Guide to the Human Genome
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Name: CGN Sequence: fasta or formatted (1203aa) NCBI GI: 16262452
Description:

cingulin

Referenced in:

Gap Junctions and Tight Junctions

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             7.6         92           3
 C cysteine            0.3          4           1
 D aspartate           5.1         61           2
 E glutamate          14.0        169           3
 F phenylalanine       1.1         13           1
 G glycine             5.5         66           2
 H histidine           1.1         13           1
 I isoleucine          1.5         18           1
 K lysine              6.8         82           2
 L leucine            12.2        147           2
 M methionine          1.5         18           1
 N asparagine          2.5         30           1
 P proline             2.7         33           2
 Q glutamine           9.9        119           2
 R arginine           10.0        120           3
 S serine              7.7         93           2
 T threonine           4.2         50           2
 V valine              5.1         61           2
 W tryptophan          0.5          6           1
 Y tyrosine            0.7          8           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   cingulin 
CGNL1                 0.195   cingulin-like 1 
MYH10                 0.113   myosin, heavy polypeptide 10, non-muscle 
MYH11                 0.110   smooth muscle myosin heavy chain 11 isoform SM1A [Ho...
MYH11                 0.110   smooth muscle myosin heavy chain 11 isoform SM1B [Ho...
MYH11                 0.108   smooth muscle myosin heavy chain 11 isoform SM2B [Ho...
MYH11                 0.108   smooth muscle myosin heavy chain 11 isoform SM2A [Ho...
MYH9                  0.102   myosin, heavy polypeptide 9, non-muscle 
MYH14                 0.096   myosin, heavy chain 14 isoform 1 
MYH14                 0.096   myosin, heavy chain 14 isoform 2 
MYH14                 0.096   myosin, heavy chain 14 isoform 3 
MYH7                  0.073   myosin, heavy chain 7, cardiac muscle, beta 
MYH2                  0.071   myosin, heavy chain 2, skeletal muscle, adult [Homo...
MYH2                  0.071   myosin, heavy chain 2, skeletal muscle, adult [Homo...
MYH6                  0.071   myosin heavy chain 6 
MYH8                  0.071   myosin, heavy chain 8, skeletal muscle, perinatal [...
MYH3                  0.071   myosin, heavy chain 3, skeletal muscle, embryonic [H...
TCHH                  0.071   trichohyalin 
MYH7B                 0.070   myosin, heavy polypeptide 7B, cardiac muscle, beta ...
MYH1                  0.070   myosin, heavy chain 1, skeletal muscle, adult [Homo...
MYH4                  0.068   myosin, heavy polypeptide 4, skeletal muscle 
MYH15                 0.065   myosin, heavy polypeptide 15 
CEP250                0.065   centrosomal protein 2 
MYH13                 0.064   myosin, heavy polypeptide 13, skeletal muscle [Homo...
NUMA1                 0.061   nuclear mitotic apparatus protein 1 
PLEC1                 0.061   plectin 1 isoform 11 
PLEC1                 0.061   plectin 1 isoform 10 
PLEC1                 0.061   plectin 1 isoform 8 
PLEC1                 0.061   plectin 1 isoform 7 
PLEC1                 0.061   plectin 1 isoform 6 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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