Guide to the Human Genome
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Name: TSC22D2 Sequence: fasta or formatted (780aa) NCBI GI: 7662236
Description:

TSC22 domain family, member 2

Referenced in:

TGF-beta Family

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine            11.7         91           6
 C cysteine            0.9          7           1
 D aspartate           3.5         27           2
 E glutamate           4.1         32           2
 F phenylalanine       1.4         11           1
 G glycine             8.5         66           3
 H histidine           1.4         11           1
 I isoleucine          1.9         15           2
 K lysine              2.1         16           3
 L leucine             6.9         54           3
 M methionine          1.9         15           2
 N asparagine          2.4         19           2
 P proline            13.7        107           5
 Q glutamine           9.0         70           3
 R arginine            2.7         21           2
 S serine             12.2         95           3
 T threonine           6.5         51           2
 V valine              7.9         62           5
 W tryptophan          0.3          2           1
 Y tyrosine            1.0          8           2
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   TSC22 domain family, member 2 
TSC22D1               0.149   TSC22 domain family, member 1 isoform 1 
TSC22D1               0.062   TSC22 domain family, member 1 isoform 2 
TSC22D4               0.060   TSC22 domain family, member 4 
TSC22D3               0.054   TSC22 domain family, member 3 isoform 2 
TSC22D3               0.054   TSC22 domain family, member 3 isoform 1 
NACA                  0.050   nascent polypeptide-associated complex alpha subuni...
FLJ22184              0.045   PREDICTED: hypothetical protein FLJ22184 
FLJ22184              0.043   PREDICTED: hypothetical protein LOC80164 
FLJ22184              0.041   PREDICTED: hypothetical protein FLJ22184 
KIAA0754              0.041   hypothetical protein LOC643314 
TAF4                  0.040   TBP-associated factor 4 
FMN2                  0.038   formin 2 
TSC22D3               0.037   TSC22 domain family, member 3 isoform 3 
GLTSCR1               0.035   glioma tumor suppressor candidate region gene 1 [Ho...
MUC2                  0.035   mucin 2 precursor 
PRB1                  0.035   proline-rich protein BstNI subfamily 1 isoform 1 pre...
SRCAP                 0.035   Snf2-related CBP activator protein 
PRB2                  0.034   proline-rich protein BstNI subfamily 2 
TCERG1                0.034   transcription elongation regulator 1 isoform 2 [Homo...
ATN1                  0.033   atrophin-1 
ATN1                  0.033   atrophin-1 
BRD4                  0.033   bromodomain-containing protein 4 isoform long 
PCLO                  0.033   piccolo isoform 2 
PCLO                  0.033   piccolo isoform 1 
RERE                  0.032   atrophin-1 like protein isoform b 
RERE                  0.032   atrophin-1 like protein isoform a 
RERE                  0.032   atrophin-1 like protein isoform a 
WNK2                  0.031   WNK lysine deficient protein kinase 2 
CIC                   0.031   capicua homolog 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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