LMX1A 24906

Name: LMX1A	Sequence: fasta or formatted (382aa)		NCBI GI: 28893581
Description: LIM homeobox transcription factor 1, alpha isoform a		Referenced in: Homeobox and Related Proteins
Other entries for this name: alt prot [133aa] LIM homeobox transcription factor 1, alpha isoform b alt prot [100aa] LIM homeobox transcription factor 1, alpha isoform c
Composition: Amino acid Percentage Count Longest homopolymer A alanine 6.8 26 2 C cysteine 4.7 18 3 D aspartate 5.5 21 2 E glutamate 6.8 26 2 F phenylalanine 4.5 17 1 G glycine 6.5 25 3 H histidine 2.1 8 1 I isoleucine 1.8 7 1 K lysine 6.5 25 2 L leucine 9.4 36 2 M methionine 2.4 9 1 N asparagine 2.6 10 1 P proline 4.7 18 2 Q glutamine 7.9 30 6 R arginine 5.8 22 2 S serine 9.4 36 2 T threonine 4.5 17 2 V valine 4.7 18 2 W tryptophan 0.5 2 1 Y tyrosine 2.9 11 1			Comparative genomics: Search single species RefSeq proteins at NCBI H. sapiens M. musculus D. rerio C. intestinalis S. purpuratus D. melanogaster C. elegans A. thaliana S. cerevisiae E. coli W3110 A. pernix K1 Search summary Figure data Additional searches of RefSeq proteins at NCBI All Eukaryotes Bacteria Archaea Viruses Primates Mammals Vertebrates
Related human proteins: Protein Relative score Description Self-match 1.000 LIM homeobox transcription factor 1, alpha isoform a... LMX1B 0.630 LIM homeobox transcription factor 1, beta LMX1A 0.329 LIM homeobox transcription factor 1, alpha isoform b... LMX1A 0.246 LIM homeobox transcription factor 1, alpha isoform c... LHX1 0.220 LIM homeobox protein 1 LHX5 0.218 LIM homeobox protein 5 LHX3 0.214 LIM homeobox protein 3 isoform a LHX3 0.214 LIM homeobox protein 3 isoform b LHX4 0.209 LIM homeobox protein 4 ISL2 0.197 ISL LIM homeobox 2 ISL1 0.188 islet-1 LHX8 0.176 LIM homeobox 8 LHX6 0.175 LIM homeobox protein 6 isoform 2 LHX6 0.175 LIM homeobox protein 6 isoform 1 LHX9 0.167 LIM homeobox 9 isoform 1 LHX9 0.167 LIM homeobox 9 isoform 2 LHX2 0.162 LIM homeobox protein 2 LMO3 0.109 LIM domain only 3 LMO3 0.109 LIM domain only 3 LMO1 0.108 LIM domain only 1 LMO4 0.104 LIM domain only 4 LMO2 0.080 LIM domain only 2 isoform 2 LMO2 0.080 LIM domain only 2 isoform 2 LMO2 0.080 LIM domain only 2 isoform 1 PDLIM7 0.071 PDZ and LIM domain 7 isoform 2 PDLIM7 0.071 PDZ and LIM domain 7 isoform 1 PDLIM5 0.070 PDZ and LIM domain 5 isoform b PDLIM5 0.070 PDZ and LIM domain 5 isoform a LDB3 0.064 LIM domain binding 3 isoform 2 LDB3 0.064 LIM domain binding 3 isoform 1 Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.