Guide to the Human Genome
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Name: ONECUT3 Sequence: fasta or formatted (494aa) NCBI GI: 122937424
Description:

one cut homeobox 3

Referenced in:

Liver

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine            16.2         80           5
 C cysteine            0.8          4           1
 D aspartate           1.6          8           1
 E glutamate           4.9         24           2
 F phenylalanine       2.4         12           2
 G glycine            15.6         77           9
 H histidine           3.8         19           1
 I isoleucine          1.6          8           1
 K lysine              3.6         18           2
 L leucine            10.9         54           2
 M methionine          2.2         11           1
 N asparagine          1.6          8           1
 P proline            11.1         55           9
 Q glutamine           4.3         21           2
 R arginine            5.9         29           3
 S serine              5.9         29           1
 T threonine           3.4         17           2
 V valine              2.2         11           1
 W tryptophan          0.8          4           1
 Y tyrosine            1.0          5           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   one cut homeobox 3 
ONECUT1               0.416   one cut homeobox 1 
ONECUT2               0.408   one cut domain, family member 2 
POU3F3                0.063   POU class 3 homeobox 3 
SFPQ                  0.059   splicing factor proline/glutamine rich (polypyrimidin...
TAF4                  0.058   TBP-associated factor 4 
CUX2                  0.058   cut-like 2 
CUX1                  0.055   cut-like homeobox 1 isoform a 
FUSSEL18              0.050   PREDICTED: functional smad suppressing element 18 [...
FUSSEL18              0.050   PREDICTED: functional smad suppressing element 18 [...
FUSSEL18              0.050   PREDICTED: functional smad suppressing element 18 [...
ARID1B                0.046   AT rich interactive domain 1B (SWI1-like) isoform 2 ...
ARID1B                0.046   AT rich interactive domain 1B (SWI1-like) isoform 1 ...
ARID1B                0.046   AT rich interactive domain 1B (SWI1-like) isoform 3 ...
COL1A1                0.043   alpha 1 type I collagen preproprotein 
PRR12                 0.042   proline rich 12 
EN1                   0.041   engrailed homeobox 1 
EOMES                 0.041   eomesodermin 
COL2A1                0.041   collagen, type II, alpha 1 isoform 1 precursor [Hom...
ARID1A                0.041   AT rich interactive domain 1A isoform a 
ARID1A                0.041   AT rich interactive domain 1A isoform b 
LBXCOR1               0.040   LBXCOR1 homolog 
COL11A1               0.040   alpha 1 type XI collagen isoform B preproprotein [Ho...
COL11A1               0.040   alpha 1 type XI collagen isoform C preproprotein [Ho...
COL11A1               0.040   alpha 1 type XI collagen isoform A preproprotein [Ho...
COL2A1                0.040   collagen, type II, alpha 1 isoform 2 precursor [Hom...
COL3A1                0.040   collagen type III alpha 1 preproprotein 
PPP1R10               0.039   protein phosphatase 1, regulatory subunit 10 
FLJ22184              0.038   PREDICTED: hypothetical protein FLJ22184 
FLJ22184              0.038   PREDICTED: hypothetical protein FLJ22184 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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