Guide to the Human Genome
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Name: LOC100294413 Sequence: fasta or formatted (178aa) NCBI GI: 239749709
Description:

PREDICTED: hypothetical protein

Not currently referenced in the text

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine            20.2         36           4
 C cysteine            1.1          2           1
 D aspartate           0.6          1           1
 E glutamate           6.2         11           2
 F phenylalanine       0.0          0           0
 G glycine            21.3         38           3
 H histidine           2.2          4           1
 I isoleucine          0.6          1           1
 K lysine              1.7          3           1
 L leucine             3.4          6           1
 M methionine          1.1          2           1
 N asparagine          0.6          1           1
 P proline             6.7         12           2
 Q glutamine           3.9          7           1
 R arginine           16.9         30           3
 S serine              5.6         10           2
 T threonine           2.2          4           1
 V valine              5.1          9           1
 W tryptophan          0.6          1           1
 Y tyrosine            0.0          0           0
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   PREDICTED: hypothetical protein 
LOC338758             0.081   PREDICTED: hypothetical protein 
LOC338758             0.081   PREDICTED: hypothetical protein 
LOC338758             0.081   PREDICTED: hypothetical protein 
LOC100130128          0.069   PREDICTED: hypothetical protein 
LOC100130128          0.066   PREDICTED: hypothetical protein 
LOC100130128          0.066   PREDICTED: hypothetical protein 
LOC100292370          0.066   PREDICTED: hypothetical protein 
LOC100291596          0.066   PREDICTED: hypothetical protein XP_002344746 
LOC100288068          0.066   PREDICTED: hypothetical protein 
LOC100288068          0.066   PREDICTED: hypothetical protein XP_002343259 
LOC100287063          0.057   PREDICTED: hypothetical protein 
COL3A1                0.054   collagen type III alpha 1 preproprotein 
LOC100289993          0.054   PREDICTED: hypothetical protein XP_002348146 
LOC100288915          0.054   PREDICTED: hypothetical protein XP_002343820 
LOC100290265          0.054   PREDICTED: hypothetical protein XP_002346787 
LOC100292877          0.051   PREDICTED: hypothetical protein 
LOC100290783          0.051   PREDICTED: hypothetical protein XP_002347614 
LOC100290946          0.051   PREDICTED: hypothetical protein XP_002347121 
LOC100291270          0.051   PREDICTED: hypothetical protein XP_002346869 
LOC100288864          0.051   PREDICTED: hypothetical protein XP_002343435 
LOC100288840          0.051   PREDICTED: hypothetical protein XP_002344246 
LOC100287955          0.051   PREDICTED: hypothetical protein XP_002342711 
LOC100287063          0.048   PREDICTED: hypothetical protein XP_002342368 
COL1A1                0.048   alpha 1 type I collagen preproprotein 
LOC100291835          0.048   PREDICTED: hypothetical protein XP_002346266 
LOC100293316          0.048   PREDICTED: hypothetical protein 
LOC100287115          0.048   PREDICTED: hypothetical protein 
LOC100287115          0.048   PREDICTED: hypothetical protein XP_002343389 
IRS4                  0.045   insulin receptor substrate 4 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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