Guide to the Human Genome
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Name: LOC100287514 Sequence: fasta or formatted (536aa) NCBI GI: 239746530
Description:

PREDICTED: hypothetical protein XP_002343754

Not currently referenced in the text

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine            12.7         68           2
 C cysteine            3.5         19           2
 D aspartate           1.7          9           1
 E glutamate           3.7         20           2
 F phenylalanine       3.0         16           2
 G glycine            10.3         55           2
 H histidine           2.4         13           1
 I isoleucine          1.7          9           1
 K lysine              2.8         15           1
 L leucine             7.8         42           2
 M methionine          1.7          9           2
 N asparagine          0.9          5           1
 P proline            11.6         62           3
 Q glutamine           4.3         23           1
 R arginine           12.1         65           3
 S serine              7.6         41           2
 T threonine           4.1         22           2
 V valine              6.0         32           2
 W tryptophan          1.5          8           1
 Y tyrosine            0.6          3           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   PREDICTED: hypothetical protein XP_002343754 
MLL4                  0.023   myeloid/lymphoid or mixed-lineage leukemia 4 
LOC100291624          0.023   PREDICTED: hypothetical protein XP_002345876 
LOC100289712          0.023   PREDICTED: hypothetical protein XP_002346761 
LOC100287455          0.023   PREDICTED: hypothetical protein XP_002342583 
C2orf55               0.023   hypothetical protein LOC343990 
LOC645602             0.022   PREDICTED: hypothetical protein 
LOC645602             0.022   PREDICTED: hypothetical protein 
LOC645602             0.022   PREDICTED: hypothetical protein 
LOC100292378          0.018   PREDICTED: hypothetical protein 
LOC100291634          0.018   PREDICTED: hypothetical protein XP_002346062 
LOC100287232          0.018   PREDICTED: hypothetical protein XP_002342816 
LOC100287232          0.018   PREDICTED: hypothetical protein 
LOC100291781          0.017   PREDICTED: hypothetical protein XP_002344871 
LOC100290673          0.017   PREDICTED: hypothetical protein XP_002347567 
FLJ22184              0.017   PREDICTED: hypothetical protein LOC80164 
LOC100286890          0.017   PREDICTED: hypothetical protein XP_002343388 
LOC100289737          0.016   PREDICTED: hypothetical protein XP_002347183 
LOC100288678          0.016   PREDICTED: hypothetical protein XP_002343039 
FLJ37078              0.016   hypothetical protein LOC222183 
COL13A1               0.016   alpha 1 type XIII collagen isoform 2 
LOC729989             0.016   PREDICTED: hypothetical protein 
LOC729989             0.016   PREDICTED: hypothetical protein 
LOC729989             0.016   PREDICTED: hypothetical protein 
COL4A5                0.015   type IV collagen alpha 5 isoform 2 precursor 
COL4A5                0.015   type IV collagen alpha 5 isoform 1 precursor 
COL4A5                0.015   type IV collagen alpha 5 isoform 3 precursor 
LOC100291828          0.015   PREDICTED: hypothetical protein XP_002344932 
LOC100288926          0.015   PREDICTED: hypothetical protein XP_002343509 
ZBED3                 0.015   zinc finger, BED-type containing 3 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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