Guide to the Human Genome
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Name: MICALL1 Sequence: fasta or formatted (863aa) NCBI GI: 31324577
Description:

molecule interacting with Rab13

Referenced in:

LIM Domain Proteins

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             8.5         73           2
 C cysteine            2.0         17           1
 D aspartate           3.8         33           2
 E glutamate           9.2         79           5
 F phenylalanine       1.9         16           1
 G glycine             6.7         58           3
 H histidine           2.3         20           1
 I isoleucine          2.0         17           2
 K lysine              6.3         54           3
 L leucine             8.7         75           3
 M methionine          1.4         12           1
 N asparagine          2.3         20           2
 P proline            12.7        110           2
 Q glutamine           4.6         40           3
 R arginine            6.5         56           2
 S serine             10.4         90           3
 T threonine           4.3         37           2
 V valine              4.5         39           1
 W tryptophan          0.6          5           1
 Y tyrosine            1.4         12           2
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   molecule interacting with Rab13 
MICALL2               0.227   MICAL-like 2 isoform 1 
MICAL1                0.065   microtubule associated monoxygenase, calponin and L...
MICAL1                0.065   microtubule associated monoxygenase, calponin and L...
MICAL3                0.057   microtubule associated monoxygenase, calponin and L...
MICAL3                0.057   microtubule associated monoxygenase, calponin and L...
MICAL3                0.057   microtubule associated monoxygenase, calponin and L...
MICAL2                0.053   microtubule associated monoxygenase, calponin and LIM...
SPTBN2                0.051   spectrin, beta, non-erythrocytic 2 
ACTN2                 0.050   actinin, alpha 2 
ACTN3                 0.050   actinin, alpha 3 
EHBP1L1               0.049   tangerin 
ACTN1                 0.049   actinin, alpha 1 isoform c 
ACTN1                 0.049   actinin, alpha 1 isoform a 
ACTN1                 0.049   actinin, alpha 1 isoform b 
SPTBN5                0.048   spectrin, beta, non-erythrocytic 5 
FLJ22184              0.048   PREDICTED: hypothetical protein FLJ22184 
SPTBN1                0.048   spectrin, beta, non-erythrocytic 1 isoform 2 
SPTBN1                0.048   spectrin, beta, non-erythrocytic 1 isoform 1 
SPTBN4                0.047   spectrin, beta, non-erythrocytic 4 isoform sigma1 [...
ACTN4                 0.047   actinin, alpha 4 
EHBP1                 0.046   EH domain binding protein 1 isoform 3 
EHBP1                 0.046   EH domain binding protein 1 isoform 3 
EHBP1                 0.046   EH domain binding protein 1 isoform 2 
EHBP1                 0.046   EH domain binding protein 1 isoform 1 
SPTB                  0.045   spectrin beta isoform a 
SPTB                  0.045   spectrin beta isoform b 
NACA                  0.043   nascent polypeptide-associated complex alpha subuni...
FLJ22184              0.043   PREDICTED: hypothetical protein LOC80164 
MICALCL               0.042   MICAL C-terminal like 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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