LOC727962 23303

Name: LOC727962	Sequence: fasta or formatted (2378aa)		NCBI GI: 239757639
Description: PREDICTED: similar to collagen, type I, alpha 2		Not currently referenced in the text
Other entries for this name: alt prot {445aa} PREDICTED: hypothetical protein
Composition: Amino acid Percentage Count Longest homopolymer A alanine 26.0 618 2 C cysteine 0.0 0 0 D aspartate 8.7 207 1 E glutamate 10.3 245 2 F phenylalanine 0.0 0 0 G glycine 9.5 227 1 H histidine 4.9 116 1 I isoleucine 6.9 163 1 K lysine 2.4 56 1 L leucine 0.8 18 2 M methionine 0.3 7 1 N asparagine 7.4 176 1 P proline 1.3 31 1 Q glutamine 6.2 148 1 R arginine 0.8 20 1 S serine 1.0 23 2 T threonine 2.1 51 2 V valine 11.1 263 2 W tryptophan 0.0 0 0 Y tyrosine 0.4 9 1			Comparative genomics: Search single species RefSeq proteins at NCBI H. sapiens M. musculus D. rerio C. intestinalis S. purpuratus D. melanogaster C. elegans A. thaliana S. cerevisiae E. coli W3110 A. pernix K1 Search summary Figure data Additional searches of RefSeq proteins at NCBI All Eukaryotes Bacteria Archaea Viruses Primates Mammals Vertebrates
Related human proteins: Protein Relative score Description Self-match 1.000 PREDICTED: similar to collagen, type I, alpha 2 [Ho... LOC653203 0.470 PREDICTED: hypothetical protein LOC100133794 0.147 PREDICTED: hypothetical protein, partial LOC729444 0.075 PREDICTED: hypothetical protein LOC729461 0.074 PREDICTED: hypothetical protein LOC727962 0.074 PREDICTED: hypothetical protein COL2A1 0.022 collagen, type II, alpha 1 isoform 1 precursor [Hom... COL2A1 0.022 collagen, type II, alpha 1 isoform 2 precursor [Hom... COL1A1 0.020 alpha 1 type I collagen preproprotein COL1A2 0.017 alpha 2 type I collagen COL11A2 0.017 collagen, type XI, alpha 2 isoform 2 preproprotein ... COL11A1 0.017 alpha 1 type XI collagen isoform B preproprotein [Ho... COL11A1 0.017 alpha 1 type XI collagen isoform C preproprotein [Ho... COL11A1 0.017 alpha 1 type XI collagen isoform A preproprotein [Ho... COL11A2 0.016 collagen, type XI, alpha 2 isoform 3 preproprotein ... COL11A2 0.016 collagen, type XI, alpha 2 isoform 1 preproprotein ... COL7A1 0.015 alpha 1 type VII collagen precursor COL24A1 0.014 collagen, type XXIV, alpha 1 COL5A1 0.014 alpha 1 type V collagen preproprotein COL5A2 0.013 alpha 2 type V collagen preproprotein COL5A3 0.013 collagen, type V, alpha 3 preproprotein COL3A1 0.012 collagen type III alpha 1 preproprotein COL27A1 0.011 collagen, type XXVII, alpha 1 COL4A1 0.010 alpha 1 type IV collagen preproprotein COL22A1 0.009 collagen, type XXII, alpha 1 MARCO 0.007 macrophage receptor with collagenous structure COL9A2 0.007 alpha 2 type IX collagen LOC100293055 0.007 PREDICTED: similar to COL22A1 protein COL21A1 0.007 collagen, type XXI, alpha 1 precursor COL4A6 0.006 type IV alpha 6 collagen isoform A precursor Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.