Guide to the Human Genome
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Name: SPNS2 Sequence: fasta or formatted (549aa) NCBI GI: 185136021
Description:

spinster homolog 2

Referenced in:

BCL2 Pathways, Caspases, and Programmed Cell Death

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine            12.4         68           4
 C cysteine            2.7         15           2
 D aspartate           3.3         18           1
 E glutamate           2.2         12           4
 F phenylalanine       5.5         30           2
 G glycine            11.3         62           2
 H histidine           0.9          5           1
 I isoleucine          5.8         32           2
 K lysine              2.7         15           1
 L leucine            10.6         58           2
 M methionine          2.2         12           2
 N asparagine          1.5          8           1
 P proline             4.4         24           2
 Q glutamine           3.6         20           2
 R arginine            6.0         33           6
 S serine              7.8         43           3
 T threonine           6.0         33           1
 V valine              7.1         39           3
 W tryptophan          1.6          9           1
 Y tyrosine            2.4         13           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   spinster homolog 2 
SPNS1                 0.443   spinster homolog 1 isoform 1 
SPNS1                 0.443   spinster homolog 1 isoform 1 
SPNS1                 0.419   spinster homolog 1 isoform 2 
SPNS1                 0.371   spinster homolog 1 isoform 3 
SPNS3                 0.370   spinster homolog 3 
SPNS1                 0.338   spinster homolog 1 isoform 4 
SVOPL                 0.022   SVOP-like isoform 1 
SLC17A9               0.020   vesicular nucleotide transporter SLC17A9 
PHOX2B                0.019   paired-like homeobox 2b 
SLCO5A1               0.017   solute carrier organic anion transporter family, me...
SLCO5A1               0.017   solute carrier organic anion transporter family, me...
SLCO5A1               0.017   solute carrier organic anion transporter family, me...
SLC2A8                0.017   solute carrier family 2 (facilitated glucose transpo...
SVOP                  0.017   SV2 related protein 
NKX1-1                0.016   PREDICTED: NK1 homeobox 1 
NKX1-1                0.016   PREDICTED: HPX-153 homeobox 
SLC2A12               0.015   solute carrier family 2 (facilitated glucose transpo...
SLC37A3               0.014   solute carrier family 37 (glycerol-3-phosphate trans...
SLC37A3               0.014   solute carrier family 37 (glycerol-3-phosphate trans...
SLC22A8               0.014   solute carrier family 22 member 8 
SV2A                  0.014   synaptic vesicle glycoprotein 2 
RING1                 0.013   ring finger protein 1 
COL3A1                0.013   collagen type III alpha 1 preproprotein 
LOC100131774          0.013   PREDICTED: hypothetical protein 
LOC100131774          0.013   PREDICTED: hypothetical protein 
NKX1-2                0.012   NK1 homeobox 2 
NKX1-2                0.012   PREDICTED: NK1 homeobox 2 
LOC100293055          0.012   PREDICTED: similar to COL22A1 protein 
NKX1-2                0.012   PREDICTED: NK1 homeobox 2 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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