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Search of human proteins with 122937424
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|122937424 one cut homeobox 3 [Homo sapiens]
(494 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|122937424 one cut homeobox 3 [Homo sapiens] 1009 0.0
gi|24307887 one cut homeobox 1 [Homo sapiens] 434 e-121
gi|119220564 one cut domain, family member 2 [Homo sapiens] 426 e-119
gi|5453936 POU class 3 homeobox 3 [Homo sapiens] 87 3e-17
gi|4826998 splicing factor proline/glutamine rich (polypyrimidin... 83 5e-16
gi|110832843 TBP-associated factor 4 [Homo sapiens] 82 1e-15
gi|116517292 cut-like 2 [Homo sapiens] 82 1e-15
gi|148277064 cut-like homeobox 1 isoform a [Homo sapiens] 79 9e-15
gi|239757043 PREDICTED: functional smad suppressing element 18 [... 74 2e-13
gi|239751555 PREDICTED: functional smad suppressing element 18 [... 74 2e-13
gi|239746067 PREDICTED: functional smad suppressing element 18 [... 74 2e-13
gi|40068464 AT rich interactive domain 1B (SWI1-like) isoform 2 ... 70 4e-12
gi|40068466 AT rich interactive domain 1B (SWI1-like) isoform 1 ... 70 4e-12
gi|40068462 AT rich interactive domain 1B (SWI1-like) isoform 3 ... 70 4e-12
gi|110349772 alpha 1 type I collagen preproprotein [Homo sapiens] 67 5e-11
gi|153792074 proline rich 12 [Homo sapiens] 66 8e-11
gi|126090909 engrailed homeobox 1 [Homo sapiens] 65 1e-10
gi|22538470 eomesodermin [Homo sapiens] 65 1e-10
gi|111118976 collagen, type II, alpha 1 isoform 1 precursor [Hom... 65 1e-10
gi|21264565 AT rich interactive domain 1A isoform a [Homo sapiens] 65 1e-10
gi|21264575 AT rich interactive domain 1A isoform b [Homo sapiens] 65 1e-10
gi|73476377 LBXCOR1 homolog [Homo sapiens] 64 2e-10
gi|98985810 alpha 1 type XI collagen isoform B preproprotein [Ho... 64 4e-10
gi|98985808 alpha 1 type XI collagen isoform C preproprotein [Ho... 64 4e-10
gi|98985806 alpha 1 type XI collagen isoform A preproprotein [Ho... 64 4e-10
gi|111118974 collagen, type II, alpha 1 isoform 2 precursor [Hom... 64 4e-10
gi|4502951 collagen type III alpha 1 preproprotein [Homo sapiens] 64 4e-10
gi|25777671 protein phosphatase 1, regulatory subunit 10 [Homo s... 63 7e-10
gi|239757130 PREDICTED: hypothetical protein FLJ22184 [Homo sapi... 62 9e-10
gi|239751637 PREDICTED: hypothetical protein FLJ22184 [Homo sapi... 62 9e-10
>gi|122937424 one cut homeobox 3 [Homo sapiens]
Length = 494
Score = 1009 bits (2610), Expect = 0.0
Identities = 494/494 (100%), Positives = 494/494 (100%)
Query: 1 MELSLESLGGLHSVAHAQAGELLSPGHARSAAAQHRGLVAPGRPGLVAGMASLLDGGGGG 60
MELSLESLGGLHSVAHAQAGELLSPGHARSAAAQHRGLVAPGRPGLVAGMASLLDGGGGG
Sbjct: 1 MELSLESLGGLHSVAHAQAGELLSPGHARSAAAQHRGLVAPGRPGLVAGMASLLDGGGGG 60
Query: 61 GGGGAGGAGGAGSAGGGADFRGELAGPLHPAMGMACEAPGLGGTYTTLTPLQHLPPLAAV 120
GGGGAGGAGGAGSAGGGADFRGELAGPLHPAMGMACEAPGLGGTYTTLTPLQHLPPLAAV
Sbjct: 61 GGGGAGGAGGAGSAGGGADFRGELAGPLHPAMGMACEAPGLGGTYTTLTPLQHLPPLAAV 120
Query: 121 ADKFHQHAAAAAVAGAHGGHPHAHPHPAAAPPPPPPPQRLAASVSGSFTLMRDERAALAS 180
ADKFHQHAAAAAVAGAHGGHPHAHPHPAAAPPPPPPPQRLAASVSGSFTLMRDERAALAS
Sbjct: 121 ADKFHQHAAAAAVAGAHGGHPHAHPHPAAAPPPPPPPQRLAASVSGSFTLMRDERAALAS 180
Query: 181 VGHLYGPYGKELPAMGSPLSPLPNALPPALHGAPQPPPPPPPPPLAAYGPPGHLAGDKLL 240
VGHLYGPYGKELPAMGSPLSPLPNALPPALHGAPQPPPPPPPPPLAAYGPPGHLAGDKLL
Sbjct: 181 VGHLYGPYGKELPAMGSPLSPLPNALPPALHGAPQPPPPPPPPPLAAYGPPGHLAGDKLL 240
Query: 241 PPAAFEPHAALLGRAEDALARGLPGGGGGTGSGGAGSGSAAGLLAPLGGLAAAGAHGPHG 300
PPAAFEPHAALLGRAEDALARGLPGGGGGTGSGGAGSGSAAGLLAPLGGLAAAGAHGPHG
Sbjct: 241 PPAAFEPHAALLGRAEDALARGLPGGGGGTGSGGAGSGSAAGLLAPLGGLAAAGAHGPHG 300
Query: 301 GGGGPGGSGGGPSAGAAAEEINTKEVAQRITAELKRYSIPQAIFAQRILCRSQGTLSDLL 360
GGGGPGGSGGGPSAGAAAEEINTKEVAQRITAELKRYSIPQAIFAQRILCRSQGTLSDLL
Sbjct: 301 GGGGPGGSGGGPSAGAAAEEINTKEVAQRITAELKRYSIPQAIFAQRILCRSQGTLSDLL 360
Query: 361 RNPKPWSKLKSGRETFRRMWKWLQEPEFQRMSALRLAACKRKEQEQQKERALQPKKQRLV 420
RNPKPWSKLKSGRETFRRMWKWLQEPEFQRMSALRLAACKRKEQEQQKERALQPKKQRLV
Sbjct: 361 RNPKPWSKLKSGRETFRRMWKWLQEPEFQRMSALRLAACKRKEQEQQKERALQPKKQRLV 420
Query: 421 FTDLQRRTLIAIFKENKRPSKEMQVTISQQLGLELNTVSNFFMNARRRCMNRWAEEPSTA 480
FTDLQRRTLIAIFKENKRPSKEMQVTISQQLGLELNTVSNFFMNARRRCMNRWAEEPSTA
Sbjct: 421 FTDLQRRTLIAIFKENKRPSKEMQVTISQQLGLELNTVSNFFMNARRRCMNRWAEEPSTA 480
Query: 481 PGGPAGATATFSKA 494
PGGPAGATATFSKA
Sbjct: 481 PGGPAGATATFSKA 494
>gi|24307887 one cut homeobox 1 [Homo sapiens]
Length = 465
Score = 434 bits (1115), Expect = e-121
Identities = 273/504 (54%), Positives = 314/504 (62%), Gaps = 53/504 (10%)
Query: 2 ELSLESLGGLHSVAH----AQAGELLSPGHARSAAAQHRGLVAPGRPGLVAGMASLLDGG 57
+L++E++G LH V+H A A L HARS+ A HRG P GMASLLDGG
Sbjct: 4 QLTMEAIGELHGVSHEPVPAPADLLGGSPHARSSVA-HRGSHLPPAHPRSMGMASLLDGG 62
Query: 58 GGGGGGGAGGAGGAGSAGGGADFRGELAGPLHPAMGMACEAP---GLGGTYTTLTPLQHL 114
GGG S LAGPLHP M MACE P + TYTTLTPLQ L
Sbjct: 63 SGGGDYHHHHRAPEHS----------LAGPLHPTMTMACETPPGMSMPTTYTTLTPLQPL 112
Query: 115 PPLAAVADKFHQHAAAAAVAGAHGGHPHAHPHPAAAPPPPPPPQRLAASVSGSFTLMRDE 174
PP++ V+DKF H H H H HPH QRLA +VSGSFTLMRDE
Sbjct: 113 PPISTVSDKFPHH--------HHHHHHHHHPH---------HHQRLAGNVSGSFTLMRDE 155
Query: 175 RAALASVGHLYGPYGKELPAMGSPLSPLPNALPPALHGAPQPPPPPPPPPLAAYGPPG-H 233
R LAS+ +LY PY K++ MG LSPL ++ ++H + Q P Y PG
Sbjct: 156 R-GLASMNNLYTPYHKDVAGMGQSLSPLSSSGLGSIHNSQQGLP--------HYAHPGAA 206
Query: 234 LAGDKLLPPAAFEP-HAALLGR-AEDALARGLPGGGGGTGSGGAGSGSA-AGLLAPLGGL 290
+ DK+L P FE H A+LGR E L P G G A L A G
Sbjct: 207 MPTDKMLTPNGFEAHHPAMLGRHGEQHLT---PTSAGMVPINGLPPHHPHAHLNAQGHGQ 263
Query: 291 AAAGAHGPHGGGGGPGGSGGGPSAGAAAEEINTKEVAQRITAELKRYSIPQAIFAQRILC 350
A P+ G S G S EEINTKEVAQRIT ELKRYSIPQAIFAQR+LC
Sbjct: 264 LLGTAREPNPSVTGAQVSNG--SNSGQMEEINTKEVAQRITTELKRYSIPQAIFAQRVLC 321
Query: 351 RSQGTLSDLLRNPKPWSKLKSGRETFRRMWKWLQEPEFQRMSALRLAACKRKEQEQQKER 410
RSQGTLSDLLRNPKPWSKLKSGRETFRRMWKWLQEPEFQRMSALRLAACKRKEQE K+R
Sbjct: 322 RSQGTLSDLLRNPKPWSKLKSGRETFRRMWKWLQEPEFQRMSALRLAACKRKEQEHGKDR 381
Query: 411 ALQPKKQRLVFTDLQRRTLIAIFKENKRPSKEMQVTISQQLGLELNTVSNFFMNARRRCM 470
PKK RLVFTD+QRRTL AIFKENKRPSKE+Q+TISQQLGLEL+TVSNFFMNARRR +
Sbjct: 382 GNTPKKPRLVFTDVQRRTLHAIFKENKRPSKELQITISQQLGLELSTVSNFFMNARRRSL 441
Query: 471 NRWAEEPSTAPGGPAGATATFSKA 494
++W +E S+ G + +++T +KA
Sbjct: 442 DKWQDEGSSNSGNSSSSSSTCTKA 465
>gi|119220564 one cut domain, family member 2 [Homo sapiens]
Length = 504
Score = 426 bits (1096), Expect = e-119
Identities = 281/548 (51%), Positives = 319/548 (58%), Gaps = 121/548 (22%)
Query: 2 ELSLESLGGLHSVAHAQAG------------------ELL---SPGHA-RSAAAQHRG-- 37
EL++ESLG LH A +G ELL SP HA R AA RG
Sbjct: 23 ELTMESLGTLHGPAGGGSGGGGGGGGGGGGGGPGHEQELLASPSPHHAGRGAAGSLRGPP 82
Query: 38 ---------------LVAPGRPGLVAGMASLLDGGGGGGGGGAGGAGGAGSAGGGADFRG 82
A R +V MAS+LDGG D+R
Sbjct: 83 PPPTAHQELGTAAAAAAAASRSAMVTSMASILDGG---------------------DYRP 121
Query: 83 ELAGPLHPAMGMACEA--PGLG--GTYTTLTPLQHLPPLAAVADKFHQHAAAAAVAGAHG 138
EL+ PLH AM M+C++ PG+G TYTTLTPLQ LPP++ V+DKFH
Sbjct: 122 ELSIPLHHAMSMSCDSSPPGMGMSNTYTTLTPLQPLPPISTVSDKFHHP----------- 170
Query: 139 GHPHAHPHPAAAPPPPPPPQRLAASVSGSFTLMRDERAALASVGHLYGPYGKELPAMGSP 198
HPH HPH QRL+ +VSGSFTLMRDER L ++ +LY PY KE+P M
Sbjct: 171 -HPHHHPHHHHHHHH----QRLSGNVSGSFTLMRDERG-LPAMNNLYSPY-KEMPGMSQS 223
Query: 199 LSPLPNALP-----PALHGAPQPPPPPPPPPLAAYGPPGHLAGDKLLPPAAFEPHAALLG 253
LSPL A P LH A Q P YGPPGH DK+L P H A+L
Sbjct: 224 LSPLA-ATPLGNGLGGLHNAQQSLPN--------YGPPGH---DKMLSPNFDAHHTAMLT 271
Query: 254 RAEDALARGLPGGGGGTGSGGAGSGSAAGLLAPLGGLAAAGAHGPHGGGGGPG------- 306
R E L+RGL GT A +++ L GL G HG P
Sbjct: 272 RGEQHLSRGL-----GT--------PPAAMMSHLNGLHHPGHTQSHGPVLAPSRERPPSS 318
Query: 307 GSGGGPSAGAAAEEINTKEVAQRITAELKRYSIPQAIFAQRILCRSQGTLSDLLRNPKPW 366
SG + EEINTKEVAQRITAELKRYSIPQAIFAQR+LCRSQGTLSDLLRNPKPW
Sbjct: 319 SSGSQVATSGQLEEINTKEVAQRITAELKRYSIPQAIFAQRVLCRSQGTLSDLLRNPKPW 378
Query: 367 SKLKSGRETFRRMWKWLQEPEFQRMSALRLAACKRKEQEQQKERALQPKKQRLVFTDLQR 426
SKLKSGRETFRRMWKWLQEPEFQRMSALRLAACKRKEQE K+R KK RLVFTDLQR
Sbjct: 379 SKLKSGRETFRRMWKWLQEPEFQRMSALRLAACKRKEQEPNKDRNNSQKKSRLVFTDLQR 438
Query: 427 RTLIAIFKENKRPSKEMQVTISQQLGLELNTVSNFFMNARRRCMNRWAEEPSTAPGGPAG 486
RTL AIFKENKRPSKEMQ+TISQQLGLEL TVSNFFMNARRR + +W ++ ST GG +
Sbjct: 439 RTLFAIFKENKRPSKEMQITISQQLGLELTTVSNFFMNARRRSLEKWQDDLST--GGSSS 496
Query: 487 ATATFSKA 494
++T +KA
Sbjct: 497 TSSTCTKA 504
Score = 35.4 bits (80), Expect = 0.12
Identities = 32/95 (33%), Positives = 36/95 (37%), Gaps = 13/95 (13%)
Query: 234 LAGDKLLPPAAFEPHAALLGRAEDALARGLPGGGGGTGSGGAGSGSAAGLLAPLGGLAAA 293
L G + P E L G A G GGGGG GG G G LLA
Sbjct: 15 LEGCAMNPELTMESLGTLHGPAGGGSGGGGGGGGGG---GGGGPGHEQELLA-------- 63
Query: 294 GAHGPHGGGGGPGGS-GGGPSAGAAAEEINTKEVA 327
+ PH G G GS G P A +E+ T A
Sbjct: 64 -SPSPHHAGRGAAGSLRGPPPPPTAHQELGTAAAA 97
>gi|5453936 POU class 3 homeobox 3 [Homo sapiens]
Length = 500
Score = 87.4 bits (215), Expect = 3e-17
Identities = 123/496 (24%), Positives = 180/496 (36%), Gaps = 92/496 (18%)
Query: 41 PGRPGLVAGMASLLDGGGGGGGGGAGGAGGAGSAGGGAD-------------FRGELAGP 87
PG L AG D G GGGGG GG GG G AGGG +RG+ +
Sbjct: 11 PGNSLLAAGSIVHSDAAGAGGGGGGGGGGGGGGAGGGGGGMQPGSAAVTSGAYRGDPSSV 70
Query: 88 -------LHPAMGMACEAPGLGGTYTTLTPLQHLPPLAAVADKFHQHAAAAAVAGAHGGH 140
+ AM + L + +T L H AA A AAA + G
Sbjct: 71 KMVQSDFMQGAMAASNGGHMLSHAHQWVTALPHAAAAAAAA-----AAAAVEASSPWSGS 125
Query: 141 PHAHPHPAAAPPPPPPPQRLAASVSGSFTLMRDERAALASVGHLYGPYGKELPAMGSPLS 200
PP PPPP V G RD+ A ++ H GP P +G P
Sbjct: 126 AVGMAGSPQQPPQPPPPPPQGPDVKGG--AGRDDLHAGTALHH-RGP-----PHLGPP-P 176
Query: 201 PLPNALPPALHGAPQPPPPPPPPPLAAYGPPGHLAGDKLLPPAAFEPHAALLGRAEDALA 260
P P+ P GA AA P G + PP P + L +
Sbjct: 177 PPPHQGHPGGWGAAAAAAAAAAAAAAAAHLPSMAGGQQ--PP----PQSLLYSQPGGFTV 230
Query: 261 RGL------PGGGGGTGSGGAGSGSAAGLLAPLGGLAAAGAH------------------ 296
G+ PGGGGG GGA S GL+ G H
Sbjct: 231 NGMLSAPPGPGGGGGGAGGGAQSLVHPGLVR--GDTPELAEHHHHHHHHAHPHPPHPHHA 288
Query: 297 -GP--HGGGGGPGGSGGGPSAGAAAEEINTKEVAQRITAELKRYSIPQAIFAQRILCRSQ 353
GP HGGGGG G G + E+ T + ++ + K+ I F Q + +
Sbjct: 289 QGPPHHGGGGGGAGPGLNSHDPHSDEDTPTSDDLEQFAKQFKQRRIKLG-FTQADVGLAL 347
Query: 354 GTLSDLLRNPKPWSKLKSGRETFRRMW-------KWLQEPEFQRMSALRLAACKRKEQEQ 406
GTL + + + ++ + +F+ M KWL+E + S + + +++
Sbjct: 348 GTLYGNVFSQTTICRFEALQLSFKNMCKLKPLLNKWLEEADSSTGSPTSIDKIAAQGRKR 407
Query: 407 QKERALQPKKQRLVFTDLQRRTLIAIFKENKRPSKEMQVTISQQLGLELNTVSNFFMNAR 466
+K +++ + L + F + +PS + ++ L LE V +F N R
Sbjct: 408 KKRTSIEVS---------VKGALESHFLKCPKPSAQEITNLADSLQLEKEVVRVWFCNRR 458
Query: 467 RRCMNRWAEEPSTAPG 482
++ E+ T PG
Sbjct: 459 QK------EKRMTPPG 468
>gi|4826998 splicing factor proline/glutamine rich (polypyrimidine
tract binding protein associated) [Homo sapiens]
Length = 707
Score = 83.2 bits (204), Expect = 5e-16
Identities = 81/256 (31%), Positives = 92/256 (35%), Gaps = 29/256 (11%)
Query: 59 GGGGGGAGGAGGAGSAGGGADFRGELAG-PLHPAMGMACEAPGLGGTYTTLTPLQHLPPL 117
GGGGGG GG G GG DFR G L+ G PG G + P PP
Sbjct: 10 GGGGGGFHRRGGGGGRGGLHDFRSPPPGMGLNQNRGPMGPGPGQSGPKPPIPP----PPP 65
Query: 118 AAVADKFHQHAAAAAVAGAHGGHPHAHPHPAAAPPPPP--PPQRLAASVSGSFTLMRDER 175
+ H PH PH PPPPP + + A G +
Sbjct: 66 HQQQQQPPPQQPPPQQPPPHQPPPHPQPHQQQQPPPPPQDSSKPVVAQGPGPAPGVGSAP 125
Query: 176 AALASVGHLYGPYGKELPAMGSPLSPLPNALPPALHGAPQPPPPPPPPPLAAYGPPGHLA 235
A +S P P G +P P PPA+ AP PPP PP P
Sbjct: 126 PASSSAPPATPPTSGAPPGSGPGPTPTP---PPAVTSAPPGAPPPTPPSSGVPTTPPQAG 182
Query: 236 GDKLLPPAAFEPHAALLGRAEDALARGLPGGGGGTGSGGAGSGSAAGLLAPLG--GLAAA 293
G PP P AA+ G PG G G GG G G P G GL+
Sbjct: 183 G----PP---PPPAAVPGPG--------PGPKQGPGPGGPKGGKMPGGPKPGGGPGLSTP 227
Query: 294 GAH--GPHGGGGGPGG 307
G H PH GGG P G
Sbjct: 228 GGHPKPPHRGGGEPRG 243
Score = 31.2 bits (69), Expect = 2.3
Identities = 20/53 (37%), Positives = 23/53 (43%), Gaps = 2/53 (3%)
Query: 260 ARGLPGGGGGTGSGGAGSGSAAGLLAPLGGLAAAGAHGPHGGGGGPGGSGGGP 312
+RG GGG GG G G +P G+ GP G G PG SG P
Sbjct: 8 SRGGGGGGFHRRGGGGGRGGLHDFRSPPPGMGLNQNRGPMGPG--PGQSGPKP 58
>gi|110832843 TBP-associated factor 4 [Homo sapiens]
Length = 1085
Score = 82.0 bits (201), Expect = 1e-15
Identities = 94/308 (30%), Positives = 111/308 (36%), Gaps = 52/308 (16%)
Query: 30 SAAAQHRGLVAPGRPGLVAGMASLLDGGG-GGGGGGAGGAGGAGSAGG--GADFRGELAG 86
+A+A H +AP P + A A L G GA GAG A A G GA AG
Sbjct: 34 AASAAHHHHLAPRTPEVRAAAAGALGNHVVSGSPAGAAGAGPAAPAEGAPGAAPEPPPAG 93
Query: 87 PLHPAMGMACEAPGLGGTYTTLTPLQHLPPLAAVADKFHQHAAA-----AAVAGAHGGHP 141
P G + PG L P PP A + A + AA A A G P
Sbjct: 94 RARPGGG-GPQRPGPPSPRRPLVPAGPAPPAAKLRPPPEGSAGSCAPVPAAAAVAAGPEP 152
Query: 142 ----------------HAHPHPAAAPPPPPPP-------QRLAASVSGSFTLMRDERAAL 178
A P P P P P P A +++GS L+ AA
Sbjct: 153 APAGPAKPAGPAALAARAGPGPGPGPGPGPGPGPGKPAGPGAAQTLNGSAALLNSHHAAA 212
Query: 179 ASVGHLYGPYGKELP-----AMGSPLS--PLPNALPPALHGAPQPP------------PP 219
+V + LP A G+ + P A P AP PP PP
Sbjct: 213 PAVSLVNNGPAALLPLPKPAAPGTVIQTPPFVGAAAPPAPAAPSPPAAPAPAAPAAAPPP 272
Query: 220 PPPPPLAAYGPPGHLAGDKLLPPAAFEPHAALLGRAEDALARGLPGGGGGTG-SGGAGSG 278
PPP P PPGH AG PA P AA G + A P GG G SG G G
Sbjct: 273 PPPAPATLARPPGHPAGPPTAAPAVPPPAAAQNGGSAGAAPAPAPAAGGPAGVSGQPGPG 332
Query: 279 SAAGLLAP 286
+AA AP
Sbjct: 333 AAAAAPAP 340
Score = 45.4 bits (106), Expect = 1e-04
Identities = 58/188 (30%), Positives = 70/188 (37%), Gaps = 34/188 (18%)
Query: 143 AHPHPAAAPPPPPPPQRLAASVSGSFTLMRDERAALASVGHLYGPYGKELPAMGSP-LSP 201
AH H A P P + AA G+ + A + G PA G+P +P
Sbjct: 38 AHHHHLA--PRTPEVRAAAAGALGNHVVSGSPAGAAGA--------GPAAPAEGAPGAAP 87
Query: 202 LPNALPPALHGAP------QPPPPPPPPPLAAYGPPGHLAGDKLLPPAAFEPHAALLGRA 255
P PPA P +P PP P PL GP A KL PP + A
Sbjct: 88 EP---PPAGRARPGGGGPQRPGPPSPRRPLVPAGPAPPAA--KLRPPPEGSAGSCAPVPA 142
Query: 256 EDALARGLPGGGGGTGSGGAGSGSAAGLLAPLGGLAAAGAHGPHGGGG-GPGGSGGGPSA 314
A+A G AG AG A LAA GP G G GPG G P+
Sbjct: 143 AAAVA-------AGPEPAPAGPAKPAGPAA----LAARAGPGPGPGPGPGPGPGPGKPAG 191
Query: 315 GAAAEEIN 322
AA+ +N
Sbjct: 192 PGAAQTLN 199
Score = 42.0 bits (97), Expect = 0.001
Identities = 70/266 (26%), Positives = 79/266 (29%), Gaps = 54/266 (20%)
Query: 25 PGHARSAAAQHRGLVAPGRPGLVAGMASLLDGGGGGGGGGAGGAGGAGSAGGGA--DFRG 82
P A AA P +P A +A+ G G G G G G AG GA G
Sbjct: 141 PAAAAVAAGPEPAPAGPAKPAGPAALAARAGPGPGPGPGPGPGPGPGKPAGPGAAQTLNG 200
Query: 83 ELA-----------------GP--LHP-----AMGMACEAPGLGGTYTTLTPLQHLPPLA 118
A GP L P A G + P G P PP A
Sbjct: 201 SAALLNSHHAAAPAVSLVNNGPAALLPLPKPAAPGTVIQTPPFVGAAAPPAPAAPSPPAA 260
Query: 119 ----AVADKFHQHAAAAAVAGAHGGHPHAHPHPAAAPPPP------------PPPQRLAA 162
A A A A GHP P A A PPP P P A
Sbjct: 261 PAPAAPAAAPPPPPPAPATLARPPGHPAGPPTAAPAVPPPAAAQNGGSAGAAPAPAPAAG 320
Query: 163 SVSGSFTLMRDERAALAS-----------VGHLYGPYGKELPAMGSPLSPLPNALPPALH 211
+G AA A V P + L A G + + P +
Sbjct: 321 GPAGVSGQPGPGAAAAAPAPGVKAESPKRVVQAAPPAAQTLAASGPASTAASMVIGPTMQ 380
Query: 212 GA-PQPPPPPPPPPLAAYGPPGHLAG 236
GA P P PPP P G P AG
Sbjct: 381 GALPSPAAVPPPAPGTPTGLPKGAAG 406
Score = 38.5 bits (88), Expect = 0.014
Identities = 51/182 (28%), Positives = 66/182 (36%), Gaps = 17/182 (9%)
Query: 41 PGRP-GLVAGMASLLDGGGGGGGGGAGGAGGAGSAGGGADFRGELAGPLHPAMGMACEAP 99
PG P G ++ GG AG A A GG ++G P A AP
Sbjct: 284 PGHPAGPPTAAPAVPPPAAAQNGGSAGAAPAPAPAAGGP---AGVSGQPGPGAAAAAPAP 340
Query: 100 GLGGTYTTLTPLQHLPPLA-AVADKFHQHAAAAAVAGAHGGHPHAHPHPAAAPPPPP-PP 157
G+ + +Q PP A +A AA+ V G A P PAA PPP P P
Sbjct: 341 GVKAE-SPKRVVQAAPPAAQTLAASGPASTAASMVIGPT--MQGALPSPAAVPPPAPGTP 397
Query: 158 QRLAASVSGSFT--LMRDERAALASVGHLYGPYGKELPAMGSPLSPLPNALPPALHGAPQ 215
L +G+ T L R A + G P + +P P P P +
Sbjct: 398 TGLPKGAAGAVTQSLSRTPTATTS------GIRATLTPTVLAPRLPQPPQNPTNIQNFQL 451
Query: 216 PP 217
PP
Sbjct: 452 PP 453
>gi|116517292 cut-like 2 [Homo sapiens]
Length = 1486
Score = 81.6 bits (200), Expect = 1e-15
Identities = 78/296 (26%), Positives = 116/296 (39%), Gaps = 54/296 (18%)
Query: 224 PLAAYGPPGHLAGDKLLPPAAFEPHAALLGRAEDALARGLPGGGGGTGSGGAGSGSAAGL 283
P A+ P PP+ EP + +++ L+ L G S S +G
Sbjct: 971 PGASQASPTEPRSSPSPPPSPTEPEKS----SQEPLSLSLESSKENQQPEGRSSSSLSGK 1026
Query: 284 LAPLGGLAAAGAHGPHGGGGGPGGSGGGPSAGAAAEEINTKEVAQRITAELKRYSIPQAI 343
+ + G PGG A + E++T + +R+ L ++ Q +
Sbjct: 1027 M--------------YSGSQAPGGI---QEIVAMSPELDTYSITKRVKEVLTDNNLGQRL 1069
Query: 344 FAQRILCRSQGTLSDLLRNPKPWSKLK-SGRETFRRMWKWLQEP----EFQRMSALRLAA 398
F + IL +QG++SDLL PKPW KL GRE F RM WL +P + + M L A
Sbjct: 1070 FGESILGLTQGSVSDLLSRPKPWHKLSLKGREPFVRMQLWLNDPHNVEKLRDMKKLEKKA 1129
Query: 399 -----------------------CKRKEQEQQKERALQPKKQRLVFTDLQRRTLIAIFKE 435
C + Q LQ KK R+V ++ L ++
Sbjct: 1130 YLKRRYGLISTGSDSESPATRSECPSPCLQPQDLSLLQIKKPRVVLAPEEKEALRKAYQL 1189
Query: 436 NKRPSKEMQVTISQQLGLELNTVSNFFMNARRRCMNRW-----AEEPSTAPGGPAG 486
PS++ +S QL L+ NTV N+F N R R +EP P G G
Sbjct: 1190 EPYPSQQTIELLSFQLNLKTNTVINWFHNYRSRMRREMLVEGTQDEPDLDPSGGPG 1245
Score = 79.7 bits (195), Expect = 6e-15
Identities = 69/217 (31%), Positives = 101/217 (46%), Gaps = 38/217 (17%)
Query: 201 PLPNALPPALHGAPQPPPPPPPPPLA--AYGP-----------PGHLAGDKLL-PPAAFE 246
P P LPP G P P P PL + GP P +G++L+ PPAAF+
Sbjct: 440 PSPQQLPPP-PGPEDPLSPSPGQPLLGPSLGPDGTRTFSLSPFPSLASGERLMMPPAAFK 498
Query: 247 PHAALLGRAEDALARGLPGGGGGTGSGGAGSGSAAGLLAPLGGLAAAGAHGPHGGGGGPG 306
A L A P T + G PLGG A GGGGG
Sbjct: 499 GEAGGLLVFPPAFYGAKPPTAPATPAPGP---------EPLGGPEPAD-----GGGGGAA 544
Query: 307 GSGGGPSAGAAAEEINTKEVAQRITAELKRYSIPQAIFAQRILCRSQGTLSDLLRNPKPW 366
G G A E+++T E+A ++ +L +++I Q +F +L SQG++S++L PKPW
Sbjct: 545 GPG------AEEEQLDTAEIAFQVKEQLLKHNIGQRVFGHYVLGLSQGSVSEILARPKPW 598
Query: 367 SKLK-SGRETFRRMWKWLQEPEFQRMSALRLAACKRK 402
KL G+E F +M ++L + Q + ALR +++
Sbjct: 599 RKLTVKGKEPFIKMKQFLSDE--QNVLALRTIQVRQR 633
Score = 62.8 bits (151), Expect = 7e-10
Identities = 30/67 (44%), Positives = 46/67 (68%), Gaps = 1/67 (1%)
Query: 320 EINTKEVAQRITAELKRYSIPQAIFAQRILCRSQGTLSDLLRNPKPWSKL-KSGRETFRR 378
E++T E+ +++ +L + I Q IF +++L SQG++SD+L PKPWSKL + GRE F R
Sbjct: 895 EVDTLELTRQVKEKLAKNGICQRIFGEKVLGLSQGSVSDMLSRPKPWSKLTQKGREPFIR 954
Query: 379 MWKWLQE 385
M WL +
Sbjct: 955 MQLWLSD 961
>gi|148277064 cut-like homeobox 1 isoform a [Homo sapiens]
Length = 1505
Score = 79.0 bits (193), Expect = 9e-15
Identities = 59/201 (29%), Positives = 93/201 (46%), Gaps = 30/201 (14%)
Query: 316 AAAEEINTKEVAQRITAELKRYSIPQAIFAQRILCRSQGTLSDLLRNPKPWSKLK-SGRE 374
A + E++T + +R+ L ++ Q +F + IL +QG++SDLL PKPW KL GRE
Sbjct: 1121 AMSPELDTYGITKRVKEVLTDNNLGQRLFGETILGLTQGSVSDLLARPKPWHKLSLKGRE 1180
Query: 375 TFRRMWKWLQEP-------EFQRMSALRLAACKRKEQEQQKERALQP------------- 414
F RM WL +P + +RM + A KR+ + +P
Sbjct: 1181 PFVRMQLWLNDPNNVEKLMDMKRME--KKAYMKRRHSSVSDSQPCEPPSVGTEYSQGASP 1238
Query: 415 ------KKQRLVFTDLQRRTLIAIFKENKRPSKEMQVTISQQLGLELNTVSNFFMNARRR 468
KK R+V ++ L +++ PS + ++ QL L+ +TV N+F N R R
Sbjct: 1239 QPQHQLKKPRVVLAPEEKEALKRAYQQKPYPSPKTIEDLATQLNLKTSTVINWFHNYRSR 1298
Query: 469 CMNR-WAEEPSTAPGGPAGAT 488
+ EE G AGA+
Sbjct: 1299 IRRELFIEEIQAGSQGQAGAS 1319
Score = 62.4 bits (150), Expect = 9e-10
Identities = 36/98 (36%), Positives = 63/98 (64%), Gaps = 5/98 (5%)
Query: 313 SAGAAAE--EINTKEVAQRITAELKRYSIPQAIFAQRILCRSQGTLSDLLRNPKPWSKLK 370
SAG+ +E E++T E+A+++ +L +++I Q IF +L SQG++S++L PKPW+KL
Sbjct: 541 SAGSVSEGEEMDTAEIARQVKEQLIKHNIGQRIFGHYVLGLSQGSVSEILARPKPWNKLT 600
Query: 371 -SGRETFRRMWKWLQEPEFQRMSALRLAACKRKEQEQQ 407
G+E F +M ++L + Q + ALR +++E Q
Sbjct: 601 VRGKEPFHKMKQFLSDE--QNILALRSIQGRQRENPGQ 636
Score = 62.4 bits (150), Expect = 9e-10
Identities = 30/66 (45%), Positives = 46/66 (69%), Gaps = 1/66 (1%)
Query: 319 EEINTKEVAQRITAELKRYSIPQAIFAQRILCRSQGTLSDLLRNPKPWSKL-KSGRETFR 377
+E++T E+ +++ +L + I Q IF +++L SQG++SD+L PKPWSKL + GRE F
Sbjct: 941 QEVDTIELTRQVKEKLAKNGICQRIFGEKVLGLSQGSVSDMLSRPKPWSKLTQKGREPFI 1000
Query: 378 RMWKWL 383
RM WL
Sbjct: 1001 RMQLWL 1006
>gi|239757043 PREDICTED: functional smad suppressing element 18
[Homo sapiens]
Length = 996
Score = 74.3 bits (181), Expect = 2e-13
Identities = 94/319 (29%), Positives = 107/319 (33%), Gaps = 106/319 (33%)
Query: 46 LVAGMASL----LDGGGGGGGGGAG-------GAGGAGSAGGGADFRGELAGPLHPAM-- 92
L A ASL GG G GGGGAG G G AG GA +G + P+ P
Sbjct: 329 LSAAAASLSVAAASGGAGTGGGGAGGGCVAGVGVGAGAGAGAGAGAKGPRSYPVIPVPSK 388
Query: 93 ----GMACEAPGLGGTYTTLTPLQHLPPLAAVA-----DKFHQHAAAAAVAGAHGG---- 139
G+ + PG GG L P + P AA A K AAA A+ GA G
Sbjct: 389 GSFGGVLQKFPGCGG----LFPHPYTFPAAAAAFSLCHKKEDAGAAAEALGGAGAGGAGA 444
Query: 140 ------------------------------HPHAHPHPAAAPPPPPPPQRLAASVSGSFT 169
P P P PPP PP L ++ S
Sbjct: 445 APKAGLSGLFWPAGRKDAFYPPFCMFWPPRTPGGLPVPTYLQPPPQPPSALGCALGESPA 504
Query: 170 LMRDERAALASVGHLYGPYGKELPAMGSPLSPLPNALPPALHGAPQPPPPPPPPPLAAYG 229
L+R LA G G A PPP PP + A G
Sbjct: 505 LLRQAFLDLAEPGGAAG-------------------------SAEAAPPPGQPPQVVANG 539
Query: 230 PPGHLAGDKLLPPAAFEPHAALLGRAEDALARGLPGGGGGTGSGGAGSGSAAGLLAPLGG 289
P G PPA + DAL PGG GG S AG P
Sbjct: 540 P-----GSGPPPPAGG-------AGSRDALFESPPGGSGGDCS--------AGSTPPADS 579
Query: 290 LAAAGAHGPHGGGGGPGGS 308
+AAAGA G G GP GS
Sbjct: 580 VAAAGA-GAAAAGSGPAGS 597
Score = 67.8 bits (164), Expect = 2e-11
Identities = 61/170 (35%), Positives = 70/170 (41%), Gaps = 39/170 (22%)
Query: 138 GGHPHAHPHPAAAPPPPPPPQRLAASVSGSFTLMRDERAALASVGHLYGPYGKELPAMGS 197
G A P P A P P AA+V+ + AA+A G L GP+
Sbjct: 238 GSRKRALPQPGAHPACHPLSSVKAAAVAAA--------AAVAGGGGLLGPH--------- 280
Query: 198 PLSPLPNALPPALHGAPQPPPPPPPP-------PLAAYGPPGHLAGDKLLPPAAFEPHAA 250
L GAP PPPPPPPP P A + P D L AA AA
Sbjct: 281 ------------LLGAPPPPPPPPPPLAELAGAPHAHHKRPRFDDDDDSLQEAAVVA-AA 327
Query: 251 LLGRAEDALARGLPGGGGGTGSGGAGSGSAA--GLLAPLGGLAAAGAHGP 298
L A +L+ GG GTG GGAG G A G+ A G A AGA GP
Sbjct: 328 SLSAAAASLSVAAASGGAGTGGGGAGGGCVAGVGVGAGAGAGAGAGAKGP 377
Score = 52.0 bits (123), Expect = 1e-06
Identities = 63/245 (25%), Positives = 77/245 (31%), Gaps = 61/245 (24%)
Query: 3 LSLESLGGLHSVAHAQAGELLSPGHARSAAAQHRGLVAPGRPGLVAGMASLLDGGGGGGG 62
L L GG A A PG A G P G +L + GG G
Sbjct: 511 LDLAEPGGAAGSAEAAP----PPGQPPQVVANGPGSGPPPPAGGAGSRDALFESPPGGSG 566
Query: 63 GGAGG----------AGGAGSAGGGADFRGE-LAGPLHPAMGMACEAPGLGGTYTTLTPL 111
G A GAG+A G+ G + P HP + +A G G+Y +
Sbjct: 567 GDCSAGSTPPADSVAAAGAGAAAAGSGPAGSRVPAPHHPHLLEGRKAGG--GSYHHSSAF 624
Query: 112 QHLPPLAAVADKFHQHAAAAAVAGAHGGHPHAHPHPAAA-----PPPPPPPQRLAASVSG 166
+ + H A+A + HPH H HP PP PP P L
Sbjct: 625 RPVGGKDDAESLAKLHGASAGAPHSAQTHPHHHHHPHHHHHHHHPPQPPSPLLL------ 678
Query: 167 SFTLMRDERAALASVGHLYGPYGKELPAMGSPLSPLPNALPPALHG-APQPPPPPPPPPL 225
L P P+ H AP PPPPPPPPP
Sbjct: 679 --------------------------------LPPQPDEPGSERHHPAPPPPPPPPPPPP 706
Query: 226 AAYGP 230
A P
Sbjct: 707 LAQHP 711
>gi|239751555 PREDICTED: functional smad suppressing element 18
[Homo sapiens]
Length = 1252
Score = 74.3 bits (181), Expect = 2e-13
Identities = 94/319 (29%), Positives = 107/319 (33%), Gaps = 106/319 (33%)
Query: 46 LVAGMASL----LDGGGGGGGGGAG-------GAGGAGSAGGGADFRGELAGPLHPAM-- 92
L A ASL GG G GGGGAG G G AG GA +G + P+ P
Sbjct: 329 LSAAAASLSVAAASGGAGTGGGGAGGGCVAGVGVGAGAGAGAGAGAKGPRSYPVIPVPSK 388
Query: 93 ----GMACEAPGLGGTYTTLTPLQHLPPLAAVA-----DKFHQHAAAAAVAGAHGG---- 139
G+ + PG GG L P + P AA A K AAA A+ GA G
Sbjct: 389 GSFGGVLQKFPGCGG----LFPHPYTFPAAAAAFSLCHKKEDAGAAAEALGGAGAGGAGA 444
Query: 140 ------------------------------HPHAHPHPAAAPPPPPPPQRLAASVSGSFT 169
P P P PPP PP L ++ S
Sbjct: 445 APKAGLSGLFWPAGRKDAFYPPFCMFWPPRTPGGLPVPTYLQPPPQPPSALGCALGESPA 504
Query: 170 LMRDERAALASVGHLYGPYGKELPAMGSPLSPLPNALPPALHGAPQPPPPPPPPPLAAYG 229
L+R LA G G A PPP PP + A G
Sbjct: 505 LLRQAFLDLAEPGGAAG-------------------------SAEAAPPPGQPPQVVANG 539
Query: 230 PPGHLAGDKLLPPAAFEPHAALLGRAEDALARGLPGGGGGTGSGGAGSGSAAGLLAPLGG 289
P G PPA + DAL PGG GG S AG P
Sbjct: 540 P-----GSGPPPPAGG-------AGSRDALFESPPGGSGGDCS--------AGSTPPADS 579
Query: 290 LAAAGAHGPHGGGGGPGGS 308
+AAAGA G G GP GS
Sbjct: 580 VAAAGA-GAAAAGSGPAGS 597
Score = 67.8 bits (164), Expect = 2e-11
Identities = 61/170 (35%), Positives = 70/170 (41%), Gaps = 39/170 (22%)
Query: 138 GGHPHAHPHPAAAPPPPPPPQRLAASVSGSFTLMRDERAALASVGHLYGPYGKELPAMGS 197
G A P P A P P AA+V+ + AA+A G L GP+
Sbjct: 238 GSRKRALPQPGAHPACHPLSSVKAAAVAAA--------AAVAGGGGLLGPH--------- 280
Query: 198 PLSPLPNALPPALHGAPQPPPPPPPP-------PLAAYGPPGHLAGDKLLPPAAFEPHAA 250
L GAP PPPPPPPP P A + P D L AA AA
Sbjct: 281 ------------LLGAPPPPPPPPPPLAELAGAPHAHHKRPRFDDDDDSLQEAAVVA-AA 327
Query: 251 LLGRAEDALARGLPGGGGGTGSGGAGSGSAA--GLLAPLGGLAAAGAHGP 298
L A +L+ GG GTG GGAG G A G+ A G A AGA GP
Sbjct: 328 SLSAAAASLSVAAASGGAGTGGGGAGGGCVAGVGVGAGAGAGAGAGAKGP 377
Score = 52.0 bits (123), Expect = 1e-06
Identities = 63/245 (25%), Positives = 77/245 (31%), Gaps = 61/245 (24%)
Query: 3 LSLESLGGLHSVAHAQAGELLSPGHARSAAAQHRGLVAPGRPGLVAGMASLLDGGGGGGG 62
L L GG A A PG A G P G +L + GG G
Sbjct: 511 LDLAEPGGAAGSAEAAP----PPGQPPQVVANGPGSGPPPPAGGAGSRDALFESPPGGSG 566
Query: 63 GGAGG----------AGGAGSAGGGADFRGE-LAGPLHPAMGMACEAPGLGGTYTTLTPL 111
G A GAG+A G+ G + P HP + +A G G+Y +
Sbjct: 567 GDCSAGSTPPADSVAAAGAGAAAAGSGPAGSRVPAPHHPHLLEGRKAGG--GSYHHSSAF 624
Query: 112 QHLPPLAAVADKFHQHAAAAAVAGAHGGHPHAHPHPAAA-----PPPPPPPQRLAASVSG 166
+ + H A+A + HPH H HP PP PP P L
Sbjct: 625 RPVGGKDDAESLAKLHGASAGAPHSAQTHPHHHHHPHHHHHHHHPPQPPSPLLL------ 678
Query: 167 SFTLMRDERAALASVGHLYGPYGKELPAMGSPLSPLPNALPPALHG-APQPPPPPPPPPL 225
L P P+ H AP PPPPPPPPP
Sbjct: 679 --------------------------------LPPQPDEPGSERHHPAPPPPPPPPPPPP 706
Query: 226 AAYGP 230
A P
Sbjct: 707 LAQHP 711
>gi|239746067 PREDICTED: functional smad suppressing element 18
[Homo sapiens]
Length = 1252
Score = 74.3 bits (181), Expect = 2e-13
Identities = 94/319 (29%), Positives = 107/319 (33%), Gaps = 106/319 (33%)
Query: 46 LVAGMASL----LDGGGGGGGGGAG-------GAGGAGSAGGGADFRGELAGPLHPAM-- 92
L A ASL GG G GGGGAG G G AG GA +G + P+ P
Sbjct: 329 LSAAAASLSVAAASGGAGTGGGGAGGGCVAGVGVGAGAGAGAGAGAKGPRSYPVIPVPSK 388
Query: 93 ----GMACEAPGLGGTYTTLTPLQHLPPLAAVA-----DKFHQHAAAAAVAGAHGG---- 139
G+ + PG GG L P + P AA A K AAA A+ GA G
Sbjct: 389 GSFGGVLQKFPGCGG----LFPHPYTFPAAAAAFSLCHKKEDAGAAAEALGGAGAGGAGA 444
Query: 140 ------------------------------HPHAHPHPAAAPPPPPPPQRLAASVSGSFT 169
P P P PPP PP L ++ S
Sbjct: 445 APKAGLSGLFWPAGRKDAFYPPFCMFWPPRTPGGLPVPTYLQPPPQPPSALGCALGESPA 504
Query: 170 LMRDERAALASVGHLYGPYGKELPAMGSPLSPLPNALPPALHGAPQPPPPPPPPPLAAYG 229
L+R LA G G A PPP PP + A G
Sbjct: 505 LLRQAFLDLAEPGGAAG-------------------------SAEAAPPPGQPPQVVANG 539
Query: 230 PPGHLAGDKLLPPAAFEPHAALLGRAEDALARGLPGGGGGTGSGGAGSGSAAGLLAPLGG 289
P G PPA + DAL PGG GG S AG P
Sbjct: 540 P-----GSGPPPPAGG-------AGSRDALFESPPGGSGGDCS--------AGSTPPADS 579
Query: 290 LAAAGAHGPHGGGGGPGGS 308
+AAAGA G G GP GS
Sbjct: 580 VAAAGA-GAAAAGSGPAGS 597
Score = 67.8 bits (164), Expect = 2e-11
Identities = 61/170 (35%), Positives = 70/170 (41%), Gaps = 39/170 (22%)
Query: 138 GGHPHAHPHPAAAPPPPPPPQRLAASVSGSFTLMRDERAALASVGHLYGPYGKELPAMGS 197
G A P P A P P AA+V+ + AA+A G L GP+
Sbjct: 238 GSRKRALPQPGAHPACHPLSSVKAAAVAAA--------AAVAGGGGLLGPH--------- 280
Query: 198 PLSPLPNALPPALHGAPQPPPPPPPP-------PLAAYGPPGHLAGDKLLPPAAFEPHAA 250
L GAP PPPPPPPP P A + P D L AA AA
Sbjct: 281 ------------LLGAPPPPPPPPPPLAELAGAPHAHHKRPRFDDDDDSLQEAAVVA-AA 327
Query: 251 LLGRAEDALARGLPGGGGGTGSGGAGSGSAA--GLLAPLGGLAAAGAHGP 298
L A +L+ GG GTG GGAG G A G+ A G A AGA GP
Sbjct: 328 SLSAAAASLSVAAASGGAGTGGGGAGGGCVAGVGVGAGAGAGAGAGAKGP 377
Score = 52.0 bits (123), Expect = 1e-06
Identities = 63/245 (25%), Positives = 77/245 (31%), Gaps = 61/245 (24%)
Query: 3 LSLESLGGLHSVAHAQAGELLSPGHARSAAAQHRGLVAPGRPGLVAGMASLLDGGGGGGG 62
L L GG A A PG A G P G +L + GG G
Sbjct: 511 LDLAEPGGAAGSAEAAP----PPGQPPQVVANGPGSGPPPPAGGAGSRDALFESPPGGSG 566
Query: 63 GGAGG----------AGGAGSAGGGADFRGE-LAGPLHPAMGMACEAPGLGGTYTTLTPL 111
G A GAG+A G+ G + P HP + +A G G+Y +
Sbjct: 567 GDCSAGSTPPADSVAAAGAGAAAAGSGPAGSRVPAPHHPHLLEGRKAGG--GSYHHSSAF 624
Query: 112 QHLPPLAAVADKFHQHAAAAAVAGAHGGHPHAHPHPAAA-----PPPPPPPQRLAASVSG 166
+ + H A+A + HPH H HP PP PP P L
Sbjct: 625 RPVGGKDDAESLAKLHGASAGAPHSAQTHPHHHHHPHHHHHHHHPPQPPSPLLL------ 678
Query: 167 SFTLMRDERAALASVGHLYGPYGKELPAMGSPLSPLPNALPPALHG-APQPPPPPPPPPL 225
L P P+ H AP PPPPPPPPP
Sbjct: 679 --------------------------------LPPQPDEPGSERHHPAPPPPPPPPPPPP 706
Query: 226 AAYGP 230
A P
Sbjct: 707 LAQHP 711
>gi|40068464 AT rich interactive domain 1B (SWI1-like) isoform 2
[Homo sapiens]
Length = 2191
Score = 70.1 bits (170), Expect = 4e-12
Identities = 86/305 (28%), Positives = 109/305 (35%), Gaps = 93/305 (30%)
Query: 8 LGGLHSVAHAQAGELLSPGHARSAAAQHRGLVA------PG--RPGLVAGMASLLDGGGG 59
+G +HS + A AG +PG H G PG RPG GGGG
Sbjct: 205 MGMMHSASAAAAG---APGSMDPLQNSHEGYPNSQCNHYPGYSRPGA---------GGGG 252
Query: 60 GGGGGAGGAGGAGSAGGGADFRGELAGPLHPAMGMACEAPGLGG---------TYTTL-T 109
GGGGG GG G G GGGA G AG + A A A G GG Y L +
Sbjct: 253 GGGGGGGGGSGGGGGGGGAGAGGAGAGAVAAAAAAAAAAAGGGGGGGYGGSSAGYGVLSS 312
Query: 110 PLQH-----LPPLAAVADKFHQHAAAAAVAG----------------------------- 135
P Q + P A + AA +A G
Sbjct: 313 PRQQGGGMMMGPGGGGAASLSKAAAGSAAGGFQRFAGQNQHPSGATPTLNQLLTSPSPMM 372
Query: 136 -AHGGHPHAHPHPAAAPPPPPPPQRLAAS---------VSGSFTLMRDERAALASVGHLY 185
++GG + P+A PPPP PQ AA+ + L +D A A+ +
Sbjct: 373 RSYGGSYPEYSSPSAPPPPPSQPQSQAAAAGAAAGGQQAAAGMGLGKDMGAQYAAASPAW 432
Query: 186 -GPYGKELPAM-------------GSPLSPLPNALPPALHGAPQPPPPPP----PPPLAA 227
+ PAM GSP+ P+ P L+G P P P P +
Sbjct: 433 AAAQQRSHPAMSPGTPGPTMGRSQGSPMDPMV-MKRPQLYGMGSNPHSQPQQSSPYPGGS 491
Query: 228 YGPPG 232
YGPPG
Sbjct: 492 YGPPG 496
Score = 59.7 bits (143), Expect = 6e-09
Identities = 75/251 (29%), Positives = 82/251 (32%), Gaps = 34/251 (13%)
Query: 72 GSAGGGADFRGELAGPLHPAMGMACEAPGLGGTYTTLTPLQHLPPLAAVADKFHQHAAAA 131
G AGGGA P G E P GG + Q PP + K A
Sbjct: 83 GGAGGGA-----------PQPGPDMEQPQHGGAKDSAAGGQADPPGPPLLSKPGDEDDAP 131
Query: 132 AVAGAHGGHPHAHPHPAAAPPPPPPPQRLAASVSGSFTLMRDERAALASVGHLYGPYGKE 191
G G + HP A PP +V G A+V YG
Sbjct: 132 PKMGEPAGGRYEHPGLGALGTQQPP-----VAVPGG-------GGGPAAVPEFNNYYGSA 179
Query: 192 LPAMGSPLSPLPNALPPALHGAPQPPPPPP--PPPLAAYGPPGHLAGDKLLPPAAFEP-- 247
PA G P HG Q P AA G PG + D L P
Sbjct: 180 APASGGPGGRAGPCFDQ--HGGQQSPGMGMMHSASAAAAGAPGSM--DPLQNSHEGYPNS 235
Query: 248 ---HAALLGRAEDALARGLPGGGGGTGSGGAGSGSAAGLLAPLGGLAAAGAHGPHGGGGG 304
H R G GGGGG GG G G A A G +AAA A GGG
Sbjct: 236 QCNHYPGYSRPGAGGGGGGGGGGGGGSGGGGGGGGAGAGGAGAGAVAAAAAAAAAAAGGG 295
Query: 305 PGGSGGGPSAG 315
GG GG SAG
Sbjct: 296 GGGGYGGSSAG 306
Score = 38.9 bits (89), Expect = 0.011
Identities = 55/200 (27%), Positives = 67/200 (33%), Gaps = 17/200 (8%)
Query: 137 HGGHPHAHPHPAAAPPPPPPPQRLAASVSGSFTLMRDERAALASVGHLYGPYGK-ELPAM 195
HGG + A PP PP S G DE A +G G G+ E P +
Sbjct: 101 HGGAKDSAAGGQADPPGPP-----LLSKPG------DEDDAPPKMGEPAG--GRYEHPGL 147
Query: 196 GSPLSPLPNALPPALHGAPQPPPPPPP---PPLAAYGPPGHLAGDKLLPPAAFEPHAALL 252
G+ + P P G P P A G PG AG + +
Sbjct: 148 GALGTQQPPVAVPGGGGGPAAVPEFNNYYGSAAPASGGPGGRAGPCFDQHGGQQSPGMGM 207
Query: 253 GRAEDALARGLPGGGGGTGSGGAGSGSAAGLLAPLGGLAAAGAHGPHGGGGGPGGSGGGP 312
+ A A G PG + G ++ P AG G GGGGG G GGG
Sbjct: 208 MHSASAAAAGAPGSMDPLQNSHEGYPNSQCNHYPGYSRPGAGGGGGGGGGGGGGSGGGGG 267
Query: 313 SAGAAAEEINTKEVAQRITA 332
GA A VA A
Sbjct: 268 GGGAGAGGAGAGAVAAAAAA 287
Score = 30.0 bits (66), Expect = 5.0
Identities = 43/180 (23%), Positives = 59/180 (32%), Gaps = 42/180 (23%)
Query: 141 PHAHPHPAAAPPPPPPPQRLAASVSGSFTLMRDERAALASVGHLYGPYGKELPAMGSPLS 200
PHA PH ++ P P P S GS R+ S + G ++P P S
Sbjct: 664 PHASPHLSSIPGGPSP------SPVGSPVGSNQSRSGPISPASI---PGSQMPPQ-PPGS 713
Query: 201 PLPNALPPALHGAPQPPP------PPPPPPLAAYGPPGHLAGDKLLPPAAFEPHAALLGR 254
++ PAL +P P P +A YGP + PH +
Sbjct: 714 QSESSSHPALSQSPMPQERGFMAGTQRNPQMAQYGPQ--------QTGPSMSPHPS---- 761
Query: 255 AEDALARGLPGGGGGTGSGGAGSGSAAGLLAPLGGLAAAGAHGPHGGGGGPGGSGGGPSA 314
PGG G +++G P +GP G P G PSA
Sbjct: 762 ---------PGGQMHAGISSFQQSNSSGTYGP-----QMSQYGPQGNYSRPPAYSGVPSA 807
>gi|40068466 AT rich interactive domain 1B (SWI1-like) isoform 1
[Homo sapiens]
Length = 2231
Score = 70.1 bits (170), Expect = 4e-12
Identities = 86/305 (28%), Positives = 109/305 (35%), Gaps = 93/305 (30%)
Query: 8 LGGLHSVAHAQAGELLSPGHARSAAAQHRGLVA------PG--RPGLVAGMASLLDGGGG 59
+G +HS + A AG +PG H G PG RPG GGGG
Sbjct: 205 MGMMHSASAAAAG---APGSMDPLQNSHEGYPNSQCNHYPGYSRPGA---------GGGG 252
Query: 60 GGGGGAGGAGGAGSAGGGADFRGELAGPLHPAMGMACEAPGLGG---------TYTTL-T 109
GGGGG GG G G GGGA G AG + A A A G GG Y L +
Sbjct: 253 GGGGGGGGGSGGGGGGGGAGAGGAGAGAVAAAAAAAAAAAGGGGGGGYGGSSAGYGVLSS 312
Query: 110 PLQH-----LPPLAAVADKFHQHAAAAAVAG----------------------------- 135
P Q + P A + AA +A G
Sbjct: 313 PRQQGGGMMMGPGGGGAASLSKAAAGSAAGGFQRFAGQNQHPSGATPTLNQLLTSPSPMM 372
Query: 136 -AHGGHPHAHPHPAAAPPPPPPPQRLAAS---------VSGSFTLMRDERAALASVGHLY 185
++GG + P+A PPPP PQ AA+ + L +D A A+ +
Sbjct: 373 RSYGGSYPEYSSPSAPPPPPSQPQSQAAAAGAAAGGQQAAAGMGLGKDMGAQYAAASPAW 432
Query: 186 -GPYGKELPAM-------------GSPLSPLPNALPPALHGAPQPPPPPP----PPPLAA 227
+ PAM GSP+ P+ P L+G P P P P +
Sbjct: 433 AAAQQRSHPAMSPGTPGPTMGRSQGSPMDPMV-MKRPQLYGMGSNPHSQPQQSSPYPGGS 491
Query: 228 YGPPG 232
YGPPG
Sbjct: 492 YGPPG 496
Score = 59.7 bits (143), Expect = 6e-09
Identities = 75/251 (29%), Positives = 82/251 (32%), Gaps = 34/251 (13%)
Query: 72 GSAGGGADFRGELAGPLHPAMGMACEAPGLGGTYTTLTPLQHLPPLAAVADKFHQHAAAA 131
G AGGGA P G E P GG + Q PP + K A
Sbjct: 83 GGAGGGA-----------PQPGPDMEQPQHGGAKDSAAGGQADPPGPPLLSKPGDEDDAP 131
Query: 132 AVAGAHGGHPHAHPHPAAAPPPPPPPQRLAASVSGSFTLMRDERAALASVGHLYGPYGKE 191
G G + HP A PP +V G A+V YG
Sbjct: 132 PKMGEPAGGRYEHPGLGALGTQQPP-----VAVPGG-------GGGPAAVPEFNNYYGSA 179
Query: 192 LPAMGSPLSPLPNALPPALHGAPQPPPPPP--PPPLAAYGPPGHLAGDKLLPPAAFEP-- 247
PA G P HG Q P AA G PG + D L P
Sbjct: 180 APASGGPGGRAGPCFDQ--HGGQQSPGMGMMHSASAAAAGAPGSM--DPLQNSHEGYPNS 235
Query: 248 ---HAALLGRAEDALARGLPGGGGGTGSGGAGSGSAAGLLAPLGGLAAAGAHGPHGGGGG 304
H R G GGGGG GG G G A A G +AAA A GGG
Sbjct: 236 QCNHYPGYSRPGAGGGGGGGGGGGGGSGGGGGGGGAGAGGAGAGAVAAAAAAAAAAAGGG 295
Query: 305 PGGSGGGPSAG 315
GG GG SAG
Sbjct: 296 GGGGYGGSSAG 306
Score = 38.9 bits (89), Expect = 0.011
Identities = 55/200 (27%), Positives = 67/200 (33%), Gaps = 17/200 (8%)
Query: 137 HGGHPHAHPHPAAAPPPPPPPQRLAASVSGSFTLMRDERAALASVGHLYGPYGK-ELPAM 195
HGG + A PP PP S G DE A +G G G+ E P +
Sbjct: 101 HGGAKDSAAGGQADPPGPP-----LLSKPG------DEDDAPPKMGEPAG--GRYEHPGL 147
Query: 196 GSPLSPLPNALPPALHGAPQPPPPPPP---PPLAAYGPPGHLAGDKLLPPAAFEPHAALL 252
G+ + P P G P P A G PG AG + +
Sbjct: 148 GALGTQQPPVAVPGGGGGPAAVPEFNNYYGSAAPASGGPGGRAGPCFDQHGGQQSPGMGM 207
Query: 253 GRAEDALARGLPGGGGGTGSGGAGSGSAAGLLAPLGGLAAAGAHGPHGGGGGPGGSGGGP 312
+ A A G PG + G ++ P AG G GGGGG G GGG
Sbjct: 208 MHSASAAAAGAPGSMDPLQNSHEGYPNSQCNHYPGYSRPGAGGGGGGGGGGGGGSGGGGG 267
Query: 313 SAGAAAEEINTKEVAQRITA 332
GA A VA A
Sbjct: 268 GGGAGAGGAGAGAVAAAAAA 287
Score = 30.0 bits (66), Expect = 5.0
Identities = 43/180 (23%), Positives = 59/180 (32%), Gaps = 42/180 (23%)
Query: 141 PHAHPHPAAAPPPPPPPQRLAASVSGSFTLMRDERAALASVGHLYGPYGKELPAMGSPLS 200
PHA PH ++ P P P S GS R+ S + G ++P P S
Sbjct: 651 PHASPHLSSIPGGPSP------SPVGSPVGSNQSRSGPISPASI---PGSQMPPQ-PPGS 700
Query: 201 PLPNALPPALHGAPQPPP------PPPPPPLAAYGPPGHLAGDKLLPPAAFEPHAALLGR 254
++ PAL +P P P +A YGP + PH +
Sbjct: 701 QSESSSHPALSQSPMPQERGFMAGTQRNPQMAQYGPQ--------QTGPSMSPHPS---- 748
Query: 255 AEDALARGLPGGGGGTGSGGAGSGSAAGLLAPLGGLAAAGAHGPHGGGGGPGGSGGGPSA 314
PGG G +++G P +GP G P G PSA
Sbjct: 749 ---------PGGQMHAGISSFQQSNSSGTYGP-----QMSQYGPQGNYSRPPAYSGVPSA 794
>gi|40068462 AT rich interactive domain 1B (SWI1-like) isoform 3
[Homo sapiens]
Length = 2178
Score = 70.1 bits (170), Expect = 4e-12
Identities = 86/305 (28%), Positives = 109/305 (35%), Gaps = 93/305 (30%)
Query: 8 LGGLHSVAHAQAGELLSPGHARSAAAQHRGLVA------PG--RPGLVAGMASLLDGGGG 59
+G +HS + A AG +PG H G PG RPG GGGG
Sbjct: 205 MGMMHSASAAAAG---APGSMDPLQNSHEGYPNSQCNHYPGYSRPGA---------GGGG 252
Query: 60 GGGGGAGGAGGAGSAGGGADFRGELAGPLHPAMGMACEAPGLGG---------TYTTL-T 109
GGGGG GG G G GGGA G AG + A A A G GG Y L +
Sbjct: 253 GGGGGGGGGSGGGGGGGGAGAGGAGAGAVAAAAAAAAAAAGGGGGGGYGGSSAGYGVLSS 312
Query: 110 PLQH-----LPPLAAVADKFHQHAAAAAVAG----------------------------- 135
P Q + P A + AA +A G
Sbjct: 313 PRQQGGGMMMGPGGGGAASLSKAAAGSAAGGFQRFAGQNQHPSGATPTLNQLLTSPSPMM 372
Query: 136 -AHGGHPHAHPHPAAAPPPPPPPQRLAAS---------VSGSFTLMRDERAALASVGHLY 185
++GG + P+A PPPP PQ AA+ + L +D A A+ +
Sbjct: 373 RSYGGSYPEYSSPSAPPPPPSQPQSQAAAAGAAAGGQQAAAGMGLGKDMGAQYAAASPAW 432
Query: 186 -GPYGKELPAM-------------GSPLSPLPNALPPALHGAPQPPPPPP----PPPLAA 227
+ PAM GSP+ P+ P L+G P P P P +
Sbjct: 433 AAAQQRSHPAMSPGTPGPTMGRSQGSPMDPMV-MKRPQLYGMGSNPHSQPQQSSPYPGGS 491
Query: 228 YGPPG 232
YGPPG
Sbjct: 492 YGPPG 496
Score = 59.7 bits (143), Expect = 6e-09
Identities = 75/251 (29%), Positives = 82/251 (32%), Gaps = 34/251 (13%)
Query: 72 GSAGGGADFRGELAGPLHPAMGMACEAPGLGGTYTTLTPLQHLPPLAAVADKFHQHAAAA 131
G AGGGA P G E P GG + Q PP + K A
Sbjct: 83 GGAGGGA-----------PQPGPDMEQPQHGGAKDSAAGGQADPPGPPLLSKPGDEDDAP 131
Query: 132 AVAGAHGGHPHAHPHPAAAPPPPPPPQRLAASVSGSFTLMRDERAALASVGHLYGPYGKE 191
G G + HP A PP +V G A+V YG
Sbjct: 132 PKMGEPAGGRYEHPGLGALGTQQPP-----VAVPGG-------GGGPAAVPEFNNYYGSA 179
Query: 192 LPAMGSPLSPLPNALPPALHGAPQPPPPPP--PPPLAAYGPPGHLAGDKLLPPAAFEP-- 247
PA G P HG Q P AA G PG + D L P
Sbjct: 180 APASGGPGGRAGPCFDQ--HGGQQSPGMGMMHSASAAAAGAPGSM--DPLQNSHEGYPNS 235
Query: 248 ---HAALLGRAEDALARGLPGGGGGTGSGGAGSGSAAGLLAPLGGLAAAGAHGPHGGGGG 304
H R G GGGGG GG G G A A G +AAA A GGG
Sbjct: 236 QCNHYPGYSRPGAGGGGGGGGGGGGGSGGGGGGGGAGAGGAGAGAVAAAAAAAAAAAGGG 295
Query: 305 PGGSGGGPSAG 315
GG GG SAG
Sbjct: 296 GGGGYGGSSAG 306
Score = 38.9 bits (89), Expect = 0.011
Identities = 55/200 (27%), Positives = 67/200 (33%), Gaps = 17/200 (8%)
Query: 137 HGGHPHAHPHPAAAPPPPPPPQRLAASVSGSFTLMRDERAALASVGHLYGPYGK-ELPAM 195
HGG + A PP PP S G DE A +G G G+ E P +
Sbjct: 101 HGGAKDSAAGGQADPPGPP-----LLSKPG------DEDDAPPKMGEPAG--GRYEHPGL 147
Query: 196 GSPLSPLPNALPPALHGAPQPPPPPPP---PPLAAYGPPGHLAGDKLLPPAAFEPHAALL 252
G+ + P P G P P A G PG AG + +
Sbjct: 148 GALGTQQPPVAVPGGGGGPAAVPEFNNYYGSAAPASGGPGGRAGPCFDQHGGQQSPGMGM 207
Query: 253 GRAEDALARGLPGGGGGTGSGGAGSGSAAGLLAPLGGLAAAGAHGPHGGGGGPGGSGGGP 312
+ A A G PG + G ++ P AG G GGGGG G GGG
Sbjct: 208 MHSASAAAAGAPGSMDPLQNSHEGYPNSQCNHYPGYSRPGAGGGGGGGGGGGGGSGGGGG 267
Query: 313 SAGAAAEEINTKEVAQRITA 332
GA A VA A
Sbjct: 268 GGGAGAGGAGAGAVAAAAAA 287
Score = 30.0 bits (66), Expect = 5.0
Identities = 43/180 (23%), Positives = 59/180 (32%), Gaps = 42/180 (23%)
Query: 141 PHAHPHPAAAPPPPPPPQRLAASVSGSFTLMRDERAALASVGHLYGPYGKELPAMGSPLS 200
PHA PH ++ P P P S GS R+ S + G ++P P S
Sbjct: 651 PHASPHLSSIPGGPSP------SPVGSPVGSNQSRSGPISPASI---PGSQMPPQ-PPGS 700
Query: 201 PLPNALPPALHGAPQPPP------PPPPPPLAAYGPPGHLAGDKLLPPAAFEPHAALLGR 254
++ PAL +P P P +A YGP + PH +
Sbjct: 701 QSESSSHPALSQSPMPQERGFMAGTQRNPQMAQYGPQ--------QTGPSMSPHPS---- 748
Query: 255 AEDALARGLPGGGGGTGSGGAGSGSAAGLLAPLGGLAAAGAHGPHGGGGGPGGSGGGPSA 314
PGG G +++G P +GP G P G PSA
Sbjct: 749 ---------PGGQMHAGISSFQQSNSSGTYGP-----QMSQYGPQGNYSRPPAYSGVPSA 794
>gi|110349772 alpha 1 type I collagen preproprotein [Homo sapiens]
Length = 1464
Score = 66.6 bits (161), Expect = 5e-11
Identities = 98/321 (30%), Positives = 115/321 (35%), Gaps = 32/321 (9%)
Query: 15 AHAQAGELLSPGHARSAA----AQHRGLVAPGRPGLVAGMASLLDGGGGGGGGGAGGAGG 70
A QAG + PG +A A RG+ PG PG V + G G G AG AG
Sbjct: 573 ARGQAGVMGFPGPKGAAGEPGKAGERGV--PGPPGAVGPAGKDGEAGAQGPPGPAGPAGE 630
Query: 71 AGSAG--GGADFRGELAGPLHPAMGMACEA--PGLGGTYTTLTPLQHLPPLAAVADKFHQ 126
G G G F+G L GP P G A + G+ G P ++ Q
Sbjct: 631 RGEQGPAGSPGFQG-LPGPAGPP-GEAGKPGEQGVPGDLGAPGPSGARGERGFPGERGVQ 688
Query: 127 HAAAAAVAGAHGGHPHAHPHPAAAPPPPPPPQRLAASVSGSFTLMRDERAALASVGHLYG 186
A G P A P P + A + G M ER A G G
Sbjct: 689 GPPGPAGPRGANGAPGNDGAKGDAGAPGAPGSQGAPGLQG----MPGERGAAGLPGPK-G 743
Query: 187 PYGKELP--AMGSPLSPLPNAL-----PPALHGAP----QPPPPPPPPPLAAYGPPGHLA 235
G P A GSP L PP GAP + P P P A G PG
Sbjct: 744 DRGDAGPKGADGSPGKDGVRGLTGPIGPPGPAGAPGDKGESGPSGPAGPTGARGAPGDRG 803
Query: 236 GDKLLPPAAFEPHAALLGRAEDALARGLPGGGGGTGSGGA-GSGSAAGLLAPLGGLAAAG 294
PA F A G A+G PG G G G G AG P+G + A G
Sbjct: 804 EPGPPGPAGF---AGPPGADGQPGAKGEPGDAGAKGDAGPPGPAGPAGPPGPIGNVGAPG 860
Query: 295 AHGPHGGGGGPGGSGGGPSAG 315
A G G G PG +G +AG
Sbjct: 861 AKGARGSAGPPGATGFPGAAG 881
Score = 58.2 bits (139), Expect = 2e-08
Identities = 98/317 (30%), Positives = 115/317 (36%), Gaps = 59/317 (18%)
Query: 41 PGRPGLVAGMASLLDGGGGGGGGGAGGAGGAGSAGGGADFRGEL--AGPLHPA-----MG 93
PG PG AG A G G GA GA GA G F G +GP P G
Sbjct: 373 PGPPG-PAGAAGPAGNPGADGQPGAKGANGAPGIAGAPGFPGARGPSGPQGPGGPPGPKG 431
Query: 94 MACE--APGL-GGTYTTLTP----LQHLPPLAAVADK--FHQHAAAAAVAGAHG--GHPH 142
+ E APG G T P +Q P A K + G G G P
Sbjct: 432 NSGEPGAPGSKGDTGAKGEPGPVGVQGPPGPAGEEGKRGARGEPGPTGLPGPPGERGGPG 491
Query: 143 AHPHPAA---APPPPPPPQRLAASVSGSFTLMRDERAALASVGHLYGPYGKELPAMGSPL 199
+ P A A P P +R + +G + G P K L GSP
Sbjct: 492 SRGFPGADGVAGPKGPAGERGSPGPAGP----KGSPGEAGRPGEAGLPGAKGLT--GSPG 545
Query: 200 SPLPNAL-----PPALHGAPQPPPPPP----------PPPLAAYGPPGHLAGDKLLP--P 242
SP P+ P G P PP PP P P A G PG AG++ +P P
Sbjct: 546 SPGPDGKTGPPGPAGQDGRPGPPGPPGARGQAGVMGFPGPKGAAGEPGK-AGERGVPGPP 604
Query: 243 AAFEPHAALLGRAEDALARGLPGGGGGTG----SGGAGSGSAAGLLAPLGGLAAAGAHGP 298
A P G+ +A A+G PG G G G AGS GL P G AG G
Sbjct: 605 GAVGP----AGKDGEAGAQGPPGPAGPAGERGEQGPAGSPGFQGLPGPAGPPGEAGKPGE 660
Query: 299 HG-----GGGGPGGSGG 310
G G GP G+ G
Sbjct: 661 QGVPGDLGAPGPSGARG 677
Score = 54.7 bits (130), Expect = 2e-07
Identities = 89/304 (29%), Positives = 103/304 (33%), Gaps = 65/304 (21%)
Query: 20 GELLSPGHARSAAAQH-RGLVAP-GRPGLVAGMASLLDGGGGGGGGGAGGAGGAGSAG-- 75
GE SPG + RGL GRPG + + G G G G G AG G
Sbjct: 287 GEPGSPGENGAPGQMGPRGLPGERGRPGAPGPAGARGNDGATGAAGPPGPTGPAGPPGFP 346
Query: 76 GGADFRGELAGPLHPAMGMACEAP-GLGGTYTTLTPLQHLPPLAAVADKFHQHAAAAAVA 134
G +GE AGP P E P G+ G + PP A A A A
Sbjct: 347 GAVGAKGE-AGPQGPR---GSEGPQGVRG--------EPGPPGPAGA------AGPAGNP 388
Query: 135 GAHG--GHPHAHPHPAAAPPPPPPPQRLAASVSGSFTLMRDERAALASVGHLYGPYGKEL 192
GA G G A+ P A P P R GP G +
Sbjct: 389 GADGQPGAKGANGAPGIAGAPGFPGAR--------------------------GPSGPQG 422
Query: 193 PAMGSPLSPLPNALPPALHGAP-QPPPPPPPPPLAAYGPPGHLAGDKLLPPAAFEPHAAL 251
P G P P N+ P G+ P P+ GPPG PA E
Sbjct: 423 P--GGPPGPKGNSGEPGAPGSKGDTGAKGEPGPVGVQGPPG---------PAGEEGKRGA 471
Query: 252 LGRAEDALARGLPGGGGGTGSGGAGSGSAAGLLAPLGGLAAAGAHGPHGGGGGPGGSGGG 311
G G PG GG GS G A G+ P G G+ GP G G PG +G
Sbjct: 472 RGEPGPTGLPGPPGERGGPGS--RGFPGADGVAGPKGPAGERGSPGPAGPKGSPGEAGRP 529
Query: 312 PSAG 315
AG
Sbjct: 530 GEAG 533
Score = 54.7 bits (130), Expect = 2e-07
Identities = 85/298 (28%), Positives = 98/298 (32%), Gaps = 49/298 (16%)
Query: 41 PGRPGLVAGMASLLDGGGGGGGGGAGGAGGAGSAG--GGADFRGELAGPLHPAMGMACEA 98
PG G + D G G G AG G G+ G G RG AGP P A
Sbjct: 823 PGAKGEPGDAGAKGDAGPPGPAGPAGPPGPIGNVGAPGAKGARGS-AGP--PG---ATGF 876
Query: 99 PGLGGTYTTLTPLQHLPPLAAVADKFHQHAAAAAVAGAHGGH-PHAHPHPAAAP------ 151
PG G P + P AG GG P PA P
Sbjct: 877 PGAAGRVGPPGPSGNAGP-----------PGPPGPAGKEGGKGPRGETGPAGRPGEVGPP 925
Query: 152 -PPPPPPQRLAASVSGSF----TLMRDERAALASVGHLYGPYGKE-LPAMGSPLSPLPNA 205
PP P ++ + G T A V L G G+ P + P
Sbjct: 926 GPPGPAGEKGSPGADGPAGAPGTPGPQGIAGQRGVVGLPGQRGERGFPGLPGPSGEPGKQ 985
Query: 206 LPPALHGAPQPPPPPPPPPLAAYGPPGHLAGDKLLPPAAFEP----------HAALLGRA 255
P G PP P PP LA GPPG +G + P A P G A
Sbjct: 986 GPSGASGERGPPGPMGPPGLA--GPPGE-SGREGAPGAEGSPGRDGSPGAKGDRGETGPA 1042
Query: 256 EDALARGLPGGGGGTG----SGGAGSGSAAGLLAPLGGLAAAGAHGPHGGGGGPGGSG 309
A G PG G G SG G AG P+G + A G GP G G G +G
Sbjct: 1043 GPPGAPGAPGAPGPVGPAGKSGDRGETGPAGPAGPVGPVGARGPAGPQGPRGDKGETG 1100
Score = 52.0 bits (123), Expect = 1e-06
Identities = 94/332 (28%), Positives = 104/332 (31%), Gaps = 78/332 (23%)
Query: 19 AGELLSPGHARSAAAQHRGLVAPGRPGLVAGMASLLDGGGGGGGGGAGGAGGAGSAG--- 75
AGE SPG A + PG GL G G G G G AG G
Sbjct: 508 AGERGSPGPAGPKGSPGEA-GRPGEAGLPGAKGLTGSPGSPGPDGKTGPPGPAGQDGRPG 566
Query: 76 --GGADFRGELAGPLHPAMGMACEAPGLGGTYTTLTPLQHLPPLAAVADKFHQHAAAAAV 133
G RG+ P A PG G P + P A
Sbjct: 567 PPGPPGARGQAGVMGFPGPKGAAGEPGKAGERGVPGPPGAVGP-----------AGKDGE 615
Query: 134 AGAHGGHPHAHPHPAAAPPPPPPPQRLAASVSGSFTLMRDERAALASVGH--LYGPYGKE 191
AGA G PP P P +G R E+ S G L GP G
Sbjct: 616 AGAQG------------PPGPAGP-------AGE----RGEQGPAGSPGFQGLPGPAGPP 652
Query: 192 LPAMGSPLSPLPNALPPALHGAPQPP----------------PPPPPPPLAAYGPPGH-- 233
G P +P L GAP P PP P P A G PG+
Sbjct: 653 ----GEAGKPGEQGVPGDL-GAPGPSGARGERGFPGERGVQGPPGPAGPRGANGAPGNDG 707
Query: 234 LAGDKLLPPAAFEPHA-ALLGRAEDALARGLPGGGGGTGSGGA-------GSGSAAGLLA 285
GD P A A L G + A GLPG G G G G GL
Sbjct: 708 AKGDAGAPGAPGSQGAPGLQGMPGERGAAGLPGPKGDRGDAGPKGADGSPGKDGVRGLTG 767
Query: 286 PLGGLAAAGAHGPHG-----GGGGPGGSGGGP 312
P+G AGA G G G GP G+ G P
Sbjct: 768 PIGPPGPAGAPGDKGESGPSGPAGPTGARGAP 799
Score = 52.0 bits (123), Expect = 1e-06
Identities = 86/319 (26%), Positives = 109/319 (34%), Gaps = 37/319 (11%)
Query: 20 GELLSPGH--ARSAAAQHRGLVAPGRPGLVAGMASLLDGGGGGGGGGAGGAGGAGSAG-- 75
G + +PG AR +A PG G V + G G G AG GG G G
Sbjct: 854 GNVGAPGAKGARGSAGPPGATGFPGAAGRVGPPGPSGNAGPPGPPGPAGKEGGKGPRGET 913
Query: 76 GGADFRGELAGPLHPAMGMACEAPGLGGTYTTLTPLQHLPPLAAVADKFHQHAAAAAVAG 135
G A GE+ P P +PG G P A Q A
Sbjct: 914 GPAGRPGEVGPPGPPGPAGEKGSPGADG------------PAGAPGTPGPQGIAGQRGVV 961
Query: 136 AHGGHPHAHPHPAAAPPPPPPPQRLAASVSGSFTLMRDERAALASVGH--LYGPYGKE-- 191
G P P P ++ + SG ER +G L GP G+
Sbjct: 962 GLPGQRGERGFPGLPGPSGEPGKQGPSGASG-------ERGPPGPMGPPGLAGPPGESGR 1014
Query: 192 LPAMGSPLSPLPNALPPALHGAPQPPPPPPPPPLAAYGPPGHL-----AGDK-LLPPAAF 245
A G+ SP + P A + P PP A G PG + +GD+ PA
Sbjct: 1015 EGAPGAEGSPGRDGSPGAKGDRGETGPAGPPGAPGAPGAPGPVGPAGKSGDRGETGPAGP 1074
Query: 246 EPHAALLGRAEDALARGLPGGGGGTGSGG----AGSGSAAGLLAPLGGLAAAGAHGPHGG 301
+G A +G G G TG G G +GL P G + G GP G
Sbjct: 1075 AGPVGPVGARGPAGPQGPRGDKGETGEQGDRGIKGHRGFSGLQGPPGPPGSPGEQGPSGA 1134
Query: 302 GGGPGGSGGGPSAGAAAEE 320
G G G SAGA ++
Sbjct: 1135 SGPAGPRGPPGSAGAPGKD 1153
Score = 50.1 bits (118), Expect = 5e-06
Identities = 81/308 (26%), Positives = 95/308 (30%), Gaps = 68/308 (22%)
Query: 36 RGLVAP-GRPGLVAGMASLLDGGGGGGGGGAGGAGGAGSAGGGADFRGELAGPLHPAMGM 94
RGL P G PG + G G G G G G G D GE P P
Sbjct: 187 RGLPGPPGAPGPQGFQGPPGEPGEPGASGPMGPRGPPGPPGKNGD-DGEAGKPGRPGER- 244
Query: 95 ACEAPGLGGTYTTLTPLQHLPPLAAVADKFHQHAAAAAVAGAHG-----------GHPHA 143
PG G + LP A + H + + GA G G P
Sbjct: 245 --GPPGPQGA-------RGLPGTAGLPG-MKGHRGFSGLDGAKGDAGPAGPKGEPGSPGE 294
Query: 144 HPHPAAAPPPPPPPQRLAASVSGSFTLMRDERAALASVGHLYGPYGKELPAMGSPLSPLP 203
+ P P P +R G ++ A A+ GP G PA G P P
Sbjct: 295 NGAPGQMGPRGLPGERGRPGAPGPAGARGNDGATGAA-----GPPGPTGPA-GPP--GFP 346
Query: 204 NALPPALHGAPQPP-----------PPPPPPPLAAYGPPGHLAGDKLLPPAAFEPHAALL 252
A+ PQ P P PP P A GP G+ D
Sbjct: 347 GAVGAKGEAGPQGPRGSEGPQGVRGEPGPPGPAGAAGPAGNPGAD--------------- 391
Query: 253 GRAEDALARGLPGGGGGTGSGG-AGSGSAAGLLAPLGGLAAAGAHGPHGGGGGPGGSGGG 311
G PG G G+ G AG+ G P G G GP G G PG G
Sbjct: 392 ---------GQPGAKGANGAPGIAGAPGFPGARGPSGPQGPGGPPGPKGNSGEPGAPGSK 442
Query: 312 PSAGAAAE 319
GA E
Sbjct: 443 GDTGAKGE 450
Score = 47.4 bits (111), Expect = 3e-05
Identities = 85/324 (26%), Positives = 98/324 (30%), Gaps = 53/324 (16%)
Query: 36 RGLVAP-GRPGLVAGMASLLDGGGGGGGGGAGGAGGAGSAG-----GGADFRGELAGPLH 89
RGL P G PG + G G G G G G G G A F G
Sbjct: 763 RGLTGPIGPPGPAGAPGDKGESGPSGPAGPTGARGAPGDRGEPGPPGPAGFAGPPGADGQ 822
Query: 90 PAMGMACEAPGLGGTYTTLTPLQHLPPLAAVADKFHQHAAAAAVAGAHGGHPHAHPHPAA 149
P A PG G P P + A A A G P A P A
Sbjct: 823 PG---AKGEPGDAGAKGDAGPPGPAGPAGPPGPIGNVGAPGAKGARGSAGPPGATGFPGA 879
Query: 150 AP---PP-------PPPPQRLAASVSGSFTLMRDERAALASVGHLYGPYGKELPA----- 194
A PP PP P A G R E G + GP G PA
Sbjct: 880 AGRVGPPGPSGNAGPPGPPGPAGKEGGKGP--RGETGPAGRPGEV-GPPGPPGPAGEKGS 936
Query: 195 ------MGSPLSPLPNALPP--ALHGAPQ-------PPPPPPPPPLAAYGPPGHLAGDKL 239
G+P +P P + + G P P P P GP G A +
Sbjct: 937 PGADGPAGAPGTPGPQGIAGQRGVVGLPGQRGERGFPGLPGPSGEPGKQGPSG--ASGER 994
Query: 240 LPPAAFEPHAALLGRAEDALARGLPGGGGGTGSGGAGSGSAAGLLAPLGGLAAAGAHGPH 299
PP P L G ++ G PG G G G+ G G GP
Sbjct: 995 GPPGPMGP-PGLAGPPGESGREGAPGAEGSPGRDGSPGAK--------GDRGETGPAGPP 1045
Query: 300 GGGGGPGGSGGGPSAGAAAEEINT 323
G G PG G AG + + T
Sbjct: 1046 GAPGAPGAPGPVGPAGKSGDRGET 1069
Score = 46.6 bits (109), Expect = 5e-05
Identities = 40/126 (31%), Positives = 48/126 (38%), Gaps = 16/126 (12%)
Query: 198 PLSPLPNALPPALHGAP-QPPPPPPPPPLAAYGPPGHLAGDKLLPPAAF------EPHAA 250
P P A PP G P QP P PP P GPPG G P ++ +
Sbjct: 119 PRGPRGPAGPPGRDGIPGQPGLPGPPGPPGPPGPPG--LGGNFAPQLSYGYDEKSTGGIS 176
Query: 251 LLGRAEDALARGLPGGGGGTG-------SGGAGSGSAAGLLAPLGGLAAAGAHGPHGGGG 303
+ G + RGLPG G G G G A+G + P G G +G G G
Sbjct: 177 VPGPMGPSGPRGLPGPPGAPGPQGFQGPPGEPGEPGASGPMGPRGPPGPPGKNGDDGEAG 236
Query: 304 GPGGSG 309
PG G
Sbjct: 237 KPGRPG 242
Score = 45.8 bits (107), Expect = 9e-05
Identities = 91/340 (26%), Positives = 107/340 (31%), Gaps = 80/340 (23%)
Query: 41 PGRPGLVAGMASLLDGGGGGGGGGAGGAGG--AGSAGGGADFRG----ELAGPLHPAMGM 94
PGR G + G L G G G G GG A G D + + GP+ P+
Sbjct: 129 PGRDG-IPGQPGLPGPPGPPGPPGPPGLGGNFAPQLSYGYDEKSTGGISVPGPMGPS--- 184
Query: 95 ACEAPGLGGTYTTLTPLQHLPPLAAVADKFHQHAAAAAVAGAHGGH-PHAHPHP------ 147
GL G PP A F GA G P P P
Sbjct: 185 --GPRGLPG-----------PPGAPGPQGFQGPPGEPGEPGASGPMGPRGPPGPPGKNGD 231
Query: 148 ---AAAPPPP----PPPQRLAASVSGSFTL--MRDERAALASVGHLYGPYGKELPA--MG 196
A P P PP + A + G+ L M+ R L G G PA G
Sbjct: 232 DGEAGKPGRPGERGPPGPQGARGLPGTAGLPGMKGHRG----FSGLDGAKGDAGPAGPKG 287
Query: 197 SPLSPLPNALP--------PALHGAPQPPPPP-------------PPPPLAAYGPPGHL- 234
P SP N P P G P P P PP P GPPG
Sbjct: 288 EPGSPGENGAPGQMGPRGLPGERGRPGAPGPAGARGNDGATGAAGPPGPTGPAGPPGFPG 347
Query: 235 -------AGDKLLPPAAFEPHAALLGRAEDALARGLPGGGGGTGS----GGAGSGSAAGL 283
AG + P E + G G G G G+ G G+ A G+
Sbjct: 348 AVGAKGEAGPQ--GPRGSEGPQGVRGEPGPPGPAGAAGPAGNPGADGQPGAKGANGAPGI 405
Query: 284 LAPLGGLAAAGAHGPHGGGGGPGGSGGGPSAGAAAEEINT 323
G A G GP G GG PG G GA + +T
Sbjct: 406 AGAPGFPGARGPSGPQGPGGPPGPKGNSGEPGAPGSKGDT 445
Score = 40.4 bits (93), Expect = 0.004
Identities = 86/314 (27%), Positives = 96/314 (30%), Gaps = 66/314 (21%)
Query: 19 AGELLSPGHARSAAAQHRGLVAPGRPGLVA--GMASLLDGGGGGGGGGAGGAGGAGSAGG 76
AGE SPG A A PG G+ G+ L G G G G G G
Sbjct: 931 AGEKGSPGADGPAGAPG----TPGPQGIAGQRGVVGLPGQRGERGFPGLPGPSGEPGKQG 986
Query: 77 GADFRGELA--GPLHPAMGMACEAPGLGGTYTTLTPLQHLPPLAAVADKFHQHAAAAAVA 134
+ GE GP+ P PGL G P + A A+ +
Sbjct: 987 PSGASGERGPPGPMGP--------PGLAGP-----PGESGREGAPGAEGSPGRDGSPGAK 1033
Query: 135 GAHGGHPHAHPHPAAAPPPPPPPQRLAASVSGSFTLMRDERAALASVGHLYGPYGKELPA 194
G G A P A P P P A SG R E G + GP G PA
Sbjct: 1034 GDRGETGPAGPPGAPGAPGAPGPVGPAGK-SGD----RGETGPAGPAGPV-GPVGARGPA 1087
Query: 195 MGSPLSPLPNALPPALHG-----------APQPPPPPPPPPLAAYGPPGHLAGDKLLPPA 243
P P + G Q PP PP G PG PA
Sbjct: 1088 --GPQGPRGDKGETGEQGDRGIKGHRGFSGLQGPPGPP-------GSPGEQGPSGASGPA 1138
Query: 244 AFEPHAALLGRAEDALARGLPGGGGGTGSGGAGSGSAAGLLAPLGGLAAAGAHGPHGGGG 303
RG PG G G G G + P G G GP G G
Sbjct: 1139 G---------------PRGPPGSAGAPGKDGLNG--LPGPIGPPGPRGRTGDAGPVGPPG 1181
Query: 304 --GPGGSGGGPSAG 315
GP G G PSAG
Sbjct: 1182 PPGPPGPPGPPSAG 1195
>gi|153792074 proline rich 12 [Homo sapiens]
Length = 2036
Score = 65.9 bits (159), Expect = 8e-11
Identities = 74/238 (31%), Positives = 86/238 (36%), Gaps = 33/238 (13%)
Query: 126 QHAAAAAVAGAHG-GHPHAHPHPAAAPPPPPPPQRLAASVSGSFTLMRDERAALA----S 180
+ A V G G G P+ P PPPPP+ L F L+ AA A S
Sbjct: 206 ERLAGGGVLGPAGLGPAQTPPYRPGPPDPPPPPRHLPT----QFNLLASSSAAAAAAEQS 261
Query: 181 VGHLYGPYGKELPAMGSPLSPLPNALPPALHGAPQPPPPPPPPPLAAYGPPGHLAGDKLL 240
LY + P P LP H PPPPP PP H L
Sbjct: 262 SPQLYN-FSGAAPGPPPPERALPRQDTVIKHYQRPASAQPPPPP-----PPAHALQHYLS 315
Query: 241 PPAAFEPHAALLGRAEDALARGLPGGGGGTGSGGAGSGSAAGLLAPLGGLAAAGAHGPHG 300
++ A L G P G G S SG+ AG G AAG G G
Sbjct: 316 CGGSYPSMGHRANLACSPLGGGEPSPGAGEPSKAGPSGATAGASGRATGPEAAGGGGAGG 375
Query: 301 GGGG-------PG---GSGG-GPSAGAAAEEINTKEVAQRITAELKRYSI--PQAIFA 345
GGGG PG G GG G +AG A T+ R TA K S+ P A +A
Sbjct: 376 GGGGYRPIIQSPGYKTGKGGYGAAAGGA-----TRPPPPRSTATPKCQSLGGPAAAYA 428
Score = 65.9 bits (159), Expect = 8e-11
Identities = 102/366 (27%), Positives = 126/366 (34%), Gaps = 74/366 (20%)
Query: 12 HSVAH--AQAGELLSPGHARSAAAQHRGLVAP----------GRPGLVAGMASLLDGGGG 59
H++ H + G S GH + A G P G G AG + G
Sbjct: 308 HALQHYLSCGGSYPSMGHRANLACSPLGGGEPSPGAGEPSKAGPSGATAGASGRATGPEA 367
Query: 60 GGGGGAGGAGGA-----------------GSAGGGADFR-----------GELAGPLHP- 90
GGGGAGG GG G+A GGA L GP
Sbjct: 368 AGGGGAGGGGGGYRPIIQSPGYKTGKGGYGAAAGGATRPPPPRSTATPKCQSLGGPAAAY 427
Query: 91 AMGMACEAPGLGG-TYTTLTPLQHLPPLAAVADKFHQHAAAAAVAGAHGGHPHAHPHPAA 149
A G A A G GG Y+ P L P A A + A ++ G P P P +
Sbjct: 428 ATGKASGAGGAGGQAYSPGQPQGLLGPQAYGQGFGGGQAQDLSKAPSYSGGP---PQPPS 484
Query: 150 APPPPPPPQRLAASVSGSFTLMRDERAALASVGHLYGPYGKELPAMGSPLSPLPNALPPA 209
PPPP LA S S ++ G LYG G+ P + LP A P
Sbjct: 485 GPPPP----GLATCQSYSPDQLQ---------GQLYGVQGEPYPGPAAHSQGLPTASPSL 531
Query: 210 LHGAPQPPPPPPPPPLAAYGPPGHLAGDKLLPPAAFEPHAALLGRAEDALARGLPGGGGG 269
+ P +GP G + P P + A G P G G
Sbjct: 532 SYSTGHSPALSGHG--GGWGPSSLGGGGEASPSHIIRP-------LQSPPATGRPPGVGS 582
Query: 270 TGSGGAGSGS---AAGLLAPLG-GLAAAGAHGPHGGGGGP---GGSGGGPSAGAAAEEIN 322
G+ G S +A LAP G G AAGA G G G G G GG P+ EE
Sbjct: 583 PGAPGKYLSSVLASAPFLAPPGAGSYAAGAGGYKGKGDGSELLAGPGGPPAERTEDEEFL 642
Query: 323 TKEVAQ 328
+ + Q
Sbjct: 643 IQHLLQ 648
Score = 59.7 bits (143), Expect = 6e-09
Identities = 99/367 (26%), Positives = 119/367 (32%), Gaps = 102/367 (27%)
Query: 24 SPGHARSAAAQHRGLVAPGRPGLVAGMASLLDGGGGGGGGG----------AGGAGGAGS 73
SPG + A G A G G G + GG GGGGGG G GG G+
Sbjct: 340 SPGAGEPSKAGPSGATA-GASGRATGPEAAGGGGAGGGGGGYRPIIQSPGYKTGKGGYGA 398
Query: 74 AGGGADFRG-----------ELAGPLHP-AMGMACEAPGLGG-TYTTLTPLQHLPPLAAV 120
A GGA L GP A G A A G GG Y+ P L P A
Sbjct: 399 AAGGATRPPPPRSTATPKCQSLGGPAAAYATGKASGAGGAGGQAYSPGQPQGLLGPQAYG 458
Query: 121 ADKFHQHAAAAAVAGAHGGHPHAHPHPAAAPPPPPPPQRLAASVSGSFTLMRDERAALAS 180
A + A ++ G P P P + PPPP LA S S ++
Sbjct: 459 QGFGGGQAQDLSKAPSYSGGP---PQPPSGPPPPG----LATCQSYSPDQLQ-------- 503
Query: 181 VGHLYGPYGKELPAMGSPLSPLPNALP---------PALHG------------------- 212
G LYG G+ P + LP A P PAL G
Sbjct: 504 -GQLYGVQGEPYPGPAAHSQGLPTASPSLSYSTGHSPALSGHGGGWGPSSLGGGGEASPS 562
Query: 213 -----APQPPPPPPPPPLAAYGPPGHLAGDKLLPPAAFEPHAALLGRAEDALARGLPGGG 267
PP PP + + G PG L P A + A A G G G
Sbjct: 563 HIIRPLQSPPATGRPPGVGSPGAPGKYLSSVLASAPFLAPPGA---GSYAAGAGGYKGKG 619
Query: 268 GGT----GSGGAGS----------------------GSAAGLLAPLGGLAAAGAHGPHGG 301
G+ G GG + A GL+ G A+ G GG
Sbjct: 620 DGSELLAGPGGPPAERTEDEEFLIQHLLQAPSPPRTSGADGLVGEDGAADASKGLGGSGG 679
Query: 302 GGGPGGS 308
GGP G+
Sbjct: 680 AGGPPGT 686
Score = 53.1 bits (126), Expect = 6e-07
Identities = 96/363 (26%), Positives = 122/363 (33%), Gaps = 102/363 (28%)
Query: 7 SLGGLHSVAHAQAGELLSPGHARSAAAQHRGLVAPGRPG-----LVAGMASLLDGGGGGG 61
SLGG A ++ P + A + G+ +PG PG ++A L G G
Sbjct: 552 SLGG---GGEASPSHIIRPLQSPPATGRPPGVGSPGAPGKYLSSVLASAPFLAPPGAGSY 608
Query: 62 GGGAGGAGGAGSA-------GGGADFRGE---------LAGPLHPAM----------GMA 95
GAGG G G GG R E L P P G A
Sbjct: 609 AAGAGGYKGKGDGSELLAGPGGPPAERTEDEEFLIQHLLQAPSPPRTSGADGLVGEDGAA 668
Query: 96 CEAPGLGGTYTTLTP-------------LQHLPPLAAVADKFHQHAAAAAVAGA------ 136
+ GLGG+ P HL + + + A AA G
Sbjct: 669 DASKGLGGSGGAGGPPGTPYELAKEDPQRYHLQSVIRTSASLDEGATAALELGLGRLKEK 728
Query: 137 -----HGG-----------HPHAHPHPAAA----PPPPPPPQRLAASVSGSFTLMRDERA 176
GG H A A PPPPPP + + L+
Sbjct: 729 KKGPERGGETPEGLATSVVHYGAGAKELGAFLQKSPPPPPPTAQSTQPTPHGLLLEAGGP 788
Query: 177 ALASVGHLYGPYGKELPAMGSPL-SPLPNALPPALH--------GAPQPPPPPPPPP--- 224
L V L P + LP++ S SP P+A +H GAPQPPPPPPPPP
Sbjct: 789 DLPLV--LPPPPPQLLPSVLSHAPSPSPSASKVGVHLLEPATRDGAPQPPPPPPPPPPPM 846
Query: 225 -------LAAYGPPGHLAGDKLLPPAAFEPHAA---LLGRAEDALARGLPGGGGGTGSGG 274
L ++G +L P + +P A LLG E LP G TG G
Sbjct: 847 PLQLEAHLRSHGLEPAAPSPRLRPEESLDPPGAMQELLGALEP-----LPPAPGDTGVGP 901
Query: 275 AGS 277
S
Sbjct: 902 PNS 904
Score = 47.4 bits (111), Expect = 3e-05
Identities = 32/91 (35%), Positives = 34/91 (37%), Gaps = 24/91 (26%)
Query: 141 PHAHPHPAAAPPPPPPPQRLAASVSGSFTLMRDERAALASVGHLYGPYGKELPAMGSPLS 200
P P P PPPPPPP + AL S L P P
Sbjct: 1461 PPPAPTPQPQPPPPPPPPQ----------------PALPSPPPLVAP-----TPSSPPPP 1499
Query: 201 PLPNALPPALHGAPQPPPPPPPPPLAAYGPP 231
PLP PPA+ P PPPPPPP PP
Sbjct: 1500 PLPPPPPPAM---PSPPPPPPPAAAPLAAPP 1527
Score = 45.8 bits (107), Expect = 9e-05
Identities = 53/181 (29%), Positives = 67/181 (37%), Gaps = 27/181 (14%)
Query: 67 GAGGAGSAGGGADFRGELAGPLHPAMGMACEAPGLGGTYTTLTPLQHLPPLAA-----VA 121
GA G G A A+ G +G+ C +P L+ LP ++ VA
Sbjct: 1339 GAFGLGGALEAAESEG---------LGLGCPSPCKRLDEELKRNLETLPSFSSDEEDSVA 1389
Query: 122 DKFHQHAAAAAVAGAHGGHPHAHPHPAAAPPPPPPPQRLAASVSGSFTLMRDERAALASV 181
+ ++ A P A P + P PP AA+V G L L S
Sbjct: 1390 KNRDLQESISSAISALDDPPLAGPKDTSTPDGPPLAP--AAAVPGPPPL-----PGLPSA 1442
Query: 182 GHLYGPYGKELPAMGSPLSPLPNALPPALHGAPQPPPPPPPPPLAAYGPPGHLAGDKLLP 241
P E P + P P PPA PQPPPPPPPP A PP +A P
Sbjct: 1443 NSNGTP---EPPLLEEKPPPTP---PPAPTPQPQPPPPPPPPQPALPSPPPLVAPTPSSP 1496
Query: 242 P 242
P
Sbjct: 1497 P 1497
Score = 44.7 bits (104), Expect = 2e-04
Identities = 35/107 (32%), Positives = 41/107 (38%), Gaps = 10/107 (9%)
Query: 147 PAAAPPPPPPPQRLAASVSGSFT---LMRDERAALASVGHLYGPYGKELPAMGSPLSPLP 203
PAAA P PPP L ++ S L+ ++ P P P P P
Sbjct: 1426 PAAAVPGPPPLPGLPSANSNGTPEPPLLEEKPPPTPPPAPTPQPQPPPPPPPPQPALPSP 1485
Query: 204 NALPPALHGAPQPPPPPPPPPLAAYGPPGHLAGDKLLPPAAFEPHAA 250
L +P PPP PPPPP A PP PP A P AA
Sbjct: 1486 PPLVAPTPSSPPPPPLPPPPPPAMPSPPPP-------PPPAAAPLAA 1525
Score = 42.7 bits (99), Expect = 8e-04
Identities = 38/110 (34%), Positives = 39/110 (35%), Gaps = 44/110 (40%)
Query: 145 PHPAAAPPPPPPPQRLAASVSGSFTLMRDERAALASVGHLYGPY--------GKELPAMG 196
P A PPP PP YGPY G E P +G
Sbjct: 974 PKAGAGPPPGPPAY------------------------DPYGPYCPGRASGAGPETPGLG 1009
Query: 197 -SPLSP--LP---NALPPAL------HGAPQPPPPPPPPPLAAYGPPGHL 234
P P LP NA P L AP PPPPPPPPP A P G L
Sbjct: 1010 LDPNKPPELPSTVNAEPLGLIQSGPHQAAPPPPPPPPPPPAPASEPKGGL 1059
Score = 38.1 bits (87), Expect = 0.018
Identities = 67/257 (26%), Positives = 85/257 (33%), Gaps = 55/257 (21%)
Query: 110 PLQHLPPLAAVADKFHQHAAA----AAVAGAHGGHPHAH---PHPAAAPPPPPPPQRLAA 162
PL PP + HA + A+ G H P P P PPPPPPP L
Sbjct: 791 PLVLPPPPPQLLPSVLSHAPSPSPSASKVGVHLLEPATRDGAPQPPPPPPPPPPPMPLQL 850
Query: 163 SVSGSFTLMRDERAALASVGHLYGPYGKELPAMGSPLSPLPNALPPA----LHGAPQPPP 218
HL +G E A L P + PP L GA +P P
Sbjct: 851 E------------------AHLRS-HGLEPAAPSPRLRPEESLDPPGAMQELLGALEPLP 891
Query: 219 PPP------PP------PLAAYGPPG--HLAGDKLLPPAAFEPHAALLGRAEDAL---AR 261
P P PP P AY P + +P + +LL E +
Sbjct: 892 PAPGDTGVGPPNSEGKDPAGAYRSPSPQGTKAPRFVPLTSICFPDSLLQDEERSFFPTME 951
Query: 262 GLPGGGGGTGSGGAG----SGSAAGLLAPLGGLAAAGAHGPHGGGGGPGGSGGGP-SAGA 316
+ GGG G AG G P G A +GP+ G SG GP + G
Sbjct: 952 EMFGGGAADDYGKAGPPEDEGDPKAGAGPPPGPPAYDPYGPYCPG---RASGAGPETPGL 1008
Query: 317 AAEEINTKEVAQRITAE 333
+ E+ + AE
Sbjct: 1009 GLDPNKPPELPSTVNAE 1025
Score = 34.3 bits (77), Expect = 0.27
Identities = 37/112 (33%), Positives = 42/112 (37%), Gaps = 32/112 (28%)
Query: 58 GGGGGGGAGGAG----------GAGSAGGGADFRGELAGPLHP--AMGMACEAPGLGGTY 105
GGG G AG GAG G + + GP P A G E PGLG
Sbjct: 955 GGGAADDYGKAGPPEDEGDPKAGAGPPPGPPAY--DPYGPYCPGRASGAGPETPGLG--- 1009
Query: 106 TTLTPLQHLPPLAAVADKFHQHAAAAAVAGAHGGHPHAHPHPAAAPPPPPPP 157
L P + PP + V G + PH AA PPPPPPP
Sbjct: 1010 --LDP--NKPP-----------ELPSTVNAEPLGLIQSGPHQAAPPPPPPPP 1046
Score = 30.8 bits (68), Expect = 3.0
Identities = 19/43 (44%), Positives = 24/43 (55%), Gaps = 7/43 (16%)
Query: 198 PLSPLPNALPPALHGA---PQPPPP---PPPPPLAAYGPPGHL 234
PLSP P ++PP++ PQPP P PPP A+G G L
Sbjct: 1306 PLSP-PKSVPPSVPARGLQPQPPATPAVPHPPPSGAFGLGGAL 1347
>gi|126090909 engrailed homeobox 1 [Homo sapiens]
Length = 392
Score = 65.5 bits (158), Expect = 1e-10
Identities = 108/428 (25%), Positives = 143/428 (33%), Gaps = 127/428 (29%)
Query: 64 GAGGAGGAGSAGGGADFRGELAGPLHPAMGMACEAPGLGGTYTTLTPLQHLPPLAAVADK 123
GA G+ G+GS G + A P PA AP L PPLA
Sbjct: 34 GASGSSGSGSDGDSVPVSPQPAPPSPPA------APCL-------------PPLAH---- 70
Query: 124 FHQHAAAAAVAGAHGGHPHAHPHPAAAPPPPPPPQRLAASVSGSFTLMRDERAALASVGH 183
HPH PHP PPPPPQ H
Sbjct: 71 ----------------HPHLPPHP-----PPPPPQ------------------------H 85
Query: 184 LYGPYGKELPAMGSPLSP---LPNALPPALHGAPQPPPPPPPPPLAAYGPPGH------- 233
L P + PA + + N L P + PPP AA G G
Sbjct: 86 LAAPAHQPQPAAQLHRTTNFFIDNILRPDFGCKKEQPPPQLLVAAAARGGAGGGGRVERD 145
Query: 234 ----LAG-DKLLPPAAFEPHAALLGRAEDALARGLPGG------GGGTGSGGAGSGSAAG 282
AG D + P P AA L A DA G P G G G G + +AA
Sbjct: 146 RGQTAAGRDPVHPLGTRAPGAASLLCAPDANC-GPPDGSQPAAAGAGASKAGNPAAAAAA 204
Query: 283 LLAPLGGLAAAGAHGPHG-GGGGPGGSGGGPSA-GAAAEEINTKEVAQRITAELKRYSIP 340
A + AAA A P GGGG GG G P A G E + +A
Sbjct: 205 AAAAVAAAAAAAAAKPSDTGGGGSGGGAGSPGAQGTKYPEHGNPAILLMGSA-------- 256
Query: 341 QAIFAQRILCRSQGTLSDLLRNPKPWSKLKSGRETFRRMWKWLQEPEFQRMSALRLAACK 400
N P K S + W + + S R K
Sbjct: 257 ---------------------NGGPVVKTDSQQPLVWPAWVYCTRYSDRPSSGPRTRKLK 295
Query: 401 RKEQEQQKERALQPKKQRLVFTDLQRRTLIAIFKENKRPSKEMQVTISQQLGLELNTVSN 460
+K+ E++ K+ R FT Q + L A F+ N+ +++ + T++Q+L L + +
Sbjct: 296 KKKNEKED------KRPRTAFTAEQLQRLKAEFQANRYITEQRRQTLAQELSLNESQIKI 349
Query: 461 FFMNARRR 468
+F N R +
Sbjct: 350 WFQNKRAK 357
Score = 34.7 bits (78), Expect = 0.20
Identities = 24/65 (36%), Positives = 29/65 (44%), Gaps = 6/65 (9%)
Query: 9 GGLHSVAHAQAGELLSPGHARSAAAQHRGLVAPGRPGLVAGMASLLDGGGGGGGGGAGGA 68
G + A A A + +P A +AAA A A A D GGGG GGGAG
Sbjct: 182 GSQPAAAGAGASKAGNPAAAAAAAAAAVAAAA------AAAAAKPSDTGGGGSGGGAGSP 235
Query: 69 GGAGS 73
G G+
Sbjct: 236 GAQGT 240
>gi|22538470 eomesodermin [Homo sapiens]
Length = 686
Score = 65.5 bits (158), Expect = 1e-10
Identities = 84/268 (31%), Positives = 100/268 (37%), Gaps = 42/268 (15%)
Query: 54 LDGGGGGGGGGAGGAGGAGSAGGGADF---RGELAGPLHPAMGMACEA-PGLGGTYTTLT 109
L+ GG GG AG A + D + +G L +CEA G +
Sbjct: 22 LESARGGSGGSAGHLPSAAPSPQKLDLDKASKKFSGSL------SCEAVSGEPAAASAGA 75
Query: 110 PLQHLPPLAAVADKFHQHAAAAAVA------GAHGGHPHAHPHPAAAPPPPPPPQRLAAS 163
P L A D F A+AAAVA G G P+AA AA+
Sbjct: 76 PAAMLSDTDA-GDAF---ASAAAVAKPGPPDGRKGSPCGEEELPSAAAAAAAAAAAAAAT 131
Query: 164 VSGSFTLMRDERAALASVGHLYGPYGKELPAMGSPLSPLPNALPPALHGAPQPPPPPPPP 223
S + ER L S G P G EL A P +L P A P P P
Sbjct: 132 ARYSMDSLSSERYYLQSPG----PQGSELAA--------PCSLFPYQAAAGAPHGPVYPA 179
Query: 224 PLAAYGPPGHLAGDKLLPPAAFEPHAALLGRAEDALARGLPGGGGGTGSGGAGSGS---- 279
P A P G +LPP F GRA+ G G GG+ GG G G+
Sbjct: 180 PNGARYPYG-----SMLPPGGFPAAVCPPGRAQFGPGAGAGSGAGGSSGGGGGPGTYQYS 234
Query: 280 -AAGLLAPLGGLAAAGAHGPHGGGGGPG 306
A L P G AAAG+ G GG G PG
Sbjct: 235 QGAPLYGPYPGAAAAGSCGGLGGLGVPG 262
Score = 35.0 bits (79), Expect = 0.16
Identities = 23/65 (35%), Positives = 27/65 (41%), Gaps = 5/65 (7%)
Query: 42 GRPGLVAGMASLLDGGGGGGGGGAGGAGGAGSAGGGADFRGELAGPL---HPAMGMACEA 98
G P V G G G G GAGG+ G G GG ++ PL +P A
Sbjct: 195 GFPAAVCPPGRAQFGPGAGAGSGAGGSSGGG--GGPGTYQYSQGAPLYGPYPGAAAAGSC 252
Query: 99 PGLGG 103
GLGG
Sbjct: 253 GGLGG 257
Score = 31.6 bits (70), Expect = 1.7
Identities = 27/76 (35%), Positives = 30/76 (39%), Gaps = 28/76 (36%)
Query: 20 GELLSPGHARSAAAQHRGLVAPGR----PGLVAGMASLLDGGGGGGGGGAG--------- 66
G +L PG +A PGR PG AG + GG GGGGG G
Sbjct: 188 GSMLPPGGFPAAVCP------PGRAQFGPGAGAGSGA---GGSSGGGGGPGTYQYSQGAP 238
Query: 67 ------GAGGAGSAGG 76
GA AGS GG
Sbjct: 239 LYGPYPGAAAAGSCGG 254
Score = 30.8 bits (68), Expect = 3.0
Identities = 41/148 (27%), Positives = 54/148 (36%), Gaps = 16/148 (10%)
Query: 223 PPLAAYGPPGHLAGDKLLPPAAFEPHAALLGRAEDALARGLPGGGGGTGSGGAGSGSAAG 282
P +A G G AG LP AA P L +A + L A +G+ A
Sbjct: 21 PLESARGGSGGSAGH--LPSAAPSPQKLDLDKASKKFSGSLSCEAVSGEPAAASAGAPAA 78
Query: 283 LLAPL-------GGLAAAGAHGPHGGGGGPGGSGGGPSAGAAAEEINTKEVAQRITAELK 335
+L+ A A P G G P G PSA AAA A A
Sbjct: 79 MLSDTDAGDAFASAAAVAKPGPPDGRKGSPCGEEELPSAAAAA------AAAAAAAAATA 132
Query: 336 RYSIPQAIFAQRILCRSQGTLSDLLRNP 363
RYS+ ++ ++R +S G L P
Sbjct: 133 RYSM-DSLSSERYYLQSPGPQGSELAAP 159
>gi|111118976 collagen, type II, alpha 1 isoform 1 precursor [Homo
sapiens]
Length = 1487
Score = 65.1 bits (157), Expect = 1e-10
Identities = 80/275 (29%), Positives = 93/275 (33%), Gaps = 42/275 (15%)
Query: 65 AGGAGGAGSAGGGADFRGELAGPLHPAMGMACEAPGLGGTYTTLTPLQHLPPLAAVADKF 124
+G G G G D + ++ GP P PG G P P DK
Sbjct: 97 SGQPGPKGQKGEPGDIK-DIVGPKGP--------PGPQG------PAGEQGPRGDRGDKG 141
Query: 125 HQHAAAAAVAGAHGGHPHAHPHPAAAPPPPPPPQ---RLAASVSGSFTLMRDERAALASV 181
+ A G P +P P P PP PP AA ++G F DE+A A +
Sbjct: 142 EKGAPGPRGRDGEPGTP-GNPGPPGPPGPPGPPGLGGNFAAQMAGGF----DEKAGGAQL 196
Query: 182 GHLYGPYGKELPAMGSPLSPLPNALPPALHGAPQPPPPP----PPPPLAAYGPPGHLAGD 237
G + GP G P P P P G P P P P P GPPG D
Sbjct: 197 GVMQGPMGPMGPR--GPPGPAGAPGPQGFQGNPGEPGEPGVSGPMGPRGPPGPPGKPGDD 254
Query: 238 KLLPPAAFEPHAALLGRAEDALARGLPGGGGGTG----------SGGAGSGSAAGLLAPL 287
A A G ARG PG G G G G A G+
Sbjct: 255 G---EAGKPGKAGERGPPGPQGARGFPGTPGLPGVKGHRGYPGLDGAKGEAGAPGVKGES 311
Query: 288 GGLAAAGAHGPHGGGGGPGGSGGGPSAGAAAEEIN 322
G G+ GP G G PG G AGAA N
Sbjct: 312 GSPGENGSPGPMGPRGLPGERGRTGPAGAAGARGN 346
Score = 55.1 bits (131), Expect = 1e-07
Identities = 91/343 (26%), Positives = 108/343 (31%), Gaps = 67/343 (19%)
Query: 15 AHAQAGELLSPGHARSAAAQHRGLVAPGRPGLVAGMASLLDGGGGGGGGGAGGAGGAGSA 74
A+ + GE+ PG A SA A RG APG G G G G G G G A
Sbjct: 799 ANGEKGEVGPPGPAGSAGA--RG--APGERGETGPPGPAGFAGPPGADGQPGAKGEQGEA 854
Query: 75 GGGADFRGELAGPLHPAMGMACEAPGLGGTYTTLTPLQHLPPLAAVADKFHQHAAAAAVA 134
G D GP P+ APG G P P A + A A
Sbjct: 855 GQKGD--AGAPGPQGPS-----GAPGPQG------PTGVTGPKGARGAQGPPGATGFPGA 901
Query: 135 GAHGGHPHAHPHPAAAPPPPPPPQRLAASVSGSFTLMRDERAALASVGHLYGPYGKE--- 191
G P ++ +P PP PP P RA + GP G++
Sbjct: 902 AGRVGPPGSNGNPG--PPGPPGPSGKDGPKGARGDSGPPGRAGEPGLQGPAGPPGEKGEP 959
Query: 192 -------------------------LPAM----GSPLSPLPNALP-----PALHGAPQPP 217
LP G P P P+ P P G PP
Sbjct: 960 GDDGPSGAEGPPGPQGLAGQRGIVGLPGQRGERGFPGLPGPSGEPGKQGAPGASGDRGPP 1019
Query: 218 PPPPPPPLAA-YGPPGHLAGDKLLPPAAFEPHAALLGRAEDALARGLPGGGGGTGS---- 272
P PP L G PG P + A + G + A G PG G GS
Sbjct: 1020 GPVGPPGLTGPAGEPGREGSPGADGPPGRDGAAGVKGDRGETGAVGAPGAPGPPGSPGPA 1079
Query: 273 ------GGAGSGSAAGLLAPLGGLAAAGAHGPHGGGGGPGGSG 309
G G A G + P G A G GP G G G +G
Sbjct: 1080 GPTGKQGDRGEAGAQGPMGPSGPAGARGIQGPQGPRGDKGEAG 1122
Score = 53.9 bits (128), Expect = 3e-07
Identities = 87/304 (28%), Positives = 100/304 (32%), Gaps = 48/304 (15%)
Query: 41 PGRPGLVAGMASLLDGGGGGGGGGAGGAGGAGSAG-----GGADFRGELAGPLHPAMGMA 95
PG PGL G G G G +G G G G RG+ P A
Sbjct: 551 PGEPGLPGARGLTGRPGDAGPQGKVGPSGAPGEDGRPGPPGPQGARGQPGVMGFPGPKGA 610
Query: 96 CEAPGLGGTYTTLTPLQHLPPLAAVADKFHQHAAA-----AAVAGAHG--GHPHAHPHPA 148
PG G L P L + K + AA A AG G G P
Sbjct: 611 NGEPGKAGE----KGLPGAPGLRGLPGKDGETGAAGPPGPAGPAGERGEQGAPGPSGFQG 666
Query: 149 AAPPPPPPPQRLAASVSGSFTLMRDERAALASVGHLYGPYGKELPAMGSPLSPLPNAL-- 206
PP PP + G A L GP G E G SP L
Sbjct: 667 LPGPPGPPGEGGKPGDQGV--------PGEAGAPGLVGPRG-ERGFPGERGSPGAQGLQG 717
Query: 207 PPALHGAPQPPPPP----PPPPLAAYGPPG--HLAGDKLLPPAAFEPHAALLGRAEDALA 260
P L G P P P P A GPPG + G++ G A A
Sbjct: 718 PRGLPGTPGTDGPKGASGPAGPPGAQGPPGLQGMPGER--------------GAAGIAGP 763
Query: 261 RGLPGGGGGTGSGGA-GSGSAAGLLAPLGGLAAAGAHGPHGGGGGPGGSGGGPSAGAAAE 319
+G G G G GA G GL P+G AGA+G G G PG +G + GA E
Sbjct: 764 KGDRGDVGEKGPEGAPGKDGGRGLTGPIGPPGPAGANGEKGEVGPPGPAGSAGARGAPGE 823
Query: 320 EINT 323
T
Sbjct: 824 RGET 827
Score = 50.8 bits (120), Expect = 3e-06
Identities = 87/309 (28%), Positives = 97/309 (31%), Gaps = 26/309 (8%)
Query: 20 GELLSPGHARSAAAQ-HRGLVAPGRPGLVAGMASLLDGGGGGGGGGAGGAGGAGSAGGGA 78
GE G A +A A+ + G P P G A G G G G GA G
Sbjct: 330 GERGRTGPAGAAGARGNDGQPGPAGPPGPVGPAGGPGFPGAPGAKGEAGPTGARGPEGAQ 389
Query: 79 DFRGELAGPLHPAMGMACEAPGLGGTYTTLTPLQHLPPLAAVADKFHQHAAAAAVAGAHG 138
RGE P P A PG G +P A A +AGA G
Sbjct: 390 GPRGEPGTPGSPGPAGASGNPGTDG----------IPGAKG-------SAGAPGIAGAPG 432
Query: 139 -GHPHAHPHPAAAPPPPPPPQRLAASVSGSFTLMRDERAALASVG--HLYGPYGKE--LP 193
P P P A P P + F + + G GP G+E
Sbjct: 433 FPGPRGPPGPQGATGPLGPKGQTGEPGIAGFKGEQGPKGEPGPAGPQGAPGPAGEEGKRG 492
Query: 194 AMGSPLSPLPNALPPALHGAPQPPPPPPPPPLAA-YGPPGHLAGDKLLPPAAFEPHAALL 252
A G P P PP GAP P LA G PG L P
Sbjct: 493 ARGEPGGVGPIG-PPGERGAPGNRGFPGQDGLAGPKGAPGERGPSGLAGPKGANGDPGRP 551
Query: 253 GRAEDALARGLPGGGGGTG-SGGAGSGSAAGLLAPLGGLAAAGAHGPHGGGGGPGGSGGG 311
G ARGL G G G G G A G G GA G G G PG G
Sbjct: 552 GEPGLPGARGLTGRPGDAGPQGKVGPSGAPGEDGRPGPPGPQGARGQPGVMGFPGPKGAN 611
Query: 312 PSAGAAAEE 320
G A E+
Sbjct: 612 GEPGKAGEK 620
Score = 47.4 bits (111), Expect = 3e-05
Identities = 78/285 (27%), Positives = 91/285 (31%), Gaps = 48/285 (16%)
Query: 41 PGRPGLVAGMASLLDGGGGGGGGGAGGAGGAGSAG-----GGADFRGELAGPLHPAMGMA 95
PG PG+ M G G G G AG G AG G RG P P +
Sbjct: 230 PGEPGVSGPMGPRGPPGPPGKPGDDGEAGKPGKAGERGPPGPQGARGFPGTPGLPGVKGH 289
Query: 96 CEAPGLGGTYTTLTPLQHLPPLAAVADKFHQHAAAAAVAGAHGGHPHAHPHPAAAPPPPP 155
PGL G A A V G G P + P P
Sbjct: 290 RGYPGLDGA--------------------KGEAGAPGVKG-ESGSPGENGSPGPMGPRGL 328
Query: 156 PPQRLAASVSGSFTLMRDERAALASVGHLYGPYGKELPAMGSPLSPLPNALPPALHGAPQ 215
P +R R A G G+ PA P P+ A P GAP
Sbjct: 329 PGER--------------GRTGPAGAAGARGNDGQPGPA--GPPGPVGPAGGPGFPGAPG 372
Query: 216 PPPPPPPPPLAAYGPPGHLAGDKLLPPAAFEPHAALLGRAEDALARGLPGGGGGTGSGG- 274
P A GP G G + P P A G + + G+PG G G+ G
Sbjct: 373 AKGEAGPT--GARGPEG-AQGPRGEPGTPGSPGPA--GASGNPGTDGIPGAKGSAGAPGI 427
Query: 275 AGSGSAAGLLAPLGGLAAAGAHGPHGGGGGPGGSGGGPSAGAAAE 319
AG+ G P G A G GP G G PG +G G E
Sbjct: 428 AGAPGFPGPRGPPGPQGATGPLGPKGQTGEPGIAGFKGEQGPKGE 472
Score = 42.4 bits (98), Expect = 0.001
Identities = 83/283 (29%), Positives = 94/283 (33%), Gaps = 32/283 (11%)
Query: 42 GRPGLVAGMASLLDGGGGGGGGGAGGAGGAGSAGGGADFRGELAGPLHPAMGMACEA--P 99
G PGL G A G G G GA G G A RG + P G E P
Sbjct: 942 GEPGL-QGPAGPPGEKGEPGDDGPSGAEGPPGPQGLAGQRGIVGLP-----GQRGERGFP 995
Query: 100 GLGGTYTTLTPLQHLPPLAAVADKFHQHAAAAAVAGAHGGHPHAHPHPAAAPPPPPPPQR 159
GL G + P + P A D+ G P P A PP +
Sbjct: 996 GLPGP--SGEPGKQGAP-GASGDRGPPGPVGPPGLTGPAGEPGREGSPGA---DGPPGRD 1049
Query: 160 LAASVSGSFTLMRDERAALASVGHLYGPYGKELPAMGSPLSPLPNALPPALHGAPQPPPP 219
AA V G R E A+ + G GP P P P GA P P
Sbjct: 1050 GAAGVKGD----RGETGAVGAPG-APGP-----PGSPGPAGPTGKQGDRGEAGAQGPMGP 1099
Query: 220 PPPPPLAAYGPPGHLAGDKLLPPAAFEP-HAALLGRAEDALARGLPGGGGGTG----SGG 274
P P GDK A EP L G +GLPG G +G SG
Sbjct: 1100 SGPAGARGIQGPQGPRGDK---GEAGEPGERGLKGHRGFTGLQGLPGPPGPSGDQGASGP 1156
Query: 275 AGSGSAAGLLAPLGGLAAAGAHGPHGGGGGPGGSGGGPSAGAA 317
AG G P+G GA+G G G PG G G A
Sbjct: 1157 AGPSGPRGPPGPVGPSGKDGANGIPGPIGPPGPRGRSGETGPA 1199
Score = 42.0 bits (97), Expect = 0.001
Identities = 93/322 (28%), Positives = 108/322 (33%), Gaps = 62/322 (19%)
Query: 42 GRPGLVAGMASLLDGGGGGGGGGAGGAGGAGSAGGGADFRGE--LAGPLHPAMGMACEAP 99
G PG AG G GG G G G A G F G+ LAGP AP
Sbjct: 480 GAPG-PAGEEGKRGARGEPGGVGPIGPPGERGAPGNRGFPGQDGLAGPKG--------AP 530
Query: 100 GLGGTYTTLTPLQHLPPLAAVADKFHQHAAAAAVAGAHG-------GHPHAHPHPAAAP- 151
G G P P A D + GA G P P+ AP
Sbjct: 531 GERG------PSGLAGPKGANGDP--GRPGEPGLPGARGLTGRPGDAGPQGKVGPSGAPG 582
Query: 152 ----PPPPPPQ--RLAASVSGSFTLMRDERAALASVGH--------LYGPYGK--ELPAM 195
P PP PQ R V G F + G L G GK E A
Sbjct: 583 EDGRPGPPGPQGARGQPGVMG-FPGPKGANGEPGKAGEKGLPGAPGLRGLPGKDGETGAA 641
Query: 196 GSPLSPLPNALPPALHGAPQPPP----PPPPPPLAAYGPPGHLAGDKLLPPAAFEPHAAL 251
G P P A GAP P P PP P G PG D+ +P A P L
Sbjct: 642 GPP-GPAGPAGERGEQGAPGPSGFQGLPGPPGPPGEGGKPG----DQGVPGEAGAP--GL 694
Query: 252 LGRAEDALARGLPGGGGGTGSGGA----GSGSAAGLLAPLGGLAAAGAHGPHGGGGGPGG 307
+G + RG PG G G+ G G G P G AG G G G G
Sbjct: 695 VGPRGE---RGFPGERGSPGAQGLQGPRGLPGTPGTDGPKGASGPAGPPGAQGPPGLQGM 751
Query: 308 SGGGPSAGAAAEEINTKEVAQR 329
G +AG A + + +V ++
Sbjct: 752 PGERGAAGIAGPKGDRGDVGEK 773
>gi|21264565 AT rich interactive domain 1A isoform a [Homo sapiens]
Length = 2285
Score = 65.1 bits (157), Expect = 1e-10
Identities = 84/325 (25%), Positives = 106/325 (32%), Gaps = 61/325 (18%)
Query: 17 AQAGELLSPGHARSAAAQHRGLVAPGRPGLVAGMASLLDGGGGGGGGGAGGAGGAGSAGG 76
A A G ++AA Q A G P + L DG GGGG GGAG G G
Sbjct: 39 AAAAAAAERGEMKAAAGQESEGPAVGPPQPLG--KELQDGAESNGGGGGGGAGSGGGPGA 96
Query: 77 GADFRGEL--AGPLHPAMGMACEAPGLGGTYTTLTPLQHLPPLAAVADKFHQHAAAAAVA 134
D + AGP E PG GG
Sbjct: 97 EPDLKNSNGNAGPRPALNNNLTEPPGGGG------------------------------- 125
Query: 135 GAHGGHPHAHPHPAAAPPPPPP----------PQRLAASVSGSFTLMRDERAALASVGHL 184
G A PH AAA PPP P +AA+ + F + +
Sbjct: 126 GGSSDGVGAPPHSAAAALPPPAYGFGQPYGRSPSAVAAAAAAVFHQQHGGQQSPGLAALQ 185
Query: 185 YGPYGKELPAMGSPLSPLPNALPPALHGAPQPPP---PPPPPPLAAYGPPGHLAGDKLLP 241
G G P G + + P + + P PPP P A P G G
Sbjct: 186 SGGGGGLEPYAGPQQNSHDHGFPNHQYNSYYPNRSAYPPPAPAYALSSPRGGTPGSGAAA 245
Query: 242 PAAFEP---HAALLGRAEDALARGLPGGGGGTGSGGAGSGSAAGLLAPL------GGLAA 292
A +P +A + + A+ G GG G AG G+ P +A
Sbjct: 246 AAGSKPPPSSSASASSSSSSFAQQRFGAMGGGGPSAAGGGTPQPTATPTLNQLLTSPSSA 305
Query: 293 AGAHGPHGG--GGGP--GGSGGGPS 313
G G GG GGP GG+G GP+
Sbjct: 306 RGYQGYPGGDYSGGPQDGGAGKGPA 330
Score = 47.4 bits (111), Expect = 3e-05
Identities = 38/108 (35%), Positives = 40/108 (37%), Gaps = 18/108 (16%)
Query: 207 PPALHGAPQPPPPPPPPPLAAYGPPGHLAGDKLLPPAAFEPHAALLGRAEDALARGLPGG 266
P A PPPPPP A AG + AA E R E A
Sbjct: 7 PAAASSLGNPPPPPPSELKKAEQQQREEAGGEAAAAAAAE-------RGEMKAA------ 53
Query: 267 GGGTGSGGAGSGSAAGLLAPLGGLAAAGAHGPHGGGGGPGGSGGGPSA 314
+G G A G PLG GA GGGGG GSGGGP A
Sbjct: 54 -----AGQESEGPAVGPPQPLGKELQDGAESNGGGGGGGAGSGGGPGA 96
Score = 47.4 bits (111), Expect = 3e-05
Identities = 74/320 (23%), Positives = 96/320 (30%), Gaps = 31/320 (9%)
Query: 31 AAAQHRGLVAPGRPG-LVAGMASLLDGGGGGGGGGAGGAGGAGSAGGGADFRGELAGPLH 89
AAA G P P L + GG A G A G + G GP
Sbjct: 8 AAASSLGNPPPPPPSELKKAEQQQREEAGGEAAAAAAAERGEMKAAAGQESEGPAVGPPQ 67
Query: 90 PA-----------MGMACEAPGLGGTYTTLTPLQHLPPLAAVADKFHQHAAAAAVAGAHG 138
P G G GG L++ A + + G G
Sbjct: 68 PLGKELQDGAESNGGGGGGGAGSGGGPGAEPDLKNSNGNAGPRPALNNNLTEPPGGGGGG 127
Query: 139 GHP--HAHPHPAAAPPPPP----------PPQRLAASVSGSFTLMRDERAALASVGHLYG 186
A PH AAA PPP P +AA+ + F + + G
Sbjct: 128 SSDGVGAPPHSAAAALPPPAYGFGQPYGRSPSAVAAAAAAVFHQQHGGQQSPGLAALQSG 187
Query: 187 PYGKELPAMGSPLSPLPNALPPALHGAPQP---PPPPPPPPLAAYGPPGHLAGDKLLPPA 243
G P G + + P + + P PPP P A P G G A
Sbjct: 188 GGGGLEPYAGPQQNSHDHGFPNHQYNSYYPNRSAYPPPAPAYALSSPRGGTPGSGAAAAA 247
Query: 244 AFEP---HAALLGRAEDALARGLPGGGGGTGSGGAGSGSAAGLLAPLGGLAAAGAHGPHG 300
+P +A + + A+ G GG G AG G+ P G
Sbjct: 248 GSKPPPSSSASASSSSSSFAQQRFGAMGGGGPSAAGGGTPQPTATPTLNQLLTSPSSARG 307
Query: 301 GGGGPGGS-GGGPSAGAAAE 319
G PGG GGP G A +
Sbjct: 308 YQGYPGGDYSGGPQDGGAGK 327
Score = 42.4 bits (98), Expect = 0.001
Identities = 65/211 (30%), Positives = 74/211 (35%), Gaps = 62/211 (29%)
Query: 147 PAAAP----PPPPPPQRLAASVSGSFTLMRDERAALASV--GHLYGPYGKEL--PAMGSP 198
PAAA PPPPPP L + E AA A+ G + G+E PA+G P
Sbjct: 7 PAAASSLGNPPPPPPSELKKAEQQQREEAGGEAAAAAAAERGEMKAAAGQESEGPAVGPP 66
Query: 199 LSPLPNALPPALH--------GAPQPPPPPPPPPLA-AYGPPGHLAGDKLLPPAAFEPHA 249
PL L GA P P L + G G P
Sbjct: 67 -QPLGKELQDGAESNGGGGGGGAGSGGGPGAEPDLKNSNGNAG--------------PRP 111
Query: 250 ALLGRAEDALARGLPGGGGGTGSGGAGS--GSAAGLLAP---------------LGGLAA 292
AL + PGGGGG S G G+ SAA L P + AA
Sbjct: 112 ALNNNLTEP-----PGGGGGGSSDGVGAPPHSAAAALPPPAYGFGQPYGRSPSAVAAAAA 166
Query: 293 AGAHGPHGGGGGPG------GSGGG--PSAG 315
A H HGG PG G GGG P AG
Sbjct: 167 AVFHQQHGGQQSPGLAALQSGGGGGLEPYAG 197
Score = 31.2 bits (69), Expect = 2.3
Identities = 54/213 (25%), Positives = 69/213 (32%), Gaps = 53/213 (24%)
Query: 55 DGGGGGGG--------GGAGGAGGAGSAGGGADFRGELAGPLHPAMGMACEAPGLGGTYT 106
DGG G G G A A A +A GGA R A P+ P + G GG
Sbjct: 322 DGGAGKGPADMASQCWGAAAAAAAAAAASGGAQQRSHHA-PMSPG------SSGGGGQPL 374
Query: 107 TLTPLQHLPPLAAVADKFHQHAAA----AAVAGAHGGHPHAHPHPAAAPPPPPPPQRLAA 162
TP Q P+ + Q + G G H +P P PQR
Sbjct: 375 ARTP-QPSSPMDQMGKMRPQPYGGTNPYSQQQGPPSGPQQGHGYPGQ-PYGSQTPQRYPM 432
Query: 163 SVSGSFTLMRDERAALASVGHLYG----PYGKELPA--------------------MGSP 198
++ G RA A G Y PYG++ P+ P
Sbjct: 433 TMQG--------RAQSAMGGLSYTQQIPPYGQQGPSGYGQQGQTPYYNQQSPHPQQQQPP 484
Query: 199 LSPLPNALPPALHGAPQPPPPPPPPPLAAYGPP 231
S P + P + Q P PP L + PP
Sbjct: 485 YSQQPPSQTPHAQPSYQQQPQSQPPQLQSSQPP 517
Score = 29.3 bits (64), Expect = 8.6
Identities = 51/255 (20%), Positives = 79/255 (30%), Gaps = 35/255 (13%)
Query: 13 SVAHAQAGELLSPGHARSAAAQHRGLVAPGRPGLVAGMASLLDGGGGGGGGGAGGAGGAG 72
S A + G + G + + + P L+ +S G GG +GG G
Sbjct: 265 SFAQQRFGAMGGGGPSAAGGGTPQPTATPTLNQLLTSPSSARGYQGYPGGDYSGGPQDGG 324
Query: 73 SAGGGADFRGELAGPLHPAMGMACEAPGL-----------GGTYTTLTPLQHLPPLAAVA 121
+ G AD + G A A + G G + PL P ++
Sbjct: 325 AGKGPADMASQCWGAAAAAAAAAAASGGAQQRSHHAPMSPGSSGGGGQPLARTPQPSSPM 384
Query: 122 DKFHQHAAAAAVAGAHGGHPHAHPHPAAAPPPPP---------PPQRLAASVSGSFTLMR 172
D+ G P+ +P + PP P Q + + +
Sbjct: 385 DQM----------GKMRPQPYGGTNPYSQQQGPPSGPQQGHGYPGQPYGSQTPQRYPMTM 434
Query: 173 DERAALASVGHLY----GPYGKELPAMGSPLSPLPNALPPALHGAPQPPP-PPPPPPLAA 227
RA A G Y PYG++ P+ P + H Q PP PP
Sbjct: 435 QGRAQSAMGGLSYTQQIPPYGQQGPSGYGQQGQTPYYNQQSPHPQQQQPPYSQQPPSQTP 494
Query: 228 YGPPGHLAGDKLLPP 242
+ P + + PP
Sbjct: 495 HAQPSYQQQPQSQPP 509
>gi|21264575 AT rich interactive domain 1A isoform b [Homo sapiens]
Length = 2068
Score = 65.1 bits (157), Expect = 1e-10
Identities = 84/325 (25%), Positives = 106/325 (32%), Gaps = 61/325 (18%)
Query: 17 AQAGELLSPGHARSAAAQHRGLVAPGRPGLVAGMASLLDGGGGGGGGGAGGAGGAGSAGG 76
A A G ++AA Q A G P + L DG GGGG GGAG G G
Sbjct: 39 AAAAAAAERGEMKAAAGQESEGPAVGPPQPLG--KELQDGAESNGGGGGGGAGSGGGPGA 96
Query: 77 GADFRGEL--AGPLHPAMGMACEAPGLGGTYTTLTPLQHLPPLAAVADKFHQHAAAAAVA 134
D + AGP E PG GG
Sbjct: 97 EPDLKNSNGNAGPRPALNNNLTEPPGGGG------------------------------- 125
Query: 135 GAHGGHPHAHPHPAAAPPPPPP----------PQRLAASVSGSFTLMRDERAALASVGHL 184
G A PH AAA PPP P +AA+ + F + +
Sbjct: 126 GGSSDGVGAPPHSAAAALPPPAYGFGQPYGRSPSAVAAAAAAVFHQQHGGQQSPGLAALQ 185
Query: 185 YGPYGKELPAMGSPLSPLPNALPPALHGAPQPPP---PPPPPPLAAYGPPGHLAGDKLLP 241
G G P G + + P + + P PPP P A P G G
Sbjct: 186 SGGGGGLEPYAGPQQNSHDHGFPNHQYNSYYPNRSAYPPPAPAYALSSPRGGTPGSGAAA 245
Query: 242 PAAFEP---HAALLGRAEDALARGLPGGGGGTGSGGAGSGSAAGLLAPL------GGLAA 292
A +P +A + + A+ G GG G AG G+ P +A
Sbjct: 246 AAGSKPPPSSSASASSSSSSFAQQRFGAMGGGGPSAAGGGTPQPTATPTLNQLLTSPSSA 305
Query: 293 AGAHGPHGG--GGGP--GGSGGGPS 313
G G GG GGP GG+G GP+
Sbjct: 306 RGYQGYPGGDYSGGPQDGGAGKGPA 330
Score = 47.4 bits (111), Expect = 3e-05
Identities = 38/108 (35%), Positives = 40/108 (37%), Gaps = 18/108 (16%)
Query: 207 PPALHGAPQPPPPPPPPPLAAYGPPGHLAGDKLLPPAAFEPHAALLGRAEDALARGLPGG 266
P A PPPPPP A AG + AA E R E A
Sbjct: 7 PAAASSLGNPPPPPPSELKKAEQQQREEAGGEAAAAAAAE-------RGEMKAA------ 53
Query: 267 GGGTGSGGAGSGSAAGLLAPLGGLAAAGAHGPHGGGGGPGGSGGGPSA 314
+G G A G PLG GA GGGGG GSGGGP A
Sbjct: 54 -----AGQESEGPAVGPPQPLGKELQDGAESNGGGGGGGAGSGGGPGA 96
Score = 47.4 bits (111), Expect = 3e-05
Identities = 74/320 (23%), Positives = 96/320 (30%), Gaps = 31/320 (9%)
Query: 31 AAAQHRGLVAPGRPG-LVAGMASLLDGGGGGGGGGAGGAGGAGSAGGGADFRGELAGPLH 89
AAA G P P L + GG A G A G + G GP
Sbjct: 8 AAASSLGNPPPPPPSELKKAEQQQREEAGGEAAAAAAAERGEMKAAAGQESEGPAVGPPQ 67
Query: 90 PA-----------MGMACEAPGLGGTYTTLTPLQHLPPLAAVADKFHQHAAAAAVAGAHG 138
P G G GG L++ A + + G G
Sbjct: 68 PLGKELQDGAESNGGGGGGGAGSGGGPGAEPDLKNSNGNAGPRPALNNNLTEPPGGGGGG 127
Query: 139 GHP--HAHPHPAAAPPPPP----------PPQRLAASVSGSFTLMRDERAALASVGHLYG 186
A PH AAA PPP P +AA+ + F + + G
Sbjct: 128 SSDGVGAPPHSAAAALPPPAYGFGQPYGRSPSAVAAAAAAVFHQQHGGQQSPGLAALQSG 187
Query: 187 PYGKELPAMGSPLSPLPNALPPALHGAPQP---PPPPPPPPLAAYGPPGHLAGDKLLPPA 243
G P G + + P + + P PPP P A P G G A
Sbjct: 188 GGGGLEPYAGPQQNSHDHGFPNHQYNSYYPNRSAYPPPAPAYALSSPRGGTPGSGAAAAA 247
Query: 244 AFEP---HAALLGRAEDALARGLPGGGGGTGSGGAGSGSAAGLLAPLGGLAAAGAHGPHG 300
+P +A + + A+ G GG G AG G+ P G
Sbjct: 248 GSKPPPSSSASASSSSSSFAQQRFGAMGGGGPSAAGGGTPQPTATPTLNQLLTSPSSARG 307
Query: 301 GGGGPGGS-GGGPSAGAAAE 319
G PGG GGP G A +
Sbjct: 308 YQGYPGGDYSGGPQDGGAGK 327
Score = 42.4 bits (98), Expect = 0.001
Identities = 65/211 (30%), Positives = 74/211 (35%), Gaps = 62/211 (29%)
Query: 147 PAAAP----PPPPPPQRLAASVSGSFTLMRDERAALASV--GHLYGPYGKEL--PAMGSP 198
PAAA PPPPPP L + E AA A+ G + G+E PA+G P
Sbjct: 7 PAAASSLGNPPPPPPSELKKAEQQQREEAGGEAAAAAAAERGEMKAAAGQESEGPAVGPP 66
Query: 199 LSPLPNALPPALH--------GAPQPPPPPPPPPLA-AYGPPGHLAGDKLLPPAAFEPHA 249
PL L GA P P L + G G P
Sbjct: 67 -QPLGKELQDGAESNGGGGGGGAGSGGGPGAEPDLKNSNGNAG--------------PRP 111
Query: 250 ALLGRAEDALARGLPGGGGGTGSGGAGS--GSAAGLLAP---------------LGGLAA 292
AL + PGGGGG S G G+ SAA L P + AA
Sbjct: 112 ALNNNLTEP-----PGGGGGGSSDGVGAPPHSAAAALPPPAYGFGQPYGRSPSAVAAAAA 166
Query: 293 AGAHGPHGGGGGPG------GSGGG--PSAG 315
A H HGG PG G GGG P AG
Sbjct: 167 AVFHQQHGGQQSPGLAALQSGGGGGLEPYAG 197
Score = 31.2 bits (69), Expect = 2.3
Identities = 54/213 (25%), Positives = 69/213 (32%), Gaps = 53/213 (24%)
Query: 55 DGGGGGGG--------GGAGGAGGAGSAGGGADFRGELAGPLHPAMGMACEAPGLGGTYT 106
DGG G G G A A A +A GGA R A P+ P + G GG
Sbjct: 322 DGGAGKGPADMASQCWGAAAAAAAAAAASGGAQQRSHHA-PMSPG------SSGGGGQPL 374
Query: 107 TLTPLQHLPPLAAVADKFHQHAAA----AAVAGAHGGHPHAHPHPAAAPPPPPPPQRLAA 162
TP Q P+ + Q + G G H +P P PQR
Sbjct: 375 ARTP-QPSSPMDQMGKMRPQPYGGTNPYSQQQGPPSGPQQGHGYPGQ-PYGSQTPQRYPM 432
Query: 163 SVSGSFTLMRDERAALASVGHLYG----PYGKELPA--------------------MGSP 198
++ G RA A G Y PYG++ P+ P
Sbjct: 433 TMQG--------RAQSAMGGLSYTQQIPPYGQQGPSGYGQQGQTPYYNQQSPHPQQQQPP 484
Query: 199 LSPLPNALPPALHGAPQPPPPPPPPPLAAYGPP 231
S P + P + Q P PP L + PP
Sbjct: 485 YSQQPPSQTPHAQPSYQQQPQSQPPQLQSSQPP 517
Score = 29.3 bits (64), Expect = 8.6
Identities = 51/255 (20%), Positives = 79/255 (30%), Gaps = 35/255 (13%)
Query: 13 SVAHAQAGELLSPGHARSAAAQHRGLVAPGRPGLVAGMASLLDGGGGGGGGGAGGAGGAG 72
S A + G + G + + + P L+ +S G GG +GG G
Sbjct: 265 SFAQQRFGAMGGGGPSAAGGGTPQPTATPTLNQLLTSPSSARGYQGYPGGDYSGGPQDGG 324
Query: 73 SAGGGADFRGELAGPLHPAMGMACEAPGL-----------GGTYTTLTPLQHLPPLAAVA 121
+ G AD + G A A + G G + PL P ++
Sbjct: 325 AGKGPADMASQCWGAAAAAAAAAAASGGAQQRSHHAPMSPGSSGGGGQPLARTPQPSSPM 384
Query: 122 DKFHQHAAAAAVAGAHGGHPHAHPHPAAAPPPPP---------PPQRLAASVSGSFTLMR 172
D+ G P+ +P + PP P Q + + +
Sbjct: 385 DQM----------GKMRPQPYGGTNPYSQQQGPPSGPQQGHGYPGQPYGSQTPQRYPMTM 434
Query: 173 DERAALASVGHLY----GPYGKELPAMGSPLSPLPNALPPALHGAPQPPP-PPPPPPLAA 227
RA A G Y PYG++ P+ P + H Q PP PP
Sbjct: 435 QGRAQSAMGGLSYTQQIPPYGQQGPSGYGQQGQTPYYNQQSPHPQQQQPPYSQQPPSQTP 494
Query: 228 YGPPGHLAGDKLLPP 242
+ P + + PP
Sbjct: 495 HAQPSYQQQPQSQPP 509
>gi|73476377 LBXCOR1 homolog [Homo sapiens]
Length = 921
Score = 64.3 bits (155), Expect = 2e-10
Identities = 81/244 (33%), Positives = 90/244 (36%), Gaps = 61/244 (25%)
Query: 57 GGGGGGGGAGGAGGAGSAGGGADFRGELAGPLHPAMGMACEAPGLGGTYTTLTPLQHLPP 116
G G GGGGAG GGAG G A L P G PG G + P
Sbjct: 380 GTGSGGGGAGTGGGAGGPG---------ASHLPPGAG---AGPGGGAMFWGHQPSGAAKD 427
Query: 117 LAAVADKFHQHAAAAAVAGAHGGHPHAHPHPAAAPPPP-PPPQRLAASVSGSFTLMRDER 175
AAV AAAAA A + P P + P P P Q A +V+ +
Sbjct: 428 AAAV-------AAAAAAATVYPTFPMFWPAAGSLPVPSYPAAQSQAKAVAAAVAAAAAAA 480
Query: 176 AALASVGHLYGPYGKELPAMGSPL------------SPL-----PNALPPALHGAPQPPP 218
AA A G G E PA S L PL ALPP L AP PPP
Sbjct: 481 AAAAGSGAPEPLDGAE-PAKESGLGAEERCPSALSRGPLDEDGTDEALPPPL--APLPPP 537
Query: 219 PPPPPPLAAYGPPGHLAGDKLLPPAAFEP-------HAALLGRAEDALARG-LPGGGGGT 270
PPPP +Y +AF P A L G A +A G G G G
Sbjct: 538 PPPPARKGSY-------------VSAFRPVVKDTESIAKLYGSAREAYGAGPARGPGPGA 584
Query: 271 GSGG 274
GSGG
Sbjct: 585 GSGG 588
Score = 55.5 bits (132), Expect = 1e-07
Identities = 53/177 (29%), Positives = 64/177 (36%), Gaps = 43/177 (24%)
Query: 148 AAAPPPPPPPQRLAASVSGSFTLMRDERAALASVGHLYGPYGKELPAMGSPLSPLPNA-L 206
AA PP PPPP + L GP G P G+ + P +
Sbjct: 289 AAGPPGPPPPH---------------PQRGLGLATGASGPAGPGGPGGGAGVRSYPVIPV 333
Query: 207 PPALHGAPQPPPPPPPPPLAAYGPPGHLAGDKLLPPAAFEPHAALLGRAED-ALARGLPG 265
P G Q PPP P P F L + +D L G P
Sbjct: 334 PSKGFGLLQKLPPPLFPH-----------------PYGFPTAFGLCPKKDDPVLGAGEPK 376
Query: 266 GGGGTGSGGAGSGSAAGLLAPLGGLAAAGAHGPHGGGGGPGGSG---GGPSAGAAAE 319
GG GTGSGG G+G+ G P +H P G G GPGG G +GAA +
Sbjct: 377 GGPGTGSGGGGAGTGGGAGGP------GASHLPPGAGAGPGGGAMFWGHQPSGAAKD 427
>gi|98985810 alpha 1 type XI collagen isoform B preproprotein [Homo
sapiens]
Length = 1818
Score = 63.5 bits (153), Expect = 4e-10
Identities = 86/298 (28%), Positives = 103/298 (34%), Gaps = 33/298 (11%)
Query: 42 GRPGLVAGMASLLDGGGGGGGGGAGGAGGAGSAGGGADFRGELAGPLHPAMGMACEAPGL 101
G PG V + + + G G G G G AG GG RGE P A PG
Sbjct: 1252 GPPGSVGSVGGVGEKGEPGEAGNPGPPGEAG-VGGPKGERGEKGEAGPPG---AAGPPGA 1307
Query: 102 GGTYTTLTPLQHLPPLAAVADKFHQHAAAAA----VAGAHG-----GHPHAHPHPAAAPP 152
G P + P+ D A V G G G P P P+
Sbjct: 1308 KGPPGDDGPKGNPGPVGFPGDPGPPGEPGPAGQDGVGGDKGEDGDPGQP-GPPGPSGEAG 1366
Query: 153 PPPPPQRLAASVSGSFTLMRDERAALASVGHLYGPYGKELPAMGSPLSPLPNALPPALHG 212
PP PP + + + E+ A G GP GK P P P P L G
Sbjct: 1367 PPGPPGKRGPPGAAGAEGRQGEKGAKGEAG-AEGPPGKTGPV--GPQGPAGKPGPEGLRG 1423
Query: 213 APQPPPPPPPPPLAAY-GPPGHLAGDKLLPPAAFEP-------HAALLG------RAEDA 258
P P P A GPPG + G LP +P H L+G +
Sbjct: 1424 IPGPVGEQGLPGAAGQDGPPGPM-GPPGLPGLKGDPGSKGEKGHPGLIGLIGPPGEQGEK 1482
Query: 259 LARGLPGGGGGTGS-GGAGSGSAAGLLAPLGGLAAAGAHGPHGGGGGPGGSGGGPSAG 315
RGLPG G G+ G G AG L P G G GP G G G +G +G
Sbjct: 1483 GDRGLPGTQGSPGAKGDGGIPGPAGPLGPPGPPGLPGPQGPKGNKGSTGPAGQKGDSG 1540
Score = 48.1 bits (113), Expect = 2e-05
Identities = 88/326 (26%), Positives = 105/326 (32%), Gaps = 51/326 (15%)
Query: 20 GELLSPGHARSAAAQHRGLVAPGRPGLVAGMASLLDGGGGGGGGGAGGAGGAGSAG--GG 77
GE+ PG S + PG PGL + + GG G G G G G G G
Sbjct: 1141 GEIGEPGQKGSKGDKGEN-GPPGPPGLQGPVGAPGIAGGDGEPGPRGQQGMFGQKGDEGA 1199
Query: 78 ADFRGELAGPLHPAMGMACEAPGLGGTYTTLTPLQHLPPLAAVADKFHQHA----AAAAV 133
F G GP+ G+ PG G + P+ P + A
Sbjct: 1200 RGFPGP-PGPIG-LQGLP-GPPGEKGENGDVGPMGPPGPPGPRGPQGPNGADGPQGPPGS 1256
Query: 134 AGAHGGHPHAHPHPAAAPPPPPPPQRLAASVSGSFTLMRDERAALASVGHLYGPYGKELP 193
G+ GG P A P PP + G R E+ G P K P
Sbjct: 1257 VGSVGGVGEKG-EPGEAGNPGPPGEAGVGGPKGE----RGEKGEAGPPGAAGPPGAKGPP 1311
Query: 194 AMGSPL-SPLPNALP--PALHGAP----------------QPPPPPPPPPLAAYGPPGHL 234
P +P P P P G P P P PP P GPPG
Sbjct: 1312 GDDGPKGNPGPVGFPGDPGPPGEPGPAGQDGVGGDKGEDGDPGQPGPPGPSGEAGPPG-- 1369
Query: 235 AGDKLLPPAAFEPHAALLGRAEDALARGLPGGGGGTGSGGAGSGSAAGLLAPLGGLAAAG 294
PP P A A A G G G G AG+ G P+G AG
Sbjct: 1370 ------PPGKRGPPGA-------AGAEGRQGEKGAKGE--AGAEGPPGKTGPVGPQGPAG 1414
Query: 295 AHGPHGGGGGPGGSGGGPSAGAAAEE 320
GP G G PG G GAA ++
Sbjct: 1415 KPGPEGLRGIPGPVGEQGLPGAAGQD 1440
Score = 47.0 bits (110), Expect = 4e-05
Identities = 85/301 (28%), Positives = 90/301 (29%), Gaps = 50/301 (16%)
Query: 36 RGLV-APGRPGLVAGMASLLDGGGGGGGGGAGGAGGAGSAGGGADFRGELAGPLHPAMGM 94
RGL A G PGL G G G G G AG AG G R GP PA
Sbjct: 1044 RGLPGAQGAPGLKGGEGPQGPPGPVGSPGERGSAGTAGPIG--LPGRPGPQGPPGPAGEK 1101
Query: 95 ACEAPGLGGTYTTLTPLQHLPPLAAVADKFHQHAAAAAVAGAHGGHPHAHPHPAAAPPP- 153
APG G P A D AG G P
Sbjct: 1102 G--APGEKG-----------PQGPAGRDGVQGPVGLPGPAGPAGSPGEDGDKGEIGEPGQ 1148
Query: 154 -----------PPPPQRLAASVSGSFTLMRDERAALASVGHLYGPYGKELPAMGSPLSPL 202
PP P L V D ++G G E A G P P
Sbjct: 1149 KGSKGDKGENGPPGPPGLQGPVGAPGIAGGDGEPGPRGQQGMFGQKGDE-GARGFPGPPG 1207
Query: 203 PNALPPALHGAPQPP-------------PPPPPPPLAAYGPPGHLAGDKLLPPAAFEPHA 249
P L G P PP PP PP P GP G A PP +
Sbjct: 1208 PIGL----QGLPGPPGEKGENGDVGPMGPPGPPGPRGPQGPNG--ADGPQGPPGSVGSVG 1261
Query: 250 ALLGRAEDALARGLPGGGGGTGSGG-AGSGSAAGLLAPLGGLAAAGAHGPHGGGGGPGGS 308
+ + E A G PG G G GG G G P G GA GP G G G
Sbjct: 1262 GVGEKGEPGEA-GNPGPPGEAGVGGPKGERGEKGEAGPPGAAGPPGAKGPPGDDGPKGNP 1320
Query: 309 G 309
G
Sbjct: 1321 G 1321
Score = 45.8 bits (107), Expect = 9e-05
Identities = 83/322 (25%), Positives = 94/322 (29%), Gaps = 54/322 (16%)
Query: 18 QAGELLSPGHARSAAAQHRGLVAPGRPGLVAGMASLLDGGGGGGGGGAGGAGGAGSAGGG 77
+AG PG + A + + L PG PG G G G GA G GA G
Sbjct: 830 RAGPTGDPGPSGQAGEKGK-LGVPGLPGY-PGRQGPKGSTGFPGFPGANGEKGARGVAGK 887
Query: 78 ADFRGELAGPLHPAMGMACEAP-GLGGTYTTLTPLQHLPPLAAVADKFHQHAAAAAVAGA 136
RG+ GP P P G G P + D G
Sbjct: 888 PGPRGQ-RGPTGPRGSRGARGPTGKPG-----------PKGTSGGDGPPGPPGERGPQGP 935
Query: 137 HGGHPHAHPHPAAAPPPPP-------PPQRLAASVSGSFTLMRDERAALASVGHLYGPYG 189
G P P P P PP P QR G + G + GP G
Sbjct: 936 QG--PVGFPGPKGPPGPPGKDGLPGHPGQRGETGFQG--------KTGPPGPGGVVGPQG 985
Query: 190 KELPAMGSPLSPLPNALPPALHGAPQPPPPPPPPPL-------AAYGPPGHLAGDKLLPP 242
P P G P PP PP L A G PG P
Sbjct: 986 -----------PTGETGPIGERGHPGPPGPPGEQGLPGAAGKEGAKGDPGPQGISGKDGP 1034
Query: 243 AAFEPHAALLGRAEDALARGLPGGGGGTGS----GGAGSGSAAGLLAPLGGLAAAGAHGP 298
A G A GL GG G G G G +AG P+G G GP
Sbjct: 1035 AGLRGFPGERGLPGAQGAPGLKGGEGPQGPPGPVGSPGERGSAGTAGPIGLPGRPGPQGP 1094
Query: 299 HGGGGGPGGSGGGPSAGAAAEE 320
G G G G G A +
Sbjct: 1095 PGPAGEKGAPGEKGPQGPAGRD 1116
Score = 45.8 bits (107), Expect = 9e-05
Identities = 81/303 (26%), Positives = 96/303 (31%), Gaps = 48/303 (15%)
Query: 41 PGRPGLVAGMASLLDGGGGGGGGGAGGAGGAGSAGGGADFRGELAGPLHPAMGMACEAPG 100
PG PG G L G G G G G G A RG P + A APG
Sbjct: 999 PGPPG-PPGEQGLPGAAGKEGAKGDPGPQGISGKDGPAGLRGF---PGERGLPGAQGAPG 1054
Query: 101 LGGTYTTLTPLQHLPPLAAVADKFHQHAAAAAVAGAHGGHPHAHPHPAAAPPPPPPPQRL 160
L G P P+ + ++ +A AG G P PP P ++
Sbjct: 1055 LKGGEGPQGPPG---PVGSPGER-----GSAGTAGPIG----LPGRPGPQGPPGPAGEKG 1102
Query: 161 AASVSGSFTLMRDERAALASVGHLYGPYGKELPA--MGSPLSPLPNAL--PPALHGAP-- 214
A G A + GP G PA GSP P G+
Sbjct: 1103 APGEKGP--------QGPAGRDGVQGPVGLPGPAGPAGSPGEDGDKGEIGEPGQKGSKGD 1154
Query: 215 --QPPPPPPPPPLAAYGPPGHLAGDKLLPPAAFEPHAALLGRAEDALARGLPGGGGGTG- 271
+ PP PP G PG GD P + + G+ D ARG PG G G
Sbjct: 1155 KGENGPPGPPGLQGPVGAPGIAGGDGEPGPRGQQ---GMFGQKGDEGARGFPGPPGPIGL 1211
Query: 272 ------------SGGAGSGSAAGLLAPLGGLAAAGAHGPHGGGGGPGGSGGGPSAGAAAE 319
+G G G P G GA GP G G G GG G E
Sbjct: 1212 QGLPGPPGEKGENGDVGPMGPPGPPGPRGPQGPNGADGPQGPPGSVGSVGGVGEKGEPGE 1271
Query: 320 EIN 322
N
Sbjct: 1272 AGN 1274
Score = 41.6 bits (96), Expect = 0.002
Identities = 57/195 (29%), Positives = 66/195 (33%), Gaps = 25/195 (12%)
Query: 141 PHAHPHPAAAPPPPPPPQRLAASVSGSFTL----MRDERAALASVGHLYGPYGKELPA-- 194
P + P+ P P S++G + E A + + GP G PA
Sbjct: 405 PTSPPNEEFGPGVPAETDITETSINGHGAYGEKGQKGEPAVVEPGMLVEGPPGPAGPAGI 464
Query: 195 MGSPLSPLPNALP--PALHGAPQPPPPP-----PPPPLAAYGPPGHLAGDKLLPPAAFEP 247
MG P P P P G P P P P PP P GD P
Sbjct: 465 MGPPGLQGPTGPPGDPGDRGPPGRPGLPGADGLPGPPGTMLMLPFRYGGDGSKGPTISAQ 524
Query: 248 HA---ALLGRAEDALA--------RGLPGGGGGTGSGGA-GSGSAAGLLAPLGGLAAAGA 295
A A+L +A AL G PG GG GS GA G G P G G
Sbjct: 525 EAQAQAILQQARIALRGPPGPMGLTGRPGPVGGPGSSGAKGESGDPGPQGPRGVQGPPGP 584
Query: 296 HGPHGGGGGPGGSGG 310
G G G PG GG
Sbjct: 585 TGKPGKRGRPGADGG 599
Score = 41.2 bits (95), Expect = 0.002
Identities = 92/332 (27%), Positives = 104/332 (31%), Gaps = 70/332 (21%)
Query: 7 SLGGLHSVAHAQAGELLSPGHARSAAAQHRGLVA-PGRPGLVAGMASLLDGGGGGGGGGA 65
S G S AQA +L AR A G + GRPG V G S G G G
Sbjct: 516 SKGPTISAQEAQAQAILQ--QARIALRGPPGPMGLTGRPGPVGGPGSSGAKGESGDPGPQ 573
Query: 66 GGAGGAGSAG--GGADFRGELAGPLHPAMGMACEAPGLGGTYTTLTPLQHLPPLAAVADK 123
G G G G G RG P PG G A D+
Sbjct: 574 GPRGVQGPPGPTGKPGKRGR------PGADGGRGMPGEPG---------------AKGDR 612
Query: 124 FHQHAAAAAVAGAHGGHPHAHPHPAAAPPPPPPPQRLAASVSGSFTLMRDERAALASVGH 183
+ G G H PP PP MR E + G
Sbjct: 613 GFD-----GLPGLPGDKGHRGERGPQGPPGPPGDDG-----------MRGEDGEIGPRG- 655
Query: 184 LYGPYGKE--LPAMGSPLSPLPNAL-----PPALHG--APQPPPPPP-----PPPLAAYG 229
L G G L G+P +P + PP G PQ P PP P P G
Sbjct: 656 LPGEAGPRGLLGPRGTPGAPGQPGMAGVDGPPGPKGNMGPQGEPGPPGQQGNPGPQGLPG 715
Query: 230 PPGHLAGDKLLPPAAFEPHAALLGRAEDALARGLPGGGGGTGSGGA-GSGSAAGLLAPLG 288
P G + PP P + + LA GLPG G G G G G L P G
Sbjct: 716 PQGPIG-----PPGEKGP------QGKPGLA-GLPGADGPPGHPGKEGQSGEKGALGPPG 763
Query: 289 GLAAAGAHGPHGGGGGPGGSGGGPSAGAAAEE 320
G GP G G G G S G E+
Sbjct: 764 PQGPIGYPGPRGVKGADGVRGLKGSKGEKGED 795
Score = 39.3 bits (90), Expect = 0.008
Identities = 46/142 (32%), Positives = 55/142 (38%), Gaps = 13/142 (9%)
Query: 185 YGPYGKELPAMGSPLSPLPNALPPALHGAPQPPPPP----PPPPLAAYGPPGHLAGDKLL 240
+G YG E G P P L + G P P P PP GPPG GD+
Sbjct: 431 HGAYG-EKGQKGEPAVVEPGML---VEGPPGPAGPAGIMGPPGLQGPTGPPGD-PGDRGP 485
Query: 241 PPAAFEPHAALLGRAEDALARGLPGGGGGTGSGG---AGSGSAAGLLAPLGGLAAAGAHG 297
P P A L + LP GG GS G + + A + +A G G
Sbjct: 486 PGRPGLPGADGLPGPPGTMLM-LPFRYGGDGSKGPTISAQEAQAQAILQQARIALRGPPG 544
Query: 298 PHGGGGGPGGSGGGPSAGAAAE 319
P G G PG GG S+GA E
Sbjct: 545 PMGLTGRPGPVGGPGSSGAKGE 566
Score = 37.4 bits (85), Expect = 0.032
Identities = 50/160 (31%), Positives = 56/160 (35%), Gaps = 36/160 (22%)
Query: 186 GPYGKELPAMGSPLSPLPNALPPALHGAPQPPPPPP-------PPPLA----AYGPPGH- 233
GP G+ P G +P P LP PQ P PP P LA A GPPGH
Sbjct: 694 GPQGEPGPP-GQQGNPGPQGLP-----GPQGPIGPPGEKGPQGKPGLAGLPGADGPPGHP 747
Query: 234 ----LAGDK--LLPPAAFEP--HAALLGRAEDALARGLPGGGGGTGSGG----------A 275
+G+K L PP P + G RGL G G G G
Sbjct: 748 GKEGQSGEKGALGPPGPQGPIGYPGPRGVKGADGVRGLKGSKGEKGEDGFPGFKGDMGLK 807
Query: 276 GSGSAAGLLAPLGGLAAAGAHGPHGGGGGPGGSGGGPSAG 315
G G + P G G G G G PG SG G
Sbjct: 808 GDRGEVGQIGPRGEDGPEGPKGRAGPTGDPGPSGQAGEKG 847
Score = 35.0 bits (79), Expect = 0.16
Identities = 50/185 (27%), Positives = 54/185 (29%), Gaps = 39/185 (21%)
Query: 139 GHPHAHPHPAAAPPPPPP------PQRLAASVSGSFTLMRDERAALASVGH----LYGPY 188
G P P A P PP P R S T+ E A A + L GP
Sbjct: 484 GPPGRPGLPGADGLPGPPGTMLMLPFRYGGDGSKGPTISAQEAQAQAILQQARIALRGPP 543
Query: 189 GKELPAMGSPLSPLPNALPPALHGAPQPPPPPPPPPLAAYGPPGHLAGDKLLPPAAFEPH 248
G MG P P P + + P P P GPPG
Sbjct: 544 GP----MGLTGRPGPVGGPGSSGAKGESGDPGPQGPRGVQGPPGPTGKPG---------- 589
Query: 249 AALLGRAEDALARGLPGGGGGTG----SGGAGSGSAAGLLAPLGGLAAAGAHGPHGGGGG 304
RG PG GG G G G GL G G GP G G
Sbjct: 590 -----------KRGRPGADGGRGMPGEPGAKGDRGFDGLPGLPGDKGHRGERGPQGPPGP 638
Query: 305 PGGSG 309
PG G
Sbjct: 639 PGDDG 643
>gi|98985808 alpha 1 type XI collagen isoform C preproprotein [Homo
sapiens]
Length = 1767
Score = 63.5 bits (153), Expect = 4e-10
Identities = 86/298 (28%), Positives = 103/298 (34%), Gaps = 33/298 (11%)
Query: 42 GRPGLVAGMASLLDGGGGGGGGGAGGAGGAGSAGGGADFRGELAGPLHPAMGMACEAPGL 101
G PG V + + + G G G G G AG GG RGE P A PG
Sbjct: 1201 GPPGSVGSVGGVGEKGEPGEAGNPGPPGEAG-VGGPKGERGEKGEAGPPG---AAGPPGA 1256
Query: 102 GGTYTTLTPLQHLPPLAAVADKFHQHAAAAA----VAGAHG-----GHPHAHPHPAAAPP 152
G P + P+ D A V G G G P P P+
Sbjct: 1257 KGPPGDDGPKGNPGPVGFPGDPGPPGEPGPAGQDGVGGDKGEDGDPGQP-GPPGPSGEAG 1315
Query: 153 PPPPPQRLAASVSGSFTLMRDERAALASVGHLYGPYGKELPAMGSPLSPLPNALPPALHG 212
PP PP + + + E+ A G GP GK P P P P L G
Sbjct: 1316 PPGPPGKRGPPGAAGAEGRQGEKGAKGEAG-AEGPPGKTGPV--GPQGPAGKPGPEGLRG 1372
Query: 213 APQPPPPPPPPPLAAY-GPPGHLAGDKLLPPAAFEP-------HAALLG------RAEDA 258
P P P A GPPG + G LP +P H L+G +
Sbjct: 1373 IPGPVGEQGLPGAAGQDGPPGPM-GPPGLPGLKGDPGSKGEKGHPGLIGLIGPPGEQGEK 1431
Query: 259 LARGLPGGGGGTGS-GGAGSGSAAGLLAPLGGLAAAGAHGPHGGGGGPGGSGGGPSAG 315
RGLPG G G+ G G AG L P G G GP G G G +G +G
Sbjct: 1432 GDRGLPGTQGSPGAKGDGGIPGPAGPLGPPGPPGLPGPQGPKGNKGSTGPAGQKGDSG 1489
Score = 48.1 bits (113), Expect = 2e-05
Identities = 88/326 (26%), Positives = 105/326 (32%), Gaps = 51/326 (15%)
Query: 20 GELLSPGHARSAAAQHRGLVAPGRPGLVAGMASLLDGGGGGGGGGAGGAGGAGSAG--GG 77
GE+ PG S + PG PGL + + GG G G G G G G G
Sbjct: 1090 GEIGEPGQKGSKGDKGEN-GPPGPPGLQGPVGAPGIAGGDGEPGPRGQQGMFGQKGDEGA 1148
Query: 78 ADFRGELAGPLHPAMGMACEAPGLGGTYTTLTPLQHLPPLAAVADKFHQHA----AAAAV 133
F G GP+ G+ PG G + P+ P + A
Sbjct: 1149 RGFPGP-PGPIG-LQGLP-GPPGEKGENGDVGPMGPPGPPGPRGPQGPNGADGPQGPPGS 1205
Query: 134 AGAHGGHPHAHPHPAAAPPPPPPPQRLAASVSGSFTLMRDERAALASVGHLYGPYGKELP 193
G+ GG P A P PP + G R E+ G P K P
Sbjct: 1206 VGSVGGVGEKG-EPGEAGNPGPPGEAGVGGPKGE----RGEKGEAGPPGAAGPPGAKGPP 1260
Query: 194 AMGSPL-SPLPNALP--PALHGAP----------------QPPPPPPPPPLAAYGPPGHL 234
P +P P P P G P P P PP P GPPG
Sbjct: 1261 GDDGPKGNPGPVGFPGDPGPPGEPGPAGQDGVGGDKGEDGDPGQPGPPGPSGEAGPPG-- 1318
Query: 235 AGDKLLPPAAFEPHAALLGRAEDALARGLPGGGGGTGSGGAGSGSAAGLLAPLGGLAAAG 294
PP P A A A G G G G AG+ G P+G AG
Sbjct: 1319 ------PPGKRGPPGA-------AGAEGRQGEKGAKGE--AGAEGPPGKTGPVGPQGPAG 1363
Query: 295 AHGPHGGGGGPGGSGGGPSAGAAAEE 320
GP G G PG G GAA ++
Sbjct: 1364 KPGPEGLRGIPGPVGEQGLPGAAGQD 1389
Score = 47.0 bits (110), Expect = 4e-05
Identities = 85/301 (28%), Positives = 90/301 (29%), Gaps = 50/301 (16%)
Query: 36 RGLV-APGRPGLVAGMASLLDGGGGGGGGGAGGAGGAGSAGGGADFRGELAGPLHPAMGM 94
RGL A G PGL G G G G G AG AG G R GP PA
Sbjct: 993 RGLPGAQGAPGLKGGEGPQGPPGPVGSPGERGSAGTAGPIG--LPGRPGPQGPPGPAGEK 1050
Query: 95 ACEAPGLGGTYTTLTPLQHLPPLAAVADKFHQHAAAAAVAGAHGGHPHAHPHPAAAPPP- 153
APG G P A D AG G P
Sbjct: 1051 G--APGEKG-----------PQGPAGRDGVQGPVGLPGPAGPAGSPGEDGDKGEIGEPGQ 1097
Query: 154 -----------PPPPQRLAASVSGSFTLMRDERAALASVGHLYGPYGKELPAMGSPLSPL 202
PP P L V D ++G G E A G P P
Sbjct: 1098 KGSKGDKGENGPPGPPGLQGPVGAPGIAGGDGEPGPRGQQGMFGQKGDE-GARGFPGPPG 1156
Query: 203 PNALPPALHGAPQPP-------------PPPPPPPLAAYGPPGHLAGDKLLPPAAFEPHA 249
P L G P PP PP PP P GP G A PP +
Sbjct: 1157 PIGL----QGLPGPPGEKGENGDVGPMGPPGPPGPRGPQGPNG--ADGPQGPPGSVGSVG 1210
Query: 250 ALLGRAEDALARGLPGGGGGTGSGG-AGSGSAAGLLAPLGGLAAAGAHGPHGGGGGPGGS 308
+ + E A G PG G G GG G G P G GA GP G G G
Sbjct: 1211 GVGEKGEPGEA-GNPGPPGEAGVGGPKGERGEKGEAGPPGAAGPPGAKGPPGDDGPKGNP 1269
Query: 309 G 309
G
Sbjct: 1270 G 1270
Score = 45.8 bits (107), Expect = 9e-05
Identities = 83/322 (25%), Positives = 94/322 (29%), Gaps = 54/322 (16%)
Query: 18 QAGELLSPGHARSAAAQHRGLVAPGRPGLVAGMASLLDGGGGGGGGGAGGAGGAGSAGGG 77
+AG PG + A + + L PG PG G G G GA G GA G
Sbjct: 779 RAGPTGDPGPSGQAGEKGK-LGVPGLPGY-PGRQGPKGSTGFPGFPGANGEKGARGVAGK 836
Query: 78 ADFRGELAGPLHPAMGMACEAP-GLGGTYTTLTPLQHLPPLAAVADKFHQHAAAAAVAGA 136
RG+ GP P P G G P + D G
Sbjct: 837 PGPRGQ-RGPTGPRGSRGARGPTGKPG-----------PKGTSGGDGPPGPPGERGPQGP 884
Query: 137 HGGHPHAHPHPAAAPPPPP-------PPQRLAASVSGSFTLMRDERAALASVGHLYGPYG 189
G P P P P PP P QR G + G + GP G
Sbjct: 885 QG--PVGFPGPKGPPGPPGKDGLPGHPGQRGETGFQG--------KTGPPGPGGVVGPQG 934
Query: 190 KELPAMGSPLSPLPNALPPALHGAPQPPPPPPPPPL-------AAYGPPGHLAGDKLLPP 242
P P G P PP PP L A G PG P
Sbjct: 935 -----------PTGETGPIGERGHPGPPGPPGEQGLPGAAGKEGAKGDPGPQGISGKDGP 983
Query: 243 AAFEPHAALLGRAEDALARGLPGGGGGTGS----GGAGSGSAAGLLAPLGGLAAAGAHGP 298
A G A GL GG G G G G +AG P+G G GP
Sbjct: 984 AGLRGFPGERGLPGAQGAPGLKGGEGPQGPPGPVGSPGERGSAGTAGPIGLPGRPGPQGP 1043
Query: 299 HGGGGGPGGSGGGPSAGAAAEE 320
G G G G G A +
Sbjct: 1044 PGPAGEKGAPGEKGPQGPAGRD 1065
Score = 45.8 bits (107), Expect = 9e-05
Identities = 81/303 (26%), Positives = 96/303 (31%), Gaps = 48/303 (15%)
Query: 41 PGRPGLVAGMASLLDGGGGGGGGGAGGAGGAGSAGGGADFRGELAGPLHPAMGMACEAPG 100
PG PG G L G G G G G G A RG P + A APG
Sbjct: 948 PGPPG-PPGEQGLPGAAGKEGAKGDPGPQGISGKDGPAGLRGF---PGERGLPGAQGAPG 1003
Query: 101 LGGTYTTLTPLQHLPPLAAVADKFHQHAAAAAVAGAHGGHPHAHPHPAAAPPPPPPPQRL 160
L G P P+ + ++ +A AG G P PP P ++
Sbjct: 1004 LKGGEGPQGPPG---PVGSPGER-----GSAGTAGPIG----LPGRPGPQGPPGPAGEKG 1051
Query: 161 AASVSGSFTLMRDERAALASVGHLYGPYGKELPA--MGSPLSPLPNAL--PPALHGAP-- 214
A G A + GP G PA GSP P G+
Sbjct: 1052 APGEKGP--------QGPAGRDGVQGPVGLPGPAGPAGSPGEDGDKGEIGEPGQKGSKGD 1103
Query: 215 --QPPPPPPPPPLAAYGPPGHLAGDKLLPPAAFEPHAALLGRAEDALARGLPGGGGGTG- 271
+ PP PP G PG GD P + + G+ D ARG PG G G
Sbjct: 1104 KGENGPPGPPGLQGPVGAPGIAGGDGEPGPRGQQ---GMFGQKGDEGARGFPGPPGPIGL 1160
Query: 272 ------------SGGAGSGSAAGLLAPLGGLAAAGAHGPHGGGGGPGGSGGGPSAGAAAE 319
+G G G P G GA GP G G G GG G E
Sbjct: 1161 QGLPGPPGEKGENGDVGPMGPPGPPGPRGPQGPNGADGPQGPPGSVGSVGGVGEKGEPGE 1220
Query: 320 EIN 322
N
Sbjct: 1221 AGN 1223
Score = 41.6 bits (96), Expect = 0.002
Identities = 57/195 (29%), Positives = 66/195 (33%), Gaps = 25/195 (12%)
Query: 141 PHAHPHPAAAPPPPPPPQRLAASVSGSFTL----MRDERAALASVGHLYGPYGKELPA-- 194
P + P+ P P S++G + E A + + GP G PA
Sbjct: 354 PTSPPNEEFGPGVPAETDITETSINGHGAYGEKGQKGEPAVVEPGMLVEGPPGPAGPAGI 413
Query: 195 MGSPLSPLPNALP--PALHGAPQPPPPP-----PPPPLAAYGPPGHLAGDKLLPPAAFEP 247
MG P P P P G P P P P PP P GD P
Sbjct: 414 MGPPGLQGPTGPPGDPGDRGPPGRPGLPGADGLPGPPGTMLMLPFRYGGDGSKGPTISAQ 473
Query: 248 HA---ALLGRAEDALA--------RGLPGGGGGTGSGGA-GSGSAAGLLAPLGGLAAAGA 295
A A+L +A AL G PG GG GS GA G G P G G
Sbjct: 474 EAQAQAILQQARIALRGPPGPMGLTGRPGPVGGPGSSGAKGESGDPGPQGPRGVQGPPGP 533
Query: 296 HGPHGGGGGPGGSGG 310
G G G PG GG
Sbjct: 534 TGKPGKRGRPGADGG 548
Score = 41.2 bits (95), Expect = 0.002
Identities = 92/332 (27%), Positives = 104/332 (31%), Gaps = 70/332 (21%)
Query: 7 SLGGLHSVAHAQAGELLSPGHARSAAAQHRGLVA-PGRPGLVAGMASLLDGGGGGGGGGA 65
S G S AQA +L AR A G + GRPG V G S G G G
Sbjct: 465 SKGPTISAQEAQAQAILQ--QARIALRGPPGPMGLTGRPGPVGGPGSSGAKGESGDPGPQ 522
Query: 66 GGAGGAGSAG--GGADFRGELAGPLHPAMGMACEAPGLGGTYTTLTPLQHLPPLAAVADK 123
G G G G G RG P PG G A D+
Sbjct: 523 GPRGVQGPPGPTGKPGKRGR------PGADGGRGMPGEPG---------------AKGDR 561
Query: 124 FHQHAAAAAVAGAHGGHPHAHPHPAAAPPPPPPPQRLAASVSGSFTLMRDERAALASVGH 183
+ G G H PP PP MR E + G
Sbjct: 562 GFD-----GLPGLPGDKGHRGERGPQGPPGPPGDDG-----------MRGEDGEIGPRG- 604
Query: 184 LYGPYGKE--LPAMGSPLSPLPNAL-----PPALHG--APQPPPPPP-----PPPLAAYG 229
L G G L G+P +P + PP G PQ P PP P P G
Sbjct: 605 LPGEAGPRGLLGPRGTPGAPGQPGMAGVDGPPGPKGNMGPQGEPGPPGQQGNPGPQGLPG 664
Query: 230 PPGHLAGDKLLPPAAFEPHAALLGRAEDALARGLPGGGGGTGSGGA-GSGSAAGLLAPLG 288
P G + PP P + + LA GLPG G G G G G L P G
Sbjct: 665 PQGPIG-----PPGEKGP------QGKPGLA-GLPGADGPPGHPGKEGQSGEKGALGPPG 712
Query: 289 GLAAAGAHGPHGGGGGPGGSGGGPSAGAAAEE 320
G GP G G G G S G E+
Sbjct: 713 PQGPIGYPGPRGVKGADGVRGLKGSKGEKGED 744
Score = 39.3 bits (90), Expect = 0.008
Identities = 46/142 (32%), Positives = 55/142 (38%), Gaps = 13/142 (9%)
Query: 185 YGPYGKELPAMGSPLSPLPNALPPALHGAPQPPPPP----PPPPLAAYGPPGHLAGDKLL 240
+G YG E G P P L + G P P P PP GPPG GD+
Sbjct: 380 HGAYG-EKGQKGEPAVVEPGML---VEGPPGPAGPAGIMGPPGLQGPTGPPGD-PGDRGP 434
Query: 241 PPAAFEPHAALLGRAEDALARGLPGGGGGTGSGG---AGSGSAAGLLAPLGGLAAAGAHG 297
P P A L + LP GG GS G + + A + +A G G
Sbjct: 435 PGRPGLPGADGLPGPPGTMLM-LPFRYGGDGSKGPTISAQEAQAQAILQQARIALRGPPG 493
Query: 298 PHGGGGGPGGSGGGPSAGAAAE 319
P G G PG GG S+GA E
Sbjct: 494 PMGLTGRPGPVGGPGSSGAKGE 515
Score = 37.4 bits (85), Expect = 0.032
Identities = 50/160 (31%), Positives = 56/160 (35%), Gaps = 36/160 (22%)
Query: 186 GPYGKELPAMGSPLSPLPNALPPALHGAPQPPPPPP-------PPPLA----AYGPPGH- 233
GP G+ P G +P P LP PQ P PP P LA A GPPGH
Sbjct: 643 GPQGEPGPP-GQQGNPGPQGLP-----GPQGPIGPPGEKGPQGKPGLAGLPGADGPPGHP 696
Query: 234 ----LAGDK--LLPPAAFEP--HAALLGRAEDALARGLPGGGGGTGSGG----------A 275
+G+K L PP P + G RGL G G G G
Sbjct: 697 GKEGQSGEKGALGPPGPQGPIGYPGPRGVKGADGVRGLKGSKGEKGEDGFPGFKGDMGLK 756
Query: 276 GSGSAAGLLAPLGGLAAAGAHGPHGGGGGPGGSGGGPSAG 315
G G + P G G G G G PG SG G
Sbjct: 757 GDRGEVGQIGPRGEDGPEGPKGRAGPTGDPGPSGQAGEKG 796
Score = 35.0 bits (79), Expect = 0.16
Identities = 50/185 (27%), Positives = 54/185 (29%), Gaps = 39/185 (21%)
Query: 139 GHPHAHPHPAAAPPPPPP------PQRLAASVSGSFTLMRDERAALASVGH----LYGPY 188
G P P A P PP P R S T+ E A A + L GP
Sbjct: 433 GPPGRPGLPGADGLPGPPGTMLMLPFRYGGDGSKGPTISAQEAQAQAILQQARIALRGPP 492
Query: 189 GKELPAMGSPLSPLPNALPPALHGAPQPPPPPPPPPLAAYGPPGHLAGDKLLPPAAFEPH 248
G MG P P P + + P P P GPPG
Sbjct: 493 GP----MGLTGRPGPVGGPGSSGAKGESGDPGPQGPRGVQGPPGPTGKPG---------- 538
Query: 249 AALLGRAEDALARGLPGGGGGTG----SGGAGSGSAAGLLAPLGGLAAAGAHGPHGGGGG 304
RG PG GG G G G GL G G GP G G
Sbjct: 539 -----------KRGRPGADGGRGMPGEPGAKGDRGFDGLPGLPGDKGHRGERGPQGPPGP 587
Query: 305 PGGSG 309
PG G
Sbjct: 588 PGDDG 592
>gi|98985806 alpha 1 type XI collagen isoform A preproprotein [Homo
sapiens]
Length = 1806
Score = 63.5 bits (153), Expect = 4e-10
Identities = 86/298 (28%), Positives = 103/298 (34%), Gaps = 33/298 (11%)
Query: 42 GRPGLVAGMASLLDGGGGGGGGGAGGAGGAGSAGGGADFRGELAGPLHPAMGMACEAPGL 101
G PG V + + + G G G G G AG GG RGE P A PG
Sbjct: 1240 GPPGSVGSVGGVGEKGEPGEAGNPGPPGEAG-VGGPKGERGEKGEAGPPG---AAGPPGA 1295
Query: 102 GGTYTTLTPLQHLPPLAAVADKFHQHAAAAA----VAGAHG-----GHPHAHPHPAAAPP 152
G P + P+ D A V G G G P P P+
Sbjct: 1296 KGPPGDDGPKGNPGPVGFPGDPGPPGEPGPAGQDGVGGDKGEDGDPGQP-GPPGPSGEAG 1354
Query: 153 PPPPPQRLAASVSGSFTLMRDERAALASVGHLYGPYGKELPAMGSPLSPLPNALPPALHG 212
PP PP + + + E+ A G GP GK P P P P L G
Sbjct: 1355 PPGPPGKRGPPGAAGAEGRQGEKGAKGEAG-AEGPPGKTGPV--GPQGPAGKPGPEGLRG 1411
Query: 213 APQPPPPPPPPPLAAY-GPPGHLAGDKLLPPAAFEP-------HAALLG------RAEDA 258
P P P A GPPG + G LP +P H L+G +
Sbjct: 1412 IPGPVGEQGLPGAAGQDGPPGPM-GPPGLPGLKGDPGSKGEKGHPGLIGLIGPPGEQGEK 1470
Query: 259 LARGLPGGGGGTGS-GGAGSGSAAGLLAPLGGLAAAGAHGPHGGGGGPGGSGGGPSAG 315
RGLPG G G+ G G AG L P G G GP G G G +G +G
Sbjct: 1471 GDRGLPGTQGSPGAKGDGGIPGPAGPLGPPGPPGLPGPQGPKGNKGSTGPAGQKGDSG 1528
Score = 48.1 bits (113), Expect = 2e-05
Identities = 88/326 (26%), Positives = 105/326 (32%), Gaps = 51/326 (15%)
Query: 20 GELLSPGHARSAAAQHRGLVAPGRPGLVAGMASLLDGGGGGGGGGAGGAGGAGSAG--GG 77
GE+ PG S + PG PGL + + GG G G G G G G G
Sbjct: 1129 GEIGEPGQKGSKGDKGEN-GPPGPPGLQGPVGAPGIAGGDGEPGPRGQQGMFGQKGDEGA 1187
Query: 78 ADFRGELAGPLHPAMGMACEAPGLGGTYTTLTPLQHLPPLAAVADKFHQHA----AAAAV 133
F G GP+ G+ PG G + P+ P + A
Sbjct: 1188 RGFPGP-PGPIG-LQGLP-GPPGEKGENGDVGPMGPPGPPGPRGPQGPNGADGPQGPPGS 1244
Query: 134 AGAHGGHPHAHPHPAAAPPPPPPPQRLAASVSGSFTLMRDERAALASVGHLYGPYGKELP 193
G+ GG P A P PP + G R E+ G P K P
Sbjct: 1245 VGSVGGVGEKG-EPGEAGNPGPPGEAGVGGPKGE----RGEKGEAGPPGAAGPPGAKGPP 1299
Query: 194 AMGSPL-SPLPNALP--PALHGAP----------------QPPPPPPPPPLAAYGPPGHL 234
P +P P P P G P P P PP P GPPG
Sbjct: 1300 GDDGPKGNPGPVGFPGDPGPPGEPGPAGQDGVGGDKGEDGDPGQPGPPGPSGEAGPPG-- 1357
Query: 235 AGDKLLPPAAFEPHAALLGRAEDALARGLPGGGGGTGSGGAGSGSAAGLLAPLGGLAAAG 294
PP P A A A G G G G AG+ G P+G AG
Sbjct: 1358 ------PPGKRGPPGA-------AGAEGRQGEKGAKGE--AGAEGPPGKTGPVGPQGPAG 1402
Query: 295 AHGPHGGGGGPGGSGGGPSAGAAAEE 320
GP G G PG G GAA ++
Sbjct: 1403 KPGPEGLRGIPGPVGEQGLPGAAGQD 1428
Score = 47.0 bits (110), Expect = 4e-05
Identities = 85/301 (28%), Positives = 90/301 (29%), Gaps = 50/301 (16%)
Query: 36 RGLV-APGRPGLVAGMASLLDGGGGGGGGGAGGAGGAGSAGGGADFRGELAGPLHPAMGM 94
RGL A G PGL G G G G G AG AG G R GP PA
Sbjct: 1032 RGLPGAQGAPGLKGGEGPQGPPGPVGSPGERGSAGTAGPIG--LPGRPGPQGPPGPAGEK 1089
Query: 95 ACEAPGLGGTYTTLTPLQHLPPLAAVADKFHQHAAAAAVAGAHGGHPHAHPHPAAAPPP- 153
APG G P A D AG G P
Sbjct: 1090 G--APGEKG-----------PQGPAGRDGVQGPVGLPGPAGPAGSPGEDGDKGEIGEPGQ 1136
Query: 154 -----------PPPPQRLAASVSGSFTLMRDERAALASVGHLYGPYGKELPAMGSPLSPL 202
PP P L V D ++G G E A G P P
Sbjct: 1137 KGSKGDKGENGPPGPPGLQGPVGAPGIAGGDGEPGPRGQQGMFGQKGDE-GARGFPGPPG 1195
Query: 203 PNALPPALHGAPQPP-------------PPPPPPPLAAYGPPGHLAGDKLLPPAAFEPHA 249
P L G P PP PP PP P GP G A PP +
Sbjct: 1196 PIGL----QGLPGPPGEKGENGDVGPMGPPGPPGPRGPQGPNG--ADGPQGPPGSVGSVG 1249
Query: 250 ALLGRAEDALARGLPGGGGGTGSGG-AGSGSAAGLLAPLGGLAAAGAHGPHGGGGGPGGS 308
+ + E A G PG G G GG G G P G GA GP G G G
Sbjct: 1250 GVGEKGEPGEA-GNPGPPGEAGVGGPKGERGEKGEAGPPGAAGPPGAKGPPGDDGPKGNP 1308
Query: 309 G 309
G
Sbjct: 1309 G 1309
Score = 45.8 bits (107), Expect = 9e-05
Identities = 83/322 (25%), Positives = 94/322 (29%), Gaps = 54/322 (16%)
Query: 18 QAGELLSPGHARSAAAQHRGLVAPGRPGLVAGMASLLDGGGGGGGGGAGGAGGAGSAGGG 77
+AG PG + A + + L PG PG G G G GA G GA G
Sbjct: 818 RAGPTGDPGPSGQAGEKGK-LGVPGLPGY-PGRQGPKGSTGFPGFPGANGEKGARGVAGK 875
Query: 78 ADFRGELAGPLHPAMGMACEAP-GLGGTYTTLTPLQHLPPLAAVADKFHQHAAAAAVAGA 136
RG+ GP P P G G P + D G
Sbjct: 876 PGPRGQ-RGPTGPRGSRGARGPTGKPG-----------PKGTSGGDGPPGPPGERGPQGP 923
Query: 137 HGGHPHAHPHPAAAPPPPP-------PPQRLAASVSGSFTLMRDERAALASVGHLYGPYG 189
G P P P P PP P QR G + G + GP G
Sbjct: 924 QG--PVGFPGPKGPPGPPGKDGLPGHPGQRGETGFQG--------KTGPPGPGGVVGPQG 973
Query: 190 KELPAMGSPLSPLPNALPPALHGAPQPPPPPPPPPL-------AAYGPPGHLAGDKLLPP 242
P P G P PP PP L A G PG P
Sbjct: 974 -----------PTGETGPIGERGHPGPPGPPGEQGLPGAAGKEGAKGDPGPQGISGKDGP 1022
Query: 243 AAFEPHAALLGRAEDALARGLPGGGGGTGS----GGAGSGSAAGLLAPLGGLAAAGAHGP 298
A G A GL GG G G G G +AG P+G G GP
Sbjct: 1023 AGLRGFPGERGLPGAQGAPGLKGGEGPQGPPGPVGSPGERGSAGTAGPIGLPGRPGPQGP 1082
Query: 299 HGGGGGPGGSGGGPSAGAAAEE 320
G G G G G A +
Sbjct: 1083 PGPAGEKGAPGEKGPQGPAGRD 1104
Score = 45.8 bits (107), Expect = 9e-05
Identities = 81/303 (26%), Positives = 96/303 (31%), Gaps = 48/303 (15%)
Query: 41 PGRPGLVAGMASLLDGGGGGGGGGAGGAGGAGSAGGGADFRGELAGPLHPAMGMACEAPG 100
PG PG G L G G G G G G A RG P + A APG
Sbjct: 987 PGPPG-PPGEQGLPGAAGKEGAKGDPGPQGISGKDGPAGLRGF---PGERGLPGAQGAPG 1042
Query: 101 LGGTYTTLTPLQHLPPLAAVADKFHQHAAAAAVAGAHGGHPHAHPHPAAAPPPPPPPQRL 160
L G P P+ + ++ +A AG G P PP P ++
Sbjct: 1043 LKGGEGPQGPPG---PVGSPGER-----GSAGTAGPIG----LPGRPGPQGPPGPAGEKG 1090
Query: 161 AASVSGSFTLMRDERAALASVGHLYGPYGKELPA--MGSPLSPLPNAL--PPALHGAP-- 214
A G A + GP G PA GSP P G+
Sbjct: 1091 APGEKGP--------QGPAGRDGVQGPVGLPGPAGPAGSPGEDGDKGEIGEPGQKGSKGD 1142
Query: 215 --QPPPPPPPPPLAAYGPPGHLAGDKLLPPAAFEPHAALLGRAEDALARGLPGGGGGTG- 271
+ PP PP G PG GD P + + G+ D ARG PG G G
Sbjct: 1143 KGENGPPGPPGLQGPVGAPGIAGGDGEPGPRGQQ---GMFGQKGDEGARGFPGPPGPIGL 1199
Query: 272 ------------SGGAGSGSAAGLLAPLGGLAAAGAHGPHGGGGGPGGSGGGPSAGAAAE 319
+G G G P G GA GP G G G GG G E
Sbjct: 1200 QGLPGPPGEKGENGDVGPMGPPGPPGPRGPQGPNGADGPQGPPGSVGSVGGVGEKGEPGE 1259
Query: 320 EIN 322
N
Sbjct: 1260 AGN 1262
Score = 41.6 bits (96), Expect = 0.002
Identities = 57/195 (29%), Positives = 66/195 (33%), Gaps = 25/195 (12%)
Query: 141 PHAHPHPAAAPPPPPPPQRLAASVSGSFTL----MRDERAALASVGHLYGPYGKELPA-- 194
P + P+ P P S++G + E A + + GP G PA
Sbjct: 393 PTSPPNEEFGPGVPAETDITETSINGHGAYGEKGQKGEPAVVEPGMLVEGPPGPAGPAGI 452
Query: 195 MGSPLSPLPNALP--PALHGAPQPPPPP-----PPPPLAAYGPPGHLAGDKLLPPAAFEP 247
MG P P P P G P P P P PP P GD P
Sbjct: 453 MGPPGLQGPTGPPGDPGDRGPPGRPGLPGADGLPGPPGTMLMLPFRYGGDGSKGPTISAQ 512
Query: 248 HA---ALLGRAEDALA--------RGLPGGGGGTGSGGA-GSGSAAGLLAPLGGLAAAGA 295
A A+L +A AL G PG GG GS GA G G P G G
Sbjct: 513 EAQAQAILQQARIALRGPPGPMGLTGRPGPVGGPGSSGAKGESGDPGPQGPRGVQGPPGP 572
Query: 296 HGPHGGGGGPGGSGG 310
G G G PG GG
Sbjct: 573 TGKPGKRGRPGADGG 587
Score = 41.2 bits (95), Expect = 0.002
Identities = 92/332 (27%), Positives = 104/332 (31%), Gaps = 70/332 (21%)
Query: 7 SLGGLHSVAHAQAGELLSPGHARSAAAQHRGLVA-PGRPGLVAGMASLLDGGGGGGGGGA 65
S G S AQA +L AR A G + GRPG V G S G G G
Sbjct: 504 SKGPTISAQEAQAQAILQ--QARIALRGPPGPMGLTGRPGPVGGPGSSGAKGESGDPGPQ 561
Query: 66 GGAGGAGSAG--GGADFRGELAGPLHPAMGMACEAPGLGGTYTTLTPLQHLPPLAAVADK 123
G G G G G RG P PG G A D+
Sbjct: 562 GPRGVQGPPGPTGKPGKRGR------PGADGGRGMPGEPG---------------AKGDR 600
Query: 124 FHQHAAAAAVAGAHGGHPHAHPHPAAAPPPPPPPQRLAASVSGSFTLMRDERAALASVGH 183
+ G G H PP PP MR E + G
Sbjct: 601 GFD-----GLPGLPGDKGHRGERGPQGPPGPPGDDG-----------MRGEDGEIGPRG- 643
Query: 184 LYGPYGKE--LPAMGSPLSPLPNAL-----PPALHG--APQPPPPPP-----PPPLAAYG 229
L G G L G+P +P + PP G PQ P PP P P G
Sbjct: 644 LPGEAGPRGLLGPRGTPGAPGQPGMAGVDGPPGPKGNMGPQGEPGPPGQQGNPGPQGLPG 703
Query: 230 PPGHLAGDKLLPPAAFEPHAALLGRAEDALARGLPGGGGGTGSGGA-GSGSAAGLLAPLG 288
P G + PP P + + LA GLPG G G G G G L P G
Sbjct: 704 PQGPIG-----PPGEKGP------QGKPGLA-GLPGADGPPGHPGKEGQSGEKGALGPPG 751
Query: 289 GLAAAGAHGPHGGGGGPGGSGGGPSAGAAAEE 320
G GP G G G G S G E+
Sbjct: 752 PQGPIGYPGPRGVKGADGVRGLKGSKGEKGED 783
Score = 39.3 bits (90), Expect = 0.008
Identities = 46/142 (32%), Positives = 55/142 (38%), Gaps = 13/142 (9%)
Query: 185 YGPYGKELPAMGSPLSPLPNALPPALHGAPQPPPPP----PPPPLAAYGPPGHLAGDKLL 240
+G YG E G P P L + G P P P PP GPPG GD+
Sbjct: 419 HGAYG-EKGQKGEPAVVEPGML---VEGPPGPAGPAGIMGPPGLQGPTGPPGD-PGDRGP 473
Query: 241 PPAAFEPHAALLGRAEDALARGLPGGGGGTGSGG---AGSGSAAGLLAPLGGLAAAGAHG 297
P P A L + LP GG GS G + + A + +A G G
Sbjct: 474 PGRPGLPGADGLPGPPGTMLM-LPFRYGGDGSKGPTISAQEAQAQAILQQARIALRGPPG 532
Query: 298 PHGGGGGPGGSGGGPSAGAAAE 319
P G G PG GG S+GA E
Sbjct: 533 PMGLTGRPGPVGGPGSSGAKGE 554
Score = 37.4 bits (85), Expect = 0.032
Identities = 50/160 (31%), Positives = 56/160 (35%), Gaps = 36/160 (22%)
Query: 186 GPYGKELPAMGSPLSPLPNALPPALHGAPQPPPPPP-------PPPLA----AYGPPGH- 233
GP G+ P G +P P LP PQ P PP P LA A GPPGH
Sbjct: 682 GPQGEPGPP-GQQGNPGPQGLP-----GPQGPIGPPGEKGPQGKPGLAGLPGADGPPGHP 735
Query: 234 ----LAGDK--LLPPAAFEP--HAALLGRAEDALARGLPGGGGGTGSGG----------A 275
+G+K L PP P + G RGL G G G G
Sbjct: 736 GKEGQSGEKGALGPPGPQGPIGYPGPRGVKGADGVRGLKGSKGEKGEDGFPGFKGDMGLK 795
Query: 276 GSGSAAGLLAPLGGLAAAGAHGPHGGGGGPGGSGGGPSAG 315
G G + P G G G G G PG SG G
Sbjct: 796 GDRGEVGQIGPRGEDGPEGPKGRAGPTGDPGPSGQAGEKG 835
Score = 35.0 bits (79), Expect = 0.16
Identities = 50/185 (27%), Positives = 54/185 (29%), Gaps = 39/185 (21%)
Query: 139 GHPHAHPHPAAAPPPPPP------PQRLAASVSGSFTLMRDERAALASVGH----LYGPY 188
G P P A P PP P R S T+ E A A + L GP
Sbjct: 472 GPPGRPGLPGADGLPGPPGTMLMLPFRYGGDGSKGPTISAQEAQAQAILQQARIALRGPP 531
Query: 189 GKELPAMGSPLSPLPNALPPALHGAPQPPPPPPPPPLAAYGPPGHLAGDKLLPPAAFEPH 248
G MG P P P + + P P P GPPG
Sbjct: 532 GP----MGLTGRPGPVGGPGSSGAKGESGDPGPQGPRGVQGPPGPTGKPG---------- 577
Query: 249 AALLGRAEDALARGLPGGGGGTG----SGGAGSGSAAGLLAPLGGLAAAGAHGPHGGGGG 304
RG PG GG G G G GL G G GP G G
Sbjct: 578 -----------KRGRPGADGGRGMPGEPGAKGDRGFDGLPGLPGDKGHRGERGPQGPPGP 626
Query: 305 PGGSG 309
PG G
Sbjct: 627 PGDDG 631
>gi|111118974 collagen, type II, alpha 1 isoform 2 precursor [Homo
sapiens]
Length = 1418
Score = 63.5 bits (153), Expect = 4e-10
Identities = 79/271 (29%), Positives = 91/271 (33%), Gaps = 42/271 (15%)
Query: 69 GGAGSAGGGADFRGELAGPLHPAMGMACEAPGLGGTYTTLTPLQHLPPLAAVADKFHQHA 128
G G G D + ++ GP P PG G P P DK + A
Sbjct: 32 GPKGQKGEPGDIK-DIVGPKGP--------PGPQG------PAGEQGPRGDRGDKGEKGA 76
Query: 129 AAAAVAGAHGGHPHAHPHPAAAPPPPPPPQ---RLAASVSGSFTLMRDERAALASVGHLY 185
G P +P P P PP PP AA ++G F DE+A A +G +
Sbjct: 77 PGPRGRDGEPGTP-GNPGPPGPPGPPGPPGLGGNFAAQMAGGF----DEKAGGAQLGVMQ 131
Query: 186 GPYGKELPAMGSPLSPLPNALPPALHGAPQPPPPP----PPPPLAAYGPPGHLAGDKLLP 241
GP G P P P P G P P P P P GPPG D
Sbjct: 132 GPMGPMGPR--GPPGPAGAPGPQGFQGNPGEPGEPGVSGPMGPRGPPGPPGKPGDDG--- 186
Query: 242 PAAFEPHAALLGRAEDALARGLPGGGGGTG----------SGGAGSGSAAGLLAPLGGLA 291
A A G ARG PG G G G G A G+ G
Sbjct: 187 EAGKPGKAGERGPPGPQGARGFPGTPGLPGVKGHRGYPGLDGAKGEAGAPGVKGESGSPG 246
Query: 292 AAGAHGPHGGGGGPGGSGGGPSAGAAAEEIN 322
G+ GP G G PG G AGAA N
Sbjct: 247 ENGSPGPMGPRGLPGERGRTGPAGAAGARGN 277
Score = 55.1 bits (131), Expect = 1e-07
Identities = 91/343 (26%), Positives = 108/343 (31%), Gaps = 67/343 (19%)
Query: 15 AHAQAGELLSPGHARSAAAQHRGLVAPGRPGLVAGMASLLDGGGGGGGGGAGGAGGAGSA 74
A+ + GE+ PG A SA A RG APG G G G G G G G A
Sbjct: 730 ANGEKGEVGPPGPAGSAGA--RG--APGERGETGPPGPAGFAGPPGADGQPGAKGEQGEA 785
Query: 75 GGGADFRGELAGPLHPAMGMACEAPGLGGTYTTLTPLQHLPPLAAVADKFHQHAAAAAVA 134
G D GP P+ APG G P P A + A A
Sbjct: 786 GQKGD--AGAPGPQGPS-----GAPGPQG------PTGVTGPKGARGAQGPPGATGFPGA 832
Query: 135 GAHGGHPHAHPHPAAAPPPPPPPQRLAASVSGSFTLMRDERAALASVGHLYGPYGKE--- 191
G P ++ +P PP PP P RA + GP G++
Sbjct: 833 AGRVGPPGSNGNPG--PPGPPGPSGKDGPKGARGDSGPPGRAGEPGLQGPAGPPGEKGEP 890
Query: 192 -------------------------LPAM----GSPLSPLPNALP-----PALHGAPQPP 217
LP G P P P+ P P G PP
Sbjct: 891 GDDGPSGAEGPPGPQGLAGQRGIVGLPGQRGERGFPGLPGPSGEPGKQGAPGASGDRGPP 950
Query: 218 PPPPPPPLAA-YGPPGHLAGDKLLPPAAFEPHAALLGRAEDALARGLPGGGGGTGS---- 272
P PP L G PG P + A + G + A G PG G GS
Sbjct: 951 GPVGPPGLTGPAGEPGREGSPGADGPPGRDGAAGVKGDRGETGAVGAPGAPGPPGSPGPA 1010
Query: 273 ------GGAGSGSAAGLLAPLGGLAAAGAHGPHGGGGGPGGSG 309
G G A G + P G A G GP G G G +G
Sbjct: 1011 GPTGKQGDRGEAGAQGPMGPSGPAGARGIQGPQGPRGDKGEAG 1053
Score = 53.9 bits (128), Expect = 3e-07
Identities = 87/304 (28%), Positives = 100/304 (32%), Gaps = 48/304 (15%)
Query: 41 PGRPGLVAGMASLLDGGGGGGGGGAGGAGGAGSAG-----GGADFRGELAGPLHPAMGMA 95
PG PGL G G G G +G G G G RG+ P A
Sbjct: 482 PGEPGLPGARGLTGRPGDAGPQGKVGPSGAPGEDGRPGPPGPQGARGQPGVMGFPGPKGA 541
Query: 96 CEAPGLGGTYTTLTPLQHLPPLAAVADKFHQHAAA-----AAVAGAHG--GHPHAHPHPA 148
PG G L P L + K + AA A AG G G P
Sbjct: 542 NGEPGKAGE----KGLPGAPGLRGLPGKDGETGAAGPPGPAGPAGERGEQGAPGPSGFQG 597
Query: 149 AAPPPPPPPQRLAASVSGSFTLMRDERAALASVGHLYGPYGKELPAMGSPLSPLPNAL-- 206
PP PP + G A L GP G E G SP L
Sbjct: 598 LPGPPGPPGEGGKPGDQGV--------PGEAGAPGLVGPRG-ERGFPGERGSPGAQGLQG 648
Query: 207 PPALHGAPQPPPPP----PPPPLAAYGPPG--HLAGDKLLPPAAFEPHAALLGRAEDALA 260
P L G P P P P A GPPG + G++ G A A
Sbjct: 649 PRGLPGTPGTDGPKGASGPAGPPGAQGPPGLQGMPGER--------------GAAGIAGP 694
Query: 261 RGLPGGGGGTGSGGA-GSGSAAGLLAPLGGLAAAGAHGPHGGGGGPGGSGGGPSAGAAAE 319
+G G G G GA G GL P+G AGA+G G G PG +G + GA E
Sbjct: 695 KGDRGDVGEKGPEGAPGKDGGRGLTGPIGPPGPAGANGEKGEVGPPGPAGSAGARGAPGE 754
Query: 320 EINT 323
T
Sbjct: 755 RGET 758
Score = 50.8 bits (120), Expect = 3e-06
Identities = 87/309 (28%), Positives = 97/309 (31%), Gaps = 26/309 (8%)
Query: 20 GELLSPGHARSAAAQ-HRGLVAPGRPGLVAGMASLLDGGGGGGGGGAGGAGGAGSAGGGA 78
GE G A +A A+ + G P P G A G G G G GA G
Sbjct: 261 GERGRTGPAGAAGARGNDGQPGPAGPPGPVGPAGGPGFPGAPGAKGEAGPTGARGPEGAQ 320
Query: 79 DFRGELAGPLHPAMGMACEAPGLGGTYTTLTPLQHLPPLAAVADKFHQHAAAAAVAGAHG 138
RGE P P A PG G +P A A +AGA G
Sbjct: 321 GPRGEPGTPGSPGPAGASGNPGTDG----------IPGAKG-------SAGAPGIAGAPG 363
Query: 139 -GHPHAHPHPAAAPPPPPPPQRLAASVSGSFTLMRDERAALASVG--HLYGPYGKE--LP 193
P P P A P P + F + + G GP G+E
Sbjct: 364 FPGPRGPPGPQGATGPLGPKGQTGEPGIAGFKGEQGPKGEPGPAGPQGAPGPAGEEGKRG 423
Query: 194 AMGSPLSPLPNALPPALHGAPQPPPPPPPPPLAA-YGPPGHLAGDKLLPPAAFEPHAALL 252
A G P P PP GAP P LA G PG L P
Sbjct: 424 ARGEPGGVGPIG-PPGERGAPGNRGFPGQDGLAGPKGAPGERGPSGLAGPKGANGDPGRP 482
Query: 253 GRAEDALARGLPGGGGGTG-SGGAGSGSAAGLLAPLGGLAAAGAHGPHGGGGGPGGSGGG 311
G ARGL G G G G G A G G GA G G G PG G
Sbjct: 483 GEPGLPGARGLTGRPGDAGPQGKVGPSGAPGEDGRPGPPGPQGARGQPGVMGFPGPKGAN 542
Query: 312 PSAGAAAEE 320
G A E+
Sbjct: 543 GEPGKAGEK 551
Score = 47.4 bits (111), Expect = 3e-05
Identities = 78/285 (27%), Positives = 91/285 (31%), Gaps = 48/285 (16%)
Query: 41 PGRPGLVAGMASLLDGGGGGGGGGAGGAGGAGSAG-----GGADFRGELAGPLHPAMGMA 95
PG PG+ M G G G G AG G AG G RG P P +
Sbjct: 161 PGEPGVSGPMGPRGPPGPPGKPGDDGEAGKPGKAGERGPPGPQGARGFPGTPGLPGVKGH 220
Query: 96 CEAPGLGGTYTTLTPLQHLPPLAAVADKFHQHAAAAAVAGAHGGHPHAHPHPAAAPPPPP 155
PGL G A A V G G P + P P
Sbjct: 221 RGYPGLDGA--------------------KGEAGAPGVKG-ESGSPGENGSPGPMGPRGL 259
Query: 156 PPQRLAASVSGSFTLMRDERAALASVGHLYGPYGKELPAMGSPLSPLPNALPPALHGAPQ 215
P +R R A G G+ PA P P+ A P GAP
Sbjct: 260 PGER--------------GRTGPAGAAGARGNDGQPGPA--GPPGPVGPAGGPGFPGAPG 303
Query: 216 PPPPPPPPPLAAYGPPGHLAGDKLLPPAAFEPHAALLGRAEDALARGLPGGGGGTGSGG- 274
P A GP G G + P P A G + + G+PG G G+ G
Sbjct: 304 AKGEAGPT--GARGPEG-AQGPRGEPGTPGSPGPA--GASGNPGTDGIPGAKGSAGAPGI 358
Query: 275 AGSGSAAGLLAPLGGLAAAGAHGPHGGGGGPGGSGGGPSAGAAAE 319
AG+ G P G A G GP G G PG +G G E
Sbjct: 359 AGAPGFPGPRGPPGPQGATGPLGPKGQTGEPGIAGFKGEQGPKGE 403
Score = 42.4 bits (98), Expect = 0.001
Identities = 83/283 (29%), Positives = 94/283 (33%), Gaps = 32/283 (11%)
Query: 42 GRPGLVAGMASLLDGGGGGGGGGAGGAGGAGSAGGGADFRGELAGPLHPAMGMACEA--P 99
G PGL G A G G G GA G G A RG + P G E P
Sbjct: 873 GEPGL-QGPAGPPGEKGEPGDDGPSGAEGPPGPQGLAGQRGIVGLP-----GQRGERGFP 926
Query: 100 GLGGTYTTLTPLQHLPPLAAVADKFHQHAAAAAVAGAHGGHPHAHPHPAAAPPPPPPPQR 159
GL G + P + P A D+ G P P A PP +
Sbjct: 927 GLPGP--SGEPGKQGAP-GASGDRGPPGPVGPPGLTGPAGEPGREGSPGA---DGPPGRD 980
Query: 160 LAASVSGSFTLMRDERAALASVGHLYGPYGKELPAMGSPLSPLPNALPPALHGAPQPPPP 219
AA V G R E A+ + G GP P P P GA P P
Sbjct: 981 GAAGVKGD----RGETGAVGAPG-APGP-----PGSPGPAGPTGKQGDRGEAGAQGPMGP 1030
Query: 220 PPPPPLAAYGPPGHLAGDKLLPPAAFEP-HAALLGRAEDALARGLPGGGGGTG----SGG 274
P P GDK A EP L G +GLPG G +G SG
Sbjct: 1031 SGPAGARGIQGPQGPRGDK---GEAGEPGERGLKGHRGFTGLQGLPGPPGPSGDQGASGP 1087
Query: 275 AGSGSAAGLLAPLGGLAAAGAHGPHGGGGGPGGSGGGPSAGAA 317
AG G P+G GA+G G G PG G G A
Sbjct: 1088 AGPSGPRGPPGPVGPSGKDGANGIPGPIGPPGPRGRSGETGPA 1130
Score = 42.0 bits (97), Expect = 0.001
Identities = 93/322 (28%), Positives = 108/322 (33%), Gaps = 62/322 (19%)
Query: 42 GRPGLVAGMASLLDGGGGGGGGGAGGAGGAGSAGGGADFRGE--LAGPLHPAMGMACEAP 99
G PG AG G GG G G G A G F G+ LAGP AP
Sbjct: 411 GAPG-PAGEEGKRGARGEPGGVGPIGPPGERGAPGNRGFPGQDGLAGPKG--------AP 461
Query: 100 GLGGTYTTLTPLQHLPPLAAVADKFHQHAAAAAVAGAHG-------GHPHAHPHPAAAP- 151
G G P P A D + GA G P P+ AP
Sbjct: 462 GERG------PSGLAGPKGANGDP--GRPGEPGLPGARGLTGRPGDAGPQGKVGPSGAPG 513
Query: 152 ----PPPPPPQ--RLAASVSGSFTLMRDERAALASVGH--------LYGPYGK--ELPAM 195
P PP PQ R V G F + G L G GK E A
Sbjct: 514 EDGRPGPPGPQGARGQPGVMG-FPGPKGANGEPGKAGEKGLPGAPGLRGLPGKDGETGAA 572
Query: 196 GSPLSPLPNALPPALHGAPQPPP----PPPPPPLAAYGPPGHLAGDKLLPPAAFEPHAAL 251
G P P A GAP P P PP P G PG D+ +P A P L
Sbjct: 573 GPP-GPAGPAGERGEQGAPGPSGFQGLPGPPGPPGEGGKPG----DQGVPGEAGAP--GL 625
Query: 252 LGRAEDALARGLPGGGGGTGSGGA----GSGSAAGLLAPLGGLAAAGAHGPHGGGGGPGG 307
+G + RG PG G G+ G G G P G AG G G G G
Sbjct: 626 VGPRGE---RGFPGERGSPGAQGLQGPRGLPGTPGTDGPKGASGPAGPPGAQGPPGLQGM 682
Query: 308 SGGGPSAGAAAEEINTKEVAQR 329
G +AG A + + +V ++
Sbjct: 683 PGERGAAGIAGPKGDRGDVGEK 704
>gi|4502951 collagen type III alpha 1 preproprotein [Homo sapiens]
Length = 1466
Score = 63.5 bits (153), Expect = 4e-10
Identities = 83/289 (28%), Positives = 91/289 (31%), Gaps = 37/289 (12%)
Query: 41 PGRPGLVAGMASLLDGGGGGGGGGAGGAGGAGSAG--GGADFRGELAGPLHPAMGMACEA 98
PG+ G G GG G G G G G G GE P P A
Sbjct: 608 PGKNGETGPQGPPGPTGPGGDKGDTGPPGPQGLQGLPGTGGPPGENGKPGEPGPKGDAGA 667
Query: 99 PGL-GGTYTTLTPLQHLPPLAAVADKFHQHAAAAAVAGAHGGHPHAHPHPAAAPPPPPPP 157
PG GG P + PP A A A G G AA PP PP
Sbjct: 668 PGAPGGKGDAGAPGERGPPGLAGAPGLRGGAGPPGPEGGKG----------AAGPPGPPG 717
Query: 158 QRLAASVSGSFTLMRDERAALASVG------HLYGPYGKELPAMGSPLSPLPNALPPALH 211
+ G M ER L S G GP +P P P PP
Sbjct: 718 AAGTPGLQG----MPGERGGLGSPGPKGDKGEPGGPGADGVPGKDGPRGPTGPIGPPGPA 773
Query: 212 GAP----QPPPPPPPPPLAAYGPPGHLAGDKLLPPAAFEPHAALLGRAEDALARGLPGGG 267
G P + P P G PG PA F G PGG
Sbjct: 774 GQPGDKGEGGAPGLPGIAGPRGSPGERGETGPPGPAGFPGAPG---------QNGEPGGK 824
Query: 268 GGTGSGGA-GSGSAAGLLAPLGGLAAAGAHGPHGGGGGPGGSGGGPSAG 315
G G+ G G G G+ P GG AG GP G G G GG +AG
Sbjct: 825 GERGAPGEKGEGGPPGVAGPPGGSGPAGPPGPQGVKGERGSPGGPGAAG 873
Score = 57.8 bits (138), Expect = 2e-08
Identities = 92/332 (27%), Positives = 111/332 (33%), Gaps = 38/332 (11%)
Query: 18 QAGELLSPGHARSAAAQHRGLVAPGRPGLVAGMASLLDGGGGGGGGGAGGAGGAGSAG-- 75
+ GE PG A A + G PG + + G GG G AG GG+G AG
Sbjct: 799 ERGETGPPGPAGFPGAPGQN----GEPGGKGERGAPGEKGEGGPPGVAGPPGGSGPAGPP 854
Query: 76 GGADFRGELAGPLHPAMGMACEAPGLGGTY-TTLTPLQHLPPLAAVADKFHQHAAAAAVA 134
G +GE P P A GL G + P P + D A
Sbjct: 855 GPQGVKGERGSPGGPGAAGFPGARGLPGPPGSNGNPGPPGPSGSPGKDGPPGPAGNTGAP 914
Query: 135 GAHG--------GHPHAHPHPAAAPPPPPPPQRLAASVSGSFTLMRDERAALASVGHLYG 186
G+ G G P P A PP P A ++G+ LA + G
Sbjct: 915 GSPGVSGPKGDAGQPGEKGSPGAQGPPGAPGPLGIAGITGA--------RGLAGPPGMPG 966
Query: 187 PYGKELPAMGSPLSPLPNALPPALHGAPQPPPPPPPPPLAAY-GPPGHLA--GDKLLPPA 243
P G P S P A L G PP P P LA G PG G LP
Sbjct: 967 PRGSPGPQGVKGESGKPGA--NGLSGERGPPGPQGLPGLAGTAGEPGRDGNPGSDGLPGR 1024
Query: 244 AFEPHAALLGRAEDALARGLPGGGGGTGSGGAGSGSAAGLLAPLGGLAAAGAHGPHGGGG 303
P G D G PG G G G G + P G G GP G G
Sbjct: 1025 DGSP-----GGKGDRGENGSPGAPGAPGHPGP-----PGPVGPAGKSGDRGESGPAGPAG 1074
Query: 304 GPGGSGGGPSAGAAAEEINTKEVAQRITAELK 335
PG +G + G + E +R A +K
Sbjct: 1075 APGPAGSRGAPGPQGPRGDKGETGERGAAGIK 1106
Score = 53.5 bits (127), Expect = 4e-07
Identities = 84/310 (27%), Positives = 106/310 (34%), Gaps = 24/310 (7%)
Query: 20 GELLSPGHARSAAAQHRGLVAPGRPGLVAGMASLLDGGGGGGGGGAGGAGGAGSAG--GG 77
G + PG A + G APG PG+ S + G G G AG G G G GG
Sbjct: 765 GPIGPPGPAGQPGDKGEG-GAPGLPGIAGPRGSPGERGETGPPGPAGFPGAPGQNGEPGG 823
Query: 78 ADFRGELAGPLHPAMGMACEAPGLGGTYTTLTPLQHLPPLAAVADKFHQHA-AAAAVAGA 136
+GE P G PG+ G P P ++ AA GA
Sbjct: 824 ---KGERGAPGEKGEG---GPPGVAGPPGGSGPAGPPGPQGVKGERGSPGGPGAAGFPGA 877
Query: 137 HG--GHPHAHPHPAAAPPPPPPPQRLAASVSGSFTLMRDERAALASVGHLYGPYGKELP- 193
G G P ++ +P P P + +G+ T G P K P
Sbjct: 878 RGLPGPPGSNGNPGPPGPSGSPGKDGPPGPAGN-TGAPGSPGVSGPKGDAGQPGEKGSPG 936
Query: 194 AMGSPLSPLPNALPPALHGAPQPPPPPPPPPLAAYGPPGHLAGDKLLPPAAFEPHAALLG 253
A G P +P P + PP P P + GP G + G+ P A L G
Sbjct: 937 AQGPPGAPGPLGIAGITGARGLAGPPGMPGPRGSPGPQG-VKGESGKPGA-----NGLSG 990
Query: 254 RAEDALARGLPGGGGGTG----SGGAGSGSAAGLLAPLGGLAAAGAHGPHGGGGGPGGSG 309
+GLPG G G G GS G GG G +G G G PG G
Sbjct: 991 ERGPPGPQGLPGLAGTAGEPGRDGNPGSDGLPGRDGSPGGKGDRGENGSPGAPGAPGHPG 1050
Query: 310 GGPSAGAAAE 319
G A +
Sbjct: 1051 PPGPVGPAGK 1060
Score = 52.0 bits (123), Expect = 1e-06
Identities = 89/311 (28%), Positives = 104/311 (33%), Gaps = 56/311 (18%)
Query: 42 GRPGLVAGMASLLDGGGGGGGGGAGGAGGAGSAG--GGADFRGELAGPLHP----AMGMA 95
GRPGL + + G G G G G G+AG G +GE+ P A G
Sbjct: 309 GRPGLPGAAGARGNDGARGSDGQPGPPGPPGTAGFPGSPGAKGEVGPAGSPGSNGAPGQR 368
Query: 96 CEAPGLGGTYTTLTPLQHLPPLAAVADKFHQHAAAAAVAGAHG-GHPHAHPHPAAAPPPP 154
E PG G P PP + A + GA G P PA A P
Sbjct: 369 GE-PGPQGHAGAQGPPG--PPGINGSPGGKGEMGPAGIPGAPGLMGARGPPGPAGANGAP 425
Query: 155 -------PPPQRLAASVSGSFTLMRDER--AALASVGHLYGPYGKELPAMGSPLSPLPNA 205
P + A G R ER A + V G GK+ GSP P N
Sbjct: 426 GLRGGAGEPGKNGAKGEPGP----RGERGEAGIPGVPGAKGEDGKD----GSPGEPGANG 477
Query: 206 LPPALHGAPQPPPPPPPPPLAAYGPPGHLAGDKLLPPAAFEPHAALLGRAEDALA----- 260
LP A P P P G G AG++ P A P A D +
Sbjct: 478 LPGAAGERGAPGFRGPAGPNGIPGEKGP-AGERGAPGPA-GPRGAAGEPGRDGVPGGPGM 535
Query: 261 RGLPGGGGGTGSGGA----------------------GSGSAAGLLAPLGGLAAAGAHGP 298
RG+PG GG GS G G G P G A G +G
Sbjct: 536 RGMPGSPGGPGSDGKPGPPGSQGESGRPGPPGPSGPRGQPGVMGFPGPKGNDGAPGKNGE 595
Query: 299 HGGGGGPGGSG 309
GG GGPG G
Sbjct: 596 RGGPGGPGPQG 606
Score = 50.8 bits (120), Expect = 3e-06
Identities = 95/336 (28%), Positives = 107/336 (31%), Gaps = 72/336 (21%)
Query: 40 APGRPGLVAGMASLLDGGGGGGGGGAGGAGGAGSAG--GGADFRGELAGPLHPA-----M 92
APG PG + + G G G G GGAG G GG G GP A
Sbjct: 667 APGAPGGKGDAGAPGERGPPGLAGAPGLRGGAGPPGPEGGKGAAGP-PGPPGAAGTPGLQ 725
Query: 93 GMACEAPGLG-----------------------GTYTTLTPLQHLPPLAAVADKFHQHAA 129
GM E GLG G P+ P DK
Sbjct: 726 GMPGERGGLGSPGPKGDKGEPGGPGADGVPGKDGPRGPTGPIGPPGPAGQPGDK--GEGG 783
Query: 130 AAAVAGAHGGHPHAHPHPAAAPPPPPPPQRLAASVSGSFTLMRDERAALASVGH-----L 184
A + G G P P PP P A + ER A G +
Sbjct: 784 APGLPGIAG--PRGSPGERGETGPPGPAGFPGAPGQNGEPGGKGERGAPGEKGEGGPPGV 841
Query: 185 YGPYGKELPA-----------MGSPLSP----LPNAL----PPALHGAPQPPPPPPPPPL 225
GP G PA GSP P P A PP +G P PP P P
Sbjct: 842 AGPPGGSGPAGPPGPQGVKGERGSPGGPGAAGFPGARGLPGPPGSNGNPGPPGPSGSP-- 899
Query: 226 AAYGPPGHLAGDKLLP--PAAFEPHAALLGRAEDALARGLPGGGGGTGSGG----AGSGS 279
GPPG AG+ P P P G A +G PG G G+ G AG
Sbjct: 900 GKDGPPGP-AGNTGAPGSPGVSGPK----GDAGQPGEKGSPGAQGPPGAPGPLGIAGITG 954
Query: 280 AAGLLAPLGGLAAAGAHGPHGGGGGPGGSGGGPSAG 315
A GL P G G+ GP G G G G +G
Sbjct: 955 ARGLAGPPGMPGPRGSPGPQGVKGESGKPGANGLSG 990
Score = 50.4 bits (119), Expect = 4e-06
Identities = 91/337 (27%), Positives = 105/337 (31%), Gaps = 84/337 (24%)
Query: 20 GELLSPGHARSAAAQH-RGLVAPGRPGLVAGMASLLDGGGGGGGGGAGGAGGAGSAG--G 76
GE SPG +A RGL PG PG G G G G AG G+ G G
Sbjct: 861 GERGSPGGPGAAGFPGARGL--PGPPGSNGNPGPPGPSGSPGKDGPPGPAGNTGAPGSPG 918
Query: 77 GADFRGELAGPLHPAMGMACEAPGLGGTYTTLTPLQHLPPLAAVADKFHQHAAAAAVAGA 136
+ +G+ P A PG G PL A + GA
Sbjct: 919 VSGPKGDAGQPGEKGSPGAQGPPGAPG------------PLGI-----------AGITGA 955
Query: 137 HG-GHPHAHPHPAAAPPP--------------------PPPPQRLAASVSGSFTLMRDER 175
G P P P +P P PP PQ L + RD
Sbjct: 956 RGLAGPPGMPGPRGSPGPQGVKGESGKPGANGLSGERGPPGPQGLPGLAGTAGEPGRDGN 1015
Query: 176 AALASV-GHLYGPYGK-ELPAMGSPLSPLPNALPPALHGAPQPPPPP------------- 220
+ G P GK + GSP +P GAP P PP
Sbjct: 1016 PGSDGLPGRDGSPGGKGDRGENGSPGAP----------GAPGHPGPPGPVGPAGKSGDRG 1065
Query: 221 ---PPPPLAAYGPPGHLAGDKLLPPAAFEPHAALLGRAEDALARGLPGGGGGTGSGGAGS 277
P P A GP G P + G A RG PG G GS G
Sbjct: 1066 ESGPAGPAGAPGPAGSRGAPGPQGPRGDKGETGERGAAGIKGHRGFPGNPGAPGSPGP-- 1123
Query: 278 GSAAGLLAPLGGLAAAGAHGPHGGGGGPG--GSGGGP 312
AG +G AG GP G G PG G+ G P
Sbjct: 1124 ---AGQQGAIGSPGPAGPRGPVGPSGPPGKDGTSGHP 1157
Score = 49.7 bits (117), Expect = 6e-06
Identities = 89/310 (28%), Positives = 103/310 (33%), Gaps = 48/310 (15%)
Query: 40 APGRPGLVAGMASLLDGGGGGGGGGAGGAGGAGSAGGGADFRGELAGPLHPAMGMACEAP 99
+PG PG G G G G G +G AG GE P P P
Sbjct: 193 SPGSPGYQGPPGEPGQAGPSGPPGPPGAIGPSGPAGKD----GESGRPGRPGERGLPGPP 248
Query: 100 GLGGTYTTLTPLQHLPPLAAVADKFHQHAAAAAVAGAHG-----GHPHAHPHPAAAPPPP 154
G+ G + P + F GA G G P + P P
Sbjct: 249 GIKGP----AGIPGFPGMKGHRG-FDGRNGEKGETGAPGLKGENGLPGENGAPGPMGPRG 303
Query: 155 PPPQRLAASVSGSFTLMRDERAALASVGHLYGPYGKELPAMGSPLSP-----LPNALPPA 209
P +R + G+ R A S G GP G A G P SP + A P
Sbjct: 304 APGERGRPGLPGAAGA-RGNDGARGSDGQP-GPPGPPGTA-GFPGSPGAKGEVGPAGSPG 360
Query: 210 LHGAP-QPPPPPPPPPLAAYGPPG------HLAGDKLLPPAAFEPHAALLGRAEDALARG 262
+GAP Q P P A GPPG G + PA L+G ARG
Sbjct: 361 SNGAPGQRGEPGPQGHAGAQGPPGPPGINGSPGGKGEMGPAGIPGAPGLMG------ARG 414
Query: 263 LPGGGGGTGS----GGAGS---GSAAGLLAPLGGLAAAG------AHGPHGGGGGPGGSG 309
PG G G+ GGAG A G P G AG A G G G PG G
Sbjct: 415 PPGPAGANGAPGLRGGAGEPGKNGAKGEPGPRGERGEAGIPGVPGAKGEDGKDGSPGEPG 474
Query: 310 GGPSAGAAAE 319
GAA E
Sbjct: 475 ANGLPGAAGE 484
Score = 49.3 bits (116), Expect = 8e-06
Identities = 74/270 (27%), Positives = 84/270 (31%), Gaps = 62/270 (22%)
Query: 58 GGGGGGGAGGAGGAGSAGGGADFRGELAGPLHPAMGMACEAPGLGGTYTTLTPLQHLPPL 117
G G G G GA A G RG P P PG G + P
Sbjct: 303 GAPGERGRPGLPGAAGARGNDGARGSDGQPGPPGPPGTAGFPGSPGAKGEVGP------- 355
Query: 118 AAVADKFHQHAAAAAVAGAHG--GHPHAHPHPAAAPPPPPPPQRLAASVSGSFTLMRDER 175
A + GA G G P H A PP PP ++GS
Sbjct: 356 ----------AGSPGSNGAPGQRGEPGPQGHAGAQGPPGPP------GINGS-------- 391
Query: 176 AALASVGHLYGPYGK-ELPAMGSPLSPLPNALPPALHGAPQPPPPP----PPPPLAAYGP 230
P GK E+ G P +P L GA PP P P G
Sbjct: 392 -----------PGGKGEMGPAGIPGAP-------GLMGARGPPGPAGANGAPGLRGGAGE 433
Query: 231 PGHLAGDKLLPPAAFEPHAALLG----RAEDALARGLPGGGGGTG-SGGAGSGSAAGLLA 285
PG P A + G + ED G PG G G G AG A G
Sbjct: 434 PGKNGAKGEPGPRGERGEAGIPGVPGAKGEDG-KDGSPGEPGANGLPGAAGERGAPGFRG 492
Query: 286 PLGGLAAAGAHGPHGGGGGPGGSGGGPSAG 315
P G G GP G G PG +G +AG
Sbjct: 493 PAGPNGIPGEKGPAGERGAPGPAGPRGAAG 522
Score = 48.5 bits (114), Expect = 1e-05
Identities = 77/287 (26%), Positives = 88/287 (30%), Gaps = 83/287 (28%)
Query: 55 DGGGGGGGGGAGGAGGAGSAGGGADFRGELAGPLHPAMGMACEAPGLGGTYTTLTPLQHL 114
+G G G G G G G G+ P P CE+ G P +
Sbjct: 100 NGQGPQGPKGDPGPPGIPGRNGDPGIPGQPGSPGSPGPPGICESCPTG-------PQNYS 152
Query: 115 PPLAAVADKFHQHAAAAAVAGAHGGHPHAHPHPAAAPPPPPPPQRLAASVSGSFTLMRDE 174
P + K + AV G G +P PA P PP PP
Sbjct: 153 PQYDSYDVK-----SGVAVGGLAG-----YPGPAGPPGPPGPP----------------- 185
Query: 175 RAALASVGHLYGPYGKELPAMGSPLSPLPNALPPALHGAPQPPPPPPPPPLAAYGPPGHL 234
+ GH GSP SP PP G P PP PP A GP G
Sbjct: 186 ----GTSGH-----------PGSPGSPGYQG-PPGEPGQAGPSGPPGPP--GAIGPSG-- 225
Query: 235 AGDKLLPPAAFEPHAALLGRAEDALARGLPGGGGGTGSGGA------------------- 275
PA + + GR + RGLPG G G G
Sbjct: 226 -------PAGKDGESGRPGRPGE---RGLPGPPGIKGPAGIPGFPGMKGHRGFDGRNGEK 275
Query: 276 GSGSAAGLLAPLGGLAAAGAHGPHGGGGGPGGSGGGPSAGAAAEEIN 322
G A GL G GA GP G G PG G GAA N
Sbjct: 276 GETGAPGLKGENGLPGENGAPGPMGPRGAPGERGRPGLPGAAGARGN 322
Score = 46.2 bits (108), Expect = 7e-05
Identities = 92/336 (27%), Positives = 102/336 (30%), Gaps = 69/336 (20%)
Query: 19 AGELLSPGHA--RSAAAQHRGLVAPGRPGLVAGMASLLDGGGGGGGGGAGGAGGAGSAG- 75
AGE +PG A R AA + PG PG+ GM GG G G G G G +G
Sbjct: 506 AGERGAPGPAGPRGAAGEPGRDGVPGGPGM-RGMPG--SPGGPGSDGKPGPPGSQGESGR 562
Query: 76 ----GGADFRGE-----LAGPL--HPAMGMACEAPGLGGTYTTLTPLQHLPPLAAVADKF 124
G + RG+ GP A G E G GG P PP
Sbjct: 563 PGPPGPSGPRGQPGVMGFPGPKGNDGAPGKNGERGGPGG------PGPQGPP-------- 608
Query: 125 HQHAAAAAVAGAHGGHPHAHPHPAAAPPPPPPPQRLAASVSGSFTLMRD----ERAALAS 180
G G P PP PQ L + E
Sbjct: 609 ----GKNGETGPQGPPGPTGPGGDKGDTGPPGPQGLQGLPGTGGPPGENGKPGEPGPKGD 664
Query: 181 VGHLYGPYGKELPAMGSPLSPLPNALPPALHGAPQPPPP--------PPPPPLAA----- 227
G P GK P A P L G PP P PP PP AA
Sbjct: 665 AGAPGAPGGKGDAGAPGERGPPGLAGAPGLRGGAGPPGPEGGKGAAGPPGPPGAAGTPGL 724
Query: 228 YGPPGHLAGDKLLPPAAFEPHAALLGRAEDALARGLPGGGGGTGSGGAGSGSAAGLLAPL 287
G PG G LG +G PGG G G G G P+
Sbjct: 725 QGMPGERGG---------------LGSPGPKGDKGEPGGPGADGV--PGKDGPRGPTGPI 767
Query: 288 GGLAAAGAHGPHGGGGGPGGSGGGPSAGAAAEEINT 323
G AG G G GG PG G G+ E T
Sbjct: 768 GPPGPAGQPGDKGEGGAPGLPGIAGPRGSPGERGET 803
Score = 43.9 bits (102), Expect = 3e-04
Identities = 85/300 (28%), Positives = 97/300 (32%), Gaps = 72/300 (24%)
Query: 20 GELLSPGHARSAAAQHRGLVAP-GRPGLVAGMASLLDGGGGGGGGGAGGAGGAGSAGGGA 78
GE PG + + RG P G PGL AG A + G G G G G GS GG
Sbjct: 978 GESGKPG--ANGLSGERGPPGPQGLPGL-AGTAG--EPGRDGNPGSDGLPGRDGSPGGKG 1032
Query: 79 DFRGELAGPLHPAMGMACEAPGLGGTYTTLTPLQHLPPLAAVADKFHQHAAAAAVAGAHG 138
D RGE P P APG G P + P D+ + A AGA G
Sbjct: 1033 D-RGENGSPGAPG------APGHPG------PPGPVGPAGKSGDR--GESGPAGPAGAPG 1077
Query: 139 GHPHAHPHPAAAPPPPPPPQRLAASVSGSFTLMRDERAALASVGHLYGPYGKELPAMGSP 198
P + P P P+ ER A GH P G+P
Sbjct: 1078 ------PAGSRGAPGPQGPRGDKGETG--------ERGAAGIKGHRGFPGNP-----GAP 1118
Query: 199 LSPLPNALPPALHGAPQPPPPPPPPPLAAYGPPGHLAGDKLLPPAAFEPHAALLGRAEDA 258
SP P A+ P P P P+ GPPG P
Sbjct: 1119 GSPGPAGQQGAIGS---PGPAGPRGPVGPSGPPGKDGTSGHPGPI--------------- 1160
Query: 259 LARGLPGGGGGTGSGGAGSGSAAGLLAPLGGLAAAGAHGPHGGGGGPGGSGGGPSAGAAA 318
G PG G G G+ G G GP G G PG GG A A A
Sbjct: 1161 ---GPPGPRGNRGERGSE-----------GSPGHPGQPGPPGPPGAPGPCCGGVGAAAIA 1206
Score = 31.6 bits (70), Expect = 1.7
Identities = 34/120 (28%), Positives = 35/120 (29%), Gaps = 34/120 (28%)
Query: 214 PQPPPPPPPPPLAAYGPPGHLAGDKLLPPAAFEPHAALLGRAEDALARGLPGGGGGTG-- 271
PQPP P PP GP G GD P + GR D G PG G G
Sbjct: 89 PQPPTAPTRPP-NGQGPQGP-KGDPGPP--------GIPGRNGDPGIPGQPGSPGSPGPP 138
Query: 272 ----------------------SGGAGSGSAAGLLAPLGGLAAAGAHGPHGGGGGPGGSG 309
G G AG P G G G G G PG G
Sbjct: 139 GICESCPTGPQNYSPQYDSYDVKSGVAVGGLAGYPGPAGPPGPPGPPGTSGHPGSPGSPG 198
>gi|25777671 protein phosphatase 1, regulatory subunit 10 [Homo
sapiens]
Length = 940
Score = 62.8 bits (151), Expect = 7e-10
Identities = 83/325 (25%), Positives = 103/325 (31%), Gaps = 97/325 (29%)
Query: 52 SLLDGGGGGGGGGAGGA-----------------GGAGSAGGGADFRGELAGPL-----H 89
+L GG GG GAGG+ G G GGG + + L + H
Sbjct: 536 TLEPGGSGGSPDGAGGSKLPPVLANLMGSMGAGKGPQGPGGGGINVQEILTSIMGSPNSH 595
Query: 90 PAMGMACEAPGLGGTYTTLTP---------LQHLPPLAAVADKFHQH---AAAAAVAGAH 137
P+ + + L P PP K QH + G H
Sbjct: 596 PSEELLKQPDYSDKIKQMLVPHGLLGPGPIANGFPPGGPGGPKGMQHFPPGPGGPMPGPH 655
Query: 138 GGHPHAHPHPAAAPPPPPPPQRLAASVSGSFTLMRDERAALASVGHLYGPY--GKELPAM 195
GG P P PPPPP P+ G P
Sbjct: 656 GG-PGGPVGPRLLGPPPPPRGG--------------------------DPFWDGPGDPMR 688
Query: 196 GSPLSPLPNALPPALH------GAPQPPPPPPP------------PPLAAYGPPGHLAGD 237
G P+ P P H G +PPPPPPP PP GP G + G
Sbjct: 689 GGPMRGGPGPGPGPYHRGRGGRGGNEPPPPPPPFRGARGGRSGGGPPNGRGGPGGGMVGG 748
Query: 238 KLLPPAAFEPH---AALLGRAEDALARGLPGGGGGT------GSGGA--GSGSAAGLLAP 286
PH +G + PGGG G+ G GG+ G G P
Sbjct: 749 -----GGHRPHEGPGGGMGNSSGHRPHEGPGGGMGSGHRPHEGPGGSMGGGGGHRPHEGP 803
Query: 287 LGGLAAAGAHGPHGGGGGPGGSGGG 311
GG++ H PH G GG G+GGG
Sbjct: 804 GGGISGGSGHRPHEGPGGGMGAGGG 828
Score = 58.5 bits (140), Expect = 1e-08
Identities = 75/274 (27%), Positives = 88/274 (32%), Gaps = 44/274 (16%)
Query: 59 GGGGGGAGGAGGAGSAGGGADFRGELAGPLHPAMGMACEAPGLGG--TYTTLT------- 109
GG GG GAGG+ A+ G + G + PG GG LT
Sbjct: 540 GGSGGSPDGAGGSKLPPVLANLMGSMGA------GKGPQGPGGGGINVQEILTSIMGSPN 593
Query: 110 --PLQHLPPLAAVADKFHQHAAAAAVAGAHGGHPHAHPHPAAAPPPPPPPQRLAASVSGS 167
P + L +DK Q G G P A+ P P P Q G
Sbjct: 594 SHPSEELLKQPDYSDKIKQMLVPH---GLLGPGPIANGFPPGGPGGPKGMQHFPPGPGGP 650
Query: 168 FTLMRDERAALASVGHLYGPYGKELPAMGSPLSPLPNALP------PALHGAPQPPPPPP 221
G GP G P + P P P + G P P P
Sbjct: 651 MP------------GPHGGPGGPVGPRLLGPPPPPRGGDPFWDGPGDPMRGGPMRGGPGP 698
Query: 222 PPPLAAYGPPGHLAGDKLLPPAAFEPHAALLGRAEDALARGLPGGGGGTGSGGAGSGSAA 281
P G G + PP F A GR+ G P G GG G G G G
Sbjct: 699 GPGPYHRGRGGRGGNEPPPPPPPFR--GARGGRS----GGGPPNGRGGPGGGMVGGGGHR 752
Query: 282 GLLAPLGGLAAAGAHGPHGGGGGPGGSGGGPSAG 315
P GG+ + H PH G GG GSG P G
Sbjct: 753 PHEGPGGGMGNSSGHRPHEGPGGGMGSGHRPHEG 786
Score = 36.2 bits (82), Expect = 0.070
Identities = 48/181 (26%), Positives = 56/181 (30%), Gaps = 14/181 (7%)
Query: 57 GGGGGGGGAGGAGGAGSAGGGADFRGELAGPLHPAMGMACEAPGLGGTYTTLTPLQHLPP 116
G GG G G G G GGG + G H E PG GG + H P
Sbjct: 724 GARGGRSGGGPPNGRGGPGGGM-----VGGGGH----RPHEGPG-GGMGNSSGHRPHEGP 773
Query: 117 LAAVADKFHQHAAAAAVAGAHGGH-PHAHPHPAAAPPPPPPPQRLAASVSGSFTLMRDER 175
+ H G GGH PH P + P G+ R
Sbjct: 774 GGGMGSGHRPHEGPGGSMGGGGGHRPHEGPGGGISGGSGHRPHEGPGGGMGAGGGHRPHE 833
Query: 176 AALASVGHLYGPYGKELPAMGSPLSPLPNALPPALHGAPQPPPPPPPPPLAAYGPPGHLA 235
S+G G E P G P P+ +P H PPP G PGH
Sbjct: 834 GPGGSMGGSGGHRPHEGPGHGGPHGHRPHDVPG--HRGHDHRGPPPHEHRGHDG-PGHGG 890
Query: 236 G 236
G
Sbjct: 891 G 891
Score = 33.5 bits (75), Expect = 0.46
Identities = 30/92 (32%), Positives = 37/92 (40%), Gaps = 17/92 (18%)
Query: 213 APQPPPPPPPPPLAAYGPPGHLAGDKLLPPAAFEPHAALLGRAEDALARGLPGGGGGTGS 272
+P P P P P+ PP KL+P + ++ E L GG G
Sbjct: 503 SPHEPDPEPYEPI----PP------KLIP---LDEECSM---DETPYVETLEPGGSGGSP 546
Query: 273 GGAGSGSAAGLLAPLGGLAAAGAHGPHGGGGG 304
GAG +LA L G AG GP G GGG
Sbjct: 547 DGAGGSKLPPVLANLMGSMGAG-KGPQGPGGG 577
Score = 31.6 bits (70), Expect = 1.7
Identities = 35/128 (27%), Positives = 42/128 (32%), Gaps = 18/128 (14%)
Query: 25 PGHARSAAAQHRGLVAPGRPGLVAGMASLLD---GGGGGGGGGAGGAGGAGSAGGGADFR 81
PG + HR PG G+ G GGG G GGG G G + GG+
Sbjct: 787 PGGSMGGGGGHRPHEGPGG-GISGGSGHRPHEGPGGGMGAGGGHRPHEGPGGSMGGSGGH 845
Query: 82 GELAGPLH--PAMGMACEAPG-LGGTYTTLTPLQHLPPLAAVADKFHQHAAAAAVAGAHG 138
GP H P + PG G + P +H H G H
Sbjct: 846 RPHEGPGHGGPHGHRPHDVPGHRGHDHRGPPPHEH-----------RGHDGPGHGGGGHR 894
Query: 139 GHPHAHPH 146
GH H H
Sbjct: 895 GHDGGHSH 902
>gi|239757130 PREDICTED: hypothetical protein FLJ22184 [Homo
sapiens]
Length = 855
Score = 62.4 bits (150), Expect = 9e-10
Identities = 72/217 (33%), Positives = 89/217 (41%), Gaps = 45/217 (20%)
Query: 148 AAAPPPPPPPQRLAASVSGSFTLMRDERAALASVGHLYGPYGKELPAMGSPLSPLPNALP 207
A AP PPPPP R +S L +A ++ L G Y P G+ SP P+A
Sbjct: 606 ALAPGPPPPPSRSPSSTLSGPDLAGHSSSATSTPEELRG-YDSG-PEGGAAASPPPDAEL 663
Query: 208 PALHGAPQPPPPPPPPPLAAYGPPGHLAGDKLLPPAAFEPHAA-------------LLGR 254
A H P P PPLA G PG L P A P +A
Sbjct: 664 AACH--PAAWSRGPAPPLAFRGAPGA----PLPWPPATGPGSADGLCTIYETEGPESATP 717
Query: 255 AEDALARG-LPGGGGGTGSGGAGSGSAA--------GLLAPLGGLAA------------- 292
A AL G PG GG + GAG+G+++ G L PLG L A
Sbjct: 718 APGALDPGPSPGTSGGKAAAGAGAGASSRSPKQARLGEL-PLGALQASVVQHLLSRTLLL 776
Query: 293 AGAHGPHGG-GGGPGGSGGGPSAGAAAEEINTKEVAQ 328
A A G GG GGGPGG+ GG G A ++ E+ +
Sbjct: 777 AAAEGAAGGSGGGPGGAEGGGVTGGARAALSDAELGR 813
Score = 46.2 bits (108), Expect = 7e-05
Identities = 52/187 (27%), Positives = 60/187 (32%), Gaps = 38/187 (20%)
Query: 74 AGGGADFRGELAGPLHPAMGMACEAPGLGGTYTTLTPLQHLPPLAAVADKFHQHAAAAAV 133
A G RG P HP+ + GL L P Q PP AA
Sbjct: 253 ARSGPSARGTPRAPAHPSQP---KPKGL----QALRPPQVTPP----------RKDAAPA 295
Query: 134 AGAHGGHPHAHPHPAAAPPPPPPPQRLAASVSGSFTLMRDERAALASVGHLYGPYGKELP 193
G P A P P+AA PP A S S T
Sbjct: 296 LGPLSSSPLATPSPSAALQSQAPPTLPATPHSSSLTCQL--------------------- 334
Query: 194 AMGSPLSPLPNALPPALHGAPQPPPPPPPPPLAAYGPPGHLAGDKLLPPAAFEPHAALLG 253
A PL+P + PP+L P PP PP + G P A LP P A
Sbjct: 335 ATPLPLAPPSPSAPPSLQTLPSPPATPPSQATTSLGSPTLQATHSFLPSPPLSPLATPPP 394
Query: 254 RAEDALA 260
+A ALA
Sbjct: 395 QAPPALA 401
Score = 45.4 bits (106), Expect = 1e-04
Identities = 64/241 (26%), Positives = 80/241 (33%), Gaps = 45/241 (18%)
Query: 110 PLQHLPPLAAVADKFHQHAAAAAVAGAHGGHPHAHPHPAAAPP---PPPPPQRLAASVSG 166
P Q P LAA + A+ P P P AAPP PPPQ A +
Sbjct: 467 PSQAPPSLAAPPLQVPPSPPASPPMSPSATPPPQAPPPLAAPPLQLAKPPPQAPPALATP 526
Query: 167 SFTLMRDERAALASVGHLYGPYGKELPAMGSPLSPLPNALPPALHGAP---QPPPPPPPP 223
+ A+ P+ SPL+ P PP L AP PP PP P
Sbjct: 527 PLQALPSPPASFPG----QAPFSPSASLPMSPLATPPPQAPPVL-AAPLLQVPPSPPASP 581
Query: 224 PLAA------YGPPGHLAGDKLL--------PPAAFEPHAALLG---RAEDALARGLPGG 266
L A GP ++G +L PP + P + L G + A P
Sbjct: 582 TLQAPRRPPTPGPDTSVSGPRLTLALAPGPPPPPSRSPSSTLSGPDLAGHSSSATSTPEE 641
Query: 267 GGGTGSGGAGSGSAA-----------------GLLAPLGGLAAAGAHGPHGGGGGPGGSG 309
G SG G +A+ G PL A GA P GPG +
Sbjct: 642 LRGYDSGPEGGAAASPPPDAELAACHPAAWSRGPAPPLAFRGAPGAPLPWPPATGPGSAD 701
Query: 310 G 310
G
Sbjct: 702 G 702
Score = 43.1 bits (100), Expect = 6e-04
Identities = 47/148 (31%), Positives = 58/148 (39%), Gaps = 18/148 (12%)
Query: 115 PPLAAVADKFHQ--HAAAAAVAGAHGGHPHAHPHPAAAPPPPPPPQRLAASVSGSFTLMR 172
PPL+ +A Q +A A + A P + P A PP PP VS S T
Sbjct: 415 PPLSPLATPSPQAPNALAVHLLQAPFSPPPSPPVQAPFSPPASPP------VSPSATPPS 468
Query: 173 DERAALASVGHLYGPYGKELPAMGSPLSPLPNALPPALHGAP----QPPPPPPP----PP 224
+LA+ P P M +P P A PP L P +PPP PP PP
Sbjct: 469 QAPPSLAAPPLQVPPSPPASPPMSPSATPPPQA-PPPLAAPPLQLAKPPPQAPPALATPP 527
Query: 225 LAAY-GPPGHLAGDKLLPPAAFEPHAAL 251
L A PP G P+A P + L
Sbjct: 528 LQALPSPPASFPGQAPFSPSASLPMSPL 555
Score = 40.0 bits (92), Expect = 0.005
Identities = 55/193 (28%), Positives = 69/193 (35%), Gaps = 38/193 (19%)
Query: 91 AMGMACEAP-----GLGGTYTTLTPLQHLPPLAAVADKFHQHAAAAAVAGAHGGHPHAHP 145
A G A EAP G T P P A A + AG G P P
Sbjct: 143 ARGKATEAPKRSALSAGARRDTSGPTPGTPSPAM--------ARRSRAAGTEVGLPR--P 192
Query: 146 HPAAAPPPPPPPQRLAASVSGSFTLMRDERAAL---ASVGHLYGPYGKELPAMGSPLSPL 202
P+A P PP R + S + + AA ++ G L P + L + +PLS
Sbjct: 193 APSARPRPPTEGPRKSVSSASEHSTTEPSPAARRRPSAGGGLQRPASRSLSSSATPLSS- 251
Query: 203 PNALPPALHG---APQPPPPPPPPPLAAYGPP-------------GHLAGDKLLPPAAFE 246
P P+ G AP P P P L A PP G L+ L P+
Sbjct: 252 PARSGPSARGTPRAPAHPSQPKPKGLQALRPPQVTPPRKDAAPALGPLSSSPLATPS--- 308
Query: 247 PHAALLGRAEDAL 259
P AAL +A L
Sbjct: 309 PSAALQSQAPPTL 321
Score = 37.0 bits (84), Expect = 0.041
Identities = 43/148 (29%), Positives = 48/148 (32%), Gaps = 31/148 (20%)
Query: 111 LQHLP-PLAAVADKFHQHAAAAAVAGAHGGHPHAHPHPAAAPPPPPPPQRLAASVSGSFT 169
LQ LP P A + + + H P P A PPP PP
Sbjct: 351 LQTLPSPPATPPSQATTSLGSPTLQATHSFLPSPPLSPLATPPPQAPP------------ 398
Query: 170 LMRDERAALASVGHLYGPYGKELPAMGSPLSPL-------PNALPPALHGAPQPPPPPPP 222
ALA + L P P PLSPL PNAL L AP PPP PP
Sbjct: 399 -------ALA-LPPLQAPPS---PPASPPLSPLATPSPQAPNALAVHLLQAPFSPPPSPP 447
Query: 223 PPLAAYGPPGHLAGDKLLPPAAFEPHAA 250
P PP+ P A
Sbjct: 448 VQAPFSPPASPPVSPSATPPSQAPPSLA 475
Score = 35.8 bits (81), Expect = 0.092
Identities = 34/136 (25%), Positives = 46/136 (33%), Gaps = 4/136 (2%)
Query: 194 AMGSPLSPLPNALPPALHGAPQPPPPPPPPPLAAYGPPGHLAGDKLLPPAAFEPHAALLG 253
A +P + P L P G+P+PPPP P L G G + L A A +
Sbjct: 13 AARTPAARAPGLLTPRPPGSPRPPPPVTPAALRVLGAAGAVGRKPLAERAGGIGGATI-- 70
Query: 254 RAEDALARGLPGGGGGTGSGGAGSGSAAGLLAPLGGLAAAGAHGPHGGGGGPGGSGGGPS 313
++ R P GT S S A A + GP G G+
Sbjct: 71 --PESAPRAGPTRSAGTSSRNPASRPPASGRGERAPPAKNTSPGPVSSPGRASGTTRPGP 128
Query: 314 AGAAAEEINTKEVAQR 329
G I+ +E R
Sbjct: 129 LGQKGLRISAEETVAR 144
Score = 32.7 bits (73), Expect = 0.78
Identities = 13/22 (59%), Positives = 14/22 (63%)
Query: 55 DGGGGGGGGGAGGAGGAGSAGG 76
+G GG GGG GGA G G GG
Sbjct: 780 EGAAGGSGGGPGGAEGGGVTGG 801
Score = 31.2 bits (69), Expect = 2.3
Identities = 55/215 (25%), Positives = 76/215 (35%), Gaps = 25/215 (11%)
Query: 132 AVAGAHGGHPHAH------PHPAAAPPPPPPPQRLAASVSGSFTLMRDERAALASVGHLY 185
A AGA P A P P +P PPPP A V G+ + + A + G
Sbjct: 8 AKAGAAARTPAARAPGLLTPRPPGSPRPPPPVTPAALRVLGAAGAVGRKPLAERAGGIGG 67
Query: 186 GPYGKELPAMG-----SPLSPLPNALPPALHGAPQPPPP--PPPPPLAAYG------PPG 232
+ P G S P + PPA + PP P P+++ G PG
Sbjct: 68 ATIPESAPRAGPTRSAGTSSRNPASRPPASGRGERAPPAKNTSPGPVSSPGRASGTTRPG 127
Query: 233 HLAGDKLLPPAAFEPHAALLGRAEDALARGLPGGGGGTGSGGAGSGSAAGLLAPLGGLAA 292
L G K L +A E A G+A +A R G + G G+ + +A A
Sbjct: 128 PL-GQKGLRISAEETVAR--GKATEAPKRSALSAGARRDTSGPTPGTPSPAMARRSRAAG 184
Query: 293 AGAHGPHGGGGG---PGGSGGGPSAGAAAEEINTK 324
P P G S +A+E T+
Sbjct: 185 TEVGLPRPAPSARPRPPTEGPRKSVSSASEHSTTE 219
Score = 30.4 bits (67), Expect = 3.9
Identities = 28/81 (34%), Positives = 35/81 (43%), Gaps = 11/81 (13%)
Query: 13 SVAHAQAGELLSPGHARSAAAQH---RGLVAPGRPGLVAGMASLLDGGGGGGGGGAGGAG 69
S A+ GEL G +++ QH R L+ G G GGG GG G G G
Sbjct: 747 SPKQARLGEL-PLGALQASVVQHLLSRTLLLAAAEGAAGG-----SGGGPGGAEGGGVTG 800
Query: 70 GAGSAGGGADFR--GELAGPL 88
GA +A A+ EL PL
Sbjct: 801 GARAALSDAELGRWAELLSPL 821
>gi|239751637 PREDICTED: hypothetical protein FLJ22184 [Homo sapiens]
Length = 1124
Score = 62.4 bits (150), Expect = 9e-10
Identities = 72/217 (33%), Positives = 89/217 (41%), Gaps = 45/217 (20%)
Query: 148 AAAPPPPPPPQRLAASVSGSFTLMRDERAALASVGHLYGPYGKELPAMGSPLSPLPNALP 207
A AP PPPPP R +S L +A ++ L G Y P G+ SP P+A
Sbjct: 875 ALAPGPPPPPSRSPSSTLSGPDLAGHSSSATSTPEELRG-YDSG-PEGGAAASPPPDAEL 932
Query: 208 PALHGAPQPPPPPPPPPLAAYGPPGHLAGDKLLPPAAFEPHAA-------------LLGR 254
A H P P PPLA G PG L P A P +A
Sbjct: 933 AACH--PAAWSRGPAPPLAFRGAPGA----PLPWPPATGPGSADGLCTIYETEGPESATP 986
Query: 255 AEDALARG-LPGGGGGTGSGGAGSGSAA--------GLLAPLGGLAA------------- 292
A AL G PG GG + GAG+G+++ G L PLG L A
Sbjct: 987 APGALDPGPSPGTSGGKAAAGAGAGASSRSPKQARLGEL-PLGALQASVVQHLLSRTLLL 1045
Query: 293 AGAHGPHGG-GGGPGGSGGGPSAGAAAEEINTKEVAQ 328
A A G GG GGGPGG+ GG G A ++ E+ +
Sbjct: 1046 AAAEGAAGGSGGGPGGAEGGGVTGGARAALSDAELGR 1082
Score = 43.5 bits (101), Expect = 4e-04
Identities = 69/250 (27%), Positives = 83/250 (33%), Gaps = 50/250 (20%)
Query: 110 PLQHLPPLAAVADKFHQHAAAAAVAGAHGGHPHAHPHPAAAPP---PPPPPQRLAASV-- 164
P Q PPLAA + A+ P P AAPP PP PP L S
Sbjct: 723 PPQAPPPLAAPPLQVPPSPPASPPMSPSATPPPRVPPLLAAPPLQVPPSPPASLPMSPLA 782
Query: 165 ----SGSFTLMRDERAALASVGHLYGPYGKELPAMGSPLSPL---PNALPPALHGAP--- 214
L AL S + P+ P+SPL P PP L AP
Sbjct: 783 KPPPQAPPALATPPLQALPSPPASFPGQAPFSPSASLPMSPLATPPPQAPPVL-AAPLLQ 841
Query: 215 QPPPPPPPPPLAA------YGPPGHLAGDKLL--------PPAAFEPHAALLG---RAED 257
PP PP P L A GP ++G +L PP + P + L G
Sbjct: 842 VPPSPPASPTLQAPRRPPTPGPDTSVSGPRLTLALAPGPPPPPSRSPSSTLSGPDLAGHS 901
Query: 258 ALARGLPGGGGGTGSGGAGSGSAA-----------------GLLAPLGGLAAAGAHGPHG 300
+ A P G SG G +A+ G PL A GA P
Sbjct: 902 SSATSTPEELRGYDSGPEGGAAASPPPDAELAACHPAAWSRGPAPPLAFRGAPGAPLPWP 961
Query: 301 GGGGPGGSGG 310
GPG + G
Sbjct: 962 PATGPGSADG 971
Score = 40.8 bits (94), Expect = 0.003
Identities = 49/174 (28%), Positives = 60/174 (34%), Gaps = 16/174 (9%)
Query: 84 LAGPLHPAMGMACEAPGLGGTYTTLTPLQH------LPPLAAVADKFHQ--HAAAAAVAG 135
L G P + P L PLQ PPL+ +A Q +A A +
Sbjct: 603 LQGLPSPPLSPLATPPPQAPPXLALPPLQAPPSPPASPPLSPLATPSPQAPNALAVHLLQ 662
Query: 136 AHGGHPHAHPHPAAAPPPPPPPQRLAASVSGSFTLMRDERAALASVGHLYGPYGKELPAM 195
A P + P A PP PP VS S T +LA+ P P M
Sbjct: 663 APFSPPPSPPVQAPFSPPASPP------VSPSATPPSQAPPSLAAPPLQVPPSPPASPPM 716
Query: 196 GSPLSPLPNALPPALHGAPQPPPPPP--PPPLAAYGPPGHLAGDKLLPPAAFEP 247
+P P A PP Q PP PP PP + PP + PP P
Sbjct: 717 SPSATPPPQAPPPLAAPPLQVPPSPPASPPMSPSATPPPRVPPLLAAPPLQVPP 770
Score = 40.0 bits (92), Expect = 0.005
Identities = 48/174 (27%), Positives = 58/174 (33%), Gaps = 34/174 (19%)
Query: 107 TLTPLQHLPPLAAVADKFHQHAAAAAVAGAHGGHP--------HAHPHPAAAPPPP---- 154
T PL++LP LA A+A + H P A P P PPP
Sbjct: 531 TTPPLENLPSLAPPP----LQTASAPLTTPHLETPPCPAPCPLQAPPSPLTTPPPETPSS 586
Query: 155 ---PPPQRLAASVSGSFTLMRDERAALASVGHLYGPYGKELPAMGSP--------LSPL- 202
PPPQ A S + + + P LP + +P LSPL
Sbjct: 587 IATPPPQAPPALASPPLQGLPSPPLSPLATPPPQAPPXLALPPLQAPPSPPASPPLSPLA 646
Query: 203 ------PNALPPALHGAPQPPPPPPPPPLAAYGPPGHLAGDKLLPPAAFEPHAA 250
PNAL L AP PPP PP P PP+ P A
Sbjct: 647 TPSPQAPNALAVHLLQAPFSPPPSPPVQAPFSPPASPPVSPSATPPSQAPPSLA 700
Score = 39.7 bits (91), Expect = 0.006
Identities = 40/143 (27%), Positives = 51/143 (35%), Gaps = 26/143 (18%)
Query: 110 PLQHLPPLAAVADKFHQHAAAAAVAGAHGGHPHAHPHPAAAPP---PPPPPQRLAASVSG 166
P Q P LAA + A+ P P P AAPP PP PP S S
Sbjct: 692 PSQAPPSLAAPPLQVPPSPPASPPMSPSATPPPQAPPPLAAPPLQVPPSPPASPPMSPSA 751
Query: 167 SFTLMRDERAALASVGHLYGPYGKELPAMGSPLSPLPNALPPALHGAPQPPPPPPPPPLA 226
+ P + P + +P +P + P +L +P PPP PP
Sbjct: 752 T-------------------PPPRVPPLLAAPPLQVPPSPPASLPMSPLAKPPPQAPPAL 792
Query: 227 AYGPPGHLAGDKLLPPAAFEPHA 249
A P L PPA+F A
Sbjct: 793 ATPPLQALPS----PPASFPGQA 811
Score = 38.9 bits (89), Expect = 0.011
Identities = 45/152 (29%), Positives = 56/152 (36%), Gaps = 22/152 (14%)
Query: 91 AMGMACEAP-----GLGGTYTTLTPLQHLPPLAAVADKFHQHAAAAAVAGAHGGHPHAHP 145
A G A EAP G T P P A A + AG G P P
Sbjct: 143 ARGKATEAPKRSALSAGARRDTSGPTPGTPSPAM--------ARRSRAAGTEVGLPR--P 192
Query: 146 HPAAAPPPPPPPQRLAASVSGSFTLMRDERAAL---ASVGHLYGPYGKELPAMGSPLSPL 202
P+A P PP R + S + + AA ++ G L P + L + +PLS
Sbjct: 193 APSARPRPPTEGPRKSVSSASEHSTTEPSPAARRRPSAGGGLQRPASRSLSSSATPLSS- 251
Query: 203 PNALPPALHG---APQPPPPPPPPPLAAYGPP 231
P P+ G AP P P P L A PP
Sbjct: 252 PARSGPSARGTPRAPAHPSQPKPKGLQALRPP 283
Score = 36.2 bits (82), Expect = 0.070
Identities = 32/117 (27%), Positives = 44/117 (37%), Gaps = 13/117 (11%)
Query: 134 AGAHGGHPHAHPHPAAAPPPPPPPQRLAASVSGSFTLMRDERAALASVGHLYGPYGKELP 193
A AH P A PP PP++ AA G + ++ + G + +P
Sbjct: 265 APAHPSQPKPKGLQALRPPQVTPPRKDAAPALGPLS------SSPLATPSPSGTKARPVP 318
Query: 194 AMGSPLSPLPNALPPALHGAPQPPPPPPPPPLAAYGPPGHLAGDKLLPPAAFEPHAA 250
+ +PLP LPP+ PP P PLA P + L P A P A
Sbjct: 319 PPDNAATPLPATLPPS-------PPLATPLPLAPPSPSAPPSLQTLPSPPATPPSQA 368
Score = 35.8 bits (81), Expect = 0.092
Identities = 34/136 (25%), Positives = 46/136 (33%), Gaps = 4/136 (2%)
Query: 194 AMGSPLSPLPNALPPALHGAPQPPPPPPPPPLAAYGPPGHLAGDKLLPPAAFEPHAALLG 253
A +P + P L P G+P+PPPP P L G G + L A A +
Sbjct: 13 AARTPAARAPGLLTPRPPGSPRPPPPVTPAALRVLGAAGAVGRKPLAERAGGIGGATI-- 70
Query: 254 RAEDALARGLPGGGGGTGSGGAGSGSAAGLLAPLGGLAAAGAHGPHGGGGGPGGSGGGPS 313
++ R P GT S S A A + GP G G+
Sbjct: 71 --PESAPRAGPTRSAGTSSRNPASRPPASGRGERAPPAKNTSPGPVSSPGRASGTTRPGP 128
Query: 314 AGAAAEEINTKEVAQR 329
G I+ +E R
Sbjct: 129 LGQKGLRISAEETVAR 144
Score = 35.4 bits (80), Expect = 0.12
Identities = 45/175 (25%), Positives = 54/175 (30%), Gaps = 50/175 (28%)
Query: 74 AGGGADFRGELAGPLHPAMGMACEAPGLGGTYTTLTPLQHLPPLAAVADKFHQHAAAAAV 133
A G RG P HP+ + GL L P Q PP AA
Sbjct: 253 ARSGPSARGTPRAPAHPSQP---KPKGL----QALRPPQVTPP----------RKDAAPA 295
Query: 134 AGAHGGHPHAHPHPAAAPPPPPPPQRLAASVSGSFTLMRDERAALASVGHLYGPYGKELP 193
G P A P P+ P PP AA+ P LP
Sbjct: 296 LGPLSSSPLATPSPSGTKARPVPPPDNAAT-----------------------PLPATLP 332
Query: 194 -----AMGSPLSPLPNALPPALHGAPQPPPPPPPPPLAAYGPPGHLAGDKLLPPA 243
A PL+P + PP+L P PP PP + PP PP+
Sbjct: 333 PSPPLATPLPLAPPSPSAPPSLQTLPSPPATPP-----SQAPPSMTTPPMQAPPS 382
Score = 32.7 bits (73), Expect = 0.78
Identities = 13/22 (59%), Positives = 14/22 (63%)
Query: 55 DGGGGGGGGGAGGAGGAGSAGG 76
+G GG GGG GGA G G GG
Sbjct: 1049 EGAAGGSGGGPGGAEGGGVTGG 1070
Score = 31.2 bits (69), Expect = 2.3
Identities = 55/215 (25%), Positives = 76/215 (35%), Gaps = 25/215 (11%)
Query: 132 AVAGAHGGHPHAH------PHPAAAPPPPPPPQRLAASVSGSFTLMRDERAALASVGHLY 185
A AGA P A P P +P PPPP A V G+ + + A + G
Sbjct: 8 AKAGAAARTPAARAPGLLTPRPPGSPRPPPPVTPAALRVLGAAGAVGRKPLAERAGGIGG 67
Query: 186 GPYGKELPAMG-----SPLSPLPNALPPALHGAPQPPPP--PPPPPLAAYG------PPG 232
+ P G S P + PPA + PP P P+++ G PG
Sbjct: 68 ATIPESAPRAGPTRSAGTSSRNPASRPPASGRGERAPPAKNTSPGPVSSPGRASGTTRPG 127
Query: 233 HLAGDKLLPPAAFEPHAALLGRAEDALARGLPGGGGGTGSGGAGSGSAAGLLAPLGGLAA 292
L G K L +A E A G+A +A R G + G G+ + +A A
Sbjct: 128 PL-GQKGLRISAEETVAR--GKATEAPKRSALSAGARRDTSGPTPGTPSPAMARRSRAAG 184
Query: 293 AGAHGPHGGGGG---PGGSGGGPSAGAAAEEINTK 324
P P G S +A+E T+
Sbjct: 185 TEVGLPRPAPSARPRPPTEGPRKSVSSASEHSTTE 219
Score = 30.4 bits (67), Expect = 3.9
Identities = 28/81 (34%), Positives = 35/81 (43%), Gaps = 11/81 (13%)
Query: 13 SVAHAQAGELLSPGHARSAAAQH---RGLVAPGRPGLVAGMASLLDGGGGGGGGGAGGAG 69
S A+ GEL G +++ QH R L+ G G GGG GG G G G
Sbjct: 1016 SPKQARLGEL-PLGALQASVVQHLLSRTLLLAAAEGAAGG-----SGGGPGGAEGGGVTG 1069
Query: 70 GAGSAGGGADFR--GELAGPL 88
GA +A A+ EL PL
Sbjct: 1070 GARAALSDAELGRWAELLSPL 1090
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.314 0.134 0.413
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 28,162,049
Number of Sequences: 37866
Number of extensions: 2066354
Number of successful extensions: 76235
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 1250
Number of HSP's successfully gapped in prelim test: 1439
Number of HSP's that attempted gapping in prelim test: 19548
Number of HSP's gapped (non-prelim): 25898
length of query: 494
length of database: 18,247,518
effective HSP length: 106
effective length of query: 388
effective length of database: 14,233,722
effective search space: 5522684136
effective search space used: 5522684136
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 64 (29.3 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.