Guide to the Human Genome
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Name: LMO4 Sequence: fasta or formatted (165aa) NCBI GI: 5803072
Description:

LIM domain only 4

Referenced in:

Homeobox and Related Proteins
LIM Domain Proteins

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             6.1         10           1
 C cysteine            9.1         15           2
 D aspartate           4.2          7           1
 E glutamate           1.2          2           1
 F phenylalanine       3.0          5           1
 G glycine             9.1         15           2
 H histidine           3.0          5           1
 I isoleucine          4.2          7           1
 K lysine              3.6          6           1
 L leucine             9.7         16           2
 M methionine          2.4          4           1
 N asparagine          5.5          9           1
 P proline             5.5          9           3
 Q glutamine           4.2          7           1
 R arginine            6.1         10           1
 S serine             10.9         18           3
 T threonine           3.6          6           1
 V valine              3.6          6           1
 W tryptophan          1.2          2           1
 Y tyrosine            3.6          6           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   LIM domain only 4 
LMO1                  0.416   LIM domain only 1 
LMO3                  0.401   LIM domain only 3 
LMO3                  0.401   LIM domain only 3 
LMO2                  0.320   LIM domain only 2 isoform 2 
LMO2                  0.320   LIM domain only 2 isoform 2 
LMO2                  0.320   LIM domain only 2 isoform 1 
LHX9                  0.290   LIM homeobox 9 isoform 1 
LHX9                  0.290   LIM homeobox 9 isoform 2 
LHX4                  0.287   LIM homeobox protein 4 
LHX2                  0.284   LIM homeobox protein 2 
LHX3                  0.266   LIM homeobox protein 3 isoform a 
LHX3                  0.266   LIM homeobox protein 3 isoform b 
ISL2                  0.260   ISL LIM homeobox 2 
LHX5                  0.254   LIM homeobox protein 5 
LHX8                  0.254   LIM homeobox 8 
LHX6                  0.246   LIM homeobox protein 6 isoform 2 
LHX6                  0.246   LIM homeobox protein 6 isoform 1 
LHX1                  0.246   LIM homeobox protein 1 
ISL1                  0.243   islet-1 
LMX1B                 0.240   LIM homeobox transcription factor 1, beta 
LMX1A                 0.237   LIM homeobox transcription factor 1, alpha isoform a...
LIMK1                 0.159   LIM domain kinase 1 
ABLIM1                0.138   actin-binding LIM protein 1 isoform c 
ABLIM1                0.138   actin-binding LIM protein 1 isoform b 
ABLIM1                0.138   actin-binding LIM protein 1 isoform a 
ABLIM2                0.135   actin binding LIM protein family, member 2 isoform ...
ABLIM2                0.135   actin binding LIM protein family, member 2 isoform ...
ABLIM2                0.135   actin binding LIM protein family, member 2 isoform ...
ABLIM2                0.135   actin binding LIM protein family, member 2 isoform ...
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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