PCF11 26236

Name: PCF11	Sequence: fasta or formatted (1555aa)		NCBI GI: 33620745
Description: pre-mRNA cleavage complex II protein Pcf11		Referenced in: Polyadenylation
Composition: Amino acid Percentage Count Longest homopolymer A alanine 4.2 66 2 C cysteine 0.8 12 1 D aspartate 5.0 77 3 E glutamate 7.8 122 5 F phenylalanine 4.3 67 2 G glycine 8.9 138 4 H histidine 2.6 41 1 I isoleucine 3.5 54 2 K lysine 6.8 106 2 L leucine 7.3 114 2 M methionine 1.2 19 1 N asparagine 4.1 64 1 P proline 9.1 142 3 Q glutamine 7.7 120 3 R arginine 6.6 103 2 S serine 8.7 135 2 T threonine 4.7 73 2 V valine 4.6 71 3 W tryptophan 0.7 11 1 Y tyrosine 1.3 20 2			Comparative genomics: Search single species RefSeq proteins at NCBI H. sapiens M. musculus D. rerio C. intestinalis S. purpuratus D. melanogaster C. elegans A. thaliana S. cerevisiae E. coli W3110 A. pernix K1 Search summary Figure data Additional searches of RefSeq proteins at NCBI All Eukaryotes Bacteria Archaea Viruses Primates Mammals Vertebrates
Related human proteins: Protein Relative score Description Self-match 1.000 pre-mRNA cleavage complex II protein Pcf11 COL4A5 0.025 type IV collagen alpha 5 isoform 1 precursor COL4A5 0.025 type IV collagen alpha 5 isoform 3 precursor COL4A5 0.025 type IV collagen alpha 5 isoform 2 precursor COL28A1 0.024 collagen, type XXVIII precursor COL5A1 0.024 alpha 1 type V collagen preproprotein COL2A1 0.024 collagen, type II, alpha 1 isoform 1 precursor [Hom... COL2A1 0.024 collagen, type II, alpha 1 isoform 2 precursor [Hom... COL11A2 0.024 collagen, type XI, alpha 2 isoform 2 preproprotein ... COL11A2 0.024 collagen, type XI, alpha 2 isoform 3 preproprotein ... COL11A2 0.024 collagen, type XI, alpha 2 isoform 1 preproprotein ... COL4A1 0.024 alpha 1 type IV collagen preproprotein COL8A1 0.024 alpha 1 type VIII collagen precursor COL8A1 0.024 alpha 1 type VIII collagen precursor COL5A3 0.024 collagen, type V, alpha 3 preproprotein COL1A1 0.023 alpha 1 type I collagen preproprotein COL11A1 0.023 alpha 1 type XI collagen isoform B preproprotein [Ho... COL11A1 0.023 alpha 1 type XI collagen isoform C preproprotein [Ho... COL11A1 0.023 alpha 1 type XI collagen isoform A preproprotein [Ho... COL22A1 0.023 collagen, type XXII, alpha 1 COL5A2 0.023 alpha 2 type V collagen preproprotein COL9A3 0.023 alpha 3 type IX collagen SFRS12 0.023 splicing factor, arginine/serine-rich 12 isoform a ... SFRS12 0.023 splicing factor, arginine/serine-rich 12 isoform b [... COL27A1 0.023 collagen, type XXVII, alpha 1 COL3A1 0.023 collagen type III alpha 1 preproprotein LOC100293055 0.022 PREDICTED: similar to COL22A1 protein COL4A4 0.022 alpha 4 type IV collagen precursor COL7A1 0.022 alpha 1 type VII collagen precursor COL4A3 0.022 alpha 3 type IV collagen isoform 5 precursor Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.