Guide to the Human Genome
Home | Table of Contents | Search text | Search genes | Search sequences | Purchase | FAQ | Blog | Help
Name: LHX6 Sequence: fasta or formatted (392aa) NCBI GI: 134284359
Description:

LIM homeobox protein 6 isoform 1

Referenced in:

Homeobox and Related Proteins

Other entries for this name:
alt prot [377aa] LIM homeobox protein 6 isoform 2
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine            10.2         40           2
 C cysteine            5.4         21           1
 D aspartate           4.1         16           2
 E glutamate           5.4         21           2
 F phenylalanine       2.8         11           1
 G glycine             6.1         24           2
 H histidine           2.8         11           1
 I isoleucine          3.1         12           1
 K lysine              4.8         19           2
 L leucine             7.7         30           2
 M methionine          2.3          9           1
 N asparagine          3.6         14           2
 P proline             7.7         30           2
 Q glutamine           6.1         24           2
 R arginine            6.6         26           2
 S serine              7.9         31           2
 T threonine           4.8         19           2
 V valine              4.8         19           1
 W tryptophan          1.0          4           1
 Y tyrosine            2.8         11           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   LIM homeobox protein 6 isoform 1 
LHX6                  0.893   LIM homeobox protein 6 isoform 2 
LHX8                  0.475   LIM homeobox 8 
LHX9                  0.191   LIM homeobox 9 isoform 1 
LHX9                  0.191   LIM homeobox 9 isoform 2 
LHX2                  0.189   LIM homeobox protein 2 
LHX3                  0.174   LIM homeobox protein 3 isoform a 
LHX3                  0.174   LIM homeobox protein 3 isoform b 
LHX1                  0.169   LIM homeobox protein 1 
LMX1A                 0.168   LIM homeobox transcription factor 1, alpha isoform a...
ISL1                  0.168   islet-1 
ISL2                  0.168   ISL LIM homeobox 2 
LHX5                  0.166   LIM homeobox protein 5 
LMX1B                 0.165   LIM homeobox transcription factor 1, beta 
LHX4                  0.164   LIM homeobox protein 4 
LMO4                  0.103   LIM domain only 4 
LMO1                  0.097   LIM domain only 1 
LMO3                  0.092   LIM domain only 3 
LMO3                  0.092   LIM domain only 3 
LMO2                  0.081   LIM domain only 2 isoform 1 
LIMK1                 0.074   LIM domain kinase 1 
LMO2                  0.069   LIM domain only 2 isoform 2 
LMO2                  0.069   LIM domain only 2 isoform 2 
ABLIM1                0.063   actin-binding LIM protein 1 isoform c 
ABLIM1                0.063   actin-binding LIM protein 1 isoform b 
ABLIM1                0.063   actin-binding LIM protein 1 isoform a 
PDLIM7                0.062   PDZ and LIM domain 7 isoform 2 
PDLIM7                0.062   PDZ and LIM domain 7 isoform 1 
ABLIM3                0.057   actin binding LIM protein family, member 3 
PDLIM5                0.057   PDZ and LIM domain 5 isoform b 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


Home | Table of Contents | Search text | Search genes | Search sequences | Purchase | FAQ | Blog | Help

Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

CSHL Press