Guide to the Human Genome
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Name: PELP1 Sequence: fasta or formatted (1130aa) NCBI GI: 155030232
Description:

proline, glutamic acid and leucine rich protein 1

Referenced in:

Leucine-rich Repeat Family

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             8.3         94           3
 C cysteine            1.9         22           1
 D aspartate           3.6         41           2
 E glutamate          13.1        148          21
 F phenylalanine       2.0         23           2
 G glycine             8.1         92           4
 H histidine           1.8         20           1
 I isoleucine          2.0         23           1
 K lysine              1.8         20           2
 L leucine            13.4        151           4
 M methionine          1.7         19           1
 N asparagine          1.2         14           1
 P proline            14.3        162           9
 Q glutamine           3.2         36           2
 R arginine            4.2         47           2
 S serine              8.8         99           2
 T threonine           4.1         46           2
 V valine              5.2         59           2
 W tryptophan          0.4          4           1
 Y tyrosine            0.9         10           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   proline, glutamic acid and leucine rich protein 1 [... 
TTN                   0.038   titin isoform N2-A 
FMN2                  0.036   formin 2 
MLL2                  0.032   myeloid/lymphoid or mixed-lineage leukemia 2 
FLJ22184              0.031   PREDICTED: hypothetical protein FLJ22184 
RPGR                  0.030   retinitis pigmentosa GTPase regulator isoform C [Hom...
SCAF1                 0.029   SR-related CTD-associated factor 1 
WAS                   0.029   Wiskott-Aldrich syndrome protein 
MYT1                  0.028   myelin transcription factor 1 
RAPH1                 0.028   Ras association and pleckstrin homology domains 1 is...
MYST4                 0.028   MYST histone acetyltransferase (monocytic leukemia)...
RP1L1                 0.028   retinitis pigmentosa 1-like 1 
KIAA1429              0.028   hypothetical protein LOC25962 isoform 1 
KIAA1429              0.028   hypothetical protein LOC25962 isoform 2 
WIPF3                 0.028   WAS/WASL interacting protein family, member 3 [Homo...
SFRS15                0.027   splicing factor, arginine/serine-rich 15 isoform 2 ...
SFRS15                0.027   splicing factor, arginine/serine-rich 15 isoform 1 [...
NACA                  0.027   nascent polypeptide-associated complex alpha subuni...
FLJ22184              0.027   PREDICTED: hypothetical protein LOC80164 
RERE                  0.027   atrophin-1 like protein isoform b 
RERE                  0.027   atrophin-1 like protein isoform a 
RERE                  0.027   atrophin-1 like protein isoform a 
FLJ22184              0.027   PREDICTED: hypothetical protein FLJ22184 
WIPF1                 0.027   WAS/WASL interacting protein family, member 1 [Homo...
WIPF1                 0.027   WAS/WASL interacting protein family, member 1 
PRB1                  0.027   proline-rich protein BstNI subfamily 1 isoform 1 pre...
NEFM                  0.027   neurofilament, medium polypeptide 150kDa isoform 1 ...
NEFM                  0.027   neurofilament, medium polypeptide 150kDa isoform 2 ...
MLL4                  0.027   myeloid/lymphoid or mixed-lineage leukemia 4 
FMNL1                 0.027   formin-like 1 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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