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Search of human proteins with 239757727
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|239757727 PREDICTED: similar to hCG2013141 [Homo sapiens]
(133 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|239757727 PREDICTED: similar to hCG2013141 [Homo sapiens] 286 3e-78
gi|239752218 PREDICTED: hypothetical protein XP_002348134 [Homo ... 286 3e-78
gi|239754166 PREDICTED: hypothetical protein [Homo sapiens] 43 6e-05
gi|239748699 PREDICTED: hypothetical protein [Homo sapiens] 43 6e-05
gi|239742726 PREDICTED: hypothetical protein XP_002342623 [Homo ... 43 6e-05
gi|116256356 alpha 4 type IV collagen precursor [Homo sapiens] 37 0.005
gi|89363017 alpha 2 type V collagen preproprotein [Homo sapiens] 36 0.008
gi|239746530 PREDICTED: hypothetical protein XP_002343754 [Homo ... 36 0.008
gi|189571647 hypothetical protein LOC79684 [Homo sapiens] 36 0.008
gi|32895368 alpha 1 type VIII collagen precursor [Homo sapiens] 36 0.008
gi|17738302 alpha 1 type VIII collagen precursor [Homo sapiens] 36 0.008
gi|239749709 PREDICTED: hypothetical protein [Homo sapiens] 35 0.018
gi|148536825 alpha 1 type IV collagen preproprotein [Homo sapiens] 35 0.023
gi|4502961 alpha 1 type VII collagen precursor [Homo sapiens] 34 0.039
gi|117414137 retinitis pigmentosa 1-like 1 [Homo sapiens] 34 0.039
gi|115511036 alpha-kinase 3 [Homo sapiens] 34 0.039
gi|115392133 collagen, type XXIV, alpha 1 [Homo sapiens] 34 0.039
gi|110349772 alpha 1 type I collagen preproprotein [Homo sapiens] 33 0.051
gi|7662162 ALEX2 protein [Homo sapiens] 33 0.051
gi|29540562 ALEX2 protein [Homo sapiens] 33 0.051
gi|73486666 alpha 1 type IX collagen isoform 1 precursor [Homo s... 33 0.067
gi|18105032 type X collagen alpha 1 precursor [Homo sapiens] 33 0.067
gi|32140760 collagen, type XXVII, alpha 1 [Homo sapiens] 33 0.067
gi|73486664 alpha 1 type IX collagen isoform 2 precursor [Homo s... 33 0.067
gi|48762934 alpha 2 type I collagen [Homo sapiens] 33 0.087
gi|185136021 spinster homolog 2 [Homo sapiens] 32 0.11
gi|111118976 collagen, type II, alpha 1 isoform 1 precursor [Hom... 32 0.11
gi|111118974 collagen, type II, alpha 1 isoform 2 precursor [Hom... 32 0.11
gi|89276751 alpha 1 type V collagen preproprotein [Homo sapiens] 32 0.11
gi|32964830 collagen, type VIII, alpha 2 [Homo sapiens] 32 0.11
>gi|239757727 PREDICTED: similar to hCG2013141 [Homo sapiens]
Length = 133
Score = 286 bits (732), Expect = 3e-78
Identities = 133/133 (100%), Positives = 133/133 (100%)
Query: 1 MEGEACAGTWVARGPAPVLGGQGLSGPCTRSGRLVPLAPGSEGLSTWASSCRGGTGSPST 60
MEGEACAGTWVARGPAPVLGGQGLSGPCTRSGRLVPLAPGSEGLSTWASSCRGGTGSPST
Sbjct: 1 MEGEACAGTWVARGPAPVLGGQGLSGPCTRSGRLVPLAPGSEGLSTWASSCRGGTGSPST 60
Query: 61 AGLPALTTLELSPGLSHLPAGQGSGLAACHAQASLRWAPCEARASRMGASHCSTAPGPVH 120
AGLPALTTLELSPGLSHLPAGQGSGLAACHAQASLRWAPCEARASRMGASHCSTAPGPVH
Sbjct: 61 AGLPALTTLELSPGLSHLPAGQGSGLAACHAQASLRWAPCEARASRMGASHCSTAPGPVH 120
Query: 121 CPRAEEYRCPVWD 133
CPRAEEYRCPVWD
Sbjct: 121 CPRAEEYRCPVWD 133
>gi|239752218 PREDICTED: hypothetical protein XP_002348134 [Homo
sapiens]
Length = 133
Score = 286 bits (732), Expect = 3e-78
Identities = 133/133 (100%), Positives = 133/133 (100%)
Query: 1 MEGEACAGTWVARGPAPVLGGQGLSGPCTRSGRLVPLAPGSEGLSTWASSCRGGTGSPST 60
MEGEACAGTWVARGPAPVLGGQGLSGPCTRSGRLVPLAPGSEGLSTWASSCRGGTGSPST
Sbjct: 1 MEGEACAGTWVARGPAPVLGGQGLSGPCTRSGRLVPLAPGSEGLSTWASSCRGGTGSPST 60
Query: 61 AGLPALTTLELSPGLSHLPAGQGSGLAACHAQASLRWAPCEARASRMGASHCSTAPGPVH 120
AGLPALTTLELSPGLSHLPAGQGSGLAACHAQASLRWAPCEARASRMGASHCSTAPGPVH
Sbjct: 61 AGLPALTTLELSPGLSHLPAGQGSGLAACHAQASLRWAPCEARASRMGASHCSTAPGPVH 120
Query: 121 CPRAEEYRCPVWD 133
CPRAEEYRCPVWD
Sbjct: 121 CPRAEEYRCPVWD 133
>gi|239754166 PREDICTED: hypothetical protein [Homo sapiens]
Length = 91
Score = 43.1 bits (100), Expect = 6e-05
Identities = 19/29 (65%), Positives = 21/29 (72%)
Query: 100 CEARASRMGASHCSTAPGPVHCPRAEEYR 128
C A AS A+ CSTAPGP+ CPRAEE R
Sbjct: 43 CAAPASPTSAAPCSTAPGPIDCPRAEECR 71
>gi|239748699 PREDICTED: hypothetical protein [Homo sapiens]
Length = 91
Score = 43.1 bits (100), Expect = 6e-05
Identities = 19/29 (65%), Positives = 21/29 (72%)
Query: 100 CEARASRMGASHCSTAPGPVHCPRAEEYR 128
C A AS A+ CSTAPGP+ CPRAEE R
Sbjct: 43 CAAPASPTSAAPCSTAPGPIDCPRAEECR 71
>gi|239742726 PREDICTED: hypothetical protein XP_002342623 [Homo
sapiens]
Length = 91
Score = 43.1 bits (100), Expect = 6e-05
Identities = 19/29 (65%), Positives = 21/29 (72%)
Query: 100 CEARASRMGASHCSTAPGPVHCPRAEEYR 128
C A AS A+ CSTAPGP+ CPRAEE R
Sbjct: 43 CAAPASPTSAAPCSTAPGPIDCPRAEECR 71
>gi|116256356 alpha 4 type IV collagen precursor [Homo sapiens]
Length = 1690
Score = 37.0 bits (84), Expect = 0.005
Identities = 29/90 (32%), Positives = 33/90 (36%), Gaps = 18/90 (20%)
Query: 12 ARGPAPVLGGQGLSGPCTRSG----------------RLVPLAPGSEGLSTWASS--CRG 53
A GPA + G GL GP R G R P PG GL + S G
Sbjct: 793 AEGPAGIPGFLGLKGPKGREGHAGFPGVPGPPGHSCERGAPGIPGQPGLPGYPGSPGAPG 852
Query: 54 GTGSPSTAGLPALTTLELSPGLSHLPAGQG 83
G G P G P ++ PGL P G
Sbjct: 853 GKGQPGDVGPPGPAGMKGLPGLPGRPGAHG 882
Score = 35.8 bits (81), Expect = 0.010
Identities = 30/87 (34%), Positives = 35/87 (40%), Gaps = 23/87 (26%)
Query: 3 GEACAGTWVARGPAPVLGGQGLSGPCTRSGRLVPLAPGSEGLSTWASSCRGGTGSPSTAG 62
GEACAG GP QG G +P PG G+ S G G P + G
Sbjct: 397 GEACAGMIGPPGP------QGFPG--------LPGLPGEAGIPGRPDSAPGKPGKPGSPG 442
Query: 63 LPALTTLELSPGLSHLPAGQGSGLAAC 89
LP +PGL LP GS + C
Sbjct: 443 LPG------APGLQGLP---GSSVIYC 460
Score = 28.5 bits (62), Expect = 1.6
Identities = 27/91 (29%), Positives = 31/91 (34%), Gaps = 4/91 (4%)
Query: 14 GPAPVLGGQGLSGPCTRSGRLVPL--APGSEGLSTWASSCRGGTGSPSTAGLPALTTLEL 71
GP G G GP G PG +G + C G G+ GLP +
Sbjct: 1057 GPPGFSGIDGARGPKGNKGDPASHFGPPGPKG-EPGSPGCPGHFGASGEQGLPGIQGPRG 1115
Query: 72 SPGLSHLPAGQG-SGLAACHAQASLRWAPCE 101
SPG P G G H LR P E
Sbjct: 1116 SPGRPGPPGSSGPPGCPGDHGMPGLRGQPGE 1146
>gi|89363017 alpha 2 type V collagen preproprotein [Homo sapiens]
Length = 1499
Score = 36.2 bits (82), Expect = 0.008
Identities = 31/83 (37%), Positives = 38/83 (45%), Gaps = 5/83 (6%)
Query: 1 MEGEACAGTWVARGPAPVLGGQGLSGPCTRSGRLVPLAPGSEGLSTWASSCRGGTGSPST 60
M+GEA G ARGP G +G +GP G P PG+ G + +G TGSP T
Sbjct: 385 MKGEA--GPTGARGPEGPQGQRGETGPPGPVGS--PGLPGAIG-TDGTPGAKGPTGSPGT 439
Query: 61 AGLPALTTLELSPGLSHLPAGQG 83
+G P SPG QG
Sbjct: 440 SGPPGSAGPPGSPGPQGSTGPQG 462
Score = 31.2 bits (69), Expect = 0.25
Identities = 28/86 (32%), Positives = 32/86 (37%), Gaps = 9/86 (10%)
Query: 7 AGTWVARGPAPVLGGQGLSGPCTRSGRLVPLA-PGSEGLS--------TWASSCRGGTGS 57
AGT GP G +G GP G P+ PG EG + A RG G
Sbjct: 1013 AGTPGKVGPTGATGDKGPPGPVGPPGSNGPVGEPGPEGPAGNDGTPGRDGAVGERGDRGD 1072
Query: 58 PSTAGLPALTTLELSPGLSHLPAGQG 83
P AGLP +PG P G
Sbjct: 1073 PGPAGLPGSQGAPGTPGPVGAPGDAG 1098
Score = 27.7 bits (60), Expect = 2.8
Identities = 23/69 (33%), Positives = 28/69 (40%), Gaps = 7/69 (10%)
Query: 20 GGQGLSGPCTRSGRLVPLAPGSEGLSTWASSCRGGTGSPSTAGLPALTTLELSPGLSHLP 79
G GL GP G P+ GS G +G G P GLP L +PG+ P
Sbjct: 531 GSDGLPGPKGAQGERGPV--GSSG----PKGSQGDPGRPGEPGLPGARGLTGNPGVQG-P 583
Query: 80 AGQGSGLAA 88
G+ L A
Sbjct: 584 EGKLGPLGA 592
Score = 26.9 bits (58), Expect = 4.8
Identities = 21/64 (32%), Positives = 24/64 (37%), Gaps = 9/64 (14%)
Query: 20 GGQGLSGPCTRSGRLVPLAPGSEGLSTWASSCRGGTGSPSTAGLPALTTLELSPGLSHLP 79
G +G GP G + P PG EG RG G P T G P +PG P
Sbjct: 480 GPKGEPGPHGIQGPIGP--PGEEGK-------RGPRGDPGTVGPPGPVGERGAPGNRGFP 530
Query: 80 AGQG 83
G
Sbjct: 531 GSDG 534
Score = 26.2 bits (56), Expect = 8.2
Identities = 19/62 (30%), Positives = 23/62 (37%)
Query: 13 RGPAPVLGGQGLSGPCTRSGRLVPLAPGSEGLSTWASSCRGGTGSPSTAGLPALTTLELS 72
RGPA GG G G G+ P P +T G G G+P L +
Sbjct: 956 RGPAGPPGGPGDKGDPGEDGQPGPDGPPGPAGTTGQRGIVGMPGQRGERGMPGLPGPAGT 1015
Query: 73 PG 74
PG
Sbjct: 1016 PG 1017
>gi|239746530 PREDICTED: hypothetical protein XP_002343754 [Homo
sapiens]
Length = 536
Score = 36.2 bits (82), Expect = 0.008
Identities = 24/60 (40%), Positives = 28/60 (46%), Gaps = 4/60 (6%)
Query: 4 EACAGTWVARGPA-PVLGGQGLSGPCTRSGRLVPLAPGSEGLSTW--ASSCRGGTGSPST 60
E C ARG P LG G +G + G P PG GL +W A S RG G PS+
Sbjct: 40 EPCMAPGAARGRGKPALGAHG-AGCSSMGGAPPPTDPGRAGLRSWGAAGSARGSEGRPSS 98
>gi|189571647 hypothetical protein LOC79684 [Homo sapiens]
Length = 507
Score = 36.2 bits (82), Expect = 0.008
Identities = 30/85 (35%), Positives = 36/85 (42%), Gaps = 7/85 (8%)
Query: 20 GGQGLSGPCTRSGRLVPLAPGSEGLSTWASSCRGGTGSPSTAGLPALTTLELSPGLSHLP 79
G LS P T G PL PGS S A+S GG G A +++ SPG
Sbjct: 34 GNPSLSDPSTPRGAS-PLGPGSAAGSGAAAS--GGLGLGLGGRSAASSSVSFSPG----G 86
Query: 80 AGQGSGLAACHAQASLRWAPCEARA 104
G G+ AA A + W P E A
Sbjct: 87 GGGGAAAAAAAACRGMSWTPAETNA 111
>gi|32895368 alpha 1 type VIII collagen precursor [Homo sapiens]
Length = 744
Score = 36.2 bits (82), Expect = 0.008
Identities = 26/71 (36%), Positives = 32/71 (45%), Gaps = 11/71 (15%)
Query: 13 RGPAPVLGGQGLSGPCTRSGRLVPLAPGSEGLSTWASSCRGGTGSPSTAGLPALTTLELS 72
RGP + G QGL GP G +P APG +G G G P GLP +
Sbjct: 225 RGPKGLPGPQGLRGPKGDKGFGMPGAPGVKGPP-------GMHGPPGPVGLPGVG----K 273
Query: 73 PGLSHLPAGQG 83
PG++ P QG
Sbjct: 274 PGVTGFPGPQG 284
>gi|17738302 alpha 1 type VIII collagen precursor [Homo sapiens]
Length = 744
Score = 36.2 bits (82), Expect = 0.008
Identities = 26/71 (36%), Positives = 32/71 (45%), Gaps = 11/71 (15%)
Query: 13 RGPAPVLGGQGLSGPCTRSGRLVPLAPGSEGLSTWASSCRGGTGSPSTAGLPALTTLELS 72
RGP + G QGL GP G +P APG +G G G P GLP +
Sbjct: 225 RGPKGLPGPQGLRGPKGDKGFGMPGAPGVKGPP-------GMHGPPGPVGLPGVG----K 273
Query: 73 PGLSHLPAGQG 83
PG++ P QG
Sbjct: 274 PGVTGFPGPQG 284
>gi|239749709 PREDICTED: hypothetical protein [Homo sapiens]
Length = 178
Score = 35.0 bits (79), Expect = 0.018
Identities = 32/105 (30%), Positives = 41/105 (39%), Gaps = 14/105 (13%)
Query: 26 GPCTRSGRLVPLAPGSEGLSTWASSCRGGTGSPSTAGLPALTTLELSPGLSHLPAGQGSG 85
G + RL +A G G +G G+ A P E GLSHL G+G
Sbjct: 86 GQVPQGERLRAMAKGGVG--------KGSQGAERQASRPHA---EHRLGLSHLTRAAGAG 134
Query: 86 LAACHAQASLRWAPCEARASRMGASHCSTAPGPVHCPRAEEYRCP 130
A A A+ +P + R GA+ A GP R RCP
Sbjct: 135 AARRRAGAARTRSP---KGCRAGAARLERAGGPAAPARVPPARCP 176
>gi|148536825 alpha 1 type IV collagen preproprotein [Homo sapiens]
Length = 1669
Score = 34.7 bits (78), Expect = 0.023
Identities = 22/51 (43%), Positives = 26/51 (50%), Gaps = 4/51 (7%)
Query: 20 GGQGLSGPCTRSGRLVPL--APGSEGL--STWASSCRGGTGSPSTAGLPAL 66
G GL GP G++VPL PG+EGL S +G G P T G P L
Sbjct: 627 GSPGLPGPKGEPGKIVPLPGPPGAEGLPGSPGFPGPQGDRGFPGTPGRPGL 677
Score = 30.8 bits (68), Expect = 0.33
Identities = 25/76 (32%), Positives = 31/76 (40%), Gaps = 6/76 (7%)
Query: 12 ARGPAPVLGGQGLSGPCTRSGRLVPLAPGSEGLSTWA----SSCRGGTGSPSTAGLPALT 67
ARGP G GLSGP G PG GL +G G +GLP L
Sbjct: 806 ARGPPGGQGPPGLSGPPGIKGEKG--FPGFPGLDMPGPKGDKGAQGLPGITGQSGLPGLP 863
Query: 68 TLELSPGLSHLPAGQG 83
+ +PG+ P +G
Sbjct: 864 GQQGAPGIPGFPGSKG 879
Score = 30.8 bits (68), Expect = 0.33
Identities = 25/82 (30%), Positives = 32/82 (39%), Gaps = 12/82 (14%)
Query: 3 GEACAGTWVARGPAPVLGGQGLSGPCTRSGRLVPLAPGSEGLSTWASSCRGGTGSPSTAG 62
G A G RGP G GL GP G PG +G+ +G G+P G
Sbjct: 1228 GHATEGPKGDRGPQGQPGLPGLPGPMGPPG-----LPGIDGV-------KGDKGNPGWPG 1275
Query: 63 LPALTTLELSPGLSHLPAGQGS 84
P + + PG +P GS
Sbjct: 1276 APGVPGPKGDPGFQGMPGIGGS 1297
Score = 30.0 bits (66), Expect = 0.57
Identities = 22/72 (30%), Positives = 30/72 (41%), Gaps = 5/72 (6%)
Query: 13 RGPAPVLGGQGLSGPCTRSGRL-VPLAPGSEGLSTWASSCRGGTGSPSTAGLPALTTLEL 71
+G + G G G G + +P PGS GL G G P + GLP +
Sbjct: 1066 KGDQGIAGFPGSPGEKGEKGSIGIPGMPGSPGLK----GSPGSVGYPGSPGLPGEKGDKG 1121
Query: 72 SPGLSHLPAGQG 83
PGL +P +G
Sbjct: 1122 LPGLDGIPGVKG 1133
Score = 26.9 bits (58), Expect = 4.8
Identities = 25/75 (33%), Positives = 27/75 (36%), Gaps = 15/75 (20%)
Query: 14 GPAPVLGGQGLSGPCTRSGRLVPLAPGSEGL----STWASSCRGGTGSPSTAGLPALTTL 69
GP V G G GP GR PG GL G G P GLP L
Sbjct: 696 GPKGVDGLPGDMGPPGTPGR-----PGFNGLPGNPGVQGQKGEPGVGLPGLKGLPGL--- 747
Query: 70 ELSPGLSHLPAGQGS 84
PG+ P +GS
Sbjct: 748 ---PGIPGTPGEKGS 759
Score = 26.6 bits (57), Expect = 6.3
Identities = 19/66 (28%), Positives = 28/66 (42%), Gaps = 5/66 (7%)
Query: 20 GGQGLSGPCTRSGRL-VPLAPGSEGLSTWASSCRGGTGSPSTAGLPALTTLELSPGLSHL 78
G +G GP + G P PG++G G +G P GLP + + PG +
Sbjct: 67 GPEGPQGPPGQKGDTGEPGLPGTKG----TRGPPGASGYPGNPGLPGIPGQDGPPGPPGI 122
Query: 79 PAGQGS 84
P G+
Sbjct: 123 PGCNGT 128
Score = 26.6 bits (57), Expect = 6.3
Identities = 20/67 (29%), Positives = 25/67 (37%), Gaps = 4/67 (5%)
Query: 20 GGQGLSGPCTRSGRLVPLAPGSEGLSTWASSCRGGTGSPSTAGLPALTTLELSPGLSHLP 79
G G G + G P PG +G+ G G P T G P L +PG+
Sbjct: 676 GLPGEKGAVGQPGIGFPGPPGPKGVD----GLPGDMGPPGTPGRPGFNGLPGNPGVQGQK 731
Query: 80 AGQGSGL 86
G GL
Sbjct: 732 GEPGVGL 738
Score = 26.2 bits (56), Expect = 8.2
Identities = 24/76 (31%), Positives = 28/76 (36%), Gaps = 6/76 (7%)
Query: 8 GTWVARGPAPVLGGQGLSGPCTRSGRLVPLAPGSEGLSTWASSCRGGTGSPSTAGLPALT 67
GT RGP G G G G+ P PG G+ C G G G P L
Sbjct: 88 GTKGTRGPPGASGYPGNPGLPGIPGQDGP--PGPPGIP----GCNGTKGERGPLGPPGLP 141
Query: 68 TLELSPGLSHLPAGQG 83
+PG LP +G
Sbjct: 142 GFAGNPGPPGLPGMKG 157
Score = 26.2 bits (56), Expect = 8.2
Identities = 24/74 (32%), Positives = 29/74 (39%), Gaps = 8/74 (10%)
Query: 14 GPAPVLGGQGLSGPCTRSGRLVPLAPGSEGLSTWASSCRGGTGSPSTAGLPALTTLELSP 73
G A V G QG G + G A G G + +G G P G P +T SP
Sbjct: 507 GVAGVPGPQGTPGLIGQPG-----AKGEPGEFYFDLRLKGDKGDPGFPGQPGMTGRAGSP 561
Query: 74 GLS---HLPAGQGS 84
G LP +GS
Sbjct: 562 GRDGHPGLPGPKGS 575
>gi|4502961 alpha 1 type VII collagen precursor [Homo sapiens]
Length = 2944
Score = 33.9 bits (76), Expect = 0.039
Identities = 31/108 (28%), Positives = 41/108 (37%), Gaps = 6/108 (5%)
Query: 14 GPAPVLGGQG---LSGPCTRSGRLVPLAPGSEGLSTWASSCRGGTGSPSTAGLPALTTLE 70
GP+ ++G QG L G +G+ P APG +G S RG G P + GLP +
Sbjct: 2233 GPSGLVGPQGSPGLPGQVGETGK--PGAPGRDGASG-KDGDRGSPGVPGSPGLPGPVGPK 2289
Query: 71 LSPGLSHLPAGQGSGLAACHAQASLRWAPCEARASRMGASHCSTAPGP 118
PG + P GL + GA PGP
Sbjct: 2290 GEPGPTGAPGQAVVGLPGAKGEKGAPGGLAGDLVGEPGAKGDRGLPGP 2337
Score = 33.1 bits (74), Expect = 0.067
Identities = 25/65 (38%), Positives = 27/65 (41%), Gaps = 7/65 (10%)
Query: 13 RGPAPVLGGQG---LSGPCTRSGRLVPLAPGSEGLSTWASSCRGGTGSPSTAGLPALTTL 69
RG +LG QG L GP G+ P PG G RG TGS GLP L
Sbjct: 1877 RGAPGILGPQGPPGLPGPVGPPGQGFPGVPGGTG----PKGDRGETGSKGEQGLPGERGL 1932
Query: 70 ELSPG 74
PG
Sbjct: 1933 RGEPG 1937
Score = 31.6 bits (70), Expect = 0.19
Identities = 39/120 (32%), Positives = 41/120 (34%), Gaps = 19/120 (15%)
Query: 13 RGPAPVLGGQGLSGPCTRSGRLVPLAP-GSEGLSTWASSC----RGGTGSPSTAGLPALT 67
RGP +GG G GP G P P G GL RG TG GLP
Sbjct: 2173 RGPPGPVGGHGDPGPPGAPGLAGPAGPQGPSGLKGEPGETGPPGRGLTGPTGAVGLPG-- 2230
Query: 68 TLELSPGLSHLPAGQGS-GLAACHAQASLRWAPCEARASRMGASHCSTA-------PGPV 119
PG S L QGS GL + AP AS S PGPV
Sbjct: 2231 ----PPGPSGLVGPQGSPGLPGQVGETGKPGAPGRDGASGKDGDRGSPGVPGSPGLPGPV 2286
Score = 30.0 bits (66), Expect = 0.57
Identities = 26/71 (36%), Positives = 31/71 (43%), Gaps = 3/71 (4%)
Query: 13 RGPAPVLGGQGLSGPCTRSGRLVPLAPGSEGLSTWASSCRGGTGSPSTAGLPALTTLELS 72
RGPA G +G G RSG + PG+ G S + G G P GLP L +
Sbjct: 1763 RGPAGEKGDRGPPGLDGRSG--LDGKPGAAGPSG-PNGAAGKAGDPGRDGLPGLRGEQGL 1819
Query: 73 PGLSHLPAGQG 83
PG S P G
Sbjct: 1820 PGPSGPPGLPG 1830
Score = 27.7 bits (60), Expect = 2.8
Identities = 23/60 (38%), Positives = 27/60 (45%), Gaps = 6/60 (10%)
Query: 20 GGQGLSGPCTRSGRLVPLA----PGSEGLSTWASSCRGGTGSPSTAGLPALTTLELSPGL 75
G +GL+GP R G PL PGS G AS +G G P GLP PG+
Sbjct: 2422 GERGLAGPPGREGIPGPLGPPGPPGSVG-PPGASGLKGDKGDPG-VGLPGPRGERGEPGI 2479
>gi|117414137 retinitis pigmentosa 1-like 1 [Homo sapiens]
Length = 2400
Score = 33.9 bits (76), Expect = 0.039
Identities = 33/114 (28%), Positives = 46/114 (40%), Gaps = 3/114 (2%)
Query: 4 EACAGTWVARGPAPVLGGQGLSGPCTRSGRLVPLAPGSEGLSTWASSCRGG-TGSPSTAG 62
E AG + P + G GL GP + GRL P A EG S+ +S+ G GS G
Sbjct: 492 ERKAGGSLGEDPGLCIDGAGLGGP-EQGGRLTPRARSEEGASSDSSASTGSHEGSSEWGG 550
Query: 63 LPALTTLELSPGLSHLPAGQGSGLAA-CHAQASLRWAPCEARASRMGASHCSTA 115
P + S A +G A+ + +SLR +A G + A
Sbjct: 551 RPQGCPGKARAETSQQEASEGGDPASPALSLSSLRSDDLQAETQGQGTEQATGA 604
Score = 26.6 bits (57), Expect = 6.3
Identities = 17/49 (34%), Positives = 22/49 (44%), Gaps = 4/49 (8%)
Query: 79 PAGQGSGLAACHAQASLRWAPCEARASRM----GASHCSTAPGPVHCPR 123
P+ + S L + R PC R S G+SH STA GP P+
Sbjct: 841 PSPEASWLCGRYCPTPPRGRPCPQRRSSSCGSTGSSHQSTARGPGGSPQ 889
>gi|115511036 alpha-kinase 3 [Homo sapiens]
Length = 1907
Score = 33.9 bits (76), Expect = 0.039
Identities = 30/96 (31%), Positives = 42/96 (43%), Gaps = 3/96 (3%)
Query: 24 LSGPCTRSGRLVPLAPGSEGLSTWA-SSCRGGTG-SPSTAGLPALTTLELSPGLSHLPAG 81
L PCT S RL L A ++ RG G PS+ +PA+ E PGL+ A
Sbjct: 1233 LLSPCT-SRRLTGLLDREVQAGRQALAAARGSWGPGPSSLTVPAIVVDEEDPGLASEGAS 1291
Query: 82 QGSGLAACHAQASLRWAPCEARASRMGASHCSTAPG 117
+G G + L + + A R+G + APG
Sbjct: 1292 EGEGEVSPEGPGLLGASQESSMAGRLGEAGGQAAPG 1327
>gi|115392133 collagen, type XXIV, alpha 1 [Homo sapiens]
Length = 1714
Score = 33.9 bits (76), Expect = 0.039
Identities = 24/70 (34%), Positives = 30/70 (42%), Gaps = 6/70 (8%)
Query: 14 GPAPVLGGQGLSGPCTRSGRLVPLAPGSEGLSTWASSCRGGTGSPSTAGLPALTTLELSP 73
GP + G G G G++ P PG +GL RGG G AG P ++ S
Sbjct: 1288 GPKGIQGYHGADGISGNPGKIGP--PGKQGLP----GIRGGPGRTGLAGAPGPPGVKGSS 1341
Query: 74 GLSHLPAGQG 83
GL P QG
Sbjct: 1342 GLPGSPGIQG 1351
Score = 29.6 bits (65), Expect = 0.74
Identities = 24/72 (33%), Positives = 27/72 (37%)
Query: 12 ARGPAPVLGGQGLSGPCTRSGRLVPLAPGSEGLSTWASSCRGGTGSPSTAGLPALTTLEL 71
+RGP +LG QG+ G G P T RG G P GLP T
Sbjct: 928 SRGPDGLLGEQGIQGAKGEKGDQGKRGPHGLIGKTGNPGERGFQGKPGLQGLPGSTGDRG 987
Query: 72 SPGLSHLPAGQG 83
PG L QG
Sbjct: 988 LPGEPGLRGLQG 999
Score = 26.6 bits (57), Expect = 6.3
Identities = 21/67 (31%), Positives = 26/67 (38%), Gaps = 6/67 (8%)
Query: 4 EACAGTWVARGPAPVLGGQGLSGPCTRSGRLVPLA----PGSEGL--STWASSCRGGTGS 57
E AG GP +G +G +GP R G + P G +G T RG G
Sbjct: 1410 EGDAGIVGISGPKGPIGHRGNTGPLGREGIIGPTGRTGPRGEKGFRGETGPQGPRGQPGP 1469
Query: 58 PSTAGLP 64
P G P
Sbjct: 1470 PGPPGAP 1476
>gi|110349772 alpha 1 type I collagen preproprotein [Homo sapiens]
Length = 1464
Score = 33.5 bits (75), Expect = 0.051
Identities = 24/57 (42%), Positives = 27/57 (47%), Gaps = 7/57 (12%)
Query: 13 RGPAPVLGGQGLSGPCTRSGRLVPLAPGSEGL-----STWASSCRGGTGSPSTAGLP 64
RGP +G GL+GP SGR APG+EG S A RG TG G P
Sbjct: 994 RGPPGPMGPPGLAGPPGESGR--EGAPGAEGSPGRDGSPGAKGDRGETGPAGPPGAP 1048
Score = 32.7 bits (73), Expect = 0.087
Identities = 24/73 (32%), Positives = 34/73 (46%), Gaps = 5/73 (6%)
Query: 12 ARGPAPVLGGQGLSGPCTRSG-RLVPLAPGSEGLSTWASSCRGGTGSPSTAGLPALTTLE 70
ARG G +G+ GP +G R APG++G A G G+P + G P L +
Sbjct: 675 ARGERGFPGERGVQGPPGPAGPRGANGAPGNDG----AKGDAGAPGAPGSQGAPGLQGMP 730
Query: 71 LSPGLSHLPAGQG 83
G + LP +G
Sbjct: 731 GERGAAGLPGPKG 743
Score = 31.2 bits (69), Expect = 0.25
Identities = 37/131 (28%), Positives = 45/131 (34%), Gaps = 23/131 (17%)
Query: 12 ARGPAPVLGGQGLSGPCTRSGRLVPLAPGSEGLS-----------------TWASSCRGG 54
ARGP+ G G GP SG P APGS+G + RG
Sbjct: 414 ARGPSGPQGPGGPPGPKGNSGE--PGAPGSKGDTGAKGEPGPVGVQGPPGPAGEEGKRGA 471
Query: 55 TGSPSTAGLPALTTLELSPGLSHLPAGQGSGLAACHAQASLRWAPCEARASRMGASHCST 114
G P GLP PG P G+A A R +P A G+ +
Sbjct: 472 RGEPGPTGLPGPPGERGGPGSRGFPG--ADGVAGPKGPAGERGSP--GPAGPKGSPGEAG 527
Query: 115 APGPVHCPRAE 125
PG P A+
Sbjct: 528 RPGEAGLPGAK 538
Score = 30.8 bits (68), Expect = 0.33
Identities = 38/123 (30%), Positives = 45/123 (36%), Gaps = 18/123 (14%)
Query: 7 AGTWVARGPAPVLGGQGLSG-PCTRSGRLVPLAPGSEGLS-----TWASSCRGGTGS--- 57
AG GP + G +G+ G P R R P PG G + AS RG G
Sbjct: 943 AGAPGTPGPQGIAGQRGVVGLPGQRGERGFPGLPGPSGEPGKQGPSGASGERGPPGPMGP 1002
Query: 58 PSTAGLPALTTLELSPGLSHLPAGQGS-GLAACHAQASLRWAPCEARASRMGASHCSTAP 116
P AG P + E +PG P GS G + P GA AP
Sbjct: 1003 PGLAGPPGESGREGAPGAEGSPGRDGSPGAKGDRGETGPAGPP--------GAPGAPGAP 1054
Query: 117 GPV 119
GPV
Sbjct: 1055 GPV 1057
Score = 28.5 bits (62), Expect = 1.6
Identities = 22/64 (34%), Positives = 24/64 (37%), Gaps = 3/64 (4%)
Query: 14 GPAPVLGGQGLSGPCTRSGRLVPLAPGSEGLSTWASSCRGGTGS---PSTAGLPALTTLE 70
GP GG G G G P P E S + +G G P AGLP L
Sbjct: 482 GPPGERGGPGSRGFPGADGVAGPKGPAGERGSPGPAGPKGSPGEAGRPGEAGLPGAKGLT 541
Query: 71 LSPG 74
SPG
Sbjct: 542 GSPG 545
Score = 28.5 bits (62), Expect = 1.6
Identities = 30/112 (26%), Positives = 42/112 (37%), Gaps = 7/112 (6%)
Query: 14 GPAPVLGGQGLSGPCTRSGRLVPLAPGSEGLSTWASSCRGGTGSPSTAGLP---ALTTLE 70
GPA G +G +GP +G + P+ +G TG G+ + L+
Sbjct: 1058 GPAGKSGDRGETGPAGPAGPVGPVGARGPAGPQGPRGDKGETGEQGDRGIKGHRGFSGLQ 1117
Query: 71 LSPGLSHLPAGQGSGLAACHAQASLRWAPCEARASRMGASHCSTAPGPVHCP 122
PG P QG A+ A R P A A G + PGP+ P
Sbjct: 1118 GPPGPPGSPGEQGPSGAS--GPAGPRGPPGSAGAP--GKDGLNGLPGPIGPP 1165
Score = 28.1 bits (61), Expect = 2.2
Identities = 19/65 (29%), Positives = 24/65 (36%)
Query: 12 ARGPAPVLGGQGLSGPCTRSGRLVPLAPGSEGLSTWASSCRGGTGSPSTAGLPALTTLEL 71
A+G G +G +GP +G P P + A RG G P G P
Sbjct: 825 AKGEPGDAGAKGDAGPPGPAGPAGPPGPIGNVGAPGAKGARGSAGPPGATGFPGAAGRVG 884
Query: 72 SPGLS 76
PG S
Sbjct: 885 PPGPS 889
Score = 28.1 bits (61), Expect = 2.2
Identities = 23/64 (35%), Positives = 27/64 (42%), Gaps = 6/64 (9%)
Query: 20 GGQGLSGPCTRSGRLVPLAPGSEGLSTWASSCRGGTGSPSTAGLPALTTLELSPGLSHLP 79
G GL GP G +PG +G S AS G G P +AG P L PG P
Sbjct: 1112 GFSGLQGPPGPPG-----SPGEQGPSG-ASGPAGPRGPPGSAGAPGKDGLNGLPGPIGPP 1165
Query: 80 AGQG 83
+G
Sbjct: 1166 GPRG 1169
Score = 27.7 bits (60), Expect = 2.8
Identities = 20/60 (33%), Positives = 24/60 (40%), Gaps = 9/60 (15%)
Query: 7 AGTWVARGPAPVLGGQGLSGPCTRSGRLVPLAPGSEGLSTWASSCRGGTGSPSTAGLPAL 66
+G RGP G G G + GR PG G +G G P TAGLP +
Sbjct: 214 SGPMGPRGPPGPPGKNGDDGEAGKPGR-----PGERG----PPGPQGARGLPGTAGLPGM 264
Score = 27.3 bits (59), Expect = 3.7
Identities = 17/52 (32%), Positives = 22/52 (42%), Gaps = 3/52 (5%)
Query: 14 GPAPVLGGQGL---SGPCTRSGRLVPLAPGSEGLSTWASSCRGGTGSPSTAG 62
GPA GG+G +GP R G + P P + G G+P T G
Sbjct: 899 GPAGKEGGKGPRGETGPAGRPGEVGPPGPPGPAGEKGSPGADGPAGAPGTPG 950
Score = 26.9 bits (58), Expect = 4.8
Identities = 21/73 (28%), Positives = 29/73 (39%), Gaps = 9/73 (12%)
Query: 12 ARGPAPVLGGQGLSGPCTRSGRLVPLAPGSEGLSTWASSCRGGTGSPSTAGLPALTTLEL 71
A+G A G +G GP G P PG G + G G+P G P
Sbjct: 351 AKGEAGPQGPRGSEGPQGVRGE--PGPPGPAGAA-------GPAGNPGADGQPGAKGANG 401
Query: 72 SPGLSHLPAGQGS 84
+PG++ P G+
Sbjct: 402 APGIAGAPGFPGA 414
Score = 26.9 bits (58), Expect = 4.8
Identities = 22/71 (30%), Positives = 27/71 (38%), Gaps = 9/71 (12%)
Query: 14 GPAPVLGGQGLSGPCTRSGRLVPLAPGSEGLSTWASSCRGGTGSPSTAGLPALTTLELSP 73
GPA G +G SGP +G G+ G A RG G P AG + P
Sbjct: 773 GPAGAPGDKGESGPSGPAG-----PTGARG----APGDRGEPGPPGPAGFAGPPGADGQP 823
Query: 74 GLSHLPAGQGS 84
G P G+
Sbjct: 824 GAKGEPGDAGA 834
Score = 26.6 bits (57), Expect = 6.3
Identities = 21/62 (33%), Positives = 26/62 (41%), Gaps = 7/62 (11%)
Query: 7 AGTWVARGPAPVLGGQGLSGPCTRSGRLVPLAPGSEGL-----STWASSCRGGTGSPSTA 61
AG +GPA G QGL GP G PG +G+ + S RG G P
Sbjct: 628 AGERGEQGPAGSPGFQGLPGPAGPPGEAG--KPGEQGVPGDLGAPGPSGARGERGFPGER 685
Query: 62 GL 63
G+
Sbjct: 686 GV 687
>gi|7662162 ALEX2 protein [Homo sapiens]
Length = 632
Score = 33.5 bits (75), Expect = 0.051
Identities = 26/82 (31%), Positives = 36/82 (43%), Gaps = 5/82 (6%)
Query: 4 EACAGTWVARGP---AP--VLGGQGLSGPCTRSGRLVPLAPGSEGLSTWASSCRGGTGSP 58
EA A T V GP AP V G++ P + VP P T A+ G +GSP
Sbjct: 186 EAAAPTEVTEGPGVAAPTKVAEAPGVASPTEAAEAPVPATPTGAAAPTGAAESPGTSGSP 245
Query: 59 STAGLPALTTLELSPGLSHLPA 80
TA +P + + + +H A
Sbjct: 246 RTAVVPGTSAAKKATPGAHTGA 267
>gi|29540562 ALEX2 protein [Homo sapiens]
Length = 632
Score = 33.5 bits (75), Expect = 0.051
Identities = 26/82 (31%), Positives = 36/82 (43%), Gaps = 5/82 (6%)
Query: 4 EACAGTWVARGP---AP--VLGGQGLSGPCTRSGRLVPLAPGSEGLSTWASSCRGGTGSP 58
EA A T V GP AP V G++ P + VP P T A+ G +GSP
Sbjct: 186 EAAAPTEVTEGPGVAAPTKVAEAPGVASPTEAAEAPVPATPTGAAAPTGAAESPGTSGSP 245
Query: 59 STAGLPALTTLELSPGLSHLPA 80
TA +P + + + +H A
Sbjct: 246 RTAVVPGTSAAKKATPGAHTGA 267
>gi|73486666 alpha 1 type IX collagen isoform 1 precursor [Homo
sapiens]
Length = 921
Score = 33.1 bits (74), Expect = 0.067
Identities = 24/67 (35%), Positives = 32/67 (47%), Gaps = 4/67 (5%)
Query: 13 RGPAPVLGGQGLSGPCTRSGRLVPLA---PGSEGLSTWASSCRGG-TGSPSTAGLPALTT 68
RGP LG +G GP R +P A PG G +++ + R G G P AG+P +
Sbjct: 831 RGPKGDLGEKGERGPPGRGPNGLPGAIGLPGDPGPASYGRNGRDGERGPPGVAGIPGVPG 890
Query: 69 LELSPGL 75
PGL
Sbjct: 891 PPGPPGL 897
Score = 27.7 bits (60), Expect = 2.8
Identities = 21/60 (35%), Positives = 23/60 (38%), Gaps = 9/60 (15%)
Query: 12 ARGPAPVLGGQGLSGPCTRSGRL-------VPLAPGSEGLSTWASSCRGGTGSPSTAGLP 64
A G G GL+GP G + P PGS G G G P TAGLP
Sbjct: 315 APGKPGTPGADGLTGPDGSPGSIGSKGQKGEPGVPGSRGFP--GRGIPGPPGPPGTAGLP 372
Score = 27.7 bits (60), Expect = 2.8
Identities = 23/77 (29%), Positives = 31/77 (40%), Gaps = 6/77 (7%)
Query: 7 AGTWVARGPAPVLGGQGLSGPCTRSGRLVPLAPGSEGLSTWASSCRGGTGSPSTAGLPAL 66
AG RG G GL GP +G +P G +G+ G G P G P
Sbjct: 513 AGPKGDRGAEGARGIPGLPGPKGDTG--LPGVDGRDGIP----GMPGTKGEPGKPGPPGD 566
Query: 67 TTLELSPGLSHLPAGQG 83
L+ PG+ +P +G
Sbjct: 567 AGLQGLPGVPGIPGAKG 583
Score = 26.2 bits (56), Expect = 8.2
Identities = 24/76 (31%), Positives = 29/76 (38%), Gaps = 6/76 (7%)
Query: 8 GTWVARGPAPVLGGQGLSGPCTRSGRLVPLAPGSEGLSTWASSCRGGTGSPSTAGLPALT 67
G+ A G +G G G G + P P +GL RG G + GLP
Sbjct: 589 GSTGAPGKPGQMGNSGKPGQQGPPGEVGPRGP--QGLP----GSRGELGPVGSPGLPGKL 642
Query: 68 TLELSPGLSHLPAGQG 83
SPGL LP G
Sbjct: 643 GSLGSPGLPGLPGPPG 658
>gi|18105032 type X collagen alpha 1 precursor [Homo sapiens]
Length = 680
Score = 33.1 bits (74), Expect = 0.067
Identities = 26/72 (36%), Positives = 30/72 (41%), Gaps = 5/72 (6%)
Query: 13 RGPAPVLGGQGLSGPCTRSGRLVPLA-PGSEGLSTWASSCRGGTGSPSTAGLPALTTLEL 71
+GPA + G GL+GP G P PGS GL +G TG AG P
Sbjct: 325 QGPAGLPGKPGLTGPPGNMGPQGPKGIPGSHGL----PGPKGETGPAGPAGYPGAKGERG 380
Query: 72 SPGLSHLPAGQG 83
SPG P G
Sbjct: 381 SPGSDGKPGYPG 392
Score = 32.0 bits (71), Expect = 0.15
Identities = 24/79 (30%), Positives = 31/79 (39%), Gaps = 5/79 (6%)
Query: 8 GTWVARGPAPVLGGQGLSGPCTRSGRLVPLA-PGSEGLSTWASSCRGGTGSPSTAGLPAL 66
G +GP + G GL GP +G P PG++G G G P G P L
Sbjct: 341 GNMGPQGPKGIPGSHGLPGPKGETGPAGPAGYPGAKG----ERGSPGSDGKPGYPGKPGL 396
Query: 67 TTLELSPGLSHLPAGQGSG 85
+ +PGL G G
Sbjct: 397 DGPKGNPGLPGPKGDPGVG 415
Score = 30.4 bits (67), Expect = 0.43
Identities = 23/83 (27%), Positives = 32/83 (38%), Gaps = 15/83 (18%)
Query: 13 RGPAPVLGGQGLSGPCTRSGRLVPLAP----------GSEGLSTWASSCRGGTGSPSTAG 62
RG V G G+ G G + P+ P G EG+ G G+P G
Sbjct: 222 RGENGVPGQPGIKGDRGFPGEMGPIGPPGPQGPPGERGPEGIGK-----PGAAGAPGQPG 276
Query: 63 LPALTTLELSPGLSHLPAGQGSG 85
+P L +PG++ P G G
Sbjct: 277 IPGTKGLPGAPGIAGPPGPPGFG 299
Score = 29.3 bits (64), Expect = 0.97
Identities = 23/72 (31%), Positives = 31/72 (43%), Gaps = 2/72 (2%)
Query: 13 RGPAPVLGGQGLSGPCTRSGRLVPLAPGSEGLSTWASSCRGGTGSPSTAGLPALTTLELS 72
+GP G +G+ P P PG++GL A G G P G P L L+
Sbjct: 252 QGPPGERGPEGIGKPGAAGAPGQPGIPGTKGLPG-APGIAGPPGPPGF-GKPGLPGLKGE 309
Query: 73 PGLSHLPAGQGS 84
G + LP G G+
Sbjct: 310 RGPAGLPGGPGA 321
Score = 27.7 bits (60), Expect = 2.8
Identities = 23/67 (34%), Positives = 25/67 (37%), Gaps = 8/67 (11%)
Query: 8 GTWVARGPAPVLGGQGLSGPCTRSGRLVPLAPGSEGLSTWASSCRGGTGSPSTAGLPALT 67
GT GPA G G SGP + G P G GL G PS G P +
Sbjct: 60 GTPGPPGPAGPRGHPGPSGPPGKPGYGSPGLQGEPGLP--------GPPGPSAVGKPGVP 111
Query: 68 TLELSPG 74
L PG
Sbjct: 112 GLPGKPG 118
>gi|32140760 collagen, type XXVII, alpha 1 [Homo sapiens]
Length = 1860
Score = 33.1 bits (74), Expect = 0.067
Identities = 25/70 (35%), Positives = 32/70 (45%), Gaps = 6/70 (8%)
Query: 14 GPAPVLGGQGLSGPCTRSGRLVPLAPGSEGLSTWASSCRGGTGSPSTAGLPALTTLELSP 73
GPA G +GL GP GR P PG +G+ + RG GS G+P + +
Sbjct: 1072 GPAGEQGSRGLKGPPGPQGR--PGRPGQQGV----AGERGHLGSRGFPGIPGPSGPPGTK 1125
Query: 74 GLSHLPAGQG 83
GL P QG
Sbjct: 1126 GLPGEPGPQG 1135
Score = 26.2 bits (56), Expect = 8.2
Identities = 14/33 (42%), Positives = 17/33 (51%), Gaps = 1/33 (3%)
Query: 13 RGPAPVLGGQGLSGPCTRSGRLVPL-APGSEGL 44
+GP +G GL G G L PL PG +GL
Sbjct: 1149 KGPPGAVGEPGLPGEAGMKGDLGPLGTPGEQGL 1181
>gi|73486664 alpha 1 type IX collagen isoform 2 precursor [Homo
sapiens]
Length = 678
Score = 33.1 bits (74), Expect = 0.067
Identities = 24/67 (35%), Positives = 32/67 (47%), Gaps = 4/67 (5%)
Query: 13 RGPAPVLGGQGLSGPCTRSGRLVPLA---PGSEGLSTWASSCRGG-TGSPSTAGLPALTT 68
RGP LG +G GP R +P A PG G +++ + R G G P AG+P +
Sbjct: 588 RGPKGDLGEKGERGPPGRGPNGLPGAIGLPGDPGPASYGRNGRDGERGPPGVAGIPGVPG 647
Query: 69 LELSPGL 75
PGL
Sbjct: 648 PPGPPGL 654
Score = 27.7 bits (60), Expect = 2.8
Identities = 21/60 (35%), Positives = 23/60 (38%), Gaps = 9/60 (15%)
Query: 12 ARGPAPVLGGQGLSGPCTRSGRL-------VPLAPGSEGLSTWASSCRGGTGSPSTAGLP 64
A G G GL+GP G + P PGS G G G P TAGLP
Sbjct: 72 APGKPGTPGADGLTGPDGSPGSIGSKGQKGEPGVPGSRGFP--GRGIPGPPGPPGTAGLP 129
Score = 27.7 bits (60), Expect = 2.8
Identities = 23/77 (29%), Positives = 31/77 (40%), Gaps = 6/77 (7%)
Query: 7 AGTWVARGPAPVLGGQGLSGPCTRSGRLVPLAPGSEGLSTWASSCRGGTGSPSTAGLPAL 66
AG RG G GL GP +G +P G +G+ G G P G P
Sbjct: 270 AGPKGDRGAEGARGIPGLPGPKGDTG--LPGVDGRDGIP----GMPGTKGEPGKPGPPGD 323
Query: 67 TTLELSPGLSHLPAGQG 83
L+ PG+ +P +G
Sbjct: 324 AGLQGLPGVPGIPGAKG 340
Score = 26.2 bits (56), Expect = 8.2
Identities = 24/76 (31%), Positives = 29/76 (38%), Gaps = 6/76 (7%)
Query: 8 GTWVARGPAPVLGGQGLSGPCTRSGRLVPLAPGSEGLSTWASSCRGGTGSPSTAGLPALT 67
G+ A G +G G G G + P P +GL RG G + GLP
Sbjct: 346 GSTGAPGKPGQMGNSGKPGQQGPPGEVGPRGP--QGLP----GSRGELGPVGSPGLPGKL 399
Query: 68 TLELSPGLSHLPAGQG 83
SPGL LP G
Sbjct: 400 GSLGSPGLPGLPGPPG 415
>gi|48762934 alpha 2 type I collagen [Homo sapiens]
Length = 1366
Score = 32.7 bits (73), Expect = 0.087
Identities = 26/78 (33%), Positives = 32/78 (41%), Gaps = 15/78 (19%)
Query: 7 AGTWVARGPAPVLGGQGLSGPCTRSGRLVPLAPGSEGLSTWASSCRGGTGSPSTAGLPAL 66
AG GP +G GLSGP G PG+ GL+ +G G P AG P L
Sbjct: 273 AGPAGPAGPRGEVGLPGLSGPVGPPGN-----PGANGLT----GAKGAAGLPGVAGAPGL 323
Query: 67 TTLELSPGLSHLPAGQGS 84
PG +P G+
Sbjct: 324 ------PGPRGIPGPVGA 335
Score = 30.0 bits (66), Expect = 0.57
Identities = 30/85 (35%), Positives = 32/85 (37%), Gaps = 16/85 (18%)
Query: 7 AGTWVARG----PAPVLGGQGLSGPCTRSGRLVPLAP----GSEGLSTWASSCRGGTGSP 58
AG ARG P P G +G SG G P P G EG RG G
Sbjct: 336 AGATGARGLVGEPGPA-GSKGESGNKGEPGSAGPQGPPGPSGEEGK-------RGPNGEA 387
Query: 59 STAGLPALTTLELSPGLSHLPAGQG 83
+AG P L SPG LP G
Sbjct: 388 GSAGPPGPPGLRGSPGSRGLPGADG 412
Score = 29.6 bits (65), Expect = 0.74
Identities = 24/73 (32%), Positives = 29/73 (39%), Gaps = 9/73 (12%)
Query: 12 ARGPAPVLGGQGLSGPCTRSGRLVPLAPGSEGLSTWASSCRGGTGSPSTAGLPALTTLEL 71
ARGPA G G G + GR PG G+ +G G P T GLP +
Sbjct: 131 ARGPAGPPGKAGEDGHPGKPGR-----PGERGVV----GPQGARGFPGTPGLPGFKGIRG 181
Query: 72 SPGLSHLPAGQGS 84
GL L G+
Sbjct: 182 HNGLDGLKGQPGA 194
Score = 27.7 bits (60), Expect = 2.8
Identities = 20/70 (28%), Positives = 28/70 (40%), Gaps = 3/70 (4%)
Query: 14 GPAPVLGGQGLSGPCTRSGRLVPLAPGSEGLSTWASSCRGGTGSPSTAGLPALTTLELSP 73
G + G +G GP R+G + + P S G G P T G L +P
Sbjct: 814 GKEGLRGPRGDQGPVGRTGEVGAVGPPGFAGEKGPSGEAGTAGPPGTPGPQGLLG---AP 870
Query: 74 GLSHLPAGQG 83
G+ LP +G
Sbjct: 871 GILGLPGSRG 880
Score = 27.3 bits (59), Expect = 3.7
Identities = 29/91 (31%), Positives = 37/91 (40%), Gaps = 10/91 (10%)
Query: 3 GEA-CAGTWVARGPAPVLGGQGLSG-PCTRSGRLVPLA------PGSEGLS--TWASSCR 52
GEA AG GP +LG G+ G P +R R +P PG G++ A
Sbjct: 850 GEAGTAGPPGTPGPQGLLGAPGILGLPGSRGERGLPGVAGAVGEPGPLGIAGPPGARGPP 909
Query: 53 GGTGSPSTAGLPALTTLELSPGLSHLPAGQG 83
G GSP G P + +PG P G
Sbjct: 910 GAVGSPGVNGAPGEAGRDGNPGNDGPPGRDG 940
Score = 26.9 bits (58), Expect = 4.8
Identities = 24/77 (31%), Positives = 31/77 (40%), Gaps = 6/77 (7%)
Query: 7 AGTWVARGPAPVLGGQGLSGPCTRSGRLVPLAPGSEGLSTWASSCRGGTGSPSTAGLPAL 66
AG RGP G G +GP G P PG +G G G+ TAG
Sbjct: 585 AGPRGERGPPGESGAAGPTGPIGSRGPSGP--PGPDG----NKGEPGVVGAVGTAGPSGP 638
Query: 67 TTLELSPGLSHLPAGQG 83
+ L G + +P G+G
Sbjct: 639 SGLPGERGAAGIPGGKG 655
Score = 26.2 bits (56), Expect = 8.2
Identities = 26/73 (35%), Positives = 31/73 (42%), Gaps = 7/73 (9%)
Query: 7 AGTWVARGPAPVL---GGQGLSGPCTRSGRLVPLAPGSEGLSTWAS--SCRGGTGSPSTA 61
AG+ GP + G +GL G R+G + P PGS G S A G G P
Sbjct: 387 AGSAGPPGPPGLRGSPGSRGLPGADGRAGVMGP--PGSRGASGPAGVRGPNGDAGRPGEP 444
Query: 62 GLPALTTLELSPG 74
GL L SPG
Sbjct: 445 GLMGPRGLPGSPG 457
Score = 26.2 bits (56), Expect = 8.2
Identities = 19/50 (38%), Positives = 21/50 (42%), Gaps = 9/50 (18%)
Query: 14 GPAPVLGGQGLSGPCTRSGRLVPLAPGSEGLSTWASSCRGGTGSPSTAGL 63
GP V GG+G GP P PG +GL S G G P GL
Sbjct: 535 GPQGVQGGKGEQGP--------PGPPGFQGL-PGPSGPAGEVGKPGERGL 575
Score = 26.2 bits (56), Expect = 8.2
Identities = 22/63 (34%), Positives = 26/63 (41%), Gaps = 6/63 (9%)
Query: 14 GPAPVLGGQGLSGPCTRSGRLVPLAPGSEGLSTWASSCRGGTGSPSTAGLPALTTLELSP 73
GPA G G SGP + GR PG+ G + RG G AG P P
Sbjct: 1048 GPAGPRGPAGPSGPAGKDGRTG--HPGTVG----PAGIRGPQGHQGPAGPPGPPGPPGPP 1101
Query: 74 GLS 76
G+S
Sbjct: 1102 GVS 1104
>gi|185136021 spinster homolog 2 [Homo sapiens]
Length = 549
Score = 32.3 bits (72), Expect = 0.11
Identities = 29/84 (34%), Positives = 30/84 (35%), Gaps = 2/84 (2%)
Query: 13 RGPAPVLGGQGLSGPCTRSGRLVPLAPGSEGLSTWASSCRGGTGSPSTAGLPALTTLELS 72
RG GG G G G V A G E + S R TG P T G P
Sbjct: 28 RGAQRGAGGSGCCGARGAGGAGVSAA-GDEVQTLSGSVRRAPTGPPGTPGTPGCAATAKG 86
Query: 73 PGLSH-LPAGQGSGLAACHAQASL 95
PG PA G G A A SL
Sbjct: 87 PGAQQPKPASLGRGRGAAAAILSL 110
>gi|111118976 collagen, type II, alpha 1 isoform 1 precursor [Homo
sapiens]
Length = 1487
Score = 32.3 bits (72), Expect = 0.11
Identities = 23/72 (31%), Positives = 27/72 (37%), Gaps = 8/72 (11%)
Query: 14 GPAPVLGGQGLSGPCTRSGRLVPL-APGSEGLSTWASSCRGGTGSPSTAGLPALTTLELS 72
GP GG G G G P A G EG +G G P T G P +
Sbjct: 357 GPVGPAGGPGFPGAPGAKGEAGPTGARGPEG-------AQGPRGEPGTPGSPGPAGASGN 409
Query: 73 PGLSHLPAGQGS 84
PG +P +GS
Sbjct: 410 PGTDGIPGAKGS 421
Score = 32.3 bits (72), Expect = 0.11
Identities = 22/70 (31%), Positives = 30/70 (42%), Gaps = 12/70 (17%)
Query: 14 GPAPVLGGQGLSGPCTRSGRLVPLAPGSEGLSTWASSCRGGTGSPSTAGLPALTTLELSP 73
GP G +G GP R P PGS G + G +G+P T G+P +P
Sbjct: 378 GPTGARGPEGAQGP-----RGEPGTPGSPGPA-------GASGNPGTDGIPGAKGSAGAP 425
Query: 74 GLSHLPAGQG 83
G++ P G
Sbjct: 426 GIAGAPGFPG 435
Score = 31.2 bits (69), Expect = 0.25
Identities = 24/78 (30%), Positives = 31/78 (39%), Gaps = 6/78 (7%)
Query: 12 ARGPAPVLGGQGLSGPCTRSGRLVPLAP----GSEGLS--TWASSCRGGTGSPSTAGLPA 65
A+G A G +G SG +G P+ P G G + A+ RG G P AG P
Sbjct: 298 AKGEAGAPGVKGESGSPGENGSPGPMGPRGLPGERGRTGPAGAAGARGNDGQPGPAGPPG 357
Query: 66 LTTLELSPGLSHLPAGQG 83
PG P +G
Sbjct: 358 PVGPAGGPGFPGAPGAKG 375
Score = 31.2 bits (69), Expect = 0.25
Identities = 23/73 (31%), Positives = 30/73 (41%), Gaps = 15/73 (20%)
Query: 12 ARGPAPVLGGQGLSGPCTRSGRLVPLAPGSEGLSTWASSCRGGTGSPSTAGLPALTTLEL 71
A+GP G G GP SG PG++G+ +G G+P AG P
Sbjct: 388 AQGPRGEPGTPGSPGPAGASGN-----PGTDGIP----GAKGSAGAPGIAGAPGF----- 433
Query: 72 SPGLSHLPAGQGS 84
PG P QG+
Sbjct: 434 -PGPRGPPGPQGA 445
Score = 30.8 bits (68), Expect = 0.33
Identities = 24/73 (32%), Positives = 27/73 (36%), Gaps = 3/73 (4%)
Query: 14 GPAPVLGGQGLSG-PCTRSGRLVPLAPGSEGL--STWASSCRGGTGSPSTAGLPALTTLE 70
GP + G +G+ G P R R P PG G A G G P G P LT
Sbjct: 972 GPQGLAGQRGIVGLPGQRGERGFPGLPGPSGEPGKQGAPGASGDRGPPGPVGPPGLTGPA 1031
Query: 71 LSPGLSHLPAGQG 83
PG P G
Sbjct: 1032 GEPGREGSPGADG 1044
Score = 30.8 bits (68), Expect = 0.33
Identities = 24/71 (33%), Positives = 31/71 (43%), Gaps = 8/71 (11%)
Query: 13 RGPAPVLGGQGLSGPCTRSGRLVPLAPGSEGL--STWASSCRGGTGSPSTAGLPALTTLE 70
RGP +G GL+GP GR +PG++G A+ +G G G P
Sbjct: 1016 RGPPGPVGPPGLTGPAGEPGR--EGSPGADGPPGRDGAAGVKGDRGETGAVGAPGAPGPP 1073
Query: 71 LSPGLSHLPAG 81
SPG PAG
Sbjct: 1074 GSPG----PAG 1080
Score = 28.9 bits (63), Expect = 1.3
Identities = 23/73 (31%), Positives = 27/73 (36%), Gaps = 7/73 (9%)
Query: 13 RGPAPVLGGQGLSGPCTRSGRLVPLAPGSEGLS--TWASSCRGGTGSPSTAGLPALTTLE 70
+G A G G GP SG APG +G + T RG G P G P
Sbjct: 851 QGEAGQKGDAGAPGPQGPSG-----APGPQGPTGVTGPKGARGAQGPPGATGFPGAAGRV 905
Query: 71 LSPGLSHLPAGQG 83
PG + P G
Sbjct: 906 GPPGSNGNPGPPG 918
Score = 28.5 bits (62), Expect = 1.6
Identities = 24/66 (36%), Positives = 25/66 (37%), Gaps = 7/66 (10%)
Query: 2 EGEA-CAGTWVARGPAPVLGGQGLSGPCTRSGRLVPLAPGSEGLSTWASSCRGGTGSPST 60
+GE AG GPA G QG GP G P P EG G G P
Sbjct: 635 DGETGAAGPPGPAGPAGERGEQGAPGPSGFQGLPGPPGPPGEG------GKPGDQGVPGE 688
Query: 61 AGLPAL 66
AG P L
Sbjct: 689 AGAPGL 694
Score = 28.1 bits (61), Expect = 2.2
Identities = 20/71 (28%), Positives = 25/71 (35%)
Query: 4 EACAGTWVARGPAPVLGGQGLSGPCTRSGRLVPLAPGSEGLSTWASSCRGGTGSPSTAGL 63
E G RG +G G +G G + P P + A RG TG P AG
Sbjct: 776 EGAPGKDGGRGLTGPIGPPGPAGANGEKGEVGPPGPAGSAGARGAPGERGETGPPGPAGF 835
Query: 64 PALTTLELSPG 74
+ PG
Sbjct: 836 AGPPGADGQPG 846
Score = 28.1 bits (61), Expect = 2.2
Identities = 22/75 (29%), Positives = 26/75 (34%), Gaps = 3/75 (4%)
Query: 12 ARGPAPVLGGQGLSG---PCTRSGRLVPLAPGSEGLSTWASSCRGGTGSPSTAGLPALTT 68
A+GP G G +G P +G P P RG +G P AG P L
Sbjct: 889 AQGPPGATGFPGAAGRVGPPGSNGNPGPPGPPGPSGKDGPKGARGDSGPPGRAGEPGLQG 948
Query: 69 LELSPGLSHLPAGQG 83
PG P G
Sbjct: 949 PAGPPGEKGEPGDDG 963
Score = 27.7 bits (60), Expect = 2.8
Identities = 22/70 (31%), Positives = 23/70 (32%)
Query: 14 GPAPVLGGQGLSGPCTRSGRLVPLAPGSEGLSTWASSCRGGTGSPSTAGLPALTTLELSP 73
GP G QG SGP SG P P A+ G G P G T P
Sbjct: 1143 GPPGPSGDQGASGPAGPSGPRGPPGPVGPSGKDGANGIPGPIGPPGPRGRSGETGPAGPP 1202
Query: 74 GLSHLPAGQG 83
G P G
Sbjct: 1203 GNPGPPGPPG 1212
Score = 26.6 bits (57), Expect = 6.3
Identities = 29/114 (25%), Positives = 37/114 (32%), Gaps = 7/114 (6%)
Query: 18 VLGGQGLSGPCTRSGRLVPLAPGSEGLSTWASSCRGGTGSPSTAGLPALTTLELSPGLSH 77
++G +G GP +G P + A RG G P T G P PG
Sbjct: 115 IVGPKGPPGPQGPAGEQGPRGDRGDKGEKGAPGPRGRDGEPGTPGNPGPPGPPGPPG--- 171
Query: 78 LPAGQGSGLAACHA---QASLRWAPCEARASRMGASHCSTAPGPVHCPRAEEYR 128
P G G AA A A MG PGP P + ++
Sbjct: 172 -PPGLGGNFAAQMAGGFDEKAGGAQLGVMQGPMGPMGPRGPPGPAGAPGPQGFQ 224
>gi|111118974 collagen, type II, alpha 1 isoform 2 precursor [Homo
sapiens]
Length = 1418
Score = 32.3 bits (72), Expect = 0.11
Identities = 23/72 (31%), Positives = 27/72 (37%), Gaps = 8/72 (11%)
Query: 14 GPAPVLGGQGLSGPCTRSGRLVPL-APGSEGLSTWASSCRGGTGSPSTAGLPALTTLELS 72
GP GG G G G P A G EG +G G P T G P +
Sbjct: 288 GPVGPAGGPGFPGAPGAKGEAGPTGARGPEG-------AQGPRGEPGTPGSPGPAGASGN 340
Query: 73 PGLSHLPAGQGS 84
PG +P +GS
Sbjct: 341 PGTDGIPGAKGS 352
Score = 32.3 bits (72), Expect = 0.11
Identities = 22/70 (31%), Positives = 30/70 (42%), Gaps = 12/70 (17%)
Query: 14 GPAPVLGGQGLSGPCTRSGRLVPLAPGSEGLSTWASSCRGGTGSPSTAGLPALTTLELSP 73
GP G +G GP R P PGS G + G +G+P T G+P +P
Sbjct: 309 GPTGARGPEGAQGP-----RGEPGTPGSPGPA-------GASGNPGTDGIPGAKGSAGAP 356
Query: 74 GLSHLPAGQG 83
G++ P G
Sbjct: 357 GIAGAPGFPG 366
Score = 31.2 bits (69), Expect = 0.25
Identities = 24/78 (30%), Positives = 31/78 (39%), Gaps = 6/78 (7%)
Query: 12 ARGPAPVLGGQGLSGPCTRSGRLVPLAP----GSEGLS--TWASSCRGGTGSPSTAGLPA 65
A+G A G +G SG +G P+ P G G + A+ RG G P AG P
Sbjct: 229 AKGEAGAPGVKGESGSPGENGSPGPMGPRGLPGERGRTGPAGAAGARGNDGQPGPAGPPG 288
Query: 66 LTTLELSPGLSHLPAGQG 83
PG P +G
Sbjct: 289 PVGPAGGPGFPGAPGAKG 306
Score = 31.2 bits (69), Expect = 0.25
Identities = 23/73 (31%), Positives = 30/73 (41%), Gaps = 15/73 (20%)
Query: 12 ARGPAPVLGGQGLSGPCTRSGRLVPLAPGSEGLSTWASSCRGGTGSPSTAGLPALTTLEL 71
A+GP G G GP SG PG++G+ +G G+P AG P
Sbjct: 319 AQGPRGEPGTPGSPGPAGASGN-----PGTDGIP----GAKGSAGAPGIAGAPGF----- 364
Query: 72 SPGLSHLPAGQGS 84
PG P QG+
Sbjct: 365 -PGPRGPPGPQGA 376
Score = 30.8 bits (68), Expect = 0.33
Identities = 24/73 (32%), Positives = 27/73 (36%), Gaps = 3/73 (4%)
Query: 14 GPAPVLGGQGLSG-PCTRSGRLVPLAPGSEGL--STWASSCRGGTGSPSTAGLPALTTLE 70
GP + G +G+ G P R R P PG G A G G P G P LT
Sbjct: 903 GPQGLAGQRGIVGLPGQRGERGFPGLPGPSGEPGKQGAPGASGDRGPPGPVGPPGLTGPA 962
Query: 71 LSPGLSHLPAGQG 83
PG P G
Sbjct: 963 GEPGREGSPGADG 975
Score = 30.8 bits (68), Expect = 0.33
Identities = 24/71 (33%), Positives = 31/71 (43%), Gaps = 8/71 (11%)
Query: 13 RGPAPVLGGQGLSGPCTRSGRLVPLAPGSEGL--STWASSCRGGTGSPSTAGLPALTTLE 70
RGP +G GL+GP GR +PG++G A+ +G G G P
Sbjct: 947 RGPPGPVGPPGLTGPAGEPGR--EGSPGADGPPGRDGAAGVKGDRGETGAVGAPGAPGPP 1004
Query: 71 LSPGLSHLPAG 81
SPG PAG
Sbjct: 1005 GSPG----PAG 1011
Score = 28.9 bits (63), Expect = 1.3
Identities = 23/73 (31%), Positives = 27/73 (36%), Gaps = 7/73 (9%)
Query: 13 RGPAPVLGGQGLSGPCTRSGRLVPLAPGSEGLS--TWASSCRGGTGSPSTAGLPALTTLE 70
+G A G G GP SG APG +G + T RG G P G P
Sbjct: 782 QGEAGQKGDAGAPGPQGPSG-----APGPQGPTGVTGPKGARGAQGPPGATGFPGAAGRV 836
Query: 71 LSPGLSHLPAGQG 83
PG + P G
Sbjct: 837 GPPGSNGNPGPPG 849
Score = 28.5 bits (62), Expect = 1.6
Identities = 24/66 (36%), Positives = 25/66 (37%), Gaps = 7/66 (10%)
Query: 2 EGEA-CAGTWVARGPAPVLGGQGLSGPCTRSGRLVPLAPGSEGLSTWASSCRGGTGSPST 60
+GE AG GPA G QG GP G P P EG G G P
Sbjct: 566 DGETGAAGPPGPAGPAGERGEQGAPGPSGFQGLPGPPGPPGEG------GKPGDQGVPGE 619
Query: 61 AGLPAL 66
AG P L
Sbjct: 620 AGAPGL 625
Score = 28.1 bits (61), Expect = 2.2
Identities = 20/71 (28%), Positives = 25/71 (35%)
Query: 4 EACAGTWVARGPAPVLGGQGLSGPCTRSGRLVPLAPGSEGLSTWASSCRGGTGSPSTAGL 63
E G RG +G G +G G + P P + A RG TG P AG
Sbjct: 707 EGAPGKDGGRGLTGPIGPPGPAGANGEKGEVGPPGPAGSAGARGAPGERGETGPPGPAGF 766
Query: 64 PALTTLELSPG 74
+ PG
Sbjct: 767 AGPPGADGQPG 777
Score = 28.1 bits (61), Expect = 2.2
Identities = 22/75 (29%), Positives = 26/75 (34%), Gaps = 3/75 (4%)
Query: 12 ARGPAPVLGGQGLSG---PCTRSGRLVPLAPGSEGLSTWASSCRGGTGSPSTAGLPALTT 68
A+GP G G +G P +G P P RG +G P AG P L
Sbjct: 820 AQGPPGATGFPGAAGRVGPPGSNGNPGPPGPPGPSGKDGPKGARGDSGPPGRAGEPGLQG 879
Query: 69 LELSPGLSHLPAGQG 83
PG P G
Sbjct: 880 PAGPPGEKGEPGDDG 894
Score = 27.7 bits (60), Expect = 2.8
Identities = 22/70 (31%), Positives = 23/70 (32%)
Query: 14 GPAPVLGGQGLSGPCTRSGRLVPLAPGSEGLSTWASSCRGGTGSPSTAGLPALTTLELSP 73
GP G QG SGP SG P P A+ G G P G T P
Sbjct: 1074 GPPGPSGDQGASGPAGPSGPRGPPGPVGPSGKDGANGIPGPIGPPGPRGRSGETGPAGPP 1133
Query: 74 GLSHLPAGQG 83
G P G
Sbjct: 1134 GNPGPPGPPG 1143
Score = 26.6 bits (57), Expect = 6.3
Identities = 29/114 (25%), Positives = 37/114 (32%), Gaps = 7/114 (6%)
Query: 18 VLGGQGLSGPCTRSGRLVPLAPGSEGLSTWASSCRGGTGSPSTAGLPALTTLELSPGLSH 77
++G +G GP +G P + A RG G P T G P PG
Sbjct: 46 IVGPKGPPGPQGPAGEQGPRGDRGDKGEKGAPGPRGRDGEPGTPGNPGPPGPPGPPG--- 102
Query: 78 LPAGQGSGLAACHA---QASLRWAPCEARASRMGASHCSTAPGPVHCPRAEEYR 128
P G G AA A A MG PGP P + ++
Sbjct: 103 -PPGLGGNFAAQMAGGFDEKAGGAQLGVMQGPMGPMGPRGPPGPAGAPGPQGFQ 155
>gi|89276751 alpha 1 type V collagen preproprotein [Homo sapiens]
Length = 1838
Score = 32.3 bits (72), Expect = 0.11
Identities = 26/74 (35%), Positives = 31/74 (41%), Gaps = 8/74 (10%)
Query: 14 GPAPVLGGQGLSGPCTRSGRL----VPLAPGSEGLSTWASSCRGGTGSPSTAGLPALTTL 69
GP V+G QG +G G P PG +GL A G G P AGLP
Sbjct: 994 GPPGVVGPQGPTGETGPMGERGHPGPPGPPGEQGLPGLAGK-EGTKGDPGPAGLPG---K 1049
Query: 70 ELSPGLSHLPAGQG 83
+ PGL P +G
Sbjct: 1050 DGPPGLRGFPGDRG 1063
Score = 27.3 bits (59), Expect = 3.7
Identities = 25/79 (31%), Positives = 28/79 (35%), Gaps = 8/79 (10%)
Query: 14 GPAPVLGGQGLSGPCTRSGRL-------VPLAPGSEGLSTWASSCRGGTGSPSTAGLPAL 66
GP +G QGL GP G P PG G S A G G P G P
Sbjct: 1222 GPPGPVGLQGLPGPPGEKGETGDVGQMGPPGPPGPRGPSG-APGADGPQGPPGGIGNPGA 1280
Query: 67 TTLELSPGLSHLPAGQGSG 85
+ PG + P G G
Sbjct: 1281 VGEKGEPGEAGEPGLPGEG 1299
>gi|32964830 collagen, type VIII, alpha 2 [Homo sapiens]
Length = 703
Score = 32.3 bits (72), Expect = 0.11
Identities = 28/89 (31%), Positives = 35/89 (39%), Gaps = 13/89 (14%)
Query: 13 RGPAPVLGGQGLSGPCTRSGRLVPLAPGSEGLSTWASSCRGG-------TGSPSTAGLPA 65
RGP+ + G QG +GP G +P G GL R G TG P G P
Sbjct: 459 RGPSGIPGLQGPAGPIGPQG--LPGLKGEPGLPGPPGEGRAGEPGTAGPTGPPGVPGSPG 516
Query: 66 LTTLELSPGLSHLPAGQG----SGLAACH 90
+T PG P G +G+A H
Sbjct: 517 ITGPPGPPGPPGPPGAPGAFDETGIAGLH 545
Score = 28.1 bits (61), Expect = 2.2
Identities = 26/82 (31%), Positives = 32/82 (39%), Gaps = 20/82 (24%)
Query: 2 EGEACAGTWVARGPAPVLGGQGLSGPCTRSGRLVPLAPGSEGLSTWASSCRGGTGSPSTA 61
+GEA G GP V G +G GP +G+ P PG GL P
Sbjct: 378 KGEAGPG-----GPPGVPGIRGDQGPSGLAGK--PGVPGERGL-------------PGAH 417
Query: 62 GLPALTTLELSPGLSHLPAGQG 83
G P T + PG + P G G
Sbjct: 418 GPPGPTGPKGEPGFTGRPGGPG 439
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.315 0.132 0.444
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 7,253,847
Number of Sequences: 37866
Number of extensions: 414257
Number of successful extensions: 2477
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 58
Number of HSP's successfully gapped in prelim test: 198
Number of HSP's that attempted gapping in prelim test: 1831
Number of HSP's gapped (non-prelim): 800
length of query: 133
length of database: 18,247,518
effective HSP length: 91
effective length of query: 42
effective length of database: 14,801,712
effective search space: 621671904
effective search space used: 621671904
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 56 (26.2 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.