SHROOM1 25466

Name: SHROOM1	Sequence: fasta or formatted (847aa)		NCBI GI: 31442420
Description: shroom family member 1		Referenced in: PDZ Domain
Composition: Amino acid Percentage Count Longest homopolymer A alanine 12.2 103 3 C cysteine 1.7 14 1 D aspartate 4.4 37 2 E glutamate 7.1 60 2 F phenylalanine 1.8 15 1 G glycine 8.3 70 3 H histidine 1.8 15 2 I isoleucine 1.2 10 1 K lysine 1.7 14 2 L leucine 11.2 95 5 M methionine 1.1 9 1 N asparagine 1.5 13 2 P proline 12.5 106 2 Q glutamine 5.8 49 2 R arginine 8.4 71 2 S serine 7.8 66 3 T threonine 4.8 41 2 V valine 4.6 39 2 W tryptophan 1.2 10 1 Y tyrosine 1.2 10 1			Comparative genomics: Search single species RefSeq proteins at NCBI H. sapiens M. musculus D. rerio C. intestinalis S. purpuratus D. melanogaster C. elegans A. thaliana S. cerevisiae E. coli W3110 A. pernix K1 Search summary Figure data Additional searches of RefSeq proteins at NCBI All Eukaryotes Bacteria Archaea Viruses Primates Mammals Vertebrates
Related human proteins: Protein Relative score Description Self-match 1.000 shroom family member 1 SHROOM2 0.054 apical protein of Xenopus-like SHROOM3 0.050 shroom family member 3 protein SHROOM4 0.049 shroom family member 4 SRCAP 0.020 Snf2-related CBP activator protein CCDC88B 0.019 coiled-coil domain containing 88 KDM6B 0.017 lysine (K)-specific demethylase 6B SAMD1 0.015 sterile alpha motif domain containing 1 FLJ22184 0.015 PREDICTED: hypothetical protein LOC80164 SRRM2 0.015 splicing coactivator subunit SRm300 NACA 0.015 nascent polypeptide-associated complex alpha subuni... COL1A1 0.014 alpha 1 type I collagen preproprotein MICALL1 0.014 molecule interacting with Rab13 FGD1 0.014 faciogenital dysplasia protein PCLO 0.014 piccolo isoform 2 PCLO 0.014 piccolo isoform 1 FLJ22184 0.014 PREDICTED: hypothetical protein FLJ22184 FLJ22184 0.014 PREDICTED: hypothetical protein FLJ22184 SHANK3 0.013 SH3 and multiple ankyrin repeat domains 3 TSC22D2 0.013 TSC22 domain family, member 2 IRS2 0.013 insulin receptor substrate 2 BRSK1 0.012 BR serine/threonine kinase 1 CGN 0.012 cingulin SRRM1 0.012 serine/arginine repetitive matrix 1 SHANK1 0.011 SH3 and multiple ankyrin repeat domains 1 MLL2 0.011 myeloid/lymphoid or mixed-lineage leukemia 2 TAF4 0.011 TBP-associated factor 4 CASKIN2 0.011 cask-interacting protein 2 isoform b CASKIN2 0.011 cask-interacting protein 2 isoform a COL7A1 0.011 alpha 1 type VII collagen precursor Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.