Guide to the Human Genome
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Name: EN1 Sequence: fasta or formatted (392aa) NCBI GI: 126090909
Description:

engrailed homeobox 1

Referenced in:

Homeobox and Related Proteins

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine            17.1         67          10
 C cysteine            1.3          5           1
 D aspartate           3.8         15           1
 E glutamate           3.8         15           2
 F phenylalanine       1.5          6           2
 G glycine            10.7         42           4
 H histidine           2.8         11           2
 I isoleucine          2.0          8           1
 K lysine              5.6         22           4
 L leucine             7.1         28           2
 M methionine          0.8          3           1
 N asparagine          3.1         12           1
 P proline            12.2         48           6
 Q glutamine           6.4         25           2
 R arginine            5.1         20           2
 S serine              7.1         28           2
 T threonine           4.6         18           3
 V valine              2.8         11           2
 W tryptophan          0.8          3           1
 Y tyrosine            1.3          5           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   engrailed homeobox 1 
EN2                   0.325   engrailed homeobox 2 
MNX1                  0.094   homeo box HB9 
NKX1-1                0.084   PREDICTED: HPX-153 homeobox 
NKX1-1                0.082   PREDICTED: NK1 homeobox 1 
NKX6-1                0.076   NK6 transcription factor related, locus 1 
NKX1-2                0.073   PREDICTED: NK1 homeobox 2 
NKX1-2                0.073   PREDICTED: NK1 homeobox 2 
NKX1-2                0.073   PREDICTED: NK1 homeobox 2 
TLX1                  0.072   T-cell leukemia homeobox 1 
EMX1                  0.070   empty spiracles homolog 1 
NKX1-2                0.068   NK1 homeobox 2 
HOXA4                 0.068   homeobox A4 
VAX2                  0.068   ventral anterior homeobox 2 
HOXA5                 0.067   homeobox A5 
HOXD3                 0.066   homeobox D3 
HOXC4                 0.066   homeobox C4 
HOXC4                 0.066   homeobox C4 
VAX1                  0.066   ventral anterior homeobox 1 isoform a 
HOXD9                 0.064   homeobox D9 
MSX1                  0.064   msh homeobox 1 
HOXA13                0.063   homeobox A13 
HOXB3                 0.062   homeobox B3 
HOXD1                 0.061   homeobox D1 
HOXA3                 0.061   homeobox A3 isoform a 
HOXA3                 0.061   homeobox A3 isoform a 
HOXC5                 0.061   homeobox C5 
GSX2                  0.061   GS homeobox 2 
HOXA11                0.059   homeobox A11 
HOXD4                 0.059   homeobox D4 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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