Guide to the Human Genome
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Name: LOC100292273 Sequence: fasta or formatted (133aa) NCBI GI: 239757727
Description:

PREDICTED: similar to hCG2013141

Not currently referenced in the text

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine            14.3         19           2
 C cysteine            6.0          8           1
 D aspartate           0.8          1           1
 E glutamate           5.3          7           2
 F phenylalanine       0.0          0           0
 G glycine            15.0         20           2
 H histidine           3.0          4           1
 I isoleucine          0.0          0           0
 K lysine              0.0          0           0
 L leucine             9.8         13           1
 M methionine          1.5          2           1
 N asparagine          0.0          0           0
 P proline            10.5         14           1
 Q glutamine           2.3          3           1
 R arginine            6.8          9           1
 S serine             11.3         15           2
 T threonine           6.0          8           2
 V valine              3.8          5           1
 W tryptophan          3.0          4           1
 Y tyrosine            0.8          1           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   PREDICTED: similar to hCG2013141 
LOC100291054          1.000   PREDICTED: hypothetical protein XP_002348134 
LOC100293205          0.069   PREDICTED: hypothetical protein 
LOC100289336          0.069   PREDICTED: hypothetical protein 
LOC100289336          0.069   PREDICTED: hypothetical protein XP_002342623 
COL4A4                0.046   alpha 4 type IV collagen precursor 
COL5A2                0.042   alpha 2 type V collagen preproprotein 
LOC100287514          0.042   PREDICTED: hypothetical protein XP_002343754 
C11orf61              0.042   hypothetical protein LOC79684 
COL8A1                0.042   alpha 1 type VIII collagen precursor 
COL8A1                0.042   alpha 1 type VIII collagen precursor 
LOC100294413          0.038   PREDICTED: hypothetical protein 
COL4A1                0.038   alpha 1 type IV collagen preproprotein 
COL7A1                0.034   alpha 1 type VII collagen precursor 
RP1L1                 0.034   retinitis pigmentosa 1-like 1 
ALPK3                 0.034   alpha-kinase 3 
COL24A1               0.034   collagen, type XXIV, alpha 1 
COL1A1                0.031   alpha 1 type I collagen preproprotein 
ARMCX2                0.031   ALEX2 protein 
ARMCX2                0.031   ALEX2 protein 
COL9A1                0.031   alpha 1 type IX collagen isoform 1 precursor 
COL10A1               0.031   type X collagen alpha 1 precursor 
COL27A1               0.031   collagen, type XXVII, alpha 1 
COL9A1                0.031   alpha 1 type IX collagen isoform 2 precursor 
COL1A2                0.031   alpha 2 type I collagen 
SPNS2                 0.027   spinster homolog 2 
COL2A1                0.027   collagen, type II, alpha 1 isoform 1 precursor [Hom...
COL2A1                0.027   collagen, type II, alpha 1 isoform 2 precursor [Hom...
COL5A1                0.027   alpha 1 type V collagen preproprotein 
COL8A2                0.027   collagen, type VIII, alpha 2 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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