Guide to the Human Genome
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Name: LOC100293205 Sequence: fasta or formatted (91aa) NCBI GI: 239754166
Description:

PREDICTED: hypothetical protein

Not currently referenced in the text

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine            16.5         15           2
 C cysteine            5.5          5           1
 D aspartate           3.3          3           1
 E glutamate           4.4          4           2
 F phenylalanine       0.0          0           0
 G glycine             8.8          8           2
 H histidine           2.2          2           2
 I isoleucine          2.2          2           1
 K lysine              1.1          1           1
 L leucine             4.4          4           1
 M methionine          2.2          2           1
 N asparagine          0.0          0           0
 P proline            14.3         13           1
 Q glutamine           2.2          2           1
 R arginine           14.3         13           2
 S serine             12.1         11           2
 T threonine           5.5          5           2
 V valine              1.1          1           1
 W tryptophan          0.0          0           0
 Y tyrosine            0.0          0           0
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   PREDICTED: hypothetical protein 
LOC100289336          1.000   PREDICTED: hypothetical protein 
LOC100289336          1.000   PREDICTED: hypothetical protein XP_002342623 
LOC100292273          0.108   PREDICTED: similar to hCG2013141 
LOC100291054          0.108   PREDICTED: hypothetical protein XP_002348134 
ZNF469                0.078   zinc finger protein 469 
ZBTB4                 0.072   zinc finger and BTB domain containing 4 
ZBTB4                 0.072   zinc finger and BTB domain containing 4 
TNRC18                0.066   trinucleotide repeat containing 18 
TMPRSS13              0.066   transmembrane protease, serine 13 
LOC100131251          0.060   PREDICTED: hypothetical protein 
LOC100131251          0.060   PREDICTED: hypothetical protein 
PREX1                 0.060   phosphatidylinositol-3,4,5-trisphosphate-dependent R...
SCARF2                0.054   scavenger receptor class F, member 2 isoform 1 [Homo...
SCARF2                0.054   scavenger receptor class F, member 2 isoform 2 [Homo...
FAM48B1               0.048   hypothetical protein LOC100130302 
TREX1                 0.048   three prime repair exonuclease 1 isoform a 
IRX3                  0.048   iroquois homeobox 3 
LOC100287063          0.042   PREDICTED: hypothetical protein 
LOC100287063          0.042   PREDICTED: hypothetical protein XP_002342368 
DLAT                  0.042   dihydrolipoamide S-acetyltransferase 
ZFAND2B               0.042   zinc finger, AN1-type domain 2B 
WASF1                 0.042   Wiskott-Aldrich syndrome protein family member 1 [Ho...
WASF1                 0.042   Wiskott-Aldrich syndrome protein family member 1 [Ho...
WASF1                 0.042   Wiskott-Aldrich syndrome protein family member 1 [Ho...
WASF1                 0.042   Wiskott-Aldrich syndrome protein family member 1 [Hom...
FOXO1                 0.042   forkhead box O1 
ZNF837                0.042   zinc finger protein 837 isoform 1 
ZNF837                0.042   zinc finger protein 837 isoform 2 
LCE5A                 0.042   late cornified envelope 5A 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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