CCDC88B 36662

Name: CCDC88B	Sequence: fasta or formatted (1476aa)		NCBI GI: 88196790
Description: coiled-coil domain containing 88		Referenced in: Coiled-Coil Proteins
Composition: Amino acid Percentage Count Longest homopolymer A alanine 11.3 167 3 C cysteine 0.5 8 1 D aspartate 2.7 40 1 E glutamate 15.6 230 8 F phenylalanine 0.7 11 1 G glycine 7.4 109 2 H histidine 2.0 30 2 I isoleucine 0.8 12 2 K lysine 2.7 40 2 L leucine 15.2 224 3 M methionine 1.0 15 1 N asparagine 1.2 17 1 P proline 5.9 87 3 Q glutamine 9.1 135 3 R arginine 10.7 158 2 S serine 6.0 89 2 T threonine 2.0 30 2 V valine 3.7 55 2 W tryptophan 0.9 13 1 Y tyrosine 0.4 6 1			Comparative genomics: Search single species RefSeq proteins at NCBI H. sapiens M. musculus D. rerio C. intestinalis S. purpuratus D. melanogaster C. elegans A. thaliana S. cerevisiae E. coli W3110 A. pernix K1 Search summary Figure data Additional searches of RefSeq proteins at NCBI All Eukaryotes Bacteria Archaea Viruses Primates Mammals Vertebrates
Related human proteins: Protein Relative score Description Self-match 1.000 coiled-coil domain containing 88 CCDC88A 0.176 coiled-coil domain containing 88A isoform 1 CCDC88A 0.174 coiled-coil domain containing 88A isoform 2 CCDC88C 0.173 DVL-binding protein DAPLE PLEC1 0.062 plectin 1 isoform 11 PLEC1 0.062 plectin 1 isoform 10 PLEC1 0.062 plectin 1 isoform 8 PLEC1 0.062 plectin 1 isoform 7 PLEC1 0.062 plectin 1 isoform 6 PLEC1 0.062 plectin 1 isoform 3 PLEC1 0.062 plectin 1 isoform 2 PLEC1 0.062 plectin 1 isoform 1 TCHH 0.048 trichohyalin CEP250 0.047 centrosomal protein 2 MYH14 0.046 myosin, heavy chain 14 isoform 1 MYH14 0.046 myosin, heavy chain 14 isoform 2 MYH14 0.046 myosin, heavy chain 14 isoform 3 CROCC 0.045 ciliary rootlet coiled-coil MYH7B 0.043 myosin, heavy polypeptide 7B, cardiac muscle, beta ... NUMA1 0.043 nuclear mitotic apparatus protein 1 MYH11 0.041 smooth muscle myosin heavy chain 11 isoform SM2B [Ho... MYH11 0.041 smooth muscle myosin heavy chain 11 isoform SM2A [Ho... MYH11 0.041 smooth muscle myosin heavy chain 11 isoform SM1A [Ho... MYH11 0.041 smooth muscle myosin heavy chain 11 isoform SM1B [Ho... CGN 0.038 cingulin MYH10 0.037 myosin, heavy polypeptide 10, non-muscle GOLGB1 0.036 golgi autoantigen, golgin subfamily b, macrogolgin ... FYCO1 0.035 FYVE and coiled-coil domain containing 1 CEP164 0.033 centrosomal protein 164kDa EEA1 0.032 early endosome antigen 1, 162kD Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.