Guide to the Human Genome
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Name: ISL2 Sequence: fasta or formatted (359aa) NCBI GI: 21956641
Description:

ISL LIM homeobox 2

Referenced in:

Homeobox and Related Proteins
Pancreas and Insulin

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             6.4         23           3
 C cysteine            4.5         16           1
 D aspartate           5.3         19           1
 E glutamate           4.7         17           1
 F phenylalanine       3.3         12           1
 G glycine             6.7         24           1
 H histidine           3.6         13           1
 I isoleucine          2.5          9           2
 K lysine              5.6         20           3
 L leucine            10.3         37           3
 M methionine          2.2          8           1
 N asparagine          1.7          6           1
 P proline             6.4         23           2
 Q glutamine           6.7         24           4
 R arginine            6.4         23           1
 S serine              9.5         34           3
 T threonine           5.0         18           2
 V valine              6.4         23           1
 W tryptophan          0.8          3           1
 Y tyrosine            1.9          7           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   ISL LIM homeobox 2 
ISL1                  0.736   islet-1 
LHX9                  0.218   LIM homeobox 9 isoform 1 
LHX9                  0.218   LIM homeobox 9 isoform 2 
LHX2                  0.213   LIM homeobox protein 2 
LMX1B                 0.213   LIM homeobox transcription factor 1, beta 
LMX1A                 0.210   LIM homeobox transcription factor 1, alpha isoform a...
LHX3                  0.194   LIM homeobox protein 3 isoform a 
LHX3                  0.194   LIM homeobox protein 3 isoform b 
LHX1                  0.194   LIM homeobox protein 1 
LHX5                  0.190   LIM homeobox protein 5 
LHX4                  0.189   LIM homeobox protein 4 
LHX8                  0.187   LIM homeobox 8 
LHX6                  0.186   LIM homeobox protein 6 isoform 2 
LHX6                  0.186   LIM homeobox protein 6 isoform 1 
LMO4                  0.122   LIM domain only 4 
LMO3                  0.115   LIM domain only 3 
LMO3                  0.115   LIM domain only 3 
LMO1                  0.112   LIM domain only 1 
LMO2                  0.094   LIM domain only 2 isoform 2 
LMO2                  0.094   LIM domain only 2 isoform 2 
LMO2                  0.094   LIM domain only 2 isoform 1 
LIMK1                 0.078   LIM domain kinase 1 
ABLIM1                0.078   actin-binding LIM protein 1 isoform c 
ABLIM1                0.078   actin-binding LIM protein 1 isoform b 
ABLIM1                0.078   actin-binding LIM protein 1 isoform a 
ABLIM3                0.070   actin binding LIM protein family, member 3 
LIMK2                 0.066   LIM domain kinase 2 isoform 2a 
ABLIM2                0.064   actin binding LIM protein family, member 2 isoform ...
ABLIM2                0.064   actin binding LIM protein family, member 2 isoform ...
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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