Guide to the Human Genome
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Name: LHX4 Sequence: fasta or formatted (390aa) NCBI GI: 15375314
Description:

LIM homeobox protein 4

Referenced in:

Homeobox and Related Proteins

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             6.4         25           1
 C cysteine            3.6         14           1
 D aspartate           6.7         26           2
 E glutamate           4.9         19           1
 F phenylalanine       3.6         14           2
 G glycine             8.7         34           2
 H histidine           2.8         11           1
 I isoleucine          3.6         14           2
 K lysine              5.9         23           2
 L leucine             7.2         28           2
 M methionine          2.8         11           2
 N asparagine          2.8         11           1
 P proline             5.1         20           2
 Q glutamine           6.7         26           2
 R arginine            5.9         23           2
 S serine              9.5         37           2
 T threonine           4.9         19           2
 V valine              5.1         20           2
 W tryptophan          1.0          4           1
 Y tyrosine            2.8         11           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   LIM homeobox protein 4 
LHX3                  0.616   LIM homeobox protein 3 isoform a 
LHX3                  0.616   LIM homeobox protein 3 isoform b 
LHX1                  0.281   LIM homeobox protein 1 
LHX5                  0.281   LIM homeobox protein 5 
LMX1A                 0.203   LIM homeobox transcription factor 1, alpha isoform a...
LMX1B                 0.201   LIM homeobox transcription factor 1, beta 
ISL2                  0.172   ISL LIM homeobox 2 
ISL1                  0.170   islet-1 
LHX6                  0.166   LIM homeobox protein 6 isoform 2 
LHX6                  0.166   LIM homeobox protein 6 isoform 1 
LHX8                  0.162   LIM homeobox 8 
LMO1                  0.129   LIM domain only 1 
LHX2                  0.129   LIM homeobox protein 2 
LHX9                  0.126   LIM homeobox 9 isoform 1 
LHX9                  0.126   LIM homeobox 9 isoform 2 
LMO4                  0.123   LIM domain only 4 
LMO3                  0.123   LIM domain only 3 
LMO3                  0.123   LIM domain only 3 
LIMK1                 0.096   LIM domain kinase 1 
LMO2                  0.093   LIM domain only 2 isoform 2 
LMO2                  0.093   LIM domain only 2 isoform 2 
LMO2                  0.093   LIM domain only 2 isoform 1 
ABLIM1                0.080   actin-binding LIM protein 1 isoform b 
ABLIM1                0.080   actin-binding LIM protein 1 isoform a 
ABLIM1                0.079   actin-binding LIM protein 1 isoform c 
ABLIM2                0.077   actin binding LIM protein family, member 2 isoform ...
ABLIM2                0.077   actin binding LIM protein family, member 2 isoform ...
ABLIM2                0.077   actin binding LIM protein family, member 2 isoform ...
ABLIM2                0.077   actin binding LIM protein family, member 2 isoform ...
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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