ARID1A 12771

Name: ARID1A	Sequence: fasta or formatted (2068aa)		NCBI GI: 21264575
Description: AT rich interactive domain 1A isoform b		Referenced in: Nonhistone Chromosomal Proteins
Other entries for this name: alt prot [2285aa] AT rich interactive domain 1A isoform a
Composition: Amino acid Percentage Count Longest homopolymer A alanine 8.3 172 11 C cysteine 0.8 16 1 D aspartate 3.5 72 2 E glutamate 4.6 96 7 F phenylalanine 1.9 39 1 G glycine 11.0 227 7 H histidine 1.9 39 2 I isoleucine 2.6 53 1 K lysine 3.5 73 2 L leucine 6.6 136 3 M methionine 3.9 80 2 N asparagine 3.9 80 3 P proline 12.6 260 6 Q glutamine 9.0 187 8 R arginine 3.6 75 3 S serine 11.4 235 6 T threonine 4.4 90 3 V valine 2.9 61 2 W tryptophan 0.5 11 3 Y tyrosine 3.2 66 2			Comparative genomics: Search single species RefSeq proteins at NCBI H. sapiens M. musculus D. rerio C. intestinalis S. purpuratus D. melanogaster C. elegans A. thaliana S. cerevisiae E. coli W3110 A. pernix K1 Search summary Figure data Additional searches of RefSeq proteins at NCBI All Eukaryotes Bacteria Archaea Viruses Primates Mammals Vertebrates
Related human proteins: Protein Relative score Description Self-match 1.000 AT rich interactive domain 1A isoform b ARID1A 0.668 AT rich interactive domain 1A isoform a ARID1B 0.408 AT rich interactive domain 1B (SWI1-like) isoform 3 ... ARID1B 0.407 AT rich interactive domain 1B (SWI1-like) isoform 2 ... ARID1B 0.403 AT rich interactive domain 1B (SWI1-like) isoform 1 ... COL3A1 0.023 collagen type III alpha 1 preproprotein FLJ22184 0.022 PREDICTED: hypothetical protein FLJ22184 FLJ22184 0.022 PREDICTED: hypothetical protein LOC80164 COL1A1 0.021 alpha 1 type I collagen preproprotein COL5A1 0.021 alpha 1 type V collagen preproprotein HRNR 0.019 hornerin MED15 0.019 mediator complex subunit 15 isoform b COL2A1 0.019 collagen, type II, alpha 1 isoform 1 precursor [Hom... COL2A1 0.019 collagen, type II, alpha 1 isoform 2 precursor [Hom... MED15 0.019 mediator complex subunit 15 isoform a PRR12 0.019 proline rich 12 COL16A1 0.019 alpha 1 type XVI collagen precursor NCOA6 0.019 nuclear receptor coactivator 6 MN1 0.019 meningioma 1 COL4A5 0.019 type IV collagen alpha 5 isoform 3 precursor PCLO 0.018 piccolo isoform 2 PCLO 0.018 piccolo isoform 1 ARID3A 0.018 AT rich interactive domain 3A (BRIGHT- like) protein ... COL11A1 0.018 alpha 1 type XI collagen isoform B preproprotein [Ho... COL11A1 0.018 alpha 1 type XI collagen isoform C preproprotein [Ho... COL11A1 0.018 alpha 1 type XI collagen isoform A preproprotein [Ho... COL4A5 0.018 type IV collagen alpha 5 isoform 2 precursor NACA 0.018 nascent polypeptide-associated complex alpha subuni... COL1A2 0.018 alpha 2 type I collagen ATN1 0.018 atrophin-1 Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.