Guide to the Human Genome
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Name: LMO2 Sequence: fasta or formatted (158aa) NCBI GI: 214832219
Description:

LIM domain only 2 isoform 2

Referenced in:

Homeobox and Related Proteins
LIM Domain Proteins

Other entries for this name:
alt prot [227aa] LIM domain only 2 isoform 1
alt mRNA [158aa] LIM domain only 2 isoform 2
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             3.8          6           2
 C cysteine            8.9         14           1
 D aspartate           8.2         13           1
 E glutamate           6.3         10           2
 F phenylalanine       2.5          4           1
 G glycine             7.0         11           2
 H histidine           1.9          3           1
 I isoleucine          6.3         10           1
 K lysine              6.3         10           1
 L leucine            10.8         17           2
 M methionine          2.5          4           1
 N asparagine          1.9          3           1
 P proline             2.5          4           2
 Q glutamine           4.4          7           2
 R arginine            8.2         13           2
 S serine              5.1          8           2
 T threonine           1.9          3           1
 V valine              4.4          7           1
 W tryptophan          1.3          2           1
 Y tyrosine            5.7          9           2
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   LIM domain only 2 isoform 2 
LMO2                  1.000   LIM domain only 2 isoform 2 
LMO2                  1.000   LIM domain only 2 isoform 1 
LMO1                  0.457   LIM domain only 1 
LMO3                  0.448   LIM domain only 3 
LMO3                  0.448   LIM domain only 3 
LMO4                  0.338   LIM domain only 4 
LHX4                  0.230   LIM homeobox protein 4 
LHX3                  0.227   LIM homeobox protein 3 isoform a 
LHX3                  0.227   LIM homeobox protein 3 isoform b 
LHX9                  0.227   LIM homeobox 9 isoform 1 
LHX9                  0.227   LIM homeobox 9 isoform 2 
LHX2                  0.224   LIM homeobox protein 2 
LHX1                  0.211   LIM homeobox protein 1 
ISL2                  0.211   ISL LIM homeobox 2 
LHX8                  0.205   LIM homeobox 8 
LMX1B                 0.202   LIM homeobox transcription factor 1, beta 
ISL1                  0.202   islet-1 
LHX5                  0.196   LIM homeobox protein 5 
LMX1A                 0.192   LIM homeobox transcription factor 1, alpha isoform a...
LHX6                  0.174   LIM homeobox protein 6 isoform 2 
LHX6                  0.174   LIM homeobox protein 6 isoform 1 
ABLIM2                0.158   actin binding LIM protein family, member 2 isoform ...
ABLIM2                0.158   actin binding LIM protein family, member 2 isoform ...
ABLIM2                0.158   actin binding LIM protein family, member 2 isoform ...
ABLIM2                0.158   actin binding LIM protein family, member 2 isoform ...
ABLIM2                0.158   actin binding LIM protein family, member 2 isoform ...
ABLIM2                0.158   actin binding LIM protein family, member 2 isoform ...
ABLIM2                0.158   actin binding LIM protein family, member 2 isoform ...
LIMK1                 0.142   LIM domain kinase 1 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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