQGIAELVPGVLF 300
HDLDVANARPQGGQDILSMMGQLMKPKKTEITDKLRGEINKVVNKYIDQGIAELVPGVLF
Sbjct: 241 HDLDVANARPQGGQDILSMMGQLMKPKKTEITDKLRGEINKVVNKYIDQGIAELVPGVLF 300
Query: 301 VDEVHMLDIECFTYLHRALESSIAPIVIFASNRGNCVIRGTEDITSPHGIPLDLLDRVMI 360
VDEVHMLDIECFTYLHRALESSIAPIVIFASNRGNCVIRGTEDITSPHGIPLDLLDRVMI
Sbjct: 301 VDEVHMLDIECFTYLHRALESSIAPIVIFASNRGNCVIRGTEDITSPHGIPLDLLDRVMI 360
Query: 361 IRTMLYTPQEMKQIIKIRAQTEGINISEEALNHLGEIGTKTTLRYSVQLLTPANLLAKIN 420
IRTMLYTPQEMKQIIKIRAQTEGINISEEALNHLGEIGTKTTLRYSVQLLTPANLLAKIN
Sbjct: 361 IRTMLYTPQEMKQIIKIRAQTEGINISEEALNHLGEIGTKTTLRYSVQLLTPANLLAKIN 420
Query: 421 GKDSIEKEHVEEISELFYDAKSSAKILADQQDKYMK 456
GKDSIEKEHVEEISELFYDAKSSAKILADQQDKYMK
Sbjct: 421 GKDSIEKEHVEEISELFYDAKSSAKILADQQDKYMK 456
>gi|5730023 RuvB-like 2 [Homo sapiens]
Length = 463
Score = 375 bits (962), Expect = e-104
Identities = 195/456 (42%), Positives = 301/456 (66%), Gaps = 15/456 (3%)
Query: 2 KIEEVKSTTKTQRIASHSHVKGLGLDESGLAKQAASGLVGQENAREACGVIVELIKSKKM 61
K+ E++ T+ +RI +HSH++GLGLD++ +QA+ G+VGQ AR A GV++E+I+ K+
Sbjct: 9 KVPEIRDVTRIERIGAHSHIRGLGLDDALEPRQASQGMVGQLAARRAAGVVLEMIREGKI 68
Query: 62 AGRAVLLAGPPGTGKTALALAIAQELGSKVPFCPMVGSEVYSTEIKKTEVLMENFRRAIG 121
AGRAVL+AG PGTGKTA+A+ +AQ LG PF + GSE++S E+ KTE L + FRR+IG
Sbjct: 69 AGRAVLIAGQPGTGKTAIAMGMAQALGPDTPFTAIAGSEIFSLEMSKTEALTQAFRRSIG 128
Query: 122 LRIKETKEVYEGEVTELTPCETENPMGGYGKTISHVIIGLKTAKGTKQLKLDPSIFESLQ 181
+RIKE E+ EGEV E+ + + P G G + + LKT + L + ESL
Sbjct: 129 VRIKEETEIIEGEVVEI---QIDRPATGTGSKVGK--LTLKTTEMETIYDLGTKMIESLT 183
Query: 182 KERVEAGDVIYIEANSGAVKRQGRCDTYATEFDLEAEE--YVPLPKGDVHKKKEIIQDVT 239
K++V+AGDVI I+ +G + + GR T A ++D + +V P G++ K+KE++ V+
Sbjct: 184 KDKVQAGDVITIDKATGKISKLGRSFTRARDYDAMGSQTKFVQCPDGELQKRKEVVHTVS 243
Query: 240 LHDLDVANARPQGGQDILSMMGQLMKPKKTEITDKLRGEINKVVNKYIDQGIAELVPGVL 299
LH++DV N+R QG L EI ++R +IN V ++ ++G AE++PGVL
Sbjct: 244 LHEIDVINSRTQG-------FLALFSGDTGEIKSEVREQINAKVAEWREEGKAEIIPGVL 296
Query: 300 FVDEVHMLDIECFTYLHRALESSIAPIVIFASNRGNCVIRGTEDITSPHGIPLDLLDRVM 359
F+DEVHMLDIE F++L+RALES +AP++I A+NRG IRGT SPHGIP+DLLDR++
Sbjct: 297 FIDEVHMLDIESFSFLNRALESDMAPVLIMATNRGITRIRGT-SYQSPHGIPIDLLDRLL 355
Query: 360 IIRTMLYTPQEMKQIIKIRAQTEGINISEEALNHLGEIGTKTTLRYSVQLLTPANLLAKI 419
I+ T Y+ ++ KQI++IR + E + +SE+A L IG +T+LRY++QL+T A+L+ +
Sbjct: 356 IVSTTPYSEKDTKQILRIRCEEEDVEMSEDAYTVLTRIGLETSLRYAIQLITAASLVCRK 415
Query: 420 NGKDSIEKEHVEEISELFYDAKSSAKILADQQDKYM 455
++ + ++ + LF D S + + + QD ++
Sbjct: 416 RKGTEVQVDDIKRVYSLFLDESRSTQYMKEYQDAFL 451
>gi|21327685 YME1-like 1 isoform 1 [Homo sapiens]
Length = 773
Score = 45.8 bits (107), Expect = 8e-05
Identities = 57/208 (27%), Positives = 91/208 (43%), Gaps = 45/208 (21%)
Query: 41 GQENAREACGVIVELIKSKK----MAGR---AVLLAGPPGTGKTALALAIAQELGSKVPF 93
G E A++ +VE +K+ + + G+ +LL GPPGTGKT LA A+A E + VPF
Sbjct: 343 GVEEAKQELQEVVEFLKNPQKFTILGGKLPKGILLVGPPGTGKTLLARAVAGE--ADVPF 400
Query: 94 CPMVGSEVYSTEIKKTEVLMEN-FRRAIGLRIKETKEVYEGEVTELTPCETENPMGGYGK 152
GSE + + N FR A + ++ E+ + E+PM Y +
Sbjct: 401 YYASGSEFDEMFVGVGASRIRNLFREA---KANAPCVIFIDELDSVGGKRIESPMHPYSR 457
Query: 153 -TISHVII---GLKTAKGTKQLKLDPSIFESLQKERVEAGDVIYIEANSGAVKRQGRCDT 208
TI+ ++ G K +G + G + EA A+ R GR
Sbjct: 458 QTINQLLAEMDGFKPNEGV-----------------IIIGATNFPEALDNALIRPGR--- 497
Query: 209 YATEFDLEAEEYVPLPKGDVHKKKEIIQ 236
FD++ V +P+ DV + EI++
Sbjct: 498 ----FDMQ----VTVPRPDVKGRTEILK 517
>gi|7657689 YME1-like 1 isoform 3 [Homo sapiens]
Length = 716
Score = 45.8 bits (107), Expect = 8e-05
Identities = 57/208 (27%), Positives = 91/208 (43%), Gaps = 45/208 (21%)
Query: 41 GQENAREACGVIVELIKSKK----MAGR---AVLLAGPPGTGKTALALAIAQELGSKVPF 93
G E A++ +VE +K+ + + G+ +LL GPPGTGKT LA A+A E + VPF
Sbjct: 286 GVEEAKQELQEVVEFLKNPQKFTILGGKLPKGILLVGPPGTGKTLLARAVAGE--ADVPF 343
Query: 94 CPMVGSEVYSTEIKKTEVLMEN-FRRAIGLRIKETKEVYEGEVTELTPCETENPMGGYGK 152
GSE + + N FR A + ++ E+ + E+PM Y +
Sbjct: 344 YYASGSEFDEMFVGVGASRIRNLFREA---KANAPCVIFIDELDSVGGKRIESPMHPYSR 400
Query: 153 -TISHVII---GLKTAKGTKQLKLDPSIFESLQKERVEAGDVIYIEANSGAVKRQGRCDT 208
TI+ ++ G K +G + G + EA A+ R GR
Sbjct: 401 QTINQLLAEMDGFKPNEGV-----------------IIIGATNFPEALDNALIRPGR--- 440
Query: 209 YATEFDLEAEEYVPLPKGDVHKKKEIIQ 236
FD++ V +P+ DV + EI++
Sbjct: 441 ----FDMQ----VTVPRPDVKGRTEILK 460
>gi|17865802 vacuolar protein sorting factor 4B [Homo sapiens]
Length = 444
Score = 45.4 bits (106), Expect = 1e-04
Identities = 35/116 (30%), Positives = 56/116 (48%), Gaps = 10/116 (8%)
Query: 37 SGLVGQENAREACGVIV-------ELIKSKKMAGRAVLLAGPPGTGKTALALAIAQELGS 89
S + G E A+EA V L K+ R +LL GPPGTGK+ LA A+A E +
Sbjct: 134 SDVAGLEGAKEALKEAVILPIKFPHLFTGKRTPWRGILLFGPPGTGKSYLAKAVATEANN 193
Query: 90 KVPFCPMVGSEVYSTEIKKTEVLMENFRRAIGLRIKETKEVYEGEVTELTPCETEN 145
F + S++ S + ++E L++N + R + ++ E+ L +EN
Sbjct: 194 ST-FFSISSSDLVSKWLGESEKLVKNLFQL--ARENKPSIIFIDEIDSLCGSRSEN 246
>gi|229577436 spermatogenesis associated 5-like 1 [Homo sapiens]
Length = 753
Score = 44.3 bits (103), Expect = 2e-04
Identities = 52/179 (29%), Positives = 75/179 (41%), Gaps = 34/179 (18%)
Query: 64 RAVLLAGPPGTGKTALALAIAQELGSK---VPFCPMVGSEVYSTEIKKTEVLMENFRRAI 120
R VLLAGPPG GKT L A+A+E G++ V + GS TE E + F+RA
Sbjct: 235 RGVLLAGPPGVGKTQLVRAVAREAGAELLAVSAPALQGSRPGETE----ENVRRVFQRAR 290
Query: 121 GLRIKETKEVYEGEVTELTPCETENPMGGYGKTISHVIIGLKTAKGTKQLKLDPSIFESL 180
L + ++ E+ L C + ++ V+ L A G
Sbjct: 291 ELASRGPSLLFLDEMDAL--CPQRGSRAPESRVVAQVLTLLDGASG-------------- 334
Query: 181 QKERVEAGDVIYIEANSGAVKRQGRCDTYATEFDLEAEEYVPLPKGDVHKKKEIIQDVT 239
+E V G +A A++R GR FD E P K ++KEI+Q +T
Sbjct: 335 DREVVVVGATNRPDALDPALRRPGR-------FDREVVIGTPTLK----QRKEILQVIT 382
Score = 33.1 bits (74), Expect = 0.54
Identities = 22/67 (32%), Positives = 35/67 (52%), Gaps = 3/67 (4%)
Query: 54 ELIKSKKMAGRAVLLAGPPGTGKTALALAIAQELGSKVPFCPMVGSEVYSTEIKKTE-VL 112
E ++ + VLL GPPG KT L A+A F + G++++S + +E VL
Sbjct: 489 EFVRMGLTQPKGVLLYGPPGCAKTTLVRALA--TSCHCSFVSVSGADLFSPFVGDSEKVL 546
Query: 113 MENFRRA 119
+ FR+A
Sbjct: 547 SQIFRQA 553
>gi|157671927 spermatogenesis associated 5 [Homo sapiens]
Length = 893
Score = 44.3 bits (103), Expect = 2e-04
Identities = 30/65 (46%), Positives = 39/65 (60%), Gaps = 4/65 (6%)
Query: 54 ELIKSKKM-AGRAVLLAGPPGTGKTALALAIAQELGSKVPFC--PMVGSEVY-STEIKKT 109
EL KS + A R VLL GPPGTGKT +A A+A E+G+ V P + S+ Y TE K
Sbjct: 377 ELFKSYGIPAPRGVLLYGPPGTGKTMIARAVANEVGAYVSVINGPEIISKFYGETEAKLR 436
Query: 110 EVLME 114
++ E
Sbjct: 437 QIFAE 441
Score = 43.5 bits (101), Expect = 4e-04
Identities = 52/186 (27%), Positives = 84/186 (45%), Gaps = 32/186 (17%)
Query: 64 RAVLLAGPPGTGKTALALAIAQELGSKVPFCPMVGSEVYSTEIKKTE-VLMENFRRAIGL 122
+ VLL GPPG KT +A A+A E G + F + G E+ + + ++E + E FR+A
Sbjct: 662 KGVLLYGPPGCSKTMIAKALANESG--LNFLAIKGPELMNKYVGESERAVRETFRKA--- 716
Query: 123 RIKETKEVYEGEVTELTPCETENPMGGYGKTISHVIIGLKT-AKGTKQLKLDPSIFESLQ 181
R ++ E+ L E + +G G V+ L T G +QLK + + +
Sbjct: 717 RAVAPSIIFFDELDALA-VERGSSLGA-GNVADRVLAQLLTEMDGIEQLKDVTILAATNR 774
Query: 182 KERVEAGDVIYIEANSGAVKRQGRCDTYATEFDLEAEEYVPLPKGDVHKKKEIIQDVTLH 241
+R++ A+ R GR D YVPLP D ++EI + + H
Sbjct: 775 PDRIDK-----------ALMRPGRIDRII---------YVPLP--DAATRREIFK-LQFH 811
Query: 242 DLDVAN 247
+ V+N
Sbjct: 812 SMPVSN 817
>gi|7019569 vacuolar protein sorting factor 4A [Homo sapiens]
Length = 437
Score = 43.5 bits (101), Expect = 4e-04
Identities = 35/114 (30%), Positives = 53/114 (46%), Gaps = 10/114 (8%)
Query: 39 LVGQENAREACGVIV-------ELIKSKKMAGRAVLLAGPPGTGKTALALAIAQELGSKV 91
+ G E A+EA V L K+ R +LL GPPGTGK+ LA A+A E +
Sbjct: 129 VAGLEGAKEALKEAVILPIKFPHLFTGKRTPWRGILLFGPPGTGKSYLAKAVATEANNST 188
Query: 92 PFCPMVGSEVYSTEIKKTEVLMENFRRAIGLRIKETKEVYEGEVTELTPCETEN 145
F + S++ S + ++E L++N R + ++ EV L EN
Sbjct: 189 -FFSVSSSDLMSKWLGESEKLVKNLFEL--ARQHKPSIIFIDEVDSLCGSRNEN 239
>gi|45643125 nuclear VCP-like isoform 2 [Homo sapiens]
Length = 750
Score = 42.0 bits (97), Expect = 0.001
Identities = 30/106 (28%), Positives = 55/106 (51%), Gaps = 6/106 (5%)
Query: 66 VLLAGPPGTGKTALALAIAQELGSKVPFCPMVGSEVYSTEIKKTE-VLMENFRRAIGLRI 124
VLLAGPPG GKT LA A+A E G + F + G E+ + + ++E + + F+RA +
Sbjct: 512 VLLAGPPGCGKTLLAKAVANESG--LNFISVKGPELLNMYVGESERAVRQVFQRA---KN 566
Query: 125 KETKEVYEGEVTELTPCETENPMGGYGKTISHVIIGLKTAKGTKQL 170
++ EV L P ++ G + ++ ++ + + +Q+
Sbjct: 567 SAPCVIFFDEVDALCPRRSDRETGASVRVVNQLLTEMDGLEARQQV 612
Score = 37.7 bits (86), Expect = 0.022
Identities = 26/58 (44%), Positives = 33/58 (56%), Gaps = 3/58 (5%)
Query: 64 RAVLLAGPPGTGKTALALAIAQELGSKVPFCPMVGSEVYSTEIKKTE-VLMENFRRAI 120
R VLL GPPG GKT LA AIA EL +P + E+ S ++E L E F +A+
Sbjct: 193 RGVLLHGPPGCGKTLLAHAIAGEL--DLPILKVAAPEIVSGVSGESEQKLRELFEQAV 248
>gi|45643123 nuclear VCP-like isoform 1 [Homo sapiens]
Length = 856
Score = 42.0 bits (97), Expect = 0.001
Identities = 30/106 (28%), Positives = 55/106 (51%), Gaps = 6/106 (5%)
Query: 66 VLLAGPPGTGKTALALAIAQELGSKVPFCPMVGSEVYSTEIKKTE-VLMENFRRAIGLRI 124
VLLAGPPG GKT LA A+A E G + F + G E+ + + ++E + + F+RA +
Sbjct: 618 VLLAGPPGCGKTLLAKAVANESG--LNFISVKGPELLNMYVGESERAVRQVFQRA---KN 672
Query: 125 KETKEVYEGEVTELTPCETENPMGGYGKTISHVIIGLKTAKGTKQL 170
++ EV L P ++ G + ++ ++ + + +Q+
Sbjct: 673 SAPCVIFFDEVDALCPRRSDRETGASVRVVNQLLTEMDGLEARQQV 718
Score = 37.7 bits (86), Expect = 0.022
Identities = 26/58 (44%), Positives = 33/58 (56%), Gaps = 3/58 (5%)
Query: 64 RAVLLAGPPGTGKTALALAIAQELGSKVPFCPMVGSEVYSTEIKKTE-VLMENFRRAI 120
R VLL GPPG GKT LA AIA EL +P + E+ S ++E L E F +A+
Sbjct: 299 RGVLLHGPPGCGKTLLAHAIAGEL--DLPILKVAAPEIVSGVSGESEQKLRELFEQAV 354
>gi|40806170 spastin isoform 2 [Homo sapiens]
Length = 584
Score = 38.9 bits (89), Expect = 0.010
Identities = 23/55 (41%), Positives = 30/55 (54%), Gaps = 7/55 (12%)
Query: 39 LVGQENAREACGVIV-------ELIKSKKMAGRAVLLAGPPGTGKTALALAIAQE 86
+ GQ+ A++A IV EL + R +LL GPPG GKT LA A+A E
Sbjct: 312 IAGQDLAKQALQEIVILPSLRPELFTGLRAPARGLLLFGPPGNGKTMLAKAVAAE 366
>gi|4505725 peroxin1 [Homo sapiens]
Length = 1283
Score = 38.9 bits (89), Expect = 0.010
Identities = 31/103 (30%), Positives = 51/103 (49%), Gaps = 8/103 (7%)
Query: 66 VLLAGPPGTGKTALALAIAQELGSKVPFCPMVGSEVYSTEIKKTEVLMENFRRAIGLRIK 125
+LL GPPGTGKT LA IA+E S++ F + G E+ S I +E + R I +R +
Sbjct: 877 ILLYGPPGTGKTLLAGVIARE--SRMNFISVKGPELLSKYIGASEQAV----RDIFIRAQ 930
Query: 126 ETKE--VYEGEVTELTPCETENPMGGYGKTISHVIIGLKTAKG 166
K ++ E + P + G + ++ ++ L +G
Sbjct: 931 AAKPCILFFDEFESIAPRRGHDNTGVTDRVVNQLLTQLDGVEG 973
>gi|11875211 spastin isoform 1 [Homo sapiens]
Length = 616
Score = 38.9 bits (89), Expect = 0.010
Identities = 23/55 (41%), Positives = 30/55 (54%), Gaps = 7/55 (12%)
Query: 39 LVGQENAREACGVIV-------ELIKSKKMAGRAVLLAGPPGTGKTALALAIAQE 86
+ GQ+ A++A IV EL + R +LL GPPG GKT LA A+A E
Sbjct: 344 IAGQDLAKQALQEIVILPSLRPELFTGLRAPARGLLLFGPPGNGKTMLAKAVAAE 398
>gi|40806173 spastic paraplegia 7 isoform 2 [Homo sapiens]
Length = 489
Score = 38.9 bits (89), Expect = 0.010
Identities = 20/37 (54%), Positives = 24/37 (64%), Gaps = 2/37 (5%)
Query: 64 RAVLLAGPPGTGKTALALAIAQELGSKVPFCPMVGSE 100
+ LL GPPG GKT LA A+A E ++VPF M G E
Sbjct: 343 KGALLLGPPGCGKTLLAKAVATE--AQVPFLAMAGPE 377
>gi|4507173 spastic paraplegia 7 isoform 1 [Homo sapiens]
Length = 795
Score = 38.9 bits (89), Expect = 0.010
Identities = 20/37 (54%), Positives = 24/37 (64%), Gaps = 2/37 (5%)
Query: 64 RAVLLAGPPGTGKTALALAIAQELGSKVPFCPMVGSE 100
+ LL GPPG GKT LA A+A E ++VPF M G E
Sbjct: 343 KGALLLGPPGCGKTLLAKAVATE--AQVPFLAMAGPE 377
>gi|6005942 valosin-containing protein [Homo sapiens]
Length = 806
Score = 38.5 bits (88), Expect = 0.013
Identities = 24/56 (42%), Positives = 33/56 (58%), Gaps = 5/56 (8%)
Query: 64 RAVLLAGPPGTGKTALALAIAQELGSKVPFCPMVGSEVYSTEIKKTEVLMENFRRA 119
R +LL GPPGTGKT +A A+A E G+ F + G E+ S ++E N R+A
Sbjct: 239 RGILLYGPPGTGKTLIARAVANETGAF--FFLINGPEIMSKLAGESE---SNLRKA 289
Score = 32.3 bits (72), Expect = 0.91
Identities = 16/33 (48%), Positives = 19/33 (57%)
Query: 54 ELIKSKKMAGRAVLLAGPPGTGKTALALAIAQE 86
+ +K + VL GPPG GKT LA AIA E
Sbjct: 502 KFLKFGMTPSKGVLFYGPPGCGKTLLAKAIANE 534
>gi|5802970 AFG3 ATPase family gene 3-like 2 [Homo sapiens]
Length = 797
Score = 38.1 bits (87), Expect = 0.017
Identities = 20/37 (54%), Positives = 24/37 (64%), Gaps = 2/37 (5%)
Query: 64 RAVLLAGPPGTGKTALALAIAQELGSKVPFCPMVGSE 100
+ +L GPPGTGKT LA A A E + VPF + GSE
Sbjct: 342 KGAILTGPPGTGKTLLAKATAGE--ANVPFITVSGSE 376
>gi|62177112 katanin p60 subunit A-like 1 [Homo sapiens]
Length = 490
Score = 38.1 bits (87), Expect = 0.017
Identities = 17/36 (47%), Positives = 23/36 (63%)
Query: 54 ELIKSKKMAGRAVLLAGPPGTGKTALALAIAQELGS 89
+ K + + VL+ GPPGTGKT LA A+A E G+
Sbjct: 232 DFFKGIRRPWKGVLMVGPPGTGKTMLAKAVATECGT 267
>gi|14149767 katanin p60 subunit A-like 1 [Homo sapiens]
Length = 490
Score = 38.1 bits (87), Expect = 0.017
Identities = 17/36 (47%), Positives = 23/36 (63%)
Query: 54 ELIKSKKMAGRAVLLAGPPGTGKTALALAIAQELGS 89
+ K + + VL+ GPPGTGKT LA A+A E G+
Sbjct: 232 DFFKGIRRPWKGVLMVGPPGTGKTMLAKAVATECGT 267
>gi|24430151 proteasome 26S ATPase subunit 1 [Homo sapiens]
Length = 440
Score = 37.7 bits (86), Expect = 0.022
Identities = 19/38 (50%), Positives = 26/38 (68%), Gaps = 2/38 (5%)
Query: 64 RAVLLAGPPGTGKTALALAIAQELGSKVPFCPMVGSEV 101
+ V+L GPPGTGKT LA A+A + + F +VGSE+
Sbjct: 220 KGVILYGPPGTGKTLLAKAVANQ--TSATFLRVVGSEL 255
>gi|11321607 thyroid hormone receptor interactor 13 [Homo sapiens]
Length = 432
Score = 37.4 bits (85), Expect = 0.028
Identities = 17/24 (70%), Positives = 20/24 (83%)
Query: 64 RAVLLAGPPGTGKTALALAIAQEL 87
R VLL GPPGTGKT+L A+AQ+L
Sbjct: 173 RVVLLHGPPGTGKTSLCKALAQKL 196
>gi|5901990 katanin p60 subunit A 1 [Homo sapiens]
Length = 491
Score = 37.0 bits (84), Expect = 0.037
Identities = 17/33 (51%), Positives = 21/33 (63%)
Query: 54 ELIKSKKMAGRAVLLAGPPGTGKTALALAIAQE 86
E K + + VL+ GPPGTGKT LA A+A E
Sbjct: 233 EFFKGIRRPWKGVLMVGPPGTGKTLLAKAVATE 265
>gi|89064750 PREDICTED: similar to proteasome 26S ATPase subunit 4
[Homo sapiens]
Length = 414
Score = 35.8 bits (81), Expect = 0.083
Identities = 24/65 (36%), Positives = 34/65 (52%), Gaps = 6/65 (9%)
Query: 40 VGQENAREACGVIVELIKSKKMAG----RAVLLAGPPGTGKTALALAIAQELGSKVPFCP 95
+ ++ REA + + + K G R VL+ GPPG GKT LA A+A + F
Sbjct: 168 IQKQEVREAVELPLTHFELYKQIGIDPPRGVLMYGPPGCGKTMLAKAVAHH--TTAAFIR 225
Query: 96 MVGSE 100
+VGSE
Sbjct: 226 VVGSE 230
>gi|194018488 peroxisomal biogenesis factor 6 [Homo sapiens]
Length = 980
Score = 35.8 bits (81), Expect = 0.083
Identities = 23/55 (41%), Positives = 33/55 (60%), Gaps = 3/55 (5%)
Query: 66 VLLAGPPGTGKTALALAIAQELGSKVPFCPMVGSEVYSTEIKKTEV-LMENFRRA 119
+LL GPPGTGKT LA A+A E + F + G E+ + + ++E + E F RA
Sbjct: 740 LLLHGPPGTGKTLLAKAVATE--CSLTFLSVKGPELINMYVGQSEENVREVFARA 792
Score = 32.0 bits (71), Expect = 1.2
Identities = 21/57 (36%), Positives = 27/57 (47%), Gaps = 4/57 (7%)
Query: 65 AVLLAGPPGTGKTALALAIAQELG---SKVPFCPMVGSEVYSTEIKKTEVLMENFRR 118
+VLL GPPG GKT + A LG KVP C + +E K + + RR
Sbjct: 465 SVLLRGPPGCGKTTVVAAACSHLGLHLLKVP-CSSLCAESSGAVETKLQAIFSRARR 520
>gi|24497435 proteasome 26S ATPase subunit 5 [Homo sapiens]
Length = 406
Score = 35.8 bits (81), Expect = 0.083
Identities = 33/113 (29%), Positives = 52/113 (46%), Gaps = 9/113 (7%)
Query: 64 RAVLLAGPPGTGKTALALAIAQELGSKVPFCPMVGSEVYSTEI-KKTEVLMENFRRAIGL 122
+ VLL GPPGTGKT LA A+A + F + GSE+ I + ++ E F A
Sbjct: 184 KGVLLYGPPGTGKTLLARAVAHH--TDCTFIRVSGSELVQKFIGEGARMVRELFVMA--- 238
Query: 123 RIKETKEVYEGEVTELTPCETENPMGG---YGKTISHVIIGLKTAKGTKQLKL 172
R ++ E+ + E GG +T+ ++ L + TK +K+
Sbjct: 239 REHAPSIIFMDEIDSIGSSRLEGGSGGDSEVQRTMLELLNQLDGFEATKNIKV 291
>gi|24430155 proteasome 26S ATPase subunit 4 isoform 2 [Homo
sapiens]
Length = 387
Score = 35.8 bits (81), Expect = 0.083
Identities = 24/65 (36%), Positives = 34/65 (52%), Gaps = 6/65 (9%)
Query: 40 VGQENAREACGVIVELIKSKKMAG----RAVLLAGPPGTGKTALALAIAQELGSKVPFCP 95
+ ++ REA + + + K G R VL+ GPPG GKT LA A+A + F
Sbjct: 141 IQKQEVREAVELPLTHFELYKQIGIDPPRGVLMYGPPGCGKTMLAKAVAHH--TTAAFIR 198
Query: 96 MVGSE 100
+VGSE
Sbjct: 199 VVGSE 203
>gi|5729991 proteasome 26S ATPase subunit 4 isoform 1 [Homo sapiens]
Length = 418
Score = 35.8 bits (81), Expect = 0.083
Identities = 24/65 (36%), Positives = 34/65 (52%), Gaps = 6/65 (9%)
Query: 40 VGQENAREACGVIVELIKSKKMAG----RAVLLAGPPGTGKTALALAIAQELGSKVPFCP 95
+ ++ REA + + + K G R VL+ GPPG GKT LA A+A + F
Sbjct: 172 IQKQEVREAVELPLTHFELYKQIGIDPPRGVLMYGPPGCGKTMLAKAVAHH--TTAAFIR 229
Query: 96 MVGSE 100
+VGSE
Sbjct: 230 VVGSE 234
>gi|4506209 proteasome 26S ATPase subunit 2 [Homo sapiens]
Length = 433
Score = 35.8 bits (81), Expect = 0.083
Identities = 26/87 (29%), Positives = 43/87 (49%), Gaps = 6/87 (6%)
Query: 64 RAVLLAGPPGTGKTALALAIAQELGSKVPFCPMVGSEVYSTEI-KKTEVLMENFRRAIGL 122
+ VLL GPPGTGKT A A+A + F ++GSE+ + + ++ E F A
Sbjct: 210 KGVLLFGPPGTGKTLCARAVANR--TDACFIRVIGSELVQKYVGEGARMVRELFEMA--- 264
Query: 123 RIKETKEVYEGEVTELTPCETENPMGG 149
R K+ ++ E+ + ++ GG
Sbjct: 265 RTKKACLIFFDEIDAIGGARFDDGAGG 291
>gi|32528306 replication factor C large subunit [Homo sapiens]
Length = 1147
Score = 35.4 bits (80), Expect = 0.11
Identities = 15/25 (60%), Positives = 18/25 (72%)
Query: 64 RAVLLAGPPGTGKTALALAIAQELG 88
+A LL+GPPG GKT A + QELG
Sbjct: 644 KAALLSGPPGVGKTTTASLVCQELG 668
>gi|21361144 proteasome 26S ATPase subunit 3 [Homo sapiens]
Length = 439
Score = 35.4 bits (80), Expect = 0.11
Identities = 42/189 (22%), Positives = 80/189 (42%), Gaps = 31/189 (16%)
Query: 19 SHVKGLGLDESGLAKQAASGLVGQENAREACGVIVELIKSKKMAG------RAVLLAGPP 72
S VK + +DE + + G + ++ +++ + +K + VL+ GPP
Sbjct: 170 SRVKAMEVDERPTEQYSDIGGLDKQIQELVEAIVLPMNHKEKFENLGIQPPKGVLMYGPP 229
Query: 73 GTGKTALALAIAQELGSKVPFCPMVGSEVYSTEI----------------KKTEVLMENF 116
GTGKT LA A A + +K F + G ++ I K ++ +
Sbjct: 230 GTGKTLLARACAAQ--TKATFLKLAGPQLVQMFIGDGAKLVRDAFALAKEKAPSIIFIDE 287
Query: 117 RRAIGLRIKETKEVYEGEVTELTPCETENPMGGYGKTISHVIIGLKTAKGTKQLK-LDPS 175
AIG + ++++ + EV + T E N + G+ +K T ++ LDP+
Sbjct: 288 LDAIGTKRFDSEKAGDREV-QRTMLELLNQLDGFQPNTQ-----VKVIAATNRVDILDPA 341
Query: 176 IFESLQKER 184
+ S + +R
Sbjct: 342 LLRSGRLDR 350
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.315 0.133 0.368
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 15,661,373
Number of Sequences: 37866
Number of extensions: 658377
Number of successful extensions: 1464
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 75
Number of HSP's successfully gapped in prelim test: 14
Number of HSP's that attempted gapping in prelim test: 1358
Number of HSP's gapped (non-prelim): 114
length of query: 456
length of database: 18,247,518
effective HSP length: 106
effective length of query: 350
effective length of database: 14,233,722
effective search space: 4981802700
effective search space used: 4981802700
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 64 (29.3 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.