Guide to the Human Genome
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Name: CCDC88B Sequence: fasta or formatted (1476aa) NCBI GI: 88196790
Description:

coiled-coil domain containing 88

Referenced in:

Coiled-Coil Proteins

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine            11.3        167           3
 C cysteine            0.5          8           1
 D aspartate           2.7         40           1
 E glutamate          15.6        230           8
 F phenylalanine       0.7         11           1
 G glycine             7.4        109           2
 H histidine           2.0         30           2
 I isoleucine          0.8         12           2
 K lysine              2.7         40           2
 L leucine            15.2        224           3
 M methionine          1.0         15           1
 N asparagine          1.2         17           1
 P proline             5.9         87           3
 Q glutamine           9.1        135           3
 R arginine           10.7        158           2
 S serine              6.0         89           2
 T threonine           2.0         30           2
 V valine              3.7         55           2
 W tryptophan          0.9         13           1
 Y tyrosine            0.4          6           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   coiled-coil domain containing 88 
CCDC88A               0.176   coiled-coil domain containing 88A isoform 1 
CCDC88A               0.174   coiled-coil domain containing 88A isoform 2 
CCDC88C               0.173   DVL-binding protein DAPLE 
PLEC1                 0.062   plectin 1 isoform 11 
PLEC1                 0.062   plectin 1 isoform 10 
PLEC1                 0.062   plectin 1 isoform 8 
PLEC1                 0.062   plectin 1 isoform 7 
PLEC1                 0.062   plectin 1 isoform 6 
PLEC1                 0.062   plectin 1 isoform 3 
PLEC1                 0.062   plectin 1 isoform 2 
PLEC1                 0.062   plectin 1 isoform 1 
TCHH                  0.048   trichohyalin 
CEP250                0.047   centrosomal protein 2 
MYH14                 0.046   myosin, heavy chain 14 isoform 1 
MYH14                 0.046   myosin, heavy chain 14 isoform 2 
MYH14                 0.046   myosin, heavy chain 14 isoform 3 
CROCC                 0.045   ciliary rootlet coiled-coil 
MYH7B                 0.043   myosin, heavy polypeptide 7B, cardiac muscle, beta ...
NUMA1                 0.043   nuclear mitotic apparatus protein 1 
MYH11                 0.041   smooth muscle myosin heavy chain 11 isoform SM2B [Ho...
MYH11                 0.041   smooth muscle myosin heavy chain 11 isoform SM2A [Ho...
MYH11                 0.041   smooth muscle myosin heavy chain 11 isoform SM1A [Ho...
MYH11                 0.041   smooth muscle myosin heavy chain 11 isoform SM1B [Ho...
CGN                   0.038   cingulin 
MYH10                 0.037   myosin, heavy polypeptide 10, non-muscle 
GOLGB1                0.036   golgi autoantigen, golgin subfamily b, macrogolgin ...
FYCO1                 0.035   FYVE and coiled-coil domain containing 1 
CEP164                0.033   centrosomal protein 164kDa 
EEA1                  0.032   early endosome antigen 1, 162kD 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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