Guide to the Human Genome
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Name: ONECUT1 Sequence: fasta or formatted (465aa) NCBI GI: 24307887
Description:

one cut homeobox 1

Referenced in:

Liver

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             7.1         33           2
 C cysteine            0.9          4           1
 D aspartate           2.6         12           1
 E glutamate           4.7         22           2
 F phenylalanine       2.2         10           2
 G glycine             8.6         40           3
 H histidine           8.8         41          11
 I isoleucine          2.4         11           1
 K lysine              4.1         19           2
 L leucine             9.2         43           2
 M methionine          4.1         19           1
 N asparagine          4.1         19           2
 P proline             8.6         40           2
 Q glutamine           4.9         23           2
 R arginine            6.0         28           3
 S serine             10.1         47           6
 T threonine           6.5         30           2
 V valine              3.0         14           1
 W tryptophan          0.9          4           1
 Y tyrosine            1.3          6           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   one cut homeobox 1 
ONECUT2               0.560   one cut domain, family member 2 
ONECUT3               0.432   one cut homeobox 3 
CUX1                  0.056   cut-like homeobox 1 isoform a 
CUX2                  0.055   cut-like 2 
POU4F2                0.032   Brn3b POU domain transcription factor 
C10orf140             0.026   hypothetical protein LOC387640 
LMX1A                 0.025   LIM homeobox transcription factor 1, alpha isoform a...
HOXA1                 0.025   homeobox A1 isoform a 
FUSSEL18              0.025   PREDICTED: functional smad suppressing element 18 [...
FUSSEL18              0.025   PREDICTED: functional smad suppressing element 18 [...
FUSSEL18              0.025   PREDICTED: functional smad suppressing element 18 [...
DYRK1A                0.024   dual-specificity tyrosine-(Y)-phosphorylation regula...
DYRK1A                0.024   dual-specificity tyrosine-(Y)-phosphorylation regula...
PRICKLE3              0.024   LIM domain only 6 
CHD8                  0.024   chromodomain helicase DNA binding protein 8 
IQSEC2                0.024   IQ motif and Sec7 domain 2 isoform1 
NKD2                  0.023   naked cuticle homolog 2 
NR4A3                 0.023   nuclear receptor subfamily 4, group A, member 3 isof...
NR4A3                 0.023   nuclear receptor subfamily 4, group A, member 3 isof...
NR4A3                 0.023   nuclear receptor subfamily 4, group A, member 3 isof...
NR4A3                 0.023   nuclear receptor subfamily 4, group A, member 3 isof...
POU4F3                0.023   POU class 4 homeobox 3 
DLGAP3                0.022   discs, large (Drosophila) homolog-associated protei...
CBX4                  0.022   chromobox homolog 4 
ZIC3                  0.022   zinc finger protein of the cerebellum 3 
LMX1B                 0.021   LIM homeobox transcription factor 1, beta 
SATB1                 0.021   special AT-rich sequence binding protein 1 
SATB1                 0.021   special AT-rich sequence binding protein 1 
LRCH1                 0.021   leucine-rich repeats and calponin homology (CH) doma...
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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