Guide to the Human Genome
Home | Table of Contents | Search text | Search genes | Search sequences | Purchase | FAQ | Blog | Help

Search of human proteins with 44889483

BLASTP 2.2.11 [Jun-05-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= gi|44889483 cerebellar degeneration-related protein 1, 34kDa
[Homo sapiens]
         (262 letters)

Database: hs.faa 
           37,866 sequences; 18,247,518 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|44889483 cerebellar degeneration-related protein 1, 34kDa [Ho...   560   e-160
gi|210147567 hypothetical protein LOC220081 [Homo sapiens]             53   3e-07
gi|21361759 myotubularin related protein 8 [Homo sapiens]              35   0.066
gi|31317305 M-phase phosphoprotein 10 [Homo sapiens]                   34   0.11 
gi|155030232 proline, glutamic acid and leucine rich protein 1 [...    34   0.11 
gi|115527070 alpha 2 type VI collagen isoform 2C2a' precursor [H...    33   0.25 
gi|115527066 alpha 2 type VI collagen isoform 2C2a precursor [Ho...    33   0.25 
gi|115527062 alpha 2 type VI collagen isoform 2C2 precursor [Hom...    33   0.25 
gi|90669307 cyclin B3 isoform 3 [Homo sapiens]                         33   0.25 
gi|18780273 collagen, type XXI, alpha 1 precursor [Homo sapiens]       33   0.33 
gi|119508426 alpha 3 type IX collagen [Homo sapiens]                   33   0.33 
gi|4502961 alpha 1 type VII collagen precursor [Homo sapiens]          32   0.43 
gi|169636420 carbonic anhydrase IX precursor [Homo sapiens]            32   0.43 
gi|21361095 enhancer of zeste 2 isoform a [Homo sapiens]               32   0.43 
gi|100913220 alpha 1 type XVI collagen precursor [Homo sapiens]        32   0.56 
gi|116256354 alpha 2 type IV collagen preproprotein [Homo sapiens]     32   0.56 
gi|60498973 myelin transcription factor 1-like [Homo sapiens]          32   0.56 
gi|149944526 additional sex combs like 3 [Homo sapiens]                32   0.56 
gi|55956788 nucleolin [Homo sapiens]                                   32   0.73 
gi|148536823 type IV alpha 6 collagen isoform A precursor [Homo ...    31   0.96 
gi|32140760 collagen, type XXVII, alpha 1 [Homo sapiens]               31   0.96 
gi|16357503 type IV alpha 6 collagen isoform B precursor [Homo s...    31   0.96 
gi|115392133 collagen, type XXIV, alpha 1 [Homo sapiens]               31   0.96 
gi|183583553 collagen, type XXIX, alpha 1 [Homo sapiens]               31   1.3  
gi|4502951 collagen type III alpha 1 preproprotein [Homo sapiens]      31   1.3  
gi|15890086 type IV collagen alpha 5 isoform 2 precursor [Homo s...    31   1.3  
gi|4502955 type IV collagen alpha 5 isoform 1 precursor [Homo sa...    31   1.3  
gi|15890088 type IV collagen alpha 5 isoform 3 precursor [Homo s...    31   1.3  
gi|122937416 hypothetical protein LOC85452 [Homo sapiens]              30   1.6  
gi|111118976 collagen, type II, alpha 1 isoform 1 precursor [Hom...    30   2.1  

>gi|44889483 cerebellar degeneration-related protein 1, 34kDa [Homo
           sapiens]
          Length = 262

 Score =  560 bits (1442), Expect = e-160
 Identities = 262/262 (100%), Positives = 262/262 (100%)

Query: 1   MAWLEDVDFLEDVPLLEDIPLLEDVPLLEDVPLLEDTSRLEDINLMEDMALLEDVDLLED 60
           MAWLEDVDFLEDVPLLEDIPLLEDVPLLEDVPLLEDTSRLEDINLMEDMALLEDVDLLED
Sbjct: 1   MAWLEDVDFLEDVPLLEDIPLLEDVPLLEDVPLLEDTSRLEDINLMEDMALLEDVDLLED 60

Query: 61  TDFLEDLDFSEAMDLREDKDFLEDMDSLEDMALLEDVDLLEDTDFLEDPDFLEAIDLRED 120
           TDFLEDLDFSEAMDLREDKDFLEDMDSLEDMALLEDVDLLEDTDFLEDPDFLEAIDLRED
Sbjct: 61  TDFLEDLDFSEAMDLREDKDFLEDMDSLEDMALLEDVDLLEDTDFLEDPDFLEAIDLRED 120

Query: 121 KDFLEDMDSLEDLEAIGRCGFSGRHGFFGRRRFSGRPKLSGRLGLLGRRGFSGRLGGYWK 180
           KDFLEDMDSLEDLEAIGRCGFSGRHGFFGRRRFSGRPKLSGRLGLLGRRGFSGRLGGYWK
Sbjct: 121 KDFLEDMDSLEDLEAIGRCGFSGRHGFFGRRRFSGRPKLSGRLGLLGRRGFSGRLGGYWK 180

Query: 181 TWIFWKTWIFWKTWIFRKTYIGWKTWIFSGRCGLTGRPGFGGRRRFFWKTLTDWKTWISF 240
           TWIFWKTWIFWKTWIFRKTYIGWKTWIFSGRCGLTGRPGFGGRRRFFWKTLTDWKTWISF
Sbjct: 181 TWIFWKTWIFWKTWIFRKTYIGWKTWIFSGRCGLTGRPGFGGRRRFFWKTLTDWKTWISF 240

Query: 241 WKTLIDWKTWISFWKTLIDWKI 262
           WKTLIDWKTWISFWKTLIDWKI
Sbjct: 241 WKTLIDWKTWISFWKTLIDWKI 262


>gi|210147567 hypothetical protein LOC220081 [Homo sapiens]
          Length = 696

 Score = 52.8 bits (125), Expect = 3e-07
 Identities = 35/131 (26%), Positives = 63/131 (48%)

Query: 4   LEDVDFLEDVPLLEDIPLLEDVPLLEDVPLLEDTSRLEDINLMEDMALLEDVDLLEDTDF 63
           LED ++LE+   LE+   L     L++   L     LE+   +E    LE+ + +E+ ++
Sbjct: 56  LEDKEYLEEEEDLEEEEYLGKEEYLKEEEYLGKEEHLEEEEYLEKAGYLEEEEYIEEEEY 115

Query: 64  LEDLDFSEAMDLREDKDFLEDMDSLEDMALLEDVDLLEDTDFLEDPDFLEAIDLREDKDF 123
           L    + E  +    ++ LE+ + L     LE  D +E+ D+L    +LE  +    K +
Sbjct: 116 LGKEGYLEEEEYLGKEEHLEEEEYLGKEGYLEKEDYIEEVDYLGKKAYLEEEEYLGKKSY 175

Query: 124 LEDMDSLEDLE 134
           LE+  +LE  E
Sbjct: 176 LEEEKALEKEE 186



 Score = 50.1 bits (118), Expect = 2e-06
 Identities = 28/138 (20%), Positives = 72/138 (52%), Gaps = 6/138 (4%)

Query: 22  LEDVPLLEDVPLLEDTSRLEDINLMEDMALLEDVDLLEDTDFLEDLDFSEAMDLREDKDF 81
           L++  L ++ P   +   LED   +E+   LE+ + L   ++L++ ++    +  E++++
Sbjct: 38  LDEESLQDESPFSPEGESLEDKEYLEEEEDLEEEEYLGKEEYLKEEEYLGKEEHLEEEEY 97

Query: 82  LEDMDSLEDMALLEDVDLLEDTDFLEDPDFLEAIDLREDKDFL------EDMDSLEDLEA 135
           LE    LE+   +E+ + L    +LE+ ++L   +  E++++L      E  D +E+++ 
Sbjct: 98  LEKAGYLEEEEYIEEEEYLGKEGYLEEEEYLGKEEHLEEEEYLGKEGYLEKEDYIEEVDY 157

Query: 136 IGRCGFSGRHGFFGRRRF 153
           +G+  +     + G++ +
Sbjct: 158 LGKKAYLEEEEYLGKKSY 175



 Score = 50.1 bits (118), Expect = 2e-06
 Identities = 28/138 (20%), Positives = 70/138 (50%)

Query: 34  LEDTSRLEDINLMEDMALLEDVDLLEDTDFLEDLDFSEAMDLREDKDFLEDMDSLEDMAL 93
           L++ S  ++     +   LED + LE+ + LE+ ++    +  +++++L   + LE+   
Sbjct: 38  LDEESLQDESPFSPEGESLEDKEYLEEEEDLEEEEYLGKEEYLKEEEYLGKEEHLEEEEY 97

Query: 94  LEDVDLLEDTDFLEDPDFLEAIDLREDKDFLEDMDSLEDLEAIGRCGFSGRHGFFGRRRF 153
           LE    LE+ +++E+ ++L      E++++L   + LE+ E +G+ G+  +  +     +
Sbjct: 98  LEKAGYLEEEEYIEEEEYLGKEGYLEEEEYLGKEEHLEEEEYLGKEGYLEKEDYIEEVDY 157

Query: 154 SGRPKLSGRLGLLGRRGF 171
            G+         LG++ +
Sbjct: 158 LGKKAYLEEEEYLGKKSY 175



 Score = 49.7 bits (117), Expect = 3e-06
 Identities = 29/121 (23%), Positives = 62/121 (51%)

Query: 10  LEDVPLLEDIPLLEDVPLLEDVPLLEDTSRLEDINLMEDMALLEDVDLLEDTDFLEDLDF 69
           L++  L ++ P   +   LED   LE+   LE+   +     L++ + L   + LE+ ++
Sbjct: 38  LDEESLQDESPFSPEGESLEDKEYLEEEEDLEEEEYLGKEEYLKEEEYLGKEEHLEEEEY 97

Query: 70  SEAMDLREDKDFLEDMDSLEDMALLEDVDLLEDTDFLEDPDFLEAIDLREDKDFLEDMDS 129
            E     E+++++E+ + L     LE+ + L   + LE+ ++L      E +D++E++D 
Sbjct: 98  LEKAGYLEEEEYIEEEEYLGKEGYLEEEEYLGKEEHLEEEEYLGKEGYLEKEDYIEEVDY 157

Query: 130 L 130
           L
Sbjct: 158 L 158



 Score = 48.9 bits (115), Expect = 4e-06
 Identities = 34/135 (25%), Positives = 65/135 (48%)

Query: 4   LEDVDFLEDVPLLEDIPLLEDVPLLEDVPLLEDTSRLEDINLMEDMALLEDVDLLEDTDF 63
           L++    ++ P   +   LED   LE+   LE+   L     +++   L   + LE+ ++
Sbjct: 38  LDEESLQDESPFSPEGESLEDKEYLEEEEDLEEEEYLGKEEYLKEEEYLGKEEHLEEEEY 97

Query: 64  LEDLDFSEAMDLREDKDFLEDMDSLEDMALLEDVDLLEDTDFLEDPDFLEAIDLREDKDF 123
           LE   + E  +  E++++L     LE+   L   + LE+ ++L    +LE  D  E+ D+
Sbjct: 98  LEKAGYLEEEEYIEEEEYLGKEGYLEEEEYLGKEEHLEEEEYLGKEGYLEKEDYIEEVDY 157

Query: 124 LEDMDSLEDLEAIGR 138
           L     LE+ E +G+
Sbjct: 158 LGKKAYLEEEEYLGK 172



 Score = 48.9 bits (115), Expect = 4e-06
 Identities = 33/132 (25%), Positives = 65/132 (49%)

Query: 3   WLEDVDFLEDVPLLEDIPLLEDVPLLEDVPLLEDTSRLEDINLMEDMALLEDVDLLEDTD 62
           +L   ++L++   L     LE+   LE    LE+   +E+   +     LE+ + L   +
Sbjct: 73  YLGKEEYLKEEEYLGKEEHLEEEEYLEKAGYLEEEEYIEEEEYLGKEGYLEEEEYLGKEE 132

Query: 63  FLEDLDFSEAMDLREDKDFLEDMDSLEDMALLEDVDLLEDTDFLEDPDFLEAIDLREDKD 122
            LE+ ++       E +D++E++D L   A LE+ + L    +LE+   LE  +  E+++
Sbjct: 133 HLEEEEYLGKEGYLEKEDYIEEVDYLGKKAYLEEEEYLGKKSYLEEEKALEKEENLEEEE 192

Query: 123 FLEDMDSLEDLE 134
            LE  ++L+  E
Sbjct: 193 ALEKEENLDGKE 204



 Score = 43.9 bits (102), Expect = 1e-04
 Identities = 32/119 (26%), Positives = 54/119 (45%)

Query: 3   WLEDVDFLEDVPLLEDIPLLEDVPLLEDVPLLEDTSRLEDINLMEDMALLEDVDLLEDTD 62
           +LE   +LE+   +E+   L     LE+   L     LE+   +     LE  D +E+ D
Sbjct: 97  YLEKAGYLEEEEYIEEEEYLGKEGYLEEEEYLGKEEHLEEEEYLGKEGYLEKEDYIEEVD 156

Query: 63  FLEDLDFSEAMDLREDKDFLEDMDSLEDMALLEDVDLLEDTDFLEDPDFLEAIDLREDK 121
           +L    + E  +    K +LE+  +LE    LE+ + LE  + L+  + L    L+E K
Sbjct: 157 YLGKKAYLEEEEYLGKKSYLEEEKALEKEENLEEEEALEKEENLDGKENLYKKYLKEPK 215



 Score = 43.5 bits (101), Expect = 2e-04
 Identities = 33/122 (27%), Positives = 57/122 (46%)

Query: 3   WLEDVDFLEDVPLLEDIPLLEDVPLLEDVPLLEDTSRLEDINLMEDMALLEDVDLLEDTD 62
           +L   + LE+   LE    LE+   +E+   L     LE+   +     LE+ + L    
Sbjct: 85  YLGKEEHLEEEEYLEKAGYLEEEEYIEEEEYLGKEGYLEEEEYLGKEEHLEEEEYLGKEG 144

Query: 63  FLEDLDFSEAMDLREDKDFLEDMDSLEDMALLEDVDLLEDTDFLEDPDFLEAIDLREDKD 122
           +LE  D+ E +D    K +LE+ + L   + LE+   LE  + LE+ + LE  +  + K+
Sbjct: 145 YLEKEDYIEEVDYLGKKAYLEEEEYLGKKSYLEEEKALEKEENLEEEEALEKEENLDGKE 204

Query: 123 FL 124
            L
Sbjct: 205 NL 206



 Score = 41.2 bits (95), Expect = 0.001
 Identities = 32/128 (25%), Positives = 59/128 (46%)

Query: 3   WLEDVDFLEDVPLLEDIPLLEDVPLLEDVPLLEDTSRLEDINLMEDMALLEDVDLLEDTD 62
           +L++ ++L     LE+   LE    LE+   +E+   L     +E+   L   + LE+ +
Sbjct: 79  YLKEEEYLGKEEHLEEEEYLEKAGYLEEEEYIEEEEYLGKEGYLEEEEYLGKEEHLEEEE 138

Query: 63  FLEDLDFSEAMDLREDKDFLEDMDSLEDMALLEDVDLLEDTDFLEDPDFLEAIDLREDKD 122
           +L    + E  D  E+ D+L     LE+   L     LE+   LE  + LE  +  E ++
Sbjct: 139 YLGKEGYLEKEDYIEEVDYLGKKAYLEEEEYLGKKSYLEEEKALEKEENLEEEEALEKEE 198

Query: 123 FLEDMDSL 130
            L+  ++L
Sbjct: 199 NLDGKENL 206



 Score = 34.3 bits (77), Expect = 0.11
 Identities = 31/151 (20%), Positives = 68/151 (45%), Gaps = 24/151 (15%)

Query: 76  REDKDFLEDMDSLEDMALLE-DVDLLEDTDFLEDPDFLEAIDL----------------- 117
           +ED +   D +SL+D +    + + LED ++LE+ + LE  +                  
Sbjct: 31  KEDTEVELDEESLQDESPFSPEGESLEDKEYLEEEEDLEEEEYLGKEEYLKEEEYLGKEE 90

Query: 118 -REDKDFLEDMDSLEDLEAIGRCGFSGRHGFFGRRRFSGRPKLSGRLGLLGRRGFSGRLG 176
             E++++LE    LE+ E I    + G+ G+     + G+ +       LG+ G+  +  
Sbjct: 91  HLEEEEYLEKAGYLEEEEYIEEEEYLGKEGYLEEEEYLGKEEHLEEEEYLGKEGYLEK-- 148

Query: 177 GYWKTWIFWKTWIFWKTWIFRKTYIGWKTWI 207
              + +I    ++  K ++  + Y+G K+++
Sbjct: 149 ---EDYIEEVDYLGKKAYLEEEEYLGKKSYL 176


>gi|21361759 myotubularin related protein 8 [Homo sapiens]
          Length = 704

 Score = 35.0 bits (79), Expect = 0.066
 Identities = 23/65 (35%), Positives = 29/65 (44%)

Query: 112 LEAIDLREDKDFLEDMDSLEDLEAIGRCGFSGRHGFFGRRRFSGRPKLSGRLGLLGRRGF 171
           L AI++  D    E M    D+      GFS   G  G    S    +SG LG+   RGF
Sbjct: 619 LRAINISGDVGISEAMGISGDMCTFEATGFSKDLGICGAMDISEATGISGNLGISEARGF 678

Query: 172 SGRLG 176
           SG +G
Sbjct: 679 SGDMG 683



 Score = 30.4 bits (67), Expect = 1.6
 Identities = 18/62 (29%), Positives = 28/62 (45%)

Query: 42  DINLMEDMALLEDVDLLEDTDFLEDLDFSEAMDLREDKDFLEDMDSLEDMALLEDVDLLE 101
           D+ + E M +  D+   E T F +DL    AMD+ E      ++   E      D+ +L 
Sbjct: 627 DVGISEAMGISGDMCTFEATGFSKDLGICGAMDISEATGISGNLGISEARGFSGDMGILG 686

Query: 102 DT 103
           DT
Sbjct: 687 DT 688


>gi|31317305 M-phase phosphoprotein 10 [Homo sapiens]
          Length = 681

 Score = 34.3 bits (77), Expect = 0.11
 Identities = 41/166 (24%), Positives = 69/166 (41%), Gaps = 46/166 (27%)

Query: 23  EDVPLLEDVPLLEDTSRLED----------------INLMEDMALLEDVDLLEDT----- 61
           ED  L  D+  LE  S++++                  L E  A LE+++  E+      
Sbjct: 169 EDSDLDFDISKLEQQSKVQNKGQGKPREKSIVDDKFFKLSEMEAYLENIEKEEERKDDND 228

Query: 62  DFLEDLDFSEAMDLRED---------------------KDFLEDMDSLEDMALLEDVDL- 99
           +  ED+DF E +D  ED                     KDF + ++S ED+  + D +L 
Sbjct: 229 EEEEDIDFFEDIDSDEDEGGLFGSKKLKSGKSSRNLKYKDFFDPVESDEDITNVHDDELD 288

Query: 100 --LEDTDFL-EDPDFLEAIDLREDKDFLEDMDSLEDLEAIGRCGFS 142
              ED +   E+ + L   +  ED D  E+ D+ +  E++ R  F+
Sbjct: 289 SNKEDDEIAEEEAEELSISETDEDDDLQENEDNKQHKESLKRVTFA 334



 Score = 31.2 bits (69), Expect = 0.96
 Identities = 43/147 (29%), Positives = 64/147 (43%), Gaps = 34/147 (23%)

Query: 17  EDIPLLEDVPLLEDVPLLEDTSRLE--DINLMEDMALLEDVDL-LEDTDFLEDLDFSEAM 73
           EDI LL   P  E+    ED S +E  D   +ED+   E  D+  +D +  E  + S   
Sbjct: 102 EDISLL---PESEEQEREEDGSEIEADDKEDLEDLEEEEVSDMGNDDPEMGERAENSSKS 158

Query: 74  DLR-------EDKDFLEDMDSLEDMALLE--------DVDLLEDTDFL--EDPDFLEAID 116
           DLR       ED D   D+  LE  + ++        +  +++D  F   E   +LE I+
Sbjct: 159 DLRKSPVFSDEDSDLDFDISKLEQQSKVQNKGQGKPREKSIVDDKFFKLSEMEAYLENIE 218

Query: 117 LREDK-----------DFLEDMDSLED 132
             E++           DF ED+DS ED
Sbjct: 219 KEEERKDDNDEEEEDIDFFEDIDSDED 245


>gi|155030232 proline, glutamic acid and leucine rich protein 1
           [Homo sapiens]
          Length = 1130

 Score = 34.3 bits (77), Expect = 0.11
 Identities = 24/91 (26%), Positives = 49/91 (53%), Gaps = 1/91 (1%)

Query: 45  LMEDMALLEDVDLLEDTDFLEDLDFSEAMDLREDKDFLEDMDSLEDMALLEDVDLLE-DT 103
           L ED+ ++      E+ +  E+ +  E  +  E++DF E+ +  E+    E+ +  E + 
Sbjct: 874 LEEDLTVININSSDEEEEEEEEEEEEEEEEEEEEEDFEEEEEDEEEYFEEEEEEEEEFEE 933

Query: 104 DFLEDPDFLEAIDLREDKDFLEDMDSLEDLE 134
           +F E+   LE  +  ED++  E+++ +EDLE
Sbjct: 934 EFEEEEGELEEEEEEEDEEEEEELEEVEDLE 964


>gi|115527070 alpha 2 type VI collagen isoform 2C2a' precursor [Homo
           sapiens]
          Length = 828

 Score = 33.1 bits (74), Expect = 0.25
 Identities = 16/37 (43%), Positives = 21/37 (56%)

Query: 140 GFSGRHGFFGRRRFSGRPKLSGRLGLLGRRGFSGRLG 176
           GF G  G FG     G P L+G+ G  G++G  GR+G
Sbjct: 304 GFKGEKGEFGADGRKGAPGLAGKNGTDGQKGKLGRIG 340


>gi|115527066 alpha 2 type VI collagen isoform 2C2a precursor [Homo
           sapiens]
          Length = 918

 Score = 33.1 bits (74), Expect = 0.25
 Identities = 16/37 (43%), Positives = 21/37 (56%)

Query: 140 GFSGRHGFFGRRRFSGRPKLSGRLGLLGRRGFSGRLG 176
           GF G  G FG     G P L+G+ G  G++G  GR+G
Sbjct: 304 GFKGEKGEFGADGRKGAPGLAGKNGTDGQKGKLGRIG 340


>gi|115527062 alpha 2 type VI collagen isoform 2C2 precursor [Homo
           sapiens]
          Length = 1019

 Score = 33.1 bits (74), Expect = 0.25
 Identities = 16/37 (43%), Positives = 21/37 (56%)

Query: 140 GFSGRHGFFGRRRFSGRPKLSGRLGLLGRRGFSGRLG 176
           GF G  G FG     G P L+G+ G  G++G  GR+G
Sbjct: 304 GFKGEKGEFGADGRKGAPGLAGKNGTDGQKGKLGRIG 340


>gi|90669307 cyclin B3 isoform 3 [Homo sapiens]
          Length = 1395

 Score = 33.1 bits (74), Expect = 0.25
 Identities = 25/120 (20%), Positives = 56/120 (46%), Gaps = 13/120 (10%)

Query: 5   EDVDFLEDVPLLEDIPLLEDVPLLEDVPLLEDTSRLEDINLMEDMALLEDVDLLEDTDFL 64
           E+        +L++ P +ED  L+     L+  S  E+++L+E +  L++    +D   +
Sbjct: 149 EEASLFRKPLVLKEEPTIEDETLINKSLSLKKCSNHEEVSLLEKLQPLQEESDSDDAFVI 208

Query: 65  EDLDF------------SEAMDLREDKDFLEDMDSLEDMAL-LEDVDLLEDTDFLEDPDF 111
           E + F             + + L++     +   S ++ +L ++DV++ ED+ F+E   F
Sbjct: 209 EPMTFKKTHKTEEAAITKKTLSLKKKMCASQRKQSCQEESLAVQDVNMEEDSFFMESMSF 268



 Score = 29.6 bits (65), Expect = 2.8
 Identities = 17/87 (19%), Positives = 38/87 (43%)

Query: 19  IPLLEDVPLLEDVPLLEDTSRLEDINLMEDMALLEDVDLLEDTDFLEDLDFSEAMDLRED 78
           +P + + PL+ D+     T   E+ +L     +L++   +ED   +      +     E+
Sbjct: 127 VPNIMEKPLILDISTTSKTPNTEEASLFRKPLVLKEEPTIEDETLINKSLSLKKCSNHEE 186

Query: 79  KDFLEDMDSLEDMALLEDVDLLEDTDF 105
              LE +  L++ +  +D  ++E   F
Sbjct: 187 VSLLEKLQPLQEESDSDDAFVIEPMTF 213


>gi|18780273 collagen, type XXI, alpha 1 precursor [Homo sapiens]
          Length = 957

 Score = 32.7 bits (73), Expect = 0.33
 Identities = 15/40 (37%), Positives = 19/40 (47%)

Query: 137 GRCGFSGRHGFFGRRRFSGRPKLSGRLGLLGRRGFSGRLG 176
           G+ G  G HG  G R   G P + G +G  G  G  G +G
Sbjct: 722 GQQGIQGHHGAKGERGEKGEPGVRGAIGSKGESGVDGLMG 761



 Score = 29.3 bits (64), Expect = 3.6
 Identities = 16/40 (40%), Positives = 19/40 (47%)

Query: 137 GRCGFSGRHGFFGRRRFSGRPKLSGRLGLLGRRGFSGRLG 176
           G  G  G  GF G    +G P   G+ GL+G  GF G  G
Sbjct: 551 GAKGEKGNAGFPGLPGPAGEPGRHGKDGLMGSPGFKGEAG 590



 Score = 28.9 bits (63), Expect = 4.8
 Identities = 19/43 (44%), Positives = 20/43 (46%), Gaps = 1/43 (2%)

Query: 137 GRCGFSGRHGFFGRRRFSGRPKLSGRLGLLGRRGFSGRLG-GY 178
           G  G  GR G  G     GRP + G  GL GR G  G  G GY
Sbjct: 843 GLPGLPGRDGVPGLVGVPGRPGVRGLKGLPGRNGEKGSQGFGY 885


>gi|119508426 alpha 3 type IX collagen [Homo sapiens]
          Length = 684

 Score = 32.7 bits (73), Expect = 0.33
 Identities = 17/40 (42%), Positives = 23/40 (57%)

Query: 137 GRCGFSGRHGFFGRRRFSGRPKLSGRLGLLGRRGFSGRLG 176
           G+ G +GR+G  G +  +G P L GR G  G +G  GR G
Sbjct: 316 GQKGEAGRNGAPGEKGPNGLPGLPGRAGSKGEKGERGRAG 355



 Score = 29.3 bits (64), Expect = 3.6
 Identities = 16/40 (40%), Positives = 19/40 (47%)

Query: 137 GRCGFSGRHGFFGRRRFSGRPKLSGRLGLLGRRGFSGRLG 176
           G  G  GR G  G    SG P + G  G+ G RG +G  G
Sbjct: 346 GEKGERGRAGELGEAGPSGEPGVPGDAGMPGERGEAGHRG 385


>gi|4502961 alpha 1 type VII collagen precursor [Homo sapiens]
          Length = 2944

 Score = 32.3 bits (72), Expect = 0.43
 Identities = 16/40 (40%), Positives = 19/40 (47%)

Query: 137  GRCGFSGRHGFFGRRRFSGRPKLSGRLGLLGRRGFSGRLG 176
            G CG  G  G  G     GRP L+G  G +G  G  G+ G
Sbjct: 2632 GACGLDGEKGDKGEAGPPGRPGLAGHKGEMGEPGVPGQSG 2671


>gi|169636420 carbonic anhydrase IX precursor [Homo sapiens]
          Length = 459

 Score = 32.3 bits (72), Expect = 0.43
 Identities = 21/55 (38%), Positives = 29/55 (52%)

Query: 5   EDVDFLEDVPLLEDIPLLEDVPLLEDVPLLEDTSRLEDINLMEDMALLEDVDLLE 59
           ED+   ED P  ED P  ED+P  ED+P  ED   ++  +  E    LED+  +E
Sbjct: 63  EDLPSEEDSPREEDPPGEEDLPGEEDLPGEEDLPEVKPKSEEEGSLKLEDLPTVE 117



 Score = 32.0 bits (71), Expect = 0.56
 Identities = 26/63 (41%), Positives = 32/63 (50%), Gaps = 1/63 (1%)

Query: 11  EDVPL-LEDIPLLEDVPLLEDVPLLEDTSRLEDINLMEDMALLEDVDLLEDTDFLEDLDF 69
           ED PL  ED+P  ED P  ED P  ED    ED+   ED+  ++     E +  LEDL  
Sbjct: 56  EDDPLGEEDLPSEEDSPREEDPPGEEDLPGEEDLPGEEDLPEVKPKSEEEGSLKLEDLPT 115

Query: 70  SEA 72
            EA
Sbjct: 116 VEA 118


>gi|21361095 enhancer of zeste 2 isoform a [Homo sapiens]
          Length = 751

 Score = 32.3 bits (72), Expect = 0.43
 Identities = 30/124 (24%), Positives = 59/124 (47%), Gaps = 7/124 (5%)

Query: 6   DVDFLEDVPLLEDIPLLEDVPLLEDVPLLEDTSRLEDINLMEDMALLEDVDLLEDTDFLE 65
           D+DF   V  L+ +  +  VP++     L+    +ED  ++ ++  + D  L +D  F+E
Sbjct: 88  DLDFPTQVIPLKTLNAVASVPIMYSWSPLQQNFMVEDETVLHNIPYMGDEVLDQDGTFIE 147

Query: 66  DLDFSEAMDLREDKD--FLEDMDSLEDMALLEDVDLLEDTDFLEDPDFLE-----AIDLR 118
           +L  +    +  D++  F+ D   +E +  L   +  +D D  +DP+  E       D R
Sbjct: 148 ELIKNYDGKVHGDRECGFINDEIFVELVNALGQYNDDDDDDDGDDPEEREEKQKDLEDHR 207

Query: 119 EDKD 122
           +DK+
Sbjct: 208 DDKE 211


>gi|100913220 alpha 1 type XVI collagen precursor [Homo sapiens]
          Length = 1604

 Score = 32.0 bits (71), Expect = 0.56
 Identities = 17/47 (36%), Positives = 25/47 (53%)

Query: 135  AIGRCGFSGRHGFFGRRRFSGRPKLSGRLGLLGRRGFSGRLGGYWKT 181
            A G+ G  G+ GF+G     G P  +G+ G  G +G +G  GG  K+
Sbjct: 1348 AAGKEGPPGKQGFYGPPGPKGDPGAAGQKGQAGEKGRAGMPGGPGKS 1394



 Score = 31.6 bits (70), Expect = 0.73
 Identities = 19/47 (40%), Positives = 24/47 (51%)

Query: 130  LEDLEAIGRCGFSGRHGFFGRRRFSGRPKLSGRLGLLGRRGFSGRLG 176
            +E   A GR G  G+ G  GR    G P L G++G  GR+G  G  G
Sbjct: 1466 MEMAAAPGRPGPPGKDGAPGRPGAPGSPGLPGQIGREGRQGLPGVRG 1512



 Score = 28.9 bits (63), Expect = 4.8
 Identities = 15/40 (37%), Positives = 19/40 (47%)

Query: 137  GRCGFSGRHGFFGRRRFSGRPKLSGRLGLLGRRGFSGRLG 176
            G  G  G  G  G+    G P  +G  GL+G  GF G+ G
Sbjct: 1210 GPAGLDGLDGKDGKPGLRGDPGPAGPPGLMGPPGFKGKTG 1249


>gi|116256354 alpha 2 type IV collagen preproprotein [Homo sapiens]
          Length = 1712

 Score = 32.0 bits (71), Expect = 0.56
 Identities = 26/88 (29%), Positives = 29/88 (32%), Gaps = 31/88 (35%)

Query: 137 GRCGFSGRHGFFGRRRFSGRPKLSGRLGLLGRRGFSGRLGGYWKTWIFWKTWIFWKTWIF 196
           G  GF+G  G  G   F G   + G  GL G RG  G  G                    
Sbjct: 890 GDAGFTGEQGHPGSPGFKGIDGMPGTPGLKGDRGSPGMDG-------------------- 929

Query: 197 RKTYIGWKTWIFSGRCGLTGRPGFGGRR 224
                      F G  GL GRPGF G +
Sbjct: 930 -----------FQGMPGLKGRPGFPGSK 946



 Score = 30.0 bits (66), Expect = 2.1
 Identities = 27/85 (31%), Positives = 35/85 (41%), Gaps = 13/85 (15%)

Query: 140 GFSGRHGFFGRRRFSGRPKLSGRLGLLGRRGFSGRLGGYWKTWIFWKTWIFWKTWIFRKT 199
           G  G+ G  G + ++G P L G  GL GR+G  G  G    T          K  +  + 
Sbjct: 58  GGRGQPGPVGPQGYNGPPGLQGFPGLQGRKGDKGERGAPGVTGP--------KGDVGARG 109

Query: 200 YIGWKTWIFSGRCGLTGRPGFGGRR 224
             G     F G  G+ G PG GG R
Sbjct: 110 VSG-----FPGADGIPGHPGQGGPR 129



 Score = 29.6 bits (65), Expect = 2.8
 Identities = 25/88 (28%), Positives = 27/88 (30%), Gaps = 31/88 (35%)

Query: 137 GRCGFSGRHGFFGRRRFSGRPKLSGRLGLLGRRGFSGRLGGYWKTWIFWKTWIFWKTWIF 196
           G  G  G  G  G   F G P L GR G  G +G +G  G                    
Sbjct: 914 GTPGLKGDRGSPGMDGFQGMPGLKGRPGFPGSKGEAGFFG-------------------- 953

Query: 197 RKTYIGWKTWIFSGRCGLTGRPGFGGRR 224
                        G  GL G PGF G R
Sbjct: 954 -----------IPGLKGLAGEPGFKGSR 970



 Score = 28.5 bits (62), Expect = 6.2
 Identities = 16/40 (40%), Positives = 19/40 (47%)

Query: 137 GRCGFSGRHGFFGRRRFSGRPKLSGRLGLLGRRGFSGRLG 176
           G  G  GR GF G +  +G   + G  GL G  GF G  G
Sbjct: 932 GMPGLKGRPGFPGSKGEAGFFGIPGLKGLAGEPGFKGSRG 971



 Score = 28.1 bits (61), Expect = 8.1
 Identities = 17/40 (42%), Positives = 19/40 (47%), Gaps = 3/40 (7%)

Query: 137  GRCGFSGRHGFFGRRRFSGRPKLSGRLGLLGRRGFSGRLG 176
            G  G +G  GF G R   G P   GR GL G  G +G  G
Sbjct: 1055 GPPGITGFPGFIGSRGDKGAP---GRAGLYGEIGATGDFG 1091


>gi|60498973 myelin transcription factor 1-like [Homo sapiens]
          Length = 1184

 Score = 32.0 bits (71), Expect = 0.56
 Identities = 23/83 (27%), Positives = 41/83 (49%), Gaps = 3/83 (3%)

Query: 55  VDLLEDTDFLEDLDFSE---AMDLREDKDFLEDMDSLEDMALLEDVDLLEDTDFLEDPDF 111
           VD  +D+D  ED+D  E     +  ED D   D D  ++    E+ + +E+ D  +D D 
Sbjct: 87  VDECDDSDGTEDMDEKEEDEGEEYSEDNDEPGDEDEEDEEGDREEEEEIEEEDEDDDEDG 146

Query: 112 LEAIDLREDKDFLEDMDSLEDLE 134
            +  D  E+++  E+ +  E+ E
Sbjct: 147 EDVEDEEEEEEEEEEEEEEEENE 169



 Score = 28.9 bits (63), Expect = 4.8
 Identities = 20/63 (31%), Positives = 32/63 (50%), Gaps = 3/63 (4%)

Query: 70  SEAMDLREDKDFLEDMDSLEDMALLEDVDLLEDTDFLEDPDFLEAIDLREDKDFLEDMDS 129
           S ++D  +D D  EDMD  E+    E  +  ED D   D D  +    RE+++ +E+ D 
Sbjct: 84  SSSVDECDDSDGTEDMDEKEED---EGEEYSEDNDEPGDEDEEDEEGDREEEEEIEEEDE 140

Query: 130 LED 132
            +D
Sbjct: 141 DDD 143


>gi|149944526 additional sex combs like 3 [Homo sapiens]
          Length = 2248

 Score = 32.0 bits (71), Expect = 0.56
 Identities = 13/58 (22%), Positives = 31/58 (53%)

Query: 10  LEDVPLLEDIPLLEDVPLLEDVPLLEDTSRLEDINLMEDMALLEDVDLLEDTDFLEDL 67
           + +  L+ ++PL  +   + ++PL  +TS + D+ L  + + +  + L  +T F+  L
Sbjct: 689 ISEASLMSNLPLTSEASPVSNLPLTSETSPMSDLPLTSETSSVSSMLLTSETTFVSSL 746



 Score = 28.9 bits (63), Expect = 4.8
 Identities = 15/82 (18%), Positives = 38/82 (46%), Gaps = 6/82 (7%)

Query: 4   LEDVDFLEDVPL------LEDIPLLEDVPLLEDVPLLEDTSRLEDINLMEDMALLEDVDL 57
           + +   + ++PL      + ++PL  +   + D+PL  +TS +  + L  +   +  + L
Sbjct: 689 ISEASLMSNLPLTSEASPVSNLPLTSETSPMSDLPLTSETSSVSSMLLTSETTFVSSLPL 748

Query: 58  LEDTDFLEDLDFSEAMDLREDK 79
             +T  + +   +E M  ++ K
Sbjct: 749 PSETSPISNSSINERMAHQQRK 770


>gi|55956788 nucleolin [Homo sapiens]
          Length = 710

 Score = 31.6 bits (70), Expect = 0.73
 Identities = 28/78 (35%), Positives = 36/78 (46%), Gaps = 6/78 (7%)

Query: 104 DFLEDPDFLEAIDLREDKDFLEDMDSLEDLEAIGRCGFSGRHGFFGRRRFSGR---PKLS 160
           DF  + D   A +  ED +   +  +L+  +  G  GF GR G  GR  F GR       
Sbjct: 616 DFNSEEDAKAAKEAMEDGEIDGNKVTLDWAKPKGEGGFGGRGG--GRGGFGGRGGGRGGR 673

Query: 161 GRLGLLGRRGFSGRLGGY 178
           G  G  GR GF GR GG+
Sbjct: 674 GGFGGRGRGGFGGR-GGF 690



 Score = 28.5 bits (62), Expect = 6.2
 Identities = 25/73 (34%), Positives = 34/73 (46%), Gaps = 4/73 (5%)

Query: 59  EDTDFLEDLDFSEAMDLREDKDFLEDMDSLEDMAL--LEDVDLLEDTDFLEDPDFLEAID 116
           ED+D  ED D  E  D  +D+D  ED D +E  A+         ED D  +D D  +  D
Sbjct: 143 EDSDEEEDDDSEE--DEEDDEDEDEDEDEIEPAAMKAAAAAPASEDEDDEDDEDDEDDDD 200

Query: 117 LREDKDFLEDMDS 129
             ED    E M++
Sbjct: 201 DEEDDSEEEAMET 213


>gi|148536823 type IV alpha 6 collagen isoform A precursor [Homo
            sapiens]
          Length = 1691

 Score = 31.2 bits (69), Expect = 0.96
 Identities = 17/40 (42%), Positives = 21/40 (52%)

Query: 137  GRCGFSGRHGFFGRRRFSGRPKLSGRLGLLGRRGFSGRLG 176
            GR G  G  GF G +   G+  +SG +GL G  GF G  G
Sbjct: 1097 GRDGLIGNIGFPGNKGEDGKVGVSGDVGLPGAPGFPGVAG 1136



 Score = 30.4 bits (67), Expect = 1.6
 Identities = 21/44 (47%), Positives = 23/44 (52%), Gaps = 3/44 (6%)

Query: 135 AIGRCGFSGRHGFFGRRRFSGRPKLSGRLGLLGRRGFSGRLGGY 178
           A GR G  G  G  G + F+G   LSG   L G RGF G LG Y
Sbjct: 48  ARGRPGPIGIQGPTGPQGFTGSTGLSG---LKGERGFPGLLGPY 88



 Score = 28.1 bits (61), Expect = 8.1
 Identities = 15/40 (37%), Positives = 19/40 (47%)

Query: 137 GRCGFSGRHGFFGRRRFSGRPKLSGRLGLLGRRGFSGRLG 176
           G  G +G  GF G     G   + G+ GLLG +G  G  G
Sbjct: 765 GLQGLTGHKGFLGDSGLPGLKGVHGKPGLLGPKGERGSPG 804


>gi|32140760 collagen, type XXVII, alpha 1 [Homo sapiens]
          Length = 1860

 Score = 31.2 bits (69), Expect = 0.96
 Identities = 18/40 (45%), Positives = 21/40 (52%), Gaps = 3/40 (7%)

Query: 137  GRCGFSGRHGFFGRRRFSGRPKLSGRLGLLGRRGFSGRLG 176
            GR GF GR G  G     G P   GR G +G +GF G +G
Sbjct: 964  GRKGFPGRPGLDG---VKGEPGDPGRPGPVGEQGFMGFIG 1000



 Score = 30.8 bits (68), Expect = 1.3
 Identities = 17/40 (42%), Positives = 20/40 (50%)

Query: 137  GRCGFSGRHGFFGRRRFSGRPKLSGRLGLLGRRGFSGRLG 176
            G  G +G  G  G   F G   L G+LG  G+RG  GR G
Sbjct: 1475 GNPGVAGLPGAQGPPGFKGESGLPGQLGPPGKRGTEGRTG 1514



 Score = 29.3 bits (64), Expect = 3.6
 Identities = 17/42 (40%), Positives = 21/42 (50%)

Query: 135  AIGRCGFSGRHGFFGRRRFSGRPKLSGRLGLLGRRGFSGRLG 176
            A G  G  G+ G  GRR   G   L G  G++GR+G  G  G
Sbjct: 1401 AEGPKGKQGKAGAPGRRGVQGLQGLPGPRGVVGRQGLEGIAG 1442


>gi|16357503 type IV alpha 6 collagen isoform B precursor [Homo
            sapiens]
          Length = 1690

 Score = 31.2 bits (69), Expect = 0.96
 Identities = 17/40 (42%), Positives = 21/40 (52%)

Query: 137  GRCGFSGRHGFFGRRRFSGRPKLSGRLGLLGRRGFSGRLG 176
            GR G  G  GF G +   G+  +SG +GL G  GF G  G
Sbjct: 1096 GRDGLIGNIGFPGNKGEDGKVGVSGDVGLPGAPGFPGVAG 1135



 Score = 30.4 bits (67), Expect = 1.6
 Identities = 21/44 (47%), Positives = 23/44 (52%), Gaps = 3/44 (6%)

Query: 135 AIGRCGFSGRHGFFGRRRFSGRPKLSGRLGLLGRRGFSGRLGGY 178
           A GR G  G  G  G + F+G   LSG   L G RGF G LG Y
Sbjct: 47  ARGRPGPIGIQGPTGPQGFTGSTGLSG---LKGERGFPGLLGPY 87



 Score = 28.1 bits (61), Expect = 8.1
 Identities = 15/40 (37%), Positives = 19/40 (47%)

Query: 137 GRCGFSGRHGFFGRRRFSGRPKLSGRLGLLGRRGFSGRLG 176
           G  G +G  GF G     G   + G+ GLLG +G  G  G
Sbjct: 764 GLQGLTGHKGFLGDSGLPGLKGVHGKPGLLGPKGERGSPG 803


>gi|115392133 collagen, type XXIV, alpha 1 [Homo sapiens]
          Length = 1714

 Score = 31.2 bits (69), Expect = 0.96
 Identities = 17/40 (42%), Positives = 19/40 (47%)

Query: 137 GRCGFSGRHGFFGRRRFSGRPKLSGRLGLLGRRGFSGRLG 176
           G  G  G+ G  G R F G+P L G  G  G RG  G  G
Sbjct: 954 GPHGLIGKTGNPGERGFQGKPGLQGLPGSTGDRGLPGEPG 993



 Score = 30.0 bits (66), Expect = 2.1
 Identities = 16/41 (39%), Positives = 19/41 (46%)

Query: 136 IGRCGFSGRHGFFGRRRFSGRPKLSGRLGLLGRRGFSGRLG 176
           IG+ G  G  GF G+    G P  +G  GL G  G  G  G
Sbjct: 959 IGKTGNPGERGFQGKPGLQGLPGSTGDRGLPGEPGLRGLQG 999



 Score = 28.9 bits (63), Expect = 4.8
 Identities = 16/42 (38%), Positives = 19/42 (45%)

Query: 135 AIGRCGFSGRHGFFGRRRFSGRPKLSGRLGLLGRRGFSGRLG 176
           A G  G  G  G  G     G P + G+ G  GR+GF G  G
Sbjct: 616 AQGFIGSPGEAGQLGPEGERGIPGIRGKKGFKGRQGFPGDFG 657



 Score = 28.5 bits (62), Expect = 6.2
 Identities = 16/41 (39%), Positives = 20/41 (48%), Gaps = 3/41 (7%)

Query: 136 IGRCGFSGRHGFFGRRRFSGRPKLSGRLGLLGRRGFSGRLG 176
           IG  G+ GR G  G     G P   G  G +G  G +G+LG
Sbjct: 593 IGSPGYPGRQGLAGPE---GNPGPKGAQGFIGSPGEAGQLG 630



 Score = 28.5 bits (62), Expect = 6.2
 Identities = 16/40 (40%), Positives = 19/40 (47%)

Query: 137  GRCGFSGRHGFFGRRRFSGRPKLSGRLGLLGRRGFSGRLG 176
            G  G  G  G  G    SG+P + G  GLLG +G  G  G
Sbjct: 1258 GERGSEGNKGKKGAPGPSGKPGIPGLQGLLGPKGIQGYHG 1297



 Score = 28.1 bits (61), Expect = 8.1
 Identities = 15/40 (37%), Positives = 18/40 (45%)

Query: 137 GRCGFSGRHGFFGRRRFSGRPKLSGRLGLLGRRGFSGRLG 176
           G  G  G  G  G +   G P L G  G  G  GF+G +G
Sbjct: 555 GLSGLMGPPGMQGDKGLKGHPGLPGLPGEQGIPGFAGNIG 594



 Score = 28.1 bits (61), Expect = 8.1
 Identities = 18/43 (41%), Positives = 21/43 (48%), Gaps = 3/43 (6%)

Query: 137 GRCGFSGRHGF---FGRRRFSGRPKLSGRLGLLGRRGFSGRLG 176
           G+ GF GR GF   FG R  +G     G +G  G  GF G  G
Sbjct: 642 GKKGFKGRQGFPGDFGDRGPAGLDGSPGLVGGTGPPGFPGLRG 684


>gi|183583553 collagen, type XXIX, alpha 1 [Homo sapiens]
          Length = 2526

 Score = 30.8 bits (68), Expect = 1.3
 Identities = 17/41 (41%), Positives = 23/41 (56%), Gaps = 3/41 (7%)

Query: 136  IGRCGFSGRHGFFGRRRFSGRPKLSGRLGLLGRRGFSGRLG 176
            +G  G +GR G  G++   G P L G LG +G+ G  GR G
Sbjct: 1614 MGAKGSTGRPGLLGKK---GEPGLPGDLGPVGQTGQRGRQG 1651



 Score = 28.5 bits (62), Expect = 6.2
 Identities = 16/37 (43%), Positives = 16/37 (43%)

Query: 140  GFSGRHGFFGRRRFSGRPKLSGRLGLLGRRGFSGRLG 176
            G  GR G  G R  SG P   G  G LG  G  G  G
Sbjct: 1552 GSRGREGQRGLRGVSGEPGNPGPTGTLGAEGLQGPQG 1588


>gi|4502951 collagen type III alpha 1 preproprotein [Homo sapiens]
          Length = 1466

 Score = 30.8 bits (68), Expect = 1.3
 Identities = 19/46 (41%), Positives = 22/46 (47%), Gaps = 6/46 (13%)

Query: 137 GRCGFSGRHGFFGRRRFSGRPKLSGRL------GLLGRRGFSGRLG 176
           G+ G SGR G  G R   G P + G        G+ G RGF GR G
Sbjct: 228 GKDGESGRPGRPGERGLPGPPGIKGPAGIPGFPGMKGHRGFDGRNG 273



 Score = 28.1 bits (61), Expect = 8.1
 Identities = 16/40 (40%), Positives = 19/40 (47%), Gaps = 3/40 (7%)

Query: 140 GFSGRHGFFGR---RRFSGRPKLSGRLGLLGRRGFSGRLG 176
           G  G  GF GR   +  +G P L G  GL G  G  G +G
Sbjct: 261 GMKGHRGFDGRNGEKGETGAPGLKGENGLPGENGAPGPMG 300


>gi|15890086 type IV collagen alpha 5 isoform 2 precursor [Homo
            sapiens]
          Length = 1691

 Score = 30.8 bits (68), Expect = 1.3
 Identities = 16/40 (40%), Positives = 21/40 (52%)

Query: 137  GRCGFSGRHGFFGRRRFSGRPKLSGRLGLLGRRGFSGRLG 176
            G+ G SG+ G  G     G P L G+ GL+G  G  G +G
Sbjct: 991  GQPGLSGQPGLPGPPGPKGNPGLPGQPGLIGPPGLKGTIG 1030



 Score = 28.5 bits (62), Expect = 6.2
 Identities = 18/40 (45%), Positives = 19/40 (47%)

Query: 137 GRCGFSGRHGFFGRRRFSGRPKLSGRLGLLGRRGFSGRLG 176
           G  GF G  G  G R F G P   GR GL G  G  G +G
Sbjct: 763 GLPGFKGALGPKGDRGFPGPPGPPGRTGLDGLPGPKGDVG 802


>gi|4502955 type IV collagen alpha 5 isoform 1 precursor [Homo
            sapiens]
          Length = 1685

 Score = 30.8 bits (68), Expect = 1.3
 Identities = 16/40 (40%), Positives = 21/40 (52%)

Query: 137  GRCGFSGRHGFFGRRRFSGRPKLSGRLGLLGRRGFSGRLG 176
            G+ G SG+ G  G     G P L G+ GL+G  G  G +G
Sbjct: 991  GQPGLSGQPGLPGPPGPKGNPGLPGQPGLIGPPGLKGTIG 1030



 Score = 28.5 bits (62), Expect = 6.2
 Identities = 18/40 (45%), Positives = 19/40 (47%)

Query: 137 GRCGFSGRHGFFGRRRFSGRPKLSGRLGLLGRRGFSGRLG 176
           G  GF G  G  G R F G P   GR GL G  G  G +G
Sbjct: 763 GLPGFKGALGPKGDRGFPGPPGPPGRTGLDGLPGPKGDVG 802


>gi|15890088 type IV collagen alpha 5 isoform 3 precursor [Homo
            sapiens]
          Length = 1688

 Score = 30.8 bits (68), Expect = 1.3
 Identities = 16/40 (40%), Positives = 21/40 (52%)

Query: 137  GRCGFSGRHGFFGRRRFSGRPKLSGRLGLLGRRGFSGRLG 176
            G+ G SG+ G  G     G P L G+ GL+G  G  G +G
Sbjct: 991  GQPGLSGQPGLPGPPGPKGNPGLPGQPGLIGPPGLKGTIG 1030



 Score = 28.5 bits (62), Expect = 6.2
 Identities = 18/40 (45%), Positives = 19/40 (47%)

Query: 137 GRCGFSGRHGFFGRRRFSGRPKLSGRLGLLGRRGFSGRLG 176
           G  GF G  G  G R F G P   GR GL G  G  G +G
Sbjct: 763 GLPGFKGALGPKGDRGFPGPPGPPGRTGLDGLPGPKGDVG 802


>gi|122937416 hypothetical protein LOC85452 [Homo sapiens]
          Length = 762

 Score = 30.4 bits (67), Expect = 1.6
 Identities = 29/94 (30%), Positives = 45/94 (47%), Gaps = 4/94 (4%)

Query: 41  EDINLMEDMALLEDVDLLEDT-DFLEDLDFSEAMDLREDKDFLEDMDSLEDMALLEDVDL 99
           +D +L+ +  LL D  LLED  D LED +F     L+E +D ++   S     L  D D 
Sbjct: 3   DDGSLLPEDELLADALLLEDERDELEDPEFDIKCLLQEAEDDVDPGHSSSVKELDTDADK 62

Query: 100 LEDTDFLEDPDFLEAIDLREDKDFLEDMDSLEDL 133
           L+        D  +A  LR++   L+ M   ++L
Sbjct: 63  LKKK---TAEDRTQAFHLRQNLSALDKMHEEQEL 93


>gi|111118976 collagen, type II, alpha 1 isoform 1 precursor [Homo
           sapiens]
          Length = 1487

 Score = 30.0 bits (66), Expect = 2.1
 Identities = 17/41 (41%), Positives = 20/41 (48%)

Query: 136 IGRCGFSGRHGFFGRRRFSGRPKLSGRLGLLGRRGFSGRLG 176
           +G  G  G  G  G R F G+  L+G  G  G RG SG  G
Sbjct: 500 VGPIGPPGERGAPGNRGFPGQDGLAGPKGAPGERGPSGLAG 540



 Score = 28.1 bits (61), Expect = 8.1
 Identities = 16/40 (40%), Positives = 19/40 (47%)

Query: 137 GRCGFSGRHGFFGRRRFSGRPKLSGRLGLLGRRGFSGRLG 176
           G  G  G  G  G +  +G P   G  GL G RG +GR G
Sbjct: 528 GAPGERGPSGLAGPKGANGDPGRPGEPGLPGARGLTGRPG 567



 Score = 28.1 bits (61), Expect = 8.1
 Identities = 16/40 (40%), Positives = 18/40 (45%)

Query: 137  GRCGFSGRHGFFGRRRFSGRPKLSGRLGLLGRRGFSGRLG 176
            G  G  G  G  G R F+G   L G  G  G +G SG  G
Sbjct: 1119 GEAGEPGERGLKGHRGFTGLQGLPGPPGPSGDQGASGPAG 1158


  Database: hs.faa
    Posted date:  Aug 4, 2009  4:42 PM
  Number of letters in database: 18,247,518
  Number of sequences in database:  37,866
  
Lambda     K      H
   0.325    0.146    0.493 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 11,394,576
Number of Sequences: 37866
Number of extensions: 566490
Number of successful extensions: 3172
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 58
Number of HSP's successfully gapped in prelim test: 23
Number of HSP's that attempted gapping in prelim test: 1855
Number of HSP's gapped (non-prelim): 1197
length of query: 262
length of database: 18,247,518
effective HSP length: 100
effective length of query: 162
effective length of database: 14,460,918
effective search space: 2342668716
effective search space used: 2342668716
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 61 (28.1 bits)

Search results were obtained with NCBI BLAST and RefSeq entries.


Home | Table of Contents | Search text | Search genes | Search sequences | Purchase | FAQ | Blog | Help

Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

CSHL Press