Guide to the Human Genome
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Name: POU3F3 Sequence: fasta or formatted (500aa) NCBI GI: 5453936
Description:

POU class 3 homeobox 3

Referenced in:

POU Domain

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine            14.0         70          16
 C cysteine            0.8          4           1
 D aspartate           3.8         19           2
 E glutamate           2.8         14           2
 F phenylalanine       2.0         10           1
 G glycine            15.8         79          14
 H histidine           6.6         33           8
 I isoleucine          1.6          8           1
 K lysine              3.8         19           2
 L leucine             6.6         33           2
 M methionine          2.2         11           1
 N asparagine          2.0         10           1
 P proline            10.8         54           6
 Q glutamine           6.2         31           3
 R arginine            2.8         14           2
 S serine              7.6         38           2
 T threonine           4.2         21           2
 V valine              4.4         22           2
 W tryptophan          1.0          5           1
 Y tyrosine            1.0          5           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   POU class 3 homeobox 3 
POU3F2                0.416   POU domain, class 3, transcription factor 2 
POU3F4                0.344   POU domain, class 3, transcription factor 4 
POU3F1                0.337   POU domain, class 3, transcription factor 1 
POU2F1                0.177   POU class 2 homeobox 1 
POU2F3                0.173   POU transcription factor 
POU2F2                0.165   POU domain, class 2, transcription factor 2 
POU5F1                0.161   POU domain, class 5, transcription factor 1 isoform ...
POU5F1                0.160   POU domain, class 5, transcription factor 1 isoform...
POU5F1B               0.154   POU class 5 homeobox 1B 
POU1F1                0.152   pituitary specific transcription factor 1 isoform b...
POU1F1                0.152   pituitary specific transcription factor 1 isoform alp...
POU4F1                0.151   POU domain, class 4, transcription factor 1 
POU4F2                0.150   Brn3b POU domain transcription factor 
POU4F3                0.126   POU class 4 homeobox 3 
POU5F2                0.114   POU domain class 5, transcription factor 2 
POU6F1                0.108   POU class 6 homeobox 1 
POU6F2                0.078   POU domain, class 6, transcription factor 2 
ONECUT3               0.061   one cut homeobox 3 
ARID1B                0.056   AT rich interactive domain 1B (SWI1-like) isoform 2 ...
ARID1B                0.056   AT rich interactive domain 1B (SWI1-like) isoform 1 ...
ARID1B                0.056   AT rich interactive domain 1B (SWI1-like) isoform 3 ...
PRR12                 0.055   proline rich 12 
GATA6                 0.054   GATA binding protein 6 
FUSSEL18              0.054   PREDICTED: functional smad suppressing element 18 [...
PPP1R10               0.053   protein phosphatase 1, regulatory subunit 10 
FUSSEL18              0.053   PREDICTED: functional smad suppressing element 18 [...
FUSSEL18              0.053   PREDICTED: functional smad suppressing element 18 [...
SFPQ                  0.044   splicing factor proline/glutamine rich (polypyrimidin...
LBXCOR1               0.040   LBXCOR1 homolog 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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