Guide to the Human Genome
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Name: KDM6B Sequence: fasta or formatted (1682aa) NCBI GI: 122937251
Description:

lysine (K)-specific demethylase 6B

Referenced in:

Protein Composition and Structure
Histones, Related Proteins, and Modifying Enzymes
Tetratricopeptide Domains

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             9.0        151           2
 C cysteine            1.7         29           1
 D aspartate           2.7         46           2
 E glutamate           6.6        111           3
 F phenylalanine       2.4         40           2
 G glycine             7.6        128           2
 H histidine           2.7         46           2
 I isoleucine          2.2         37           2
 K lysine              4.0         68           2
 L leucine             7.8        131           2
 M methionine          0.8         14           1
 N asparagine          2.3         39           3
 P proline            16.1        271          13
 Q glutamine           4.2         71           3
 R arginine            6.8        114           3
 S serine              9.3        156           8
 T threonine           5.6         95          11
 V valine              4.8         80           3
 W tryptophan          1.3         22           2
 Y tyrosine            2.0         33           2
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   lysine (K)-specific demethylase 6B 
KDM6A                 0.197   ubiquitously transcribed tetratricopeptide repeat, ...
UTY                   0.193   tetratricopeptide repeat protein isoform 3 
UTY                   0.158   tetratricopeptide repeat protein isoform 2 
UTY                   0.052   tetratricopeptide repeat protein isoform 1 
NACA                  0.036   nascent polypeptide-associated complex alpha subuni...
FLJ22184              0.033   PREDICTED: hypothetical protein FLJ22184 
FLJ22184              0.031   PREDICTED: hypothetical protein LOC80164 
FMN2                  0.030   formin 2 
ATN1                  0.030   atrophin-1 
ATN1                  0.030   atrophin-1 
FLJ22184              0.029   PREDICTED: hypothetical protein FLJ22184 
SHANK1                0.027   SH3 and multiple ankyrin repeat domains 1 
RAPH1                 0.027   Ras association and pleckstrin homology domains 1 is...
C6orf132              0.027   PREDICTED: chromosome 6 open reading frame 132 [Hom...
C6orf132              0.027   PREDICTED: chromosome 6 open reading frame 132 [Hom...
C6orf132              0.027   PREDICTED: hypothetical protein LOC647024 
MUC2                  0.025   mucin 2 precursor 
PRG4                  0.025   proteoglycan 4 isoform D 
PRG4                  0.025   proteoglycan 4 isoform C 
PRG4                  0.025   proteoglycan 4 isoform B 
PRG4                  0.025   proteoglycan 4 isoform A 
PCLO                  0.025   piccolo isoform 2 
PCLO                  0.025   piccolo isoform 1 
MLL2                  0.024   myeloid/lymphoid or mixed-lineage leukemia 2 
MAP1A                 0.024   microtubule-associated protein 1A 
PRB2                  0.023   proline-rich protein BstNI subfamily 2 
MLL4                  0.022   myeloid/lymphoid or mixed-lineage leukemia 4 
WIPF3                 0.022   WAS/WASL interacting protein family, member 3 [Homo...
COL18A1               0.022   alpha 1 type XVIII collagen isoform 3 precursor [Ho...
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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