Guide to the Human Genome
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Name: LHX1 Sequence: fasta or formatted (406aa) NCBI GI: 30410785
Description:

LIM homeobox protein 1

Referenced in:

Homeobox and Related Proteins

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             6.7         27           2
 C cysteine            3.9         16           2
 D aspartate           5.2         21           2
 E glutamate           5.9         24           2
 F phenylalanine       4.9         20           2
 G glycine             7.4         30           2
 H histidine           3.2         13           2
 I isoleucine          2.2          9           2
 K lysine              5.2         21           1
 L leucine             7.9         32           2
 M methionine          2.0          8           2
 N asparagine          4.7         19           1
 P proline             9.1         37           2
 Q glutamine           4.2         17           1
 R arginine            6.4         26           2
 S serine             10.3         42           2
 T threonine           3.7         15           2
 V valine              4.2         17           1
 W tryptophan          0.7          3           1
 Y tyrosine            2.2          9           2
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   LIM homeobox protein 1 
LHX5                  0.723   LIM homeobox protein 5 
LHX4                  0.265   LIM homeobox protein 4 
LHX3                  0.253   LIM homeobox protein 3 isoform a 
LHX3                  0.253   LIM homeobox protein 3 isoform b 
LMX1B                 0.204   LIM homeobox transcription factor 1, beta 
LMX1A                 0.201   LIM homeobox transcription factor 1, alpha isoform a...
ISL1                  0.169   islet-1 
LHX2                  0.169   LIM homeobox protein 2 
ISL2                  0.168   ISL LIM homeobox 2 
LHX9                  0.164   LIM homeobox 9 isoform 1 
LHX9                  0.164   LIM homeobox 9 isoform 2 
LHX6                  0.162   LIM homeobox protein 6 isoform 2 
LHX6                  0.162   LIM homeobox protein 6 isoform 1 
LHX8                  0.150   LIM homeobox 8 
LMO1                  0.100   LIM domain only 1 
LMO4                  0.099   LIM domain only 4 
LMO3                  0.097   LIM domain only 3 
LMO3                  0.097   LIM domain only 3 
LMO2                  0.081   LIM domain only 2 isoform 2 
LMO2                  0.081   LIM domain only 2 isoform 2 
LMO2                  0.081   LIM domain only 2 isoform 1 
LIMK1                 0.077   LIM domain kinase 1 
ABLIM3                0.077   actin binding LIM protein family, member 3 
ABLIM1                0.074   actin-binding LIM protein 1 isoform c 
ABLIM1                0.071   actin-binding LIM protein 1 isoform b 
ABLIM1                0.071   actin-binding LIM protein 1 isoform a 
PDLIM7                0.059   PDZ and LIM domain 7 isoform 2 
PDLIM7                0.059   PDZ and LIM domain 7 isoform 1 
ABLIM2                0.057   actin binding LIM protein family, member 2 isoform ...
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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