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Search of human proteins with 239757626
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|239757626 PREDICTED: hypothetical protein XP_002345507 [Homo
sapiens]
(609 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|239757626 PREDICTED: hypothetical protein XP_002345507 [Homo ... 1284 0.0
gi|239746640 PREDICTED: hypothetical protein XP_002344234 [Homo ... 306 5e-83
gi|111118976 collagen, type II, alpha 1 isoform 1 precursor [Hom... 67 4e-11
gi|111118974 collagen, type II, alpha 1 isoform 2 precursor [Hom... 67 4e-11
gi|4502951 collagen type III alpha 1 preproprotein [Homo sapiens] 67 6e-11
gi|18105032 type X collagen alpha 1 precursor [Homo sapiens] 66 8e-11
gi|89142737 alpha 3 type IV collagen isoform 5 precursor [Homo s... 65 2e-10
gi|89142735 alpha 3 type IV collagen isoform 4 precursor [Homo s... 65 2e-10
gi|89142733 alpha 3 type IV collagen isoform 2 precursor [Homo s... 65 2e-10
gi|89142730 alpha 3 type IV collagen isoform 1 precursor [Homo s... 65 2e-10
gi|4502961 alpha 1 type VII collagen precursor [Homo sapiens] 64 5e-10
gi|110349772 alpha 1 type I collagen preproprotein [Homo sapiens] 61 3e-09
gi|40805823 collagen, type XXII, alpha 1 [Homo sapiens] 60 8e-09
gi|188536004 zinc finger protein 469 [Homo sapiens] 59 2e-08
gi|206597445 alpha 1 type XVIII collagen isoform 3 precursor [Ho... 58 3e-08
gi|110611233 alpha 1 type XVIII collagen isoform 2 precursor [Ho... 58 3e-08
gi|110611235 alpha 1 type XVIII collagen isoform 1 precursor [Ho... 58 3e-08
gi|239754955 PREDICTED: similar to COL22A1 protein [Homo sapiens] 57 4e-08
gi|47778921 alpha 1 type XIX collagen precursor [Homo sapiens] 57 4e-08
gi|149158690 HLA-B associated transcript-2 [Homo sapiens] 56 8e-08
gi|163965366 nascent polypeptide-associated complex alpha subuni... 56 1e-07
gi|89363017 alpha 2 type V collagen preproprotein [Homo sapiens] 54 3e-07
gi|32964830 collagen, type VIII, alpha 2 [Homo sapiens] 54 4e-07
gi|148536825 alpha 1 type IV collagen preproprotein [Homo sapiens] 53 7e-07
gi|98985810 alpha 1 type XI collagen isoform B preproprotein [Ho... 52 2e-06
gi|98985808 alpha 1 type XI collagen isoform C preproprotein [Ho... 52 2e-06
gi|98985806 alpha 1 type XI collagen isoform A preproprotein [Ho... 52 2e-06
gi|209571537 proline-rich protein BstNI subfamily 2 [Homo sapiens] 52 2e-06
gi|120587025 SH3 and multiple ankyrin repeat domains 1 [Homo sap... 52 2e-06
gi|4502955 type IV collagen alpha 5 isoform 1 precursor [Homo sa... 52 2e-06
>gi|239757626 PREDICTED: hypothetical protein XP_002345507 [Homo
sapiens]
Length = 609
Score = 1284 bits (3322), Expect = 0.0
Identities = 609/609 (100%), Positives = 609/609 (100%)
Query: 1 MAGPDTGTQWWCHTQTTGGTHGFDSHNAQTRLQSSRDVGRGLLALLHWNRETKVAGHSGG 60
MAGPDTGTQWWCHTQTTGGTHGFDSHNAQTRLQSSRDVGRGLLALLHWNRETKVAGHSGG
Sbjct: 1 MAGPDTGTQWWCHTQTTGGTHGFDSHNAQTRLQSSRDVGRGLLALLHWNRETKVAGHSGG 60
Query: 61 AWGGPLAASLGLVRLPHFVEQLHHFIIDDKHYGHIQADPAQAGDSALVESGPSFFRICKP 120
AWGGPLAASLGLVRLPHFVEQLHHFIIDDKHYGHIQADPAQAGDSALVESGPSFFRICKP
Sbjct: 61 AWGGPLAASLGLVRLPHFVEQLHHFIIDDKHYGHIQADPAQAGDSALVESGPSFFRICKP 120
Query: 121 QSHVFRYLCASRPYGGHQQGGHDEEADGLVRALLQDSGCEALLAGPGPIQGGGNWELFPR 180
QSHVFRYLCASRPYGGHQQGGHDEEADGLVRALLQDSGCEALLAGPGPIQGGGNWELFPR
Sbjct: 121 QSHVFRYLCASRPYGGHQQGGHDEEADGLVRALLQDSGCEALLAGPGPIQGGGNWELFPR 180
Query: 181 KQCSQGRPGLPTRTMPRDTGQPTRTMLWDTGQPCVLPQGPAVTPPAFPGVQETLPSLPVA 240
KQCSQGRPGLPTRTMPRDTGQPTRTMLWDTGQPCVLPQGPAVTPPAFPGVQETLPSLPVA
Sbjct: 181 KQCSQGRPGLPTRTMPRDTGQPTRTMLWDTGQPCVLPQGPAVTPPAFPGVQETLPSLPVA 240
Query: 241 PGAPGQRGRPSPYSLRVRGPRQDLPHLDGLHGAHDHHGLGHASAQAAQQPTRAVQPSLGI 300
PGAPGQRGRPSPYSLRVRGPRQDLPHLDGLHGAHDHHGLGHASAQAAQQPTRAVQPSLGI
Sbjct: 241 PGAPGQRGRPSPYSLRVRGPRQDLPHLDGLHGAHDHHGLGHASAQAAQQPTRAVQPSLGI 300
Query: 301 PHVVAEELEHSKPGGGRRSRELRPRYRPRTPWLRTVCRTQSPGGGGGQDPTALGAAALGT 360
PHVVAEELEHSKPGGGRRSRELRPRYRPRTPWLRTVCRTQSPGGGGGQDPTALGAAALGT
Sbjct: 301 PHVVAEELEHSKPGGGRRSRELRPRYRPRTPWLRTVCRTQSPGGGGGQDPTALGAAALGT 360
Query: 361 RPPRRRGLPLLTDAPVPRRVRALVQLQLRLHVLGGEGDADLDATRQAACRDREPAPETPA 420
RPPRRRGLPLLTDAPVPRRVRALVQLQLRLHVLGGEGDADLDATRQAACRDREPAPETPA
Sbjct: 361 RPPRRRGLPLLTDAPVPRRVRALVQLQLRLHVLGGEGDADLDATRQAACRDREPAPETPA 420
Query: 421 RPLALGPLPRPGLRSARPPRQCRGEHRLGPHAPMPSPRCPGEAQGVTDGRRASPSAPGGD 480
RPLALGPLPRPGLRSARPPRQCRGEHRLGPHAPMPSPRCPGEAQGVTDGRRASPSAPGGD
Sbjct: 421 RPLALGPLPRPGLRSARPPRQCRGEHRLGPHAPMPSPRCPGEAQGVTDGRRASPSAPGGD 480
Query: 481 QDRVSTTPQPTAQPGSGAGPQRPGPTQKRGGRGVRVPEGSPARIAFSGRRGGAKAQPMAE 540
QDRVSTTPQPTAQPGSGAGPQRPGPTQKRGGRGVRVPEGSPARIAFSGRRGGAKAQPMAE
Sbjct: 481 QDRVSTTPQPTAQPGSGAGPQRPGPTQKRGGRGVRVPEGSPARIAFSGRRGGAKAQPMAE 540
Query: 541 AESLGDRERRDGGGAAGGGAVAQLRAVGQGALCAAPRDSGPRVCATVESGGIPRDPGGQG 600
AESLGDRERRDGGGAAGGGAVAQLRAVGQGALCAAPRDSGPRVCATVESGGIPRDPGGQG
Sbjct: 541 AESLGDRERRDGGGAAGGGAVAQLRAVGQGALCAAPRDSGPRVCATVESGGIPRDPGGQG 600
Query: 601 HTLPENTWG 609
HTLPENTWG
Sbjct: 601 HTLPENTWG 609
>gi|239746640 PREDICTED: hypothetical protein XP_002344234 [Homo
sapiens]
Length = 165
Score = 306 bits (783), Expect = 5e-83
Identities = 141/146 (96%), Positives = 142/146 (97%)
Query: 1 MAGPDTGTQWWCHTQTTGGTHGFDSHNAQTRLQSSRDVGRGLLALLHWNRETKVAGHSGG 60
MAGPDTGTQWWCHTQTTGGTHGFDSHNAQTRLQSSRDVGRGLLALLHWNRETKVAGHSGG
Sbjct: 1 MAGPDTGTQWWCHTQTTGGTHGFDSHNAQTRLQSSRDVGRGLLALLHWNRETKVAGHSGG 60
Query: 61 AWGGPLAASLGLVRLPHFVEQLHHFIIDDKHYGHIQADPAQAGDSALVESGPSFFRICKP 120
AWGGPLAASLGLVRLPHFVEQLHHFIIDDKHYGHIQADPAQAGDSALVESGPSFFRICKP
Sbjct: 61 AWGGPLAASLGLVRLPHFVEQLHHFIIDDKHYGHIQADPAQAGDSALVESGPSFFRICKP 120
Query: 121 QSHVFRYLCASRPYGGHQQGGHDEEA 146
QSHVFRYLCASRPYGGHQQ G + A
Sbjct: 121 QSHVFRYLCASRPYGGHQQAGAQQLA 146
>gi|111118976 collagen, type II, alpha 1 isoform 1 precursor [Homo
sapiens]
Length = 1487
Score = 67.4 bits (163), Expect = 4e-11
Identities = 128/501 (25%), Positives = 156/501 (31%), Gaps = 107/501 (21%)
Query: 134 YGGHQQGGHDEEADGLVRALLQDS-GCEALLAGPGPIQGGGNWELFPRKQCSQGRPGLPT 192
+ GG DE+A G ++Q G PGP P Q QG PG P
Sbjct: 179 FAAQMAGGFDEKAGGAQLGVMQGPMGPMGPRGPPGPAGA-------PGPQGFQGNPGEP- 230
Query: 193 RTMPRDTGQPTRTMLWDTGQPCVL----PQGPAVTPPAFPGVQETLPSLPVAPGAPGQRG 248
G+P V P+GP PP PG PG G+RG
Sbjct: 231 ------------------GEPGVSGPMGPRGPP-GPPGKPGDDGEAGK----PGKAGERG 267
Query: 249 RPSPYSLRVRGPRQDLPHLDGLHGAHDHHGLGHASAQAAQQPTRAVQPSLGIPHVVAEEL 308
P P R P L G+ G + GL A +A G P V E
Sbjct: 268 PPGPQGAR---GFPGTPGLPGVKGHRGYPGLDGAKGEA------------GAPGVKGES- 311
Query: 309 EHSKPGGGRRSRELRPRYRPRTPWLRTVCRTQSPGGGGGQDPTALGAAALGTRPPRRRGL 368
PG + PR P RT G G + A P G
Sbjct: 312 --GSPGENGSPGPMGPRGLPGERG-----RTGPAGAAGARGNDGQPGPAGPPGPVGPAGG 364
Query: 369 PLLTDAPVPRRVRALVQLQLRLHVLGGEGDADLDATR-QAACRDREPAPETPARPLALGP 427
P AP G +G+A R + P TP P G
Sbjct: 365 PGFPGAP------------------GAKGEAGPTGARGPEGAQGPRGEPGTPGSPGPAGA 406
Query: 428 LPRPGLRSARPPRQCRGEHRLGPHAPMPSPRCPGEAQGVTD-----GRRASPSAPG--GD 480
PG + G + P PR P QG T G+ P G G+
Sbjct: 407 SGNPGTDGIPGAKGSAGAPGIAGAPGFPGPRGPPGPQGATGPLGPKGQTGEPGIAGFKGE 466
Query: 481 QDRVSTTPQPTAQPGSGAGPQ-RPGPTQKRGGRGVRVPEGSPARIAFSGRRG--GAKAQP 537
Q P +PG AGPQ PGP + G RG R G I G RG G + P
Sbjct: 467 QG-------PKGEPGP-AGPQGAPGPAGEEGKRGARGEPGGVGPIGPPGERGAPGNRGFP 518
Query: 538 MAE--AESLGDRERRDGGGAAG-------GGAVAQLRAVGQGALCAAPRDSGPRVCATVE 588
+ A G R G AG G + G L P D+GP+ V
Sbjct: 519 GQDGLAGPKGAPGERGPSGLAGPKGANGDPGRPGEPGLPGARGLTGRPGDAGPQ--GKVG 576
Query: 589 SGGIPRDPGGQGHTLPENTWG 609
G P + G G P+ G
Sbjct: 577 PSGAPGEDGRPGPPGPQGARG 597
Score = 52.4 bits (124), Expect = 1e-06
Identities = 120/475 (25%), Positives = 149/475 (31%), Gaps = 76/475 (16%)
Query: 166 PGPIQGGGNWELFPRKQCSQGRPGLPTRTMPRDTGQPTRTMLWDTGQPCVLPQGPAVTP- 224
PGP+ G FP ++G G PT + Q R G P P G + P
Sbjct: 356 PGPVGPAGG-PGFPGAPGAKGEAG-PTGARGPEGAQGPRGEPGTPGSPG--PAGASGNPG 411
Query: 225 -PAFPGVQETL--PSLPVAPGAPGQRGRPSPYSLR-VRGPRQDL--PHLDGLHGAHDHHG 278
PG + + P + APG PG RG P P GP+ P + G G G
Sbjct: 412 TDGIPGAKGSAGAPGIAGAPGFPGPRGPPGPQGATGPLGPKGQTGEPGIAGFKGEQGPKG 471
Query: 279 L-GHASAQAAQQPT-----RAVQPSLGIPHVVAEELEHSKPGGGRRSRELRPRYRPRTPW 332
G A Q A P R + G + E PG R P
Sbjct: 472 EPGPAGPQGAPGPAGEEGKRGARGEPGGVGPIGPPGERGAPGN---------RGFPGQDG 522
Query: 333 LRTVCRTQSPGGGGGQDPTALGAAALGTRPPRRRGLPLLTDAPVPRRVRALVQLQLRLHV 392
L G G + P+ L P R G P L A R L
Sbjct: 523 L-----AGPKGAPGERGPSGLAGPKGANGDPGRPGEPGLPGA------RGLT-------- 563
Query: 393 LGGEGDADLDAT---RQAACRDREPAPETPARPLALGPLPRPGLRSARPPRQCRGEHRLG 449
G GDA A D P P P G +PG+ P+ GE
Sbjct: 564 -GRPGDAGPQGKVGPSGAPGEDGRPGPPGPQ-----GARGQPGVMGFPGPKGANGEPGKA 617
Query: 450 PHAPMPSPR----CPGEAQGVTDGRRASPSAPGGDQDRVSTTPQPTAQPGSGAGPQRPGP 505
+P PG+ P+ P G++ P P+ G P PG
Sbjct: 618 GEKGLPGAPGLRGLPGKDGETGAAGPPGPAGPAGERGEQGA-PGPSGFQGLPGPPGPPGE 676
Query: 506 TQKRGGRGVRVPEGSPARI------AFSGRRGGAKAQPMAEAESLGDRERRDGGGAAGGG 559
K G +GV G+P + F G RG AQ + L DG A G
Sbjct: 677 GGKPGDQGVPGEAGAPGLVGPRGERGFPGERGSPGAQGLQGPRGLPGTPGTDGPKGASGP 736
Query: 560 AVAQLRAVGQGALCAAPRDSGPRVCA--------TVESG--GIPRDPGGQGHTLP 604
A A G L P + G A E G G P GG+G T P
Sbjct: 737 A-GPPGAQGPPGLQGMPGERGAAGIAGPKGDRGDVGEKGPEGAPGKDGGRGLTGP 790
Score = 52.0 bits (123), Expect = 2e-06
Identities = 118/442 (26%), Positives = 144/442 (32%), Gaps = 88/442 (19%)
Query: 211 GQPCVL----PQGPAVTP--------PAFPGVQETLPSLPVAPGAPGQRGRPSPYSLRVR 258
GQP V+ P+G P P PG++ LP G G G P P
Sbjct: 597 GQPGVMGFPGPKGANGEPGKAGEKGLPGAPGLR----GLPGKDGETGAAGPPGPAGPAGE 652
Query: 259 GPRQDLPHLDGLHGAHDHHGLGHASAQAAQQPTRAVQPSLGIPHVVAEELEHSKPG--GG 316
Q P G G G + + + V G P +V E PG G
Sbjct: 653 RGEQGAPGPSGFQGLPGPPG---PPGEGGKPGDQGVPGEAGAPGLVGPRGERGFPGERGS 709
Query: 317 RRSRELR-PRYRPRTPWLRTVCRTQSPGGG-GGQDPTAL-------GAAAL--------- 358
++ L+ PR P TP P G G Q P L GAA +
Sbjct: 710 PGAQGLQGPRGLPGTPGTDGPKGASGPAGPPGAQGPPGLQGMPGERGAAGIAGPKGDRGD 769
Query: 359 -GTRPPRR-------RGLPLLTDAPVPRRVRALVQLQLRLHVLGGEGDADLDATRQAACR 410
G + P RGL P P +G G A R A
Sbjct: 770 VGEKGPEGAPGKDGGRGLTGPIGPPGPAGANG------EKGEVGPPGPAGSAGARGAPGE 823
Query: 411 DREPAPETPAR----PLALGPLPRPGLRSARPPRQCRGEHRL-GPHAPMPSPRCPGEAQG 465
E P PA P A G +PG + + +G+ GP P +P G G
Sbjct: 824 RGETGPPGPAGFAGPPGADG---QPGAKGEQGEAGQKGDAGAPGPQGPSGAPGPQGPT-G 879
Query: 466 VTD--GRRASPSAPG-----GDQDRVSTTPQPTAQPGSGAGPQRPGPTQKRGGRGVRVPE 518
VT G R + PG G RV P G+ P PGP+ K G +G R
Sbjct: 880 VTGPKGARGAQGPPGATGFPGAAGRVG----PPGSNGNPGPPGPPGPSGKDGPKGARGDS 935
Query: 519 GSPARIAFSGRRGGAKAQPMAEAESLGDRERRDGGGAAGGGAVAQLRAVGQGALCAAPRD 578
G P R G +G A P E GD DG A G Q A GQ + P
Sbjct: 936 GPPGRAGEPGLQG--PAGPPGEKGEPGD----DGPSGAEGPPGPQGLA-GQRGIVGLPGQ 988
Query: 579 SGPRVCATVESGGIPRDPGGQG 600
G R G P PG G
Sbjct: 989 RGER--------GFPGLPGPSG 1002
Score = 48.1 bits (113), Expect = 2e-05
Identities = 106/419 (25%), Positives = 128/419 (30%), Gaps = 71/419 (16%)
Query: 235 PSLPVAPGAPGQRGRPSPYSLRVRGPRQ------------DLPHLDGLHGAHDHHG-LGH 281
P P PG PG G P P L Q L + G G G G
Sbjct: 155 PGTPGNPGPPGPPGPPGPPGLGGNFAAQMAGGFDEKAGGAQLGVMQGPMGPMGPRGPPGP 214
Query: 282 ASAQAAQ----QPTRAVQPSL----------GIPHVVAEELEHSKPGGGRRSRELRP--- 324
A A Q P +P + G P ++ E KPG P
Sbjct: 215 AGAPGPQGFQGNPGEPGEPGVSGPMGPRGPPGPPGKPGDDGEAGKPGKAGERGPPGPQGA 274
Query: 325 RYRPRTPWLRTVCRTQSPGGGGGQDPTALGAAALGTRPPRRRGLPLLTDAPVPRRVRALV 384
R P TP L V + G G D A A G + G P +P P R L
Sbjct: 275 RGFPGTPGLPGV---KGHRGYPGLDGAKGEAGAPGVK--GESGSPGENGSPGPMGPRGLP 329
Query: 385 QLQLRLHVLGGEGDADLDATRQAACRDREPAPETPARPLALGPLP----RPGLRSARPPR 440
+ R G G A D +P P P P+ P PG + P
Sbjct: 330 GERGRTGPAGAAG---------ARGNDGQPGPAGPPGPVGPAGGPGFPGAPGAKGEAGPT 380
Query: 441 QCRG-EHRLGPHAPMPSPRCPGEAQGVTDGRRASPSAPGGDQDRVSTTPQPTAQPGSGAG 499
RG E GP +P PG A G + PG + P PG
Sbjct: 381 GARGPEGAQGPRGEPGTPGSPGPAG--ASGNPGTDGIPGAKGS--AGAPGIAGAPGFPGP 436
Query: 500 PQRPGPTQKRGGRGVRVPEGSPARIAFSGRRG----GAKAQPMAEAESLGDRERRDGGGA 555
PGP G G + G P F G +G A P G+ +R G
Sbjct: 437 RGPPGPQGATGPLGPKGQTGEPGIAGFKGEQGPKGEPGPAGPQGAPGPAGEEGKRGARGE 496
Query: 556 AGG----------GAVAQLRAVGQGALC---AAPRDSGPRVCATVE-SGGIPRDPGGQG 600
GG GA GQ L AP + GP A + + G P PG G
Sbjct: 497 PGGVGPIGPPGERGAPGNRGFPGQDGLAGPKGAPGERGPSGLAGPKGANGDPGRPGEPG 555
Score = 44.3 bits (103), Expect = 3e-04
Identities = 115/463 (24%), Positives = 138/463 (29%), Gaps = 92/463 (19%)
Query: 164 AGPGPIQGGGNWELFPRKQCSQGRPGLPTRTMPRDTGQ--PTRTMLWDTGQPCVLPQGPA 221
AGP QG + P ++ + G G + D G+ P D G+ P GP
Sbjct: 737 AGPPGAQGPPGLQGMPGERGAAGIAG--PKGDRGDVGEKGPEGAPGKDGGRGLTGPIGPP 794
Query: 222 VTPPAFPGVQETLPSLPV----APGAPGQRGRPSPYS-LRVRGPRQDLPHLDGLHGAHDH 276
A E P P A GAPG+RG P GP P DG GA
Sbjct: 795 GPAGANGEKGEVGPPGPAGSAGARGAPGERGETGPPGPAGFAGP----PGADGQPGAKGE 850
Query: 277 HG----LGHASAQAAQQPTRAVQPS--LGIPHVVAEELEHSKPGGGRRSRELRPRYRPRT 330
G G A A Q P+ A P G+ PG T
Sbjct: 851 QGEAGQKGDAGAPGPQGPSGAPGPQGPTGVTGPKGARGAQGPPGA--------------T 896
Query: 331 PWLRTVCRTQSPGGGGGQDPTALGAAALGTRPPRRRGLPLLTDAPVPRRVRALVQLQLRL 390
+ R PG G P + P RG D+ P R
Sbjct: 897 GFPGAAGRVGPPGSNGNPGPPGPPGPSGKDGPKGARG-----DSGPPGRA---------- 941
Query: 391 HVLGGEGDADLDATRQAACRDREPAPETPARPLALGPLPRPGLRSARP----PRQCRGEH 446
G+ L EP + P+ A GP GL R P Q RGE
Sbjct: 942 ------GEPGLQGPAGPPGEKGEPGDDGPSG--AEGPPGPQGLAGQRGIVGLPGQ-RGER 992
Query: 447 RLGPHAPMPSPRCPGEAQGVTDGRRASPSAPGGDQDRVSTTPQ-------PTAQPGSGAG 499
P P PS G APG DR P P +PG
Sbjct: 993 GF-PGLPGPS------------GEPGKQGAPGASGDRGPPGPVGPPGLTGPAGEPGREGS 1039
Query: 500 PQRPGPTQKRGGRGVRVPEGSPARIAFSGRRG-GAKAQPMAEAESLGDRERRDGGGAAGG 558
P GP + G GV+ G + G G P GDR G G
Sbjct: 1040 PGADGPPGRDGAAGVKGDRGETGAVGAPGAPGPPGSPGPAGPTGKQGDRGEAGAQGPMGP 1099
Query: 559 GAVAQLRAVGQGALCAAPRDSGPRVCATVESGGIPRDPGGQGH 601
A R + QG GPR G P + G +GH
Sbjct: 1100 SGPAGARGI-QG-------PQGPR--GDKGEAGEPGERGLKGH 1132
Score = 43.9 bits (102), Expect = 4e-04
Identities = 112/470 (23%), Positives = 148/470 (31%), Gaps = 110/470 (23%)
Query: 165 GPGPIQGGGNWELFPRKQCSQGRPGLPTRTMPRDTGQPTRTMLWDTGQPCVLPQGPAVTP 224
GP +G FP + G G P P P + D G+P
Sbjct: 504 GPPGERGAPGNRGFPGQDGLAGPKGAPGERGPSGLAGP-KGANGDPGRP---------GE 553
Query: 225 PAFPGVQ-------ETLPSLPVAP-GAPGQRGRPSPYSLRVRGPRQDLPHLDGLHGAHDH 276
P PG + + P V P GAPG+ GRP P GP Q G+ G
Sbjct: 554 PGLPGARGLTGRPGDAGPQGKVGPSGAPGEDGRPGP-----PGP-QGARGQPGVMGFPGP 607
Query: 277 HGLGHASAQAAQQPTRAVQPSLGIPHVVAEELEHSKPGGGRRSRELRPRYRPRTPWLRTV 336
G +A ++ G+P E PG + E + P + +
Sbjct: 608 KGANGEPGKAGEKGLPGAPGLRGLPGKDGETGAAGPPGPAGPAGERGEQGAPGPSGFQGL 667
Query: 337 CRTQSPGGGGGQDPTALGAAALGTRPPRRRGLPLLTDAPVPRRVRALVQLQLRLHVLGGE 396
P G GG+ P +G+P AP ++G
Sbjct: 668 PGPPGPPGEGGK--------------PGDQGVPGEAGAP---------------GLVGPR 698
Query: 397 GDADLDATRQAACRDREPAPETPARPLALGPLPRPGLRSARPPRQCRGEHRLGPHAPMPS 456
G+ R + P GP PG P+ G P P P
Sbjct: 699 GERGFPGERGS-----------PGAQGLQGPRGLPGTPGTDGPKGASG-----PAGP-PG 741
Query: 457 PRCPGEAQGVTDGRRASPSA-PGGDQDRVSTTPQPTAQPGSGAGPQRPGPTQKRGGRGVR 515
+ P QG+ R A+ A P GD+ V GP+ G K GGRG+
Sbjct: 742 AQGPPGLQGMPGERGAAGIAGPKGDRGDVGEK-----------GPE--GAPGKDGGRGLT 788
Query: 516 VPEGSPARIAFSGRRGGAKAQPMAEAESLGDR----ERRDGG--GAAG----------GG 559
P G P +G +G + P A S G R ER + G G AG G
Sbjct: 789 GPIGPPGPAGANGEKG--EVGPPGPAGSAGARGAPGERGETGPPGPAGFAGPPGADGQPG 846
Query: 560 AVAQLRAVGQGALCAAPRDSGPRVCATVESGGIPRDPGGQGHTLPENTWG 609
A + GQ AP GP G P G G T P+ G
Sbjct: 847 AKGEQGEAGQKGDAGAPGPQGP--------SGAPGPQGPTGVTGPKGARG 888
Score = 40.4 bits (93), Expect = 0.005
Identities = 84/318 (26%), Positives = 108/318 (33%), Gaps = 54/318 (16%)
Query: 238 PVAPGAPGQRGRPSPYSLRV-RGP--RQDLPHLDGLHGAHDHHGL----GHASAQAAQQP 290
P PG PG G+ P R GP R P L G G G G + A+ P
Sbjct: 914 PGPPGPPGPSGKDGPKGARGDSGPPGRAGEPGLQGPAGPPGEKGEPGDDGPSGAEGPPGP 973
Query: 291 TRAVQPSLGIPHVVAEELEHSKPGGGRRSRELRPRYRPRTPWLRTVCRTQSPGGGGGQDP 350
+ + GI + + E PG S E + +PG G + P
Sbjct: 974 -QGLAGQRGIVGLPGQRGERGFPGLPGPSGEPG--------------KQGAPGASGDRGP 1018
Query: 351 TA-LGAAALGTRP---PRRRGLPLLTDAPVPRRVRALVQLQLRLHVLGGEGDADLDATRQ 406
+G L T P P R G P D P R A V+ G G+
Sbjct: 1019 PGPVGPPGL-TGPAGEPGREGSPG-ADGPPGRDGAAGVK--------GDRGETGAVGAPG 1068
Query: 407 AACRDREPAPETPARPLA----------LGPLPRPGLRSARPPRQCRGEHRLGPHAPMPS 456
A P P P +GP G R + P+ RG+ A P
Sbjct: 1069 APGPPGSPGPAGPTGKQGDRGEAGAQGPMGPSGPAGARGIQGPQGPRGDKG---EAGEPG 1125
Query: 457 PRCPGEAQGVTDGRRASPSAPGGDQDRVSTTPQPTAQPGSGAGPQRP-GPTQKRGGRGVR 515
R +G T G + P PG D+ ++ P A P GP P GP+ K G G+
Sbjct: 1126 ERGLKGHRGFT-GLQGLPGPPGPSGDQGASGP---AGPSGPRGPPGPVGPSGKDGANGIP 1181
Query: 516 VPEGSPARIAFSGRRGGA 533
P G P SG G A
Sbjct: 1182 GPIGPPGPRGRSGETGPA 1199
Score = 39.7 bits (91), Expect = 0.008
Identities = 62/239 (25%), Positives = 79/239 (33%), Gaps = 42/239 (17%)
Query: 410 RDREPAPETPARPLALGPLPRPG---------LRSARPPRQCRGEHRL----GPHAPMPS 456
R R+ P TP P GP PG + A + G +L GP PM
Sbjct: 149 RGRDGEPGTPGNPGPPGPPGPPGPPGLGGNFAAQMAGGFDEKAGGAQLGVMQGPMGPM-G 207
Query: 457 PRCPGEAQGV--TDGRRASPSAPGGDQDRVS------TTPQPTAQPGSGAGPQRPGPTQK 508
PR P G G + +P PG + VS P P +PG +PG +
Sbjct: 208 PRGPPGPAGAPGPQGFQGNPGEPG--EPGVSGPMGPRGPPGPPGKPGDDGEAGKPGKAGE 265
Query: 509 R---GGRGVRVPEGSPARIAFSGRRG-----GAKAQ---PMAEAESLGDRERRDGGGAAG 557
R G +G R G+P G RG GAK + P + ES E G
Sbjct: 266 RGPPGPQGARGFPGTPGLPGVKGHRGYPGLDGAKGEAGAPGVKGESGSPGENGSPGPMGP 325
Query: 558 GGAVAQLRAVGQGALCAAPRDSG-------PRVCATVESGGIPRDPGGQGHTLPENTWG 609
G + G A + G P G P PG +G P G
Sbjct: 326 RGLPGERGRTGPAGAAGARGNDGQPGPAGPPGPVGPAGGPGFPGAPGAKGEAGPTGARG 384
>gi|111118974 collagen, type II, alpha 1 isoform 2 precursor [Homo
sapiens]
Length = 1418
Score = 67.4 bits (163), Expect = 4e-11
Identities = 128/501 (25%), Positives = 156/501 (31%), Gaps = 107/501 (21%)
Query: 134 YGGHQQGGHDEEADGLVRALLQDS-GCEALLAGPGPIQGGGNWELFPRKQCSQGRPGLPT 192
+ GG DE+A G ++Q G PGP P Q QG PG P
Sbjct: 110 FAAQMAGGFDEKAGGAQLGVMQGPMGPMGPRGPPGPAGA-------PGPQGFQGNPGEP- 161
Query: 193 RTMPRDTGQPTRTMLWDTGQPCVL----PQGPAVTPPAFPGVQETLPSLPVAPGAPGQRG 248
G+P V P+GP PP PG PG G+RG
Sbjct: 162 ------------------GEPGVSGPMGPRGPP-GPPGKPGDDGEAGK----PGKAGERG 198
Query: 249 RPSPYSLRVRGPRQDLPHLDGLHGAHDHHGLGHASAQAAQQPTRAVQPSLGIPHVVAEEL 308
P P R P L G+ G + GL A +A G P V E
Sbjct: 199 PPGPQGAR---GFPGTPGLPGVKGHRGYPGLDGAKGEA------------GAPGVKGES- 242
Query: 309 EHSKPGGGRRSRELRPRYRPRTPWLRTVCRTQSPGGGGGQDPTALGAAALGTRPPRRRGL 368
PG + PR P RT G G + A P G
Sbjct: 243 --GSPGENGSPGPMGPRGLPGERG-----RTGPAGAAGARGNDGQPGPAGPPGPVGPAGG 295
Query: 369 PLLTDAPVPRRVRALVQLQLRLHVLGGEGDADLDATR-QAACRDREPAPETPARPLALGP 427
P AP G +G+A R + P TP P G
Sbjct: 296 PGFPGAP------------------GAKGEAGPTGARGPEGAQGPRGEPGTPGSPGPAGA 337
Query: 428 LPRPGLRSARPPRQCRGEHRLGPHAPMPSPRCPGEAQGVTD-----GRRASPSAPG--GD 480
PG + G + P PR P QG T G+ P G G+
Sbjct: 338 SGNPGTDGIPGAKGSAGAPGIAGAPGFPGPRGPPGPQGATGPLGPKGQTGEPGIAGFKGE 397
Query: 481 QDRVSTTPQPTAQPGSGAGPQ-RPGPTQKRGGRGVRVPEGSPARIAFSGRRG--GAKAQP 537
Q P +PG AGPQ PGP + G RG R G I G RG G + P
Sbjct: 398 QG-------PKGEPGP-AGPQGAPGPAGEEGKRGARGEPGGVGPIGPPGERGAPGNRGFP 449
Query: 538 MAE--AESLGDRERRDGGGAAG-------GGAVAQLRAVGQGALCAAPRDSGPRVCATVE 588
+ A G R G AG G + G L P D+GP+ V
Sbjct: 450 GQDGLAGPKGAPGERGPSGLAGPKGANGDPGRPGEPGLPGARGLTGRPGDAGPQ--GKVG 507
Query: 589 SGGIPRDPGGQGHTLPENTWG 609
G P + G G P+ G
Sbjct: 508 PSGAPGEDGRPGPPGPQGARG 528
Score = 52.4 bits (124), Expect = 1e-06
Identities = 120/475 (25%), Positives = 149/475 (31%), Gaps = 76/475 (16%)
Query: 166 PGPIQGGGNWELFPRKQCSQGRPGLPTRTMPRDTGQPTRTMLWDTGQPCVLPQGPAVTP- 224
PGP+ G FP ++G G PT + Q R G P P G + P
Sbjct: 287 PGPVGPAGG-PGFPGAPGAKGEAG-PTGARGPEGAQGPRGEPGTPGSPG--PAGASGNPG 342
Query: 225 -PAFPGVQETL--PSLPVAPGAPGQRGRPSPYSLR-VRGPRQDL--PHLDGLHGAHDHHG 278
PG + + P + APG PG RG P P GP+ P + G G G
Sbjct: 343 TDGIPGAKGSAGAPGIAGAPGFPGPRGPPGPQGATGPLGPKGQTGEPGIAGFKGEQGPKG 402
Query: 279 L-GHASAQAAQQPT-----RAVQPSLGIPHVVAEELEHSKPGGGRRSRELRPRYRPRTPW 332
G A Q A P R + G + E PG R P
Sbjct: 403 EPGPAGPQGAPGPAGEEGKRGARGEPGGVGPIGPPGERGAPGN---------RGFPGQDG 453
Query: 333 LRTVCRTQSPGGGGGQDPTALGAAALGTRPPRRRGLPLLTDAPVPRRVRALVQLQLRLHV 392
L G G + P+ L P R G P L A R L
Sbjct: 454 L-----AGPKGAPGERGPSGLAGPKGANGDPGRPGEPGLPGA------RGLT-------- 494
Query: 393 LGGEGDADLDAT---RQAACRDREPAPETPARPLALGPLPRPGLRSARPPRQCRGEHRLG 449
G GDA A D P P P G +PG+ P+ GE
Sbjct: 495 -GRPGDAGPQGKVGPSGAPGEDGRPGPPGPQ-----GARGQPGVMGFPGPKGANGEPGKA 548
Query: 450 PHAPMPSPR----CPGEAQGVTDGRRASPSAPGGDQDRVSTTPQPTAQPGSGAGPQRPGP 505
+P PG+ P+ P G++ P P+ G P PG
Sbjct: 549 GEKGLPGAPGLRGLPGKDGETGAAGPPGPAGPAGERGEQGA-PGPSGFQGLPGPPGPPGE 607
Query: 506 TQKRGGRGVRVPEGSPARI------AFSGRRGGAKAQPMAEAESLGDRERRDGGGAAGGG 559
K G +GV G+P + F G RG AQ + L DG A G
Sbjct: 608 GGKPGDQGVPGEAGAPGLVGPRGERGFPGERGSPGAQGLQGPRGLPGTPGTDGPKGASGP 667
Query: 560 AVAQLRAVGQGALCAAPRDSGPRVCA--------TVESG--GIPRDPGGQGHTLP 604
A A G L P + G A E G G P GG+G T P
Sbjct: 668 A-GPPGAQGPPGLQGMPGERGAAGIAGPKGDRGDVGEKGPEGAPGKDGGRGLTGP 721
Score = 52.0 bits (123), Expect = 2e-06
Identities = 118/442 (26%), Positives = 144/442 (32%), Gaps = 88/442 (19%)
Query: 211 GQPCVL----PQGPAVTP--------PAFPGVQETLPSLPVAPGAPGQRGRPSPYSLRVR 258
GQP V+ P+G P P PG++ LP G G G P P
Sbjct: 528 GQPGVMGFPGPKGANGEPGKAGEKGLPGAPGLR----GLPGKDGETGAAGPPGPAGPAGE 583
Query: 259 GPRQDLPHLDGLHGAHDHHGLGHASAQAAQQPTRAVQPSLGIPHVVAEELEHSKPG--GG 316
Q P G G G + + + V G P +V E PG G
Sbjct: 584 RGEQGAPGPSGFQGLPGPPG---PPGEGGKPGDQGVPGEAGAPGLVGPRGERGFPGERGS 640
Query: 317 RRSRELR-PRYRPRTPWLRTVCRTQSPGGG-GGQDPTAL-------GAAAL--------- 358
++ L+ PR P TP P G G Q P L GAA +
Sbjct: 641 PGAQGLQGPRGLPGTPGTDGPKGASGPAGPPGAQGPPGLQGMPGERGAAGIAGPKGDRGD 700
Query: 359 -GTRPPRR-------RGLPLLTDAPVPRRVRALVQLQLRLHVLGGEGDADLDATRQAACR 410
G + P RGL P P +G G A R A
Sbjct: 701 VGEKGPEGAPGKDGGRGLTGPIGPPGPAGANG------EKGEVGPPGPAGSAGARGAPGE 754
Query: 411 DREPAPETPAR----PLALGPLPRPGLRSARPPRQCRGEHRL-GPHAPMPSPRCPGEAQG 465
E P PA P A G +PG + + +G+ GP P +P G G
Sbjct: 755 RGETGPPGPAGFAGPPGADG---QPGAKGEQGEAGQKGDAGAPGPQGPSGAPGPQGPT-G 810
Query: 466 VTD--GRRASPSAPG-----GDQDRVSTTPQPTAQPGSGAGPQRPGPTQKRGGRGVRVPE 518
VT G R + PG G RV P G+ P PGP+ K G +G R
Sbjct: 811 VTGPKGARGAQGPPGATGFPGAAGRVG----PPGSNGNPGPPGPPGPSGKDGPKGARGDS 866
Query: 519 GSPARIAFSGRRGGAKAQPMAEAESLGDRERRDGGGAAGGGAVAQLRAVGQGALCAAPRD 578
G P R G +G A P E GD DG A G Q A GQ + P
Sbjct: 867 GPPGRAGEPGLQG--PAGPPGEKGEPGD----DGPSGAEGPPGPQGLA-GQRGIVGLPGQ 919
Query: 579 SGPRVCATVESGGIPRDPGGQG 600
G R G P PG G
Sbjct: 920 RGER--------GFPGLPGPSG 933
Score = 48.1 bits (113), Expect = 2e-05
Identities = 106/419 (25%), Positives = 128/419 (30%), Gaps = 71/419 (16%)
Query: 235 PSLPVAPGAPGQRGRPSPYSLRVRGPRQ------------DLPHLDGLHGAHDHHG-LGH 281
P P PG PG G P P L Q L + G G G G
Sbjct: 86 PGTPGNPGPPGPPGPPGPPGLGGNFAAQMAGGFDEKAGGAQLGVMQGPMGPMGPRGPPGP 145
Query: 282 ASAQAAQ----QPTRAVQPSL----------GIPHVVAEELEHSKPGGGRRSRELRP--- 324
A A Q P +P + G P ++ E KPG P
Sbjct: 146 AGAPGPQGFQGNPGEPGEPGVSGPMGPRGPPGPPGKPGDDGEAGKPGKAGERGPPGPQGA 205
Query: 325 RYRPRTPWLRTVCRTQSPGGGGGQDPTALGAAALGTRPPRRRGLPLLTDAPVPRRVRALV 384
R P TP L V + G G D A A G + G P +P P R L
Sbjct: 206 RGFPGTPGLPGV---KGHRGYPGLDGAKGEAGAPGVK--GESGSPGENGSPGPMGPRGLP 260
Query: 385 QLQLRLHVLGGEGDADLDATRQAACRDREPAPETPARPLALGPLP----RPGLRSARPPR 440
+ R G G A D +P P P P+ P PG + P
Sbjct: 261 GERGRTGPAGAAG---------ARGNDGQPGPAGPPGPVGPAGGPGFPGAPGAKGEAGPT 311
Query: 441 QCRG-EHRLGPHAPMPSPRCPGEAQGVTDGRRASPSAPGGDQDRVSTTPQPTAQPGSGAG 499
RG E GP +P PG A G + PG + P PG
Sbjct: 312 GARGPEGAQGPRGEPGTPGSPGPAG--ASGNPGTDGIPGAKGS--AGAPGIAGAPGFPGP 367
Query: 500 PQRPGPTQKRGGRGVRVPEGSPARIAFSGRRG----GAKAQPMAEAESLGDRERRDGGGA 555
PGP G G + G P F G +G A P G+ +R G
Sbjct: 368 RGPPGPQGATGPLGPKGQTGEPGIAGFKGEQGPKGEPGPAGPQGAPGPAGEEGKRGARGE 427
Query: 556 AGG----------GAVAQLRAVGQGALC---AAPRDSGPRVCATVE-SGGIPRDPGGQG 600
GG GA GQ L AP + GP A + + G P PG G
Sbjct: 428 PGGVGPIGPPGERGAPGNRGFPGQDGLAGPKGAPGERGPSGLAGPKGANGDPGRPGEPG 486
Score = 44.3 bits (103), Expect = 3e-04
Identities = 115/463 (24%), Positives = 138/463 (29%), Gaps = 92/463 (19%)
Query: 164 AGPGPIQGGGNWELFPRKQCSQGRPGLPTRTMPRDTGQ--PTRTMLWDTGQPCVLPQGPA 221
AGP QG + P ++ + G G + D G+ P D G+ P GP
Sbjct: 668 AGPPGAQGPPGLQGMPGERGAAGIAG--PKGDRGDVGEKGPEGAPGKDGGRGLTGPIGPP 725
Query: 222 VTPPAFPGVQETLPSLPV----APGAPGQRGRPSPYS-LRVRGPRQDLPHLDGLHGAHDH 276
A E P P A GAPG+RG P GP P DG GA
Sbjct: 726 GPAGANGEKGEVGPPGPAGSAGARGAPGERGETGPPGPAGFAGP----PGADGQPGAKGE 781
Query: 277 HG----LGHASAQAAQQPTRAVQPS--LGIPHVVAEELEHSKPGGGRRSRELRPRYRPRT 330
G G A A Q P+ A P G+ PG T
Sbjct: 782 QGEAGQKGDAGAPGPQGPSGAPGPQGPTGVTGPKGARGAQGPPGA--------------T 827
Query: 331 PWLRTVCRTQSPGGGGGQDPTALGAAALGTRPPRRRGLPLLTDAPVPRRVRALVQLQLRL 390
+ R PG G P + P RG D+ P R
Sbjct: 828 GFPGAAGRVGPPGSNGNPGPPGPPGPSGKDGPKGARG-----DSGPPGRA---------- 872
Query: 391 HVLGGEGDADLDATRQAACRDREPAPETPARPLALGPLPRPGLRSARP----PRQCRGEH 446
G+ L EP + P+ A GP GL R P Q RGE
Sbjct: 873 ------GEPGLQGPAGPPGEKGEPGDDGPSG--AEGPPGPQGLAGQRGIVGLPGQ-RGER 923
Query: 447 RLGPHAPMPSPRCPGEAQGVTDGRRASPSAPGGDQDRVSTTPQ-------PTAQPGSGAG 499
P P PS G APG DR P P +PG
Sbjct: 924 GF-PGLPGPS------------GEPGKQGAPGASGDRGPPGPVGPPGLTGPAGEPGREGS 970
Query: 500 PQRPGPTQKRGGRGVRVPEGSPARIAFSGRRG-GAKAQPMAEAESLGDRERRDGGGAAGG 558
P GP + G GV+ G + G G P GDR G G
Sbjct: 971 PGADGPPGRDGAAGVKGDRGETGAVGAPGAPGPPGSPGPAGPTGKQGDRGEAGAQGPMGP 1030
Query: 559 GAVAQLRAVGQGALCAAPRDSGPRVCATVESGGIPRDPGGQGH 601
A R + QG GPR G P + G +GH
Sbjct: 1031 SGPAGARGI-QG-------PQGPR--GDKGEAGEPGERGLKGH 1063
Score = 43.9 bits (102), Expect = 4e-04
Identities = 112/470 (23%), Positives = 148/470 (31%), Gaps = 110/470 (23%)
Query: 165 GPGPIQGGGNWELFPRKQCSQGRPGLPTRTMPRDTGQPTRTMLWDTGQPCVLPQGPAVTP 224
GP +G FP + G G P P P + D G+P
Sbjct: 435 GPPGERGAPGNRGFPGQDGLAGPKGAPGERGPSGLAGP-KGANGDPGRP---------GE 484
Query: 225 PAFPGVQ-------ETLPSLPVAP-GAPGQRGRPSPYSLRVRGPRQDLPHLDGLHGAHDH 276
P PG + + P V P GAPG+ GRP P GP Q G+ G
Sbjct: 485 PGLPGARGLTGRPGDAGPQGKVGPSGAPGEDGRPGP-----PGP-QGARGQPGVMGFPGP 538
Query: 277 HGLGHASAQAAQQPTRAVQPSLGIPHVVAEELEHSKPGGGRRSRELRPRYRPRTPWLRTV 336
G +A ++ G+P E PG + E + P + +
Sbjct: 539 KGANGEPGKAGEKGLPGAPGLRGLPGKDGETGAAGPPGPAGPAGERGEQGAPGPSGFQGL 598
Query: 337 CRTQSPGGGGGQDPTALGAAALGTRPPRRRGLPLLTDAPVPRRVRALVQLQLRLHVLGGE 396
P G GG+ P +G+P AP ++G
Sbjct: 599 PGPPGPPGEGGK--------------PGDQGVPGEAGAP---------------GLVGPR 629
Query: 397 GDADLDATRQAACRDREPAPETPARPLALGPLPRPGLRSARPPRQCRGEHRLGPHAPMPS 456
G+ R + P GP PG P+ G P P P
Sbjct: 630 GERGFPGERGS-----------PGAQGLQGPRGLPGTPGTDGPKGASG-----PAGP-PG 672
Query: 457 PRCPGEAQGVTDGRRASPSA-PGGDQDRVSTTPQPTAQPGSGAGPQRPGPTQKRGGRGVR 515
+ P QG+ R A+ A P GD+ V GP+ G K GGRG+
Sbjct: 673 AQGPPGLQGMPGERGAAGIAGPKGDRGDVGEK-----------GPE--GAPGKDGGRGLT 719
Query: 516 VPEGSPARIAFSGRRGGAKAQPMAEAESLGDR----ERRDGG--GAAG----------GG 559
P G P +G +G + P A S G R ER + G G AG G
Sbjct: 720 GPIGPPGPAGANGEKG--EVGPPGPAGSAGARGAPGERGETGPPGPAGFAGPPGADGQPG 777
Query: 560 AVAQLRAVGQGALCAAPRDSGPRVCATVESGGIPRDPGGQGHTLPENTWG 609
A + GQ AP GP G P G G T P+ G
Sbjct: 778 AKGEQGEAGQKGDAGAPGPQGP--------SGAPGPQGPTGVTGPKGARG 819
Score = 40.4 bits (93), Expect = 0.005
Identities = 84/318 (26%), Positives = 108/318 (33%), Gaps = 54/318 (16%)
Query: 238 PVAPGAPGQRGRPSPYSLRV-RGP--RQDLPHLDGLHGAHDHHGL----GHASAQAAQQP 290
P PG PG G+ P R GP R P L G G G G + A+ P
Sbjct: 845 PGPPGPPGPSGKDGPKGARGDSGPPGRAGEPGLQGPAGPPGEKGEPGDDGPSGAEGPPGP 904
Query: 291 TRAVQPSLGIPHVVAEELEHSKPGGGRRSRELRPRYRPRTPWLRTVCRTQSPGGGGGQDP 350
+ + GI + + E PG S E + +PG G + P
Sbjct: 905 -QGLAGQRGIVGLPGQRGERGFPGLPGPSGEPG--------------KQGAPGASGDRGP 949
Query: 351 TA-LGAAALGTRP---PRRRGLPLLTDAPVPRRVRALVQLQLRLHVLGGEGDADLDATRQ 406
+G L T P P R G P D P R A V+ G G+
Sbjct: 950 PGPVGPPGL-TGPAGEPGREGSPG-ADGPPGRDGAAGVK--------GDRGETGAVGAPG 999
Query: 407 AACRDREPAPETPARPLA----------LGPLPRPGLRSARPPRQCRGEHRLGPHAPMPS 456
A P P P +GP G R + P+ RG+ A P
Sbjct: 1000 APGPPGSPGPAGPTGKQGDRGEAGAQGPMGPSGPAGARGIQGPQGPRGDKG---EAGEPG 1056
Query: 457 PRCPGEAQGVTDGRRASPSAPGGDQDRVSTTPQPTAQPGSGAGPQRP-GPTQKRGGRGVR 515
R +G T G + P PG D+ ++ P A P GP P GP+ K G G+
Sbjct: 1057 ERGLKGHRGFT-GLQGLPGPPGPSGDQGASGP---AGPSGPRGPPGPVGPSGKDGANGIP 1112
Query: 516 VPEGSPARIAFSGRRGGA 533
P G P SG G A
Sbjct: 1113 GPIGPPGPRGRSGETGPA 1130
Score = 39.7 bits (91), Expect = 0.008
Identities = 62/239 (25%), Positives = 79/239 (33%), Gaps = 42/239 (17%)
Query: 410 RDREPAPETPARPLALGPLPRPG---------LRSARPPRQCRGEHRL----GPHAPMPS 456
R R+ P TP P GP PG + A + G +L GP PM
Sbjct: 80 RGRDGEPGTPGNPGPPGPPGPPGPPGLGGNFAAQMAGGFDEKAGGAQLGVMQGPMGPM-G 138
Query: 457 PRCPGEAQGV--TDGRRASPSAPGGDQDRVS------TTPQPTAQPGSGAGPQRPGPTQK 508
PR P G G + +P PG + VS P P +PG +PG +
Sbjct: 139 PRGPPGPAGAPGPQGFQGNPGEPG--EPGVSGPMGPRGPPGPPGKPGDDGEAGKPGKAGE 196
Query: 509 R---GGRGVRVPEGSPARIAFSGRRG-----GAKAQ---PMAEAESLGDRERRDGGGAAG 557
R G +G R G+P G RG GAK + P + ES E G
Sbjct: 197 RGPPGPQGARGFPGTPGLPGVKGHRGYPGLDGAKGEAGAPGVKGESGSPGENGSPGPMGP 256
Query: 558 GGAVAQLRAVGQGALCAAPRDSG-------PRVCATVESGGIPRDPGGQGHTLPENTWG 609
G + G A + G P G P PG +G P G
Sbjct: 257 RGLPGERGRTGPAGAAGARGNDGQPGPAGPPGPVGPAGGPGFPGAPGAKGEAGPTGARG 315
>gi|4502951 collagen type III alpha 1 preproprotein [Homo sapiens]
Length = 1466
Score = 66.6 bits (161), Expect = 6e-11
Identities = 121/467 (25%), Positives = 151/467 (32%), Gaps = 79/467 (16%)
Query: 181 KQCSQGRPGLPTRTMPRDTGQPTRTMLWDTGQPCVLPQGPAVTPPAFPGVQ--------- 231
K GRPG P + G P G P + +GPA P FPG++
Sbjct: 229 KDGESGRPG-----RPGERGLP--------GPPGI--KGPAGIP-GFPGMKGHRGFDGRN 272
Query: 232 ----ET-LPSLPVAPGAPGQRGRPSPYSLRVRGPRQDLPHLDGLHGAHDHHGLGHASAQA 286
ET P L G PG+ G P P R + P L G GA + G + Q
Sbjct: 273 GEKGETGAPGLKGENGLPGENGAPGPMGPRGAPGERGRPGLPGAAGARGNDGARGSDGQP 332
Query: 287 AQQPTRAVQPSLGIPHVVAEELEHSKPGG----GRRSR-----ELRPRYRPRTPWLRTVC 337
G P E PG G+R + P P +
Sbjct: 333 GPPGPPGTAGFPGSPGAKGEVGPAGSPGSNGAPGQRGEPGPQGHAGAQGPPGPPGI---- 388
Query: 338 RTQSPGGGGGQDPTALGAA--ALGTR----PPRRRGLP-LLTDAPVPRRVRALVQLQLRL 390
SPGG G P + A +G R P G P L A P + A + R
Sbjct: 389 -NGSPGGKGEMGPAGIPGAPGLMGARGPPGPAGANGAPGLRGGAGEPGKNGAKGEPGPR- 446
Query: 391 HVLGGEGDADLDATRQAACRD-REPAPETPAR---PLALGPLPRPGLRSARPPRQCRGEH 446
G G+A + A D ++ +P P P A G PG R P GE
Sbjct: 447 ---GERGEAGIPGVPGAKGEDGKDGSPGEPGANGLPGAAGERGAPGFRGPAGPNGIPGEK 503
Query: 447 RLGPHAPMPSPRCPGEAQGVT--------DGRRASPSAPGGDQDRVSTTPQPTAQPGSGA 498
P P P A G G R P +PGG P P G
Sbjct: 504 GPAGERGAPGPAGPRGAAGEPGRDGVPGGPGMRGMPGSPGGPGS--DGKPGPPGSQGESG 561
Query: 499 GPQRPGPTQKRGGRGVR---VPEGSPARIAFSGRRGGAKAQ-PMAEAESLGDRERRDGGG 554
P PGP+ RG GV P+G+ +G RGG P G+ + G
Sbjct: 562 RPGPPGPSGPRGQPGVMGFPGPKGNDGAPGKNGERGGPGGPGPQGPPGKNGETGPQGPPG 621
Query: 555 AAG-GGAVAQLRAVGQGALCAAPRDSGPRVCATVESGGIPRDPGGQG 600
G GG G L P GP G P +PG +G
Sbjct: 622 PTGPGGDKGDTGPPGPQGLQGLPGTGGP-----PGENGKPGEPGPKG 663
Score = 62.4 bits (150), Expect = 1e-09
Identities = 115/450 (25%), Positives = 140/450 (31%), Gaps = 71/450 (15%)
Query: 186 GRPGLPTRTMPRDTGQPTRTMLWDTGQPCVLPQGPAVTPPAFPGVQETLPSLPVAPGAPG 245
G G+P + PR P GQP +G A P PG+ S PG G
Sbjct: 750 GADGVPGKDGPRGPTGPIGPP-GPAGQPGDKGEGGA---PGLPGIAGPRGS----PGERG 801
Query: 246 QRGRPSPYSLRVRGPRQDLPHLDGLHGAHDHHGLGHASAQAAQQPTRAVQPSLGIPHVVA 305
+ G P P + P G GA G G A P P+ G P
Sbjct: 802 ETGPPGPAGFPGAPGQNGEPGGKGERGAPGEKGEGGPPGVAG--PPGGSGPA-GPPGPQG 858
Query: 306 EELEHSKPGGGRRSRELRPRYRPRTPWLRTVCRTQSPGGGGGQDPTALGAAALGTRPPRR 365
+ E PGG + R P P P G G+D PP
Sbjct: 859 VKGERGSPGGPGAAGFPGARGLPGPPGSNGNPGPPGPSGSPGKDG-----------PPGP 907
Query: 366 RGLPLLTDAPVPRRVRALVQLQLRLHVLGGEGDADLDATRQAACRDREPAPETP------ 419
G +P V G +GDA + + P P
Sbjct: 908 AGNTGAPGSP---------------GVSGPKGDAGQPGEKGSPGAQGPPGAPGPLGIAGI 952
Query: 420 --ARPLALGPLPRPGLRSARPPRQCRGEH----------RLGPHAPMPSPRCPGEA---- 463
AR LA GP PG R + P+ +GE GP P P G A
Sbjct: 953 TGARGLA-GPPGMPGPRGSPGPQGVKGESGKPGANGLSGERGPPGPQGLPGLAGTAGEPG 1011
Query: 464 ---QGVTDGRRASPSAPGGDQDRVST-TPQPTAQPGSGAGPQRPGPTQKRGGRGVRVPEG 519
+DG +PGG DR +P PG P GP K G RG P G
Sbjct: 1012 RDGNPGSDGLPGRDGSPGGKGDRGENGSPGAPGAPGHPGPPGPVGPAGKSGDRGESGPAG 1071
Query: 520 SPARIAFSGRRGGAKAQ-PMAEAESLGDRERRDGGGAAG----GGAVAQLRAVGQGALCA 574
+G RG Q P + G+R G G GA GQ
Sbjct: 1072 PAGAPGPAGSRGAPGPQGPRGDKGETGERGAAGIKGHRGFPGNPGAPGSPGPAGQQGAIG 1131
Query: 575 APRDSGPRVCATVESGGIPRDPGGQGHTLP 604
+P +GPR V G P G GH P
Sbjct: 1132 SPGPAGPR--GPVGPSGPPGKDGTSGHPGP 1159
Score = 60.1 bits (144), Expect = 6e-09
Identities = 119/456 (26%), Positives = 139/456 (30%), Gaps = 98/456 (21%)
Query: 179 PRKQCSQGRPGLPTRTMPRDTGQPTRTMLWDTGQPCVL----PQGPAVTP--------PA 226
P Q GRPG P + PR GQP V+ P+G P P
Sbjct: 554 PGSQGESGRPGPPGPSGPR-------------GQPGVMGFPGPKGNDGAPGKNGERGGPG 600
Query: 227 FPGVQ-------ETLPSLPVAPGAPG----QRGRPSPYSLRVRGPRQDLPHLDGLHGAHD 275
PG Q ET P P P PG G P P L Q LP G G +
Sbjct: 601 GPGPQGPPGKNGETGPQGPPGPTGPGGDKGDTGPPGPQGL------QGLPGTGGPPGENG 654
Query: 276 HHGLGHASAQAAQQPTRAVQPSLGIPHVVAEELEHSKPGGGRRSRELRPRYRPRTPWLRT 335
G A G P + + PG E P P LR
Sbjct: 655 KPGEPGPKGDA------------GAPGAPGGKGDAGAPG------ERGPPGLAGAPGLRG 696
Query: 336 VCRTQSPGGGGGQ-----DPTALGAAALGTRPPRRRGLPLLTDAPVPRRVRALVQLQLRL 390
P GG G P A G L P R GL +P P+ +
Sbjct: 697 GAGPPGPEGGKGAAGPPGPPGAAGTPGLQGMPGERGGL----GSPGPKGDKG------EP 746
Query: 391 HVLGGEGDADLDATRQAACRDREPAPETPARPLALGPLPRPGLRSARPPRQCRGEH-RLG 449
G +G D R P P +P G PGL PR GE G
Sbjct: 747 GGPGADGVPGKDGPRGPTGPIGPPGPA--GQPGDKGEGGAPGLPGIAGPRGSPGERGETG 804
Query: 450 PHAPMPSPRCPGEAQGVTDGRRASPSAPGGDQDRVSTTPQPTAQPGSGAGPQRPGPTQKR 509
P P P PG Q G + APG ++ P A P G+GP GP +
Sbjct: 805 PPGPAGFPGAPG--QNGEPGGKGERGAPG---EKGEGGPPGVAGPPGGSGPA--GPPGPQ 857
Query: 510 GGRGVRVPEGSPARIAFSGRRG-----GAKAQPMAEAESLGDRERRDGGGAAGGGAVAQL 564
G +G R G P F G RG G+ P S + G A GA
Sbjct: 858 GVKGERGSPGGPGAAGFPGARGLPGPPGSNGNPGPPGPSGSPGKDGPPGPAGNTGAPGSP 917
Query: 565 RAVGQGALCAAPRDSGPRVCATVESGGIPRDPGGQG 600
G P + G S G PG G
Sbjct: 918 GVSGPKGDAGQPGEKG--------SPGAQGPPGAPG 945
Score = 56.2 bits (134), Expect = 8e-08
Identities = 109/405 (26%), Positives = 133/405 (32%), Gaps = 52/405 (12%)
Query: 217 PQGPAVTP--PAFPGVQETLPSLPVAPGAPGQRGRPSPYSLRVRGPRQDLPHLDGLHGAH 274
PQGP P P PG + P +P PG+PG G P GP+ P D ++
Sbjct: 104 PQGPKGDPGPPGIPG-RNGDPGIPGQPGSPGSPGPPGICESCPTGPQNYSPQYD----SY 158
Query: 275 DHHGLGHASAQAAQQPTRAVQPSLGIPHVVAEELEHSKPGGGRRSRELRPRYR--PRTPW 332
D G A A P A P G P PG P Y+ P P
Sbjct: 159 DVKS-GVAVGGLAGYPGPAGPP--GPPGPPGTSGHPGSPGS--------PGYQGPPGEPG 207
Query: 333 LRTVCRTQSPGGGGGQDPTALGAAALGTRP--PRRRGLPLLTDAPVPRRVRALVQLQLRL 390
P G G A G RP P RGLP P + ++
Sbjct: 208 QAGPSGPPGPPGAIGPSGPA-GKDGESGRPGRPGERGLPGPPGIKGPAGIPGFPGMKGHR 266
Query: 391 HVLGGEGDADLDATRQAACRDREPAPETPARPLALGPLPRPGLR---------SARPPRQ 441
G G+ T + P P +GP PG R AR
Sbjct: 267 GFDGRNGEK--GETGAPGLKGENGLPGENGAPGPMGPRGAPGERGRPGLPGAAGARGNDG 324
Query: 442 CRG-EHRLGPHAPMPSPRCPGE--AQGVTDGRRASPSAPGGDQDRVSTTPQPTAQPGSGA 498
RG + + GP P + PG A+G G SP + G R P P G+
Sbjct: 325 ARGSDGQPGPPGPPGTAGFPGSPGAKGEV-GPAGSPGSNGAPGQR--GEPGPQGHAGAQG 381
Query: 499 GPQRPGPTQKRGGRGVRVPEGSPARIAFSGRRGGAKAQPMAEAESLGDRERRDGGGAAG- 557
P PG GG+G P G P G RG P A + G R G G G
Sbjct: 382 PPGPPGINGSPGGKGEMGPAGIPGAPGLMGARG-----PPGPAGANGAPGLRGGAGEPGK 436
Query: 558 GGAVAQLRAVGQGALCAAPRDSGPRVCATVESG--GIPRDPGGQG 600
GA + G+ P G A E G G P +PG G
Sbjct: 437 NGAKGEPGPRGERGEAGIPGVPG----AKGEDGKDGSPGEPGANG 477
Score = 51.6 bits (122), Expect = 2e-06
Identities = 117/444 (26%), Positives = 134/444 (30%), Gaps = 66/444 (14%)
Query: 181 KQCSQGRPGLPTRTMPRDTGQPTRTMLWDTGQPCVLP--QGPA----VTPPAFPGVQETL 234
K S G PG +P G+ P +P +GPA PA P
Sbjct: 466 KDGSPGEPG--ANGLPGAAGERGAPGFRGPAGPNGIPGEKGPAGERGAPGPAGPRGAAGE 523
Query: 235 PSLPVAPGAPGQRGRPSPYSLRVRGPRQD-LPHLDGLHGAHDHHGLGHASAQAAQQPTRA 293
P PG PG RG P GP D P G G G S Q
Sbjct: 524 PGRDGVPGGPGMRGMPGSPG----GPGSDGKPGPPGSQGESGRPGPPGPSGPRGQPGVMG 579
Query: 294 VQPSLGIPHVVAEELEHSKPGGGRRSRELRPRYRPRTPWLRTVCRTQSPGGGGGQDPTAL 353
G + E PGG P+ P + G G PT
Sbjct: 580 FPGPKGNDGAPGKNGERGGPGGPG----------PQGP----PGKNGETGPQGPPGPTGP 625
Query: 354 GAAALGTRPPRRRGLPLLTDAPVPRRVRALVQLQLRLHVLGGEGDADLDATRQAACRDRE 413
G T PP +GL L P + G +GDA
Sbjct: 626 GGDKGDTGPPGPQGLQGLPGTGGPPGENG------KPGEPGPKGDAGAPGAPGGKGDAGA 679
Query: 414 PAPETPARPLALGPLPRPGLRS-ARPPRQCRGEHRLGPHAPMPSPRCPGEAQGVTDGRRA 472
P P G PGLR A PP G+ GP P PG A T G +
Sbjct: 680 PGERGPP-----GLAGAPGLRGGAGPPGPEGGKGAAGPPGP------PGAAG--TPGLQG 726
Query: 473 SPSAPGGDQDRVSTTPQPTAQPGSGAGPQRPGPTQKRGGRGVRVPEGSPARIAFSGRR-- 530
P GG +P P G GP G K G RG P G P G +
Sbjct: 727 MPGERGG-----LGSPGPKGDKGEPGGPGADGVPGKDGPRGPTGPIGPPGPAGQPGDKGE 781
Query: 531 GGAKAQP--MAEAESLGDRERRDGGGAAG-GGAVAQLRAVGQGALCAAPRDSGPRVCATV 587
GGA P S G+R G AG GA Q G AP + G
Sbjct: 782 GGAPGLPGIAGPRGSPGERGETGPPGPAGFPGAPGQNGEPGGKGERGAPGEKG------- 834
Query: 588 ESG--GIPRDPGGQGHTLPENTWG 609
E G G+ PGG G P G
Sbjct: 835 EGGPPGVAGPPGGSGPAGPPGPQG 858
Score = 50.4 bits (119), Expect = 5e-06
Identities = 106/432 (24%), Positives = 133/432 (30%), Gaps = 97/432 (22%)
Query: 133 PYGGHQQGGHDEEADGLVRALLQDSGCEALLAGPGPIQGGGNWELFPRKQCSQGRPGLPT 192
P G ++G E+ +G + G PGP QG P + G PG
Sbjct: 821 PGGKGERGAPGEKGEGGPPGVAGPPGGSGPAGPPGP-QGVKGERGSPGGPGAAGFPG--A 877
Query: 193 RTMPRDTGQPTRTMLWDTGQPCVLPQGPAVTP----PAFPGVQETLPSLPVAPGAPGQRG 248
R +P G G P P GP+ +P P P P P G G G
Sbjct: 878 RGLPGPPGS--------NGNPG--PPGPSGSPGKDGPPGPAGNTGAPGSPGVSGPKGDAG 927
Query: 249 RPSPYSLRVRGPRQDLPHLDGLHGAHDHHGL-GHASAQAAQQPTRAVQPSLGIPHVVAEE 307
+P + P G GA G+ G A+ P P G P +
Sbjct: 928 QPG---------EKGSPGAQGPPGAPGPLGIAGITGARGLAGPPGMPGPR-GSPGPQGVK 977
Query: 308 LEHSKPGGGRRSRELRPRYRPRTPWLRTVCRTQSPGGGGGQDPTALGAAALGTRPPRRRG 367
E KPG S E P P L G G D G
Sbjct: 978 GESGKPGANGLSGERGPPGPQGLPGLAGTAGEPGRDGNPGSD-----------------G 1020
Query: 368 LPLLTDAPVPRRVRALVQLQLRLHVLGGEGDADLDATRQAACRDREPAPETPARPLA--- 424
LP +P GG+GD + + A P P P P
Sbjct: 1021 LPGRDGSP------------------GGKGDRGENGSPGAPGAPGHPGPPGPVGPAGKSG 1062
Query: 425 -------LGPLPRPGLRSARP------PRQCRGE-----------HRLGPHAPMPSPRCP 460
GP PG +R PR +GE HR P P +P P
Sbjct: 1063 DRGESGPAGPAGAPGPAGSRGAPGPQGPRGDKGETGERGAAGIKGHRGFPGNP-GAPGSP 1121
Query: 461 GEAQGVTDGRRASPSAPGGDQDRVSTTPQ-PTAQPGSGAGPQRPGPTQKRGGRGVRVPEG 519
G A G++ + +PG R P P + G+ P GP RG RG R EG
Sbjct: 1122 GPA-----GQQGAIGSPGPAGPRGPVGPSGPPGKDGTSGHPGPIGPPGPRGNRGERGSEG 1176
Query: 520 SPARIAFSGRRG 531
SP G G
Sbjct: 1177 SPGHPGQPGPPG 1188
Score = 47.8 bits (112), Expect = 3e-05
Identities = 105/414 (25%), Positives = 125/414 (30%), Gaps = 78/414 (18%)
Query: 217 PQGP-----AVTPPAFPGVQETLPSLPVAPGAPGQRGRPSPYSLRVR--GPRQD-LPHLD 268
P GP A PP PG T P L PG G G P P + GP D +P D
Sbjct: 700 PPGPEGGKGAAGPPGPPGAAGT-PGLQGMPGERGGLGSPGPKGDKGEPGGPGADGVPGKD 758
Query: 269 GLHGAHDHHGLGHASAQAAQQPTRAVQPSLGIPHVVAEELEHSKPGGGRRSRELRPRYRP 328
G G G A Q + + G+P + PG + P P
Sbjct: 759 GPRGPTGPIG---PPGPAGQPGDKGEGGAPGLPGIAGPR---GSPGERGETGPPGPAGFP 812
Query: 329 RTPWLRTVCRTQSPGGGGGQDPTALGAAALGTRPPRRRGLPLLTDA---PVPRRVRALVQ 385
P + PGG G + A G G PP G P + P P+ V+
Sbjct: 813 GAPG-----QNGEPGGKGERG--APGEKGEGG-PPGVAGPPGGSGPAGPPGPQGVKG--- 861
Query: 386 LQLRLHVLGGEGDADLDATRQAACRDREPAPETPARPLALGPLPRPGLRSARPPRQCRGE 445
GG G A R P + P GP PG PP
Sbjct: 862 ---ERGSPGGPGAAGFPGARGLP-----GPPGSNGNPGPPGPSGSPGKDG--PP------ 905
Query: 446 HRLGPHAPMPSPRCPGEAQGVTD----GRRASPSAPGGDQDRVSTTPQP------TAQPG 495
GP +P PG + D G + SP A G P P T G
Sbjct: 906 ---GPAGNTGAPGSPGVSGPKGDAGQPGEKGSPGAQGPPG-----APGPLGIAGITGARG 957
Query: 496 SGAGPQRPGPTQKRGGRGVRVPEGSPARIAFSGRRGGAKAQPMAEAESLGDRERRDGGGA 555
P PGP G +GV+ G P SG RG Q + RDG
Sbjct: 958 LAGPPGMPGPRGSPGPQGVKGESGKPGANGLSGERGPPGPQGLPGLAGTAGEPGRDGNPG 1017
Query: 556 AGGGAVAQLRAVGQGALCAAPRDSGPRVCATVESGGIPRDPGGQGHTLPENTWG 609
+ G RD P G P PG GH P G
Sbjct: 1018 SDG---------------LPGRDGSPGGKGDRGENGSPGAPGAPGHPGPPGPVG 1056
Score = 47.0 bits (110), Expect = 5e-05
Identities = 92/348 (26%), Positives = 115/348 (33%), Gaps = 53/348 (15%)
Query: 166 PGPIQGGGNWELFPRKQCSQGRPGLPTRTMPR-DTGQPTRTMLWDTGQPCVLPQGP--AV 222
PGP G + P + G PG P + P+ D GQP + G P QGP A
Sbjct: 893 PGP-SGSPGKDGPPGPAGNTGAPGSPGVSGPKGDAGQPG-----EKGSPGA--QGPPGAP 944
Query: 223 TPPAFPGVQETLPSLPVAPGAPGQRGRPSPYSLRVRGPRQDLPHLDGLHGAHDHHGLGHA 282
P G+ L PG PG RG P P ++ + L G G GL
Sbjct: 945 GPLGIAGITGAR-GLAGPPGMPGPRGSPGPQGVKGESGKPGANGLSGERGPPGPQGL-PG 1002
Query: 283 SAQAAQQPTRAVQP-SLGIPHVVAEELEHSKPGGGRRSRELRPRYRPRTPWLRTVCRTQS 341
A A +P R P S G+P PGG E P P
Sbjct: 1003 LAGTAGEPGRDGNPGSDGLPG------RDGSPGGKGDRGENGSPGAPGAPGHPGPPGPVG 1056
Query: 342 PGGGGGQDPTALGAAALGT-RPPRRRGLPLLTDAPVPRRVRALVQLQLRLHVLGGEGDAD 400
P G G + A G P RG AP P+ G GD
Sbjct: 1057 PAGKSGDRGESGPAGPAGAPGPAGSRG------APGPQ---------------GPRGDKG 1095
Query: 401 LDATRQAA-CRDREPAPETPARPLALGPLPRPGLRSARPPRQCRGEHRLGPHAPMPSPRC 459
R AA + P P P + GP + G + P RG +GP P
Sbjct: 1096 ETGERGAAGIKGHRGFPGNPGAPGSPGPAGQQGAIGSPGPAGPRGP--VGPSGP------ 1147
Query: 460 PGEAQGVTDGRRASPSAPGGDQDRVST--TPQPTAQPGSGAGPQRPGP 505
PG+ P P G++ + +P QPG P PGP
Sbjct: 1148 PGKDGTSGHPGPIGPPGPRGNRGERGSEGSPGHPGQPGPPGPPGAPGP 1195
Score = 41.2 bits (95), Expect = 0.003
Identities = 45/179 (25%), Positives = 59/179 (32%), Gaps = 36/179 (20%)
Query: 456 SPRCPGEAQGVTDGRRASPSAPGGDQDRVSTTPQPTAQPGSGAGPQRPGPTQKRGGRGVR 515
SP PG + +A PS P G + + P + G P RPG G G++
Sbjct: 193 SPGSPGYQGPPGEPGQAGPSGPPGPPGAIGPSG-PAGKDGESGRPGRPGERGLPGPPGIK 251
Query: 516 VPEGSPARIAFSGRRG-----GAKAQ--------------------PMAEAESLGDRERR 550
P G P G RG G K + PM + G+R R
Sbjct: 252 GPAGIPGFPGMKGHRGFDGRNGEKGETGAPGLKGENGLPGENGAPGPMGPRGAPGERGRP 311
Query: 551 DGGGAAGGGAVAQLRAVGQGALCAAPRDSGPRVCATVESGGIPRDPGGQGHTLPENTWG 609
GAAG +G A D P + G P PG +G P + G
Sbjct: 312 GLPGAAG----------ARGNDGARGSDGQPGPPGPPGTAGFPGSPGAKGEVGPAGSPG 360
Score = 35.0 bits (79), Expect = 0.20
Identities = 48/190 (25%), Positives = 57/190 (30%), Gaps = 43/190 (22%)
Query: 412 REPAPETPARPLALGPLPRPGLRSARPPRQCRGEHRLGPHAPMPSPRCPGEAQGVTDGRR 471
R P P +P + G PG+ + P GP P GV G
Sbjct: 119 RNGDPGIPGQPGSPGSPGPPGICESCPT---------GPQNYSPQYDSYDVKSGVAVGGL 169
Query: 472 ASPSAPGGDQDRVSTTPQPTAQPGSGAGPQRPGPTQKRGGRGVRVPEGSPARIAFSGRRG 531
A P G P + PGS P GP + G G P G P I SG G
Sbjct: 170 AGYPGPAGPPGPPGP-PGTSGHPGSPGSPGYQGPPGEPGQAGPSGPPGPPGAIGPSGPAG 228
Query: 532 GAKAQPMAEAESLGDRERRDGGGAAGGGAVAQLRAVGQGALCAAPRDSGPRVCATVESGG 591
+DG G G+ L P GP G
Sbjct: 229 ------------------KDGESGRPG-------RPGERGLPGPPGIKGP--------AG 255
Query: 592 IPRDPGGQGH 601
IP PG +GH
Sbjct: 256 IPGFPGMKGH 265
>gi|18105032 type X collagen alpha 1 precursor [Homo sapiens]
Length = 680
Score = 66.2 bits (160), Expect = 8e-11
Identities = 118/451 (26%), Positives = 151/451 (33%), Gaps = 62/451 (13%)
Query: 185 QGRPGLPTRTMPRDTGQPTRTML-------------WDTGQPCVLP--QGPAVTPPAFPG 229
QG PGLP P G+P L D G P LP +GP PP PG
Sbjct: 91 QGEPGLPGPPGPSAVGKPGVPGLPGKPGERGPYGPKGDVG-PAGLPGPRGPP-GPPGIPG 148
Query: 230 VQETLPSLPVAPGAPGQRGRPSPYSLRVRGPRQDLPHLDGLHGAHDHHGLGHASAQAAQQ 289
S+P PG G G P P +P ++G G + G +
Sbjct: 149 PAGI--SVPGKPGQQGPTGAPGPRGFPGEKGAPGVPGMNGQKGEMGYGAPGRPGERGLPG 206
Query: 290 PTRAVQPSLGIPHVVAEELEHSKPG--GGRRSRELRPRYRPRTPWLRTVCRTQSPGGGGG 347
P PS P V + E+ PG G + R P P Q P G G
Sbjct: 207 PQGPTGPSG--PPGVGKRGENGVPGQPGIKGDRGFPGEMGPIGP-----PGPQGPPGERG 259
Query: 348 QDPTAL-GAAALGTRP--PRRRGLPLLTDAPVPRRVRALVQLQLRLHVLGGEGDADLDAT 404
+ GAA +P P +GLP P + L + G G A L
Sbjct: 260 PEGIGKPGAAGAPGQPGIPGTKGLPGAPGIAGPPGPPGFGKPGLP-GLKGERGPAGLPGG 318
Query: 405 RQAACRDREPAPETPARPLALGPLPRPGLRSARPPRQCRGEHRL-------GPHAPMPSP 457
A + + P +P GP PG + P+ G H L GP P P
Sbjct: 319 PGA--KGEQGPAGLPGKPGLTGP---PGNMGPQGPKGIPGSHGLPGPKGETGPAGPAGYP 373
Query: 458 RCPGEAQGV-TDGRRASPSAPGGDQDRVST-TPQPTAQPGSGAGPQRPGPTQKRGGRGV- 514
GE +DG+ P PG D + + P P PG G P PGP G +G+
Sbjct: 374 GAKGERGSPGSDGKPGYPGKPGLDGPKGNPGLPGPKGDPGVGGPPGLPGPVGPAGAKGMP 433
Query: 515 -----RVPEGSPARIAFSGRRGGAKAQPMAEAESLGDRERRDGGGAAGGGAVAQLRAVGQ 569
P G+P G RG P+ G + G+ G A + G
Sbjct: 434 GHNGEAGPRGAP---GIPGTRG-----PIGPPGIPGFPGSKGDPGSPGPPGPAGIATKGL 485
Query: 570 GALCAAPRDSGPRVCATVESGGIPRDPGGQG 600
P GPR G+P PG G
Sbjct: 486 NGPTGPPGPPGPR--GHSGEPGLPGPPGPPG 514
Score = 40.4 bits (93), Expect = 0.005
Identities = 49/192 (25%), Positives = 62/192 (32%), Gaps = 26/192 (13%)
Query: 418 TPARPLALGPLPRPGLRSARPPRQCRGEHRLGPHAPMPSPRCPGEAQGVTDGRRASPSAP 477
TP P GP PG + PP G+ G P PG G+ P P
Sbjct: 61 TPGPPGPAGPRGHPG--PSGPP----GKPGYGSPGLQGEPGLPGPPGPSAVGKPGVPGLP 114
Query: 478 GGDQDRVSTTPQPTAQPGSGAGPQ-RPGPTQKRGGRGVRV--------PEGSPARIAFSG 528
G +R P+ P GP+ PGP G G+ V P G+P F G
Sbjct: 115 GKPGERGPYGPKGDVGPAGLPGPRGPPGPPGIPGPAGISVPGKPGQQGPTGAPGPRGFPG 174
Query: 529 RRGGAKAQPMAEAESLGDRERRDGGGAAGGGAVAQLRAVGQGALCAAPRDSGPRVCATVE 588
+G M + G G GA + G SGP
Sbjct: 175 EKGAPGVPGMNGQK-----------GEMGYGAPGRPGERGLPGPQGPTGPSGPPGVGKRG 223
Query: 589 SGGIPRDPGGQG 600
G+P PG +G
Sbjct: 224 ENGVPGQPGIKG 235
Score = 38.9 bits (89), Expect = 0.014
Identities = 81/307 (26%), Positives = 100/307 (32%), Gaps = 51/307 (16%)
Query: 238 PVAPGAPGQRGRPSPYSLRVRGPRQDLPHLDGLHGAHDHHGLGHASAQAAQQPTRAVQPS 297
P PG G RG P P S P P L G G G P+ +P
Sbjct: 62 PGPPGPAGPRGHPGP-SGPPGKPGYGSPGLQGEPGLPGPPG-----------PSAVGKPG 109
Query: 298 L-GIPHVVAEELEHSKPGGGRRSRELRPRYRPRTPWLRTVCRTQSPGGGGGQDPTALGAA 356
+ G+P E + G + PR P P + PG G Q PT
Sbjct: 110 VPGLPGKPGERGPYGPKGDVGPAGLPGPRGPPGPPGIPGPAGISVPGKPGQQGPTG---- 165
Query: 357 ALGTRPPRRRGLPLLTDAP-VPRRVRALVQLQLRLHVLGGEGDADLDATRQAACRDREPA 415
P RG P AP VP + G +G+ A + R P
Sbjct: 166 -----APGPRGFPGEKGAPGVP-------------GMNGQKGEMGYGAPGRPGERGL-PG 206
Query: 416 PETPARPLA------LGPLPRPGLRSARPPRQCRGEHRLGPHAPMPSPRCPGEAQGVTDG 469
P+ P P G PG + R GE +GP P PGE G
Sbjct: 207 PQGPTGPSGPPGVGKRGENGVPGQPGIKGDRGFPGE--MGPIGPPGPQGPPGERGPEGIG 264
Query: 470 RRASPSAPGGDQDRVSTTPQPTAQPGSGAGPQRP---GPTQKRGGRGVRVPEGSPARIAF 526
+ + APG Q + T PG AGP P G G +G R P G P
Sbjct: 265 KPGAAGAPG--QPGIPGTKGLPGAPGI-AGPPGPPGFGKPGLPGLKGERGPAGLPGGPGA 321
Query: 527 SGRRGGA 533
G +G A
Sbjct: 322 KGEQGPA 328
>gi|89142737 alpha 3 type IV collagen isoform 5 precursor [Homo
sapiens]
Length = 1424
Score = 64.7 bits (156), Expect = 2e-10
Identities = 122/470 (25%), Positives = 158/470 (33%), Gaps = 88/470 (18%)
Query: 166 PGPIQGGGNWELFPRKQCSQGRPGLPTRTMPRDTGQPTRTMLWDTGQPCVLPQGPAVT-- 223
PG ++G W + +GRPG P G L G P P GP
Sbjct: 388 PG-LRGAPGWPGLKGSKGERGRPGKDAMGTPGSPGCAGSPGL--PGSPG--PPGPPGDIV 442
Query: 224 ----PPAFPGVQETLPSLPVAPGAPGQRGRPS------PYSLRVRGPRQDLPHLDGLHGA 273
PP G+ L S P PG G +G P PY + GP P L GL G
Sbjct: 443 FRKGPPGDHGLPGYLGS-PGIPGVDGPKGEPGLLCTQCPY---IPGP----PGLPGLPGL 494
Query: 274 HDHHGLGHASAQAAQQPTRAVQPSLGIPHVVAEELEHSKPG-GGRRSRELRPRYRPRTPW 332
H G+ A + + + G+P PG G + L+P + P
Sbjct: 495 HGVKGIPGRQGAAGLKGSPGSPGNTGLPGFPGFPGAQGDPGLKGEKGETLQPEGQVGVPG 554
Query: 333 LRTVCRTQSPGGGGGQDPTALGAAALGTRPPRRRGLPLLTDAPVPRRVRALVQLQLRLHV 392
DP G P R+GL + P V+ L + L +
Sbjct: 555 ----------------DPGLRGQ-------PGRKGLDGIPGTP---GVKGLPGPKGELAL 588
Query: 393 LGGEGDADLDATRQAACRDREPAPETPARPLALGPLPRPGLRSAR-------PPRQCRGE 445
G +GD + P P PA P GP PGL+ + PP +
Sbjct: 589 SGEKGDQGPPGDPGSP---GSPGPAGPAGPPGYGPQGEPGLQGTQGVPGAPGPPGEAGPR 645
Query: 446 HRLGPHAPMPSPRCPGEAQGVTDGRRASPSAPG-----GDQDRVSTTPQPTAQPG-SGAG 499
L P+P P P G G + P PG GD P P +PG G G
Sbjct: 646 GELSVSTPVPGPPGPPGPPG-HPGPQGPPGIPGSLGKCGDPG----LPGPDGEPGIPGIG 700
Query: 500 -PQRPGPTQKRGGRGVRVPEGSPARIAFSGRRG-----GAKAQPMAEAESLGDRERRDGG 553
P PGP +G G + G P ++ G G GAK +P A A G G
Sbjct: 701 FPGPPGPKGDQGFPGTKGSLGCPGKMGEPGLPGKPGLPGAKGEP-AVAMPGGPGTPGFPG 759
Query: 554 GAAGGGAVAQLRAVGQGALCAAPRD---SGPRVCATVESGGIPRDPGGQG 600
G ++ G L P + GPR G P PG QG
Sbjct: 760 ERGNSGEHGEIGLPGLPGLPGTPGNEGLDGPR-----GDPGQPGPPGEQG 804
Score = 45.4 bits (106), Expect = 1e-04
Identities = 98/389 (25%), Positives = 125/389 (32%), Gaps = 70/389 (17%)
Query: 182 QCSQGRPGLPTRTMPRDTGQPTRTMLWDTGQPCVLPQGPAVTPPAFPGVQETL--PSLPV 239
Q +G PG T P G PT D G P + + + P PG P
Sbjct: 1050 QGDKGEPGYSEGTRPGPPG-PTG----DPGLPGDMGKKGEMGQPGPPGHLGPAGPEGAPG 1104
Query: 240 APGAPGQRGRPSPYS-LRVRGPRQDLPHLDGLHGAHDHHGLGHASAQAAQQPTRAVQPSL 298
+PG+PG G+P P+ L +G + L G G GL R Q
Sbjct: 1105 SPGSPGLPGKPGPHGDLGFKG----IKGLLGPPGIRGPPGLPGFPGSPGPMGIRGDQGRD 1160
Query: 299 GIPHVVAEELE----------HSKPGG-GRRSRELRPRYRPRTPWLRTVCRTQSPGGGGG 347
GIP E+ E PG G + P + P P + P G G
Sbjct: 1161 GIPGPAGEKGETGLLRAPPGPRGNPGAQGAKGDRGAPGF-PGLPGRKGAMGDAGPRGPTG 1219
Query: 348 QD--------PTALGAAALGTR-PPRRRGLPLLTDAPVPRRVRALVQLQLRLHVLGGEGD 398
+ P A+ G R PP RG P P P HV+G +GD
Sbjct: 1220 IEGFPGPPGLPGAIIPGQTGNRGPPGSRGSPGAPGPPGPPGS----------HVIGIKGD 1269
Query: 399 ADL----------DATRQAACRDREPAPETPARPLALGPLPRPGLRSARPPRQCRGEH-- 446
R AP TP P GP PG + + +G
Sbjct: 1270 KGSMGHPGPKGPPGTAGDMGPPGRLGAPGTPGLP---GPRGDPGFQGFPGVKGEKGNPGF 1326
Query: 447 --RLGPHAPMPSPRCPGEAQGVTDGRRASPSAPGGDQDRVSTTPQPTAQPGSGAGPQRPG 504
+GP P+ P+ P +G G S PG +P P PG PG
Sbjct: 1327 LGSIGPPGPI-GPKGPPGVRG-DPGTLKIISLPG--------SPGPPGTPGEPGMQGEPG 1376
Query: 505 PTQKRGGRGVRVPEGSPARIAFSGRRGGA 533
P G G P G P + G G A
Sbjct: 1377 PPGPPGNLGPCGPRGKPGKDGKPGTPGPA 1405
Score = 42.7 bits (99), Expect = 0.001
Identities = 115/468 (24%), Positives = 150/468 (32%), Gaps = 83/468 (17%)
Query: 166 PGPIQGGGNWELFPRKQCSQGRPG-LPTRTMPRDTGQPTRTMLWDTGQPCV-LPQGPAVT 223
PGP G+ + FP + S G PG + +P G P G+P V +P GP
Sbjct: 702 PGPPGPKGD-QGFPGTKGSLGCPGKMGEPGLPGKPGLPGAK-----GEPAVAMPGGPGT- 754
Query: 224 PPAFPGVQET--------LPSLPVAPGAPGQRGRPSPYSLRVRG-PRQDLPH-------- 266
P FPG + LP LP PG PG G P RG P Q P
Sbjct: 755 -PGFPGERGNSGEHGEIGLPGLPGLPGTPGNEGLDGP-----RGDPGQPGPPGEQGPPGR 808
Query: 267 -LDGLHGAHDHHGLGHASAQAAQQPTRAVQPSLGIPHVVAEEL--EHSKPGGGRRSRELR 323
++G GA GL Q ++ + GIP + E PG E+
Sbjct: 809 CIEGPRGAQGLPGLNGLKGQQGRRGKTGPKGDPGIPGLDRSGFPGETGSPGIPGHQGEMG 868
Query: 324 P---RYRPRTPWLRTVCRTQSPGGGGGQDPTALGAAALGTRPPRRRGLPLLTDAPVPRRV 380
P R P P + PG G A PP G P +P
Sbjct: 869 PLGQRGYPGNPGI-----LGPPGEDGVIGMMGFPGAIGPPGPPGNPGTPGQRGSP----- 918
Query: 381 RALVQLQLRLHVLGGEGDADLDATRQAACRDREPAPETPARPLALGPLPRPGLRSARPPR 440
+ G +G + P P + +G PGL+
Sbjct: 919 ----------GIPGVKGQRGTPGAKGEQGDKGNPGPSEISH--VIGDKGEPGLKGFAGNP 966
Query: 441 QCRGEHRLGPHAPMPSPRCPGEAQGVTDGRRASPSAPGGDQDRVSTTPQPTAQ--PGSGA 498
+G + P PG A P P GD +P + PGS
Sbjct: 967 GEKGNRGV--------PGMPGLKGLKGLPGPAGPPGPRGDLGSTGNPGEPGLRGIPGSMG 1018
Query: 499 GPQRPGPTQKRGGRGVRVPEGSPARIAFSGRRGGAKAQPMAEAESLGDRERRDG--GGAA 556
PG KRG G G P G +G K +P S G R G G
Sbjct: 1019 NMGMPGSKGKRGTLGFPGRAGRPGLPGIHGLQGD-KGEP---GYSEGTRPGPPGPTGDPG 1074
Query: 557 GGGAVAQLRAVGQ----GALCAAPRDSGPRVCATVESGGIPRDPGGQG 600
G + + +GQ G L A + P + S G+P PG G
Sbjct: 1075 LPGDMGKKGEMGQPGPPGHLGPAGPEGAP---GSPGSPGLPGKPGPHG 1119
Score = 38.9 bits (89), Expect = 0.014
Identities = 115/496 (23%), Positives = 145/496 (29%), Gaps = 126/496 (25%)
Query: 186 GRPGLPTRTMPRDTGQPT----RTMLWDTGQPCVLPQGPAVTPP----------AFPGVQ 231
G PGL P +TG P + + GQ P P + P FPG
Sbjct: 842 GIPGLDRSGFPGETGSPGIPGHQGEMGPLGQRGY-PGNPGILGPPGEDGVIGMMGFPGAI 900
Query: 232 ETLPSLPVAPGAPGQRGRPSPYSLRVRGPRQDLPHLDGLHGAHDHHGLGHASAQAAQQPT 291
P P PG PGQRG P +P + G G G +Q
Sbjct: 901 GP-PGPPGNPGTPGQRGSPG------------IPGVKGQRGTPGAKG---------EQGD 938
Query: 292 RAVQPSLGIPHVVAEELEHSKPGGGRRSRELRPRYRPRTPWLRTVCRTQSPGGGGGQDPT 351
+ I HV+ ++ E G E R P P L+ + P G G P
Sbjct: 939 KGNPGPSEISHVIGDKGEPGLKGFAGNPGEKGNRGVPGMPGLKGLKGLPGPAGPPG--PR 996
Query: 352 ALGAAALGTRPPRRRGLPLLTD---APVPRRVRALVQLQLRLHVLGGEGDADLDATRQAA 408
+ P RG+P P + R + R G G L +
Sbjct: 997 GDLGSTGNPGEPGLRGIPGSMGNMGMPGSKGKRGTLGFPGRAGRPGLPGIHGLQGDKG-- 1054
Query: 409 CRDREPAPETPARPLALGPLPRPGLRSARPPRQCRGEH----RLGPHAPMPSPRCPGEA- 463
EP RP GP PGL + G+ LGP P +P PG
Sbjct: 1055 ----EPGYSEGTRPGPPGPTGDPGLPGDMGKKGEMGQPGPPGHLGPAGPEGAPGSPGSPG 1110
Query: 464 -------------QGVTD-----GRRASPSAPG-----------GDQDR----------- 483
+G+ G R P PG GDQ R
Sbjct: 1111 LPGKPGPHGDLGFKGIKGLLGPPGIRGPPGLPGFPGSPGPMGIRGDQGRDGIPGPAGEKG 1170
Query: 484 ----VSTTPQPTAQPGS-GA-----GPQRPGPTQKRGGRGVRVPEGSPARIAFSGRRGGA 533
+ P P PG+ GA P PG ++G G P G F G G
Sbjct: 1171 ETGLLRAPPGPRGNPGAQGAKGDRGAPGFPGLPGRKGAMGDAGPRGPTGIEGFPGPPGLP 1230
Query: 534 KAQPMAEAESLGDRERRDGGGAAGGGAVAQLRAVGQGALCAAPRDSGPRVCATVESGGIP 593
A + + G R GA G P G V GI
Sbjct: 1231 GAIIPGQTGNRGPPGSRGSPGAPG-----------------PPGPPGSHVI------GIK 1267
Query: 594 RDPGGQGHTLPENTWG 609
D G GH P+ G
Sbjct: 1268 GDKGSMGHPGPKGPPG 1283
Score = 35.8 bits (81), Expect = 0.12
Identities = 99/406 (24%), Positives = 127/406 (31%), Gaps = 83/406 (20%)
Query: 217 PQGPAVTPPAFPGVQET--------LPSLPVAPGAPGQRGRPSPYSLRVRGPRQDLPHLD 268
PQGP P PG+ + LP +PG PG G PY L +P
Sbjct: 74 PQGPKGFP-GLPGLTGSKGVRGISGLPGFSGSPGLPGTPGNTGPYGL------VGVPGCS 126
Query: 269 GLHGAHDHHGLGHASAQAAQQPTRAVQPSLGIPHVVAEELEHSKPGGGRRSRELRPRYRP 328
G G GL ++ G P E++E G P+ P
Sbjct: 127 GSKGEQGFPGLPGTLGYPGIPGAAGLKGQKGAP-AKEEDIELDAKGDPGLPGAPGPQGLP 185
Query: 329 RTPWLRTVCRTQSPGGGGGQDPTALGA--AALGTRPPR------------RRGLPLLTDA 374
P PG G P A+G R P+ RG+ LT
Sbjct: 186 GPPGF--------PGPVGPPGPPGFFGFPGAMGPRGPKGHMGERVIGHKGERGVKGLTGP 237
Query: 375 PVPRRVRALVQLQLRLHVLGGEGDADLDATRQAACRDREPAPETPARPLALGPLPRPGLR 434
P P + + + G + DL + EP P GP PG
Sbjct: 238 PGPPGT-------VIVTLTGPDNRTDLKGEKGDKGAMGEPGPP--------GPSGLPG-E 281
Query: 435 SARPPRQCRGEHRL-GPHAPMPSPRCPGEAQGVTDGRRASPSAPGGDQDRVSTTPQPTAQ 493
S + G+ L G P PG ++GV G R P G +D +
Sbjct: 282 SYGSEKGAPGDPGLQGKPGKDGVPGFPG-SEGV-KGNRGFPGLMG--EDGIKGQKGDIGP 337
Query: 494 PGSGAGPQR-------------PGPTQKRGGRGVRVPEGSPARIAFSG-RRGGAKAQP-- 537
PG GP PGP RG RG + P G P G R G + P
Sbjct: 338 PGF-RGPTEYYDTYQEKGDEGTPGPPGPRGARGPQGPSGPPGVPGSPGSSRPGLRGAPGW 396
Query: 538 MAEAESLGDRER--RDGGGAAGGGAVAQLRAVGQGALCAAPRDSGP 581
S G+R R +D G G A G L +P GP
Sbjct: 397 PGLKGSKGERGRPGKDAMGTPGSPGCA-----GSPGLPGSPGPPGP 437
>gi|89142735 alpha 3 type IV collagen isoform 4 precursor [Homo
sapiens]
Length = 1494
Score = 64.7 bits (156), Expect = 2e-10
Identities = 122/470 (25%), Positives = 158/470 (33%), Gaps = 88/470 (18%)
Query: 166 PGPIQGGGNWELFPRKQCSQGRPGLPTRTMPRDTGQPTRTMLWDTGQPCVLPQGPAVT-- 223
PG ++G W + +GRPG P G L G P P GP
Sbjct: 388 PG-LRGAPGWPGLKGSKGERGRPGKDAMGTPGSPGCAGSPGL--PGSPG--PPGPPGDIV 442
Query: 224 ----PPAFPGVQETLPSLPVAPGAPGQRGRPS------PYSLRVRGPRQDLPHLDGLHGA 273
PP G+ L S P PG G +G P PY + GP P L GL G
Sbjct: 443 FRKGPPGDHGLPGYLGS-PGIPGVDGPKGEPGLLCTQCPY---IPGP----PGLPGLPGL 494
Query: 274 HDHHGLGHASAQAAQQPTRAVQPSLGIPHVVAEELEHSKPG-GGRRSRELRPRYRPRTPW 332
H G+ A + + + G+P PG G + L+P + P
Sbjct: 495 HGVKGIPGRQGAAGLKGSPGSPGNTGLPGFPGFPGAQGDPGLKGEKGETLQPEGQVGVPG 554
Query: 333 LRTVCRTQSPGGGGGQDPTALGAAALGTRPPRRRGLPLLTDAPVPRRVRALVQLQLRLHV 392
DP G P R+GL + P V+ L + L +
Sbjct: 555 ----------------DPGLRGQ-------PGRKGLDGIPGTP---GVKGLPGPKGELAL 588
Query: 393 LGGEGDADLDATRQAACRDREPAPETPARPLALGPLPRPGLRSAR-------PPRQCRGE 445
G +GD + P P PA P GP PGL+ + PP +
Sbjct: 589 SGEKGDQGPPGDPGSP---GSPGPAGPAGPPGYGPQGEPGLQGTQGVPGAPGPPGEAGPR 645
Query: 446 HRLGPHAPMPSPRCPGEAQGVTDGRRASPSAPG-----GDQDRVSTTPQPTAQPG-SGAG 499
L P+P P P G G + P PG GD P P +PG G G
Sbjct: 646 GELSVSTPVPGPPGPPGPPG-HPGPQGPPGIPGSLGKCGDPG----LPGPDGEPGIPGIG 700
Query: 500 -PQRPGPTQKRGGRGVRVPEGSPARIAFSGRRG-----GAKAQPMAEAESLGDRERRDGG 553
P PGP +G G + G P ++ G G GAK +P A A G G
Sbjct: 701 FPGPPGPKGDQGFPGTKGSLGCPGKMGEPGLPGKPGLPGAKGEP-AVAMPGGPGTPGFPG 759
Query: 554 GAAGGGAVAQLRAVGQGALCAAPRD---SGPRVCATVESGGIPRDPGGQG 600
G ++ G L P + GPR G P PG QG
Sbjct: 760 ERGNSGEHGEIGLPGLPGLPGTPGNEGLDGPR-----GDPGQPGPPGEQG 804
Score = 52.8 bits (125), Expect = 9e-07
Identities = 109/450 (24%), Positives = 140/450 (31%), Gaps = 81/450 (18%)
Query: 186 GRPGLPTRTMPRDTGQPT----RTMLWDTGQPCVLPQGPAVTPP----------AFPGVQ 231
G PGL P +TG P + + GQ P P + P FPG
Sbjct: 842 GIPGLDRSGFPGETGSPGIPGHQGEMGPLGQRGY-PGNPGILGPPGEDGVIGMMGFPGAI 900
Query: 232 ETLPSLPVAPGAPGQRGRPSPYSLRVRGPRQDLPHLDGLHGAHDHHGLGHASAQAAQQPT 291
P P PG PGQRG P +P + G G G +Q
Sbjct: 901 GP-PGPPGNPGTPGQRGSPG------------IPGVKGQRGTPGAKG---------EQGD 938
Query: 292 RAVQPSLGIPHVVAEELEHSKPGGGRRSRELRPRYRPRTPWLRTVCRTQSPGGGGGQDPT 351
+ I HV+ ++ E G E R P P L+ + P G G P
Sbjct: 939 KGNPGPSEISHVIGDKGEPGLKGFAGNPGEKGNRGVPGMPGLKGLKGLPGPAGPPG--PR 996
Query: 352 ALGAAALGTRPPRRRGLPLLTD---APVPRRVRALVQLQLRLHVLGGEGDADLDATRQAA 408
+ P RG+P P + R + R G G L +
Sbjct: 997 GDLGSTGNPGEPGLRGIPGSMGNMGMPGSKGKRGTLGFPGRAGRPGLPGIHGLQGDKG-- 1054
Query: 409 CRDREPAPETPARPLALGPLPRPGLRSARPPRQCRGEH----RLGPHAPMPSPRCPGEAQ 464
EP RP GP PGL + G+ LGP P +P PG
Sbjct: 1055 ----EPGYSEGTRPGPPGPTGDPGLPGDMGKKGEMGQPGPPGHLGPAGPEGAPGSPGSP- 1109
Query: 465 GVTDGRRASPSAPGGDQDR-------VSTTPQPTAQPGSGAGPQRPGPTQKRGGRGVRVP 517
P PG D + P PG P PGP G RG +
Sbjct: 1110 -------GLPGKPGPHGDLGFKGIKGLLGPPGIRGPPGLPGFPGSPGP---MGIRGDQGR 1159
Query: 518 EGSPARIAFSGRRGGAKAQPMAEAESLGDRERRDGGGAAGGGAVAQLRAVGQGALCAAPR 577
+G P G G +A P + D G G + A+G
Sbjct: 1160 DGIPGPAGEKGETGLLRAPPGPRGNPGAQGAKGDRGAPGFPGLPGRKGAMG--------- 1210
Query: 578 DSGPRVCATVESGGIPRDPGGQGHTLPENT 607
D+GPR +E G P PG G +P T
Sbjct: 1211 DAGPRGPTGIE--GFPGPPGLPGAIIPGQT 1238
Score = 46.6 bits (109), Expect = 7e-05
Identities = 99/408 (24%), Positives = 133/408 (32%), Gaps = 82/408 (20%)
Query: 182 QCSQGRPGLPTRTMPRDTGQPTRTMLWDTGQPCVLPQGPAVTPPAFPGVQETL--PSLPV 239
Q +G PG T P G PT D G P + + + P PG P
Sbjct: 1050 QGDKGEPGYSEGTRPGPPG-PTG----DPGLPGDMGKKGEMGQPGPPGHLGPAGPEGAPG 1104
Query: 240 APGAPGQRGRPSPYS-LRVRGPRQDLPHLDGLHGAHDHHGLGHASAQAAQQPTRAVQPSL 298
+PG+PG G+P P+ L +G + L G G GL R Q
Sbjct: 1105 SPGSPGLPGKPGPHGDLGFKG----IKGLLGPPGIRGPPGLPGFPGSPGPMGIRGDQGRD 1160
Query: 299 GIPHVVAEELE----------HSKPGG-GRRSRELRPRYRPRTPWLRTVCRTQSPGGGGG 347
GIP E+ E PG G + P + P P + P G G
Sbjct: 1161 GIPGPAGEKGETGLLRAPPGPRGNPGAQGAKGDRGAPGF-PGLPGRKGAMGDAGPRGPTG 1219
Query: 348 QD--------PTALGAAALGTR-PPRRRGLPLLTDAPVPRRVRALVQLQLRLHVLGGEGD 398
+ P A+ G R PP RG P P P HV+G +GD
Sbjct: 1220 IEGFPGPPGLPGAIIPGQTGNRGPPGSRGSPGAPGPPGPPGS----------HVIGIKGD 1269
Query: 399 ADL----------DATRQAACRDREPAPETPARPLALGPLPRPGLRSARPPRQCRGEH-- 446
R AP TP P GP PG + + +G
Sbjct: 1270 KGSMGHPGPKGPPGTAGDMGPPGRLGAPGTPGLP---GPRGDPGFQGFPGVKGEKGNPGF 1326
Query: 447 --RLGPHAPMPSPRCPGEAQGV-----------TDGRRASPSAPGGDQDRVSTTPQ---- 489
+GP P+ P+ P +G + G +P PG + P
Sbjct: 1327 LGSIGPPGPI-GPKGPPGVRGDPGTLKIISLPGSPGPPGTPGEPGMQGEPGPPGPPGNLG 1385
Query: 490 ---PTAQPGSGAGPQRPGPTQKRGGRGVR---VPEGSPARIAFSGRRG 531
P +PG P PGP ++G +G + P GS G+RG
Sbjct: 1386 PCGPRGKPGKDGKPGTPGPAGEKGNKGSKGEPGPAGSDGLPGLKGKRG 1433
Score = 42.7 bits (99), Expect = 0.001
Identities = 115/468 (24%), Positives = 150/468 (32%), Gaps = 83/468 (17%)
Query: 166 PGPIQGGGNWELFPRKQCSQGRPG-LPTRTMPRDTGQPTRTMLWDTGQPCV-LPQGPAVT 223
PGP G+ + FP + S G PG + +P G P G+P V +P GP
Sbjct: 702 PGPPGPKGD-QGFPGTKGSLGCPGKMGEPGLPGKPGLPGAK-----GEPAVAMPGGPGT- 754
Query: 224 PPAFPGVQET--------LPSLPVAPGAPGQRGRPSPYSLRVRG-PRQDLPH-------- 266
P FPG + LP LP PG PG G P RG P Q P
Sbjct: 755 -PGFPGERGNSGEHGEIGLPGLPGLPGTPGNEGLDGP-----RGDPGQPGPPGEQGPPGR 808
Query: 267 -LDGLHGAHDHHGLGHASAQAAQQPTRAVQPSLGIPHVVAEEL--EHSKPGGGRRSRELR 323
++G GA GL Q ++ + GIP + E PG E+
Sbjct: 809 CIEGPRGAQGLPGLNGLKGQQGRRGKTGPKGDPGIPGLDRSGFPGETGSPGIPGHQGEMG 868
Query: 324 P---RYRPRTPWLRTVCRTQSPGGGGGQDPTALGAAALGTRPPRRRGLPLLTDAPVPRRV 380
P R P P + PG G A PP G P +P
Sbjct: 869 PLGQRGYPGNPGI-----LGPPGEDGVIGMMGFPGAIGPPGPPGNPGTPGQRGSP----- 918
Query: 381 RALVQLQLRLHVLGGEGDADLDATRQAACRDREPAPETPARPLALGPLPRPGLRSARPPR 440
+ G +G + P P + +G PGL+
Sbjct: 919 ----------GIPGVKGQRGTPGAKGEQGDKGNPGPSEISH--VIGDKGEPGLKGFAGNP 966
Query: 441 QCRGEHRLGPHAPMPSPRCPGEAQGVTDGRRASPSAPGGDQDRVSTTPQPTAQ--PGSGA 498
+G + P PG A P P GD +P + PGS
Sbjct: 967 GEKGNRGV--------PGMPGLKGLKGLPGPAGPPGPRGDLGSTGNPGEPGLRGIPGSMG 1018
Query: 499 GPQRPGPTQKRGGRGVRVPEGSPARIAFSGRRGGAKAQPMAEAESLGDRERRDG--GGAA 556
PG KRG G G P G +G K +P S G R G G
Sbjct: 1019 NMGMPGSKGKRGTLGFPGRAGRPGLPGIHGLQGD-KGEP---GYSEGTRPGPPGPTGDPG 1074
Query: 557 GGGAVAQLRAVGQ----GALCAAPRDSGPRVCATVESGGIPRDPGGQG 600
G + + +GQ G L A + P + S G+P PG G
Sbjct: 1075 LPGDMGKKGEMGQPGPPGHLGPAGPEGAP---GSPGSPGLPGKPGPHG 1119
Score = 35.8 bits (81), Expect = 0.12
Identities = 99/406 (24%), Positives = 127/406 (31%), Gaps = 83/406 (20%)
Query: 217 PQGPAVTPPAFPGVQET--------LPSLPVAPGAPGQRGRPSPYSLRVRGPRQDLPHLD 268
PQGP P PG+ + LP +PG PG G PY L +P
Sbjct: 74 PQGPKGFP-GLPGLTGSKGVRGISGLPGFSGSPGLPGTPGNTGPYGL------VGVPGCS 126
Query: 269 GLHGAHDHHGLGHASAQAAQQPTRAVQPSLGIPHVVAEELEHSKPGGGRRSRELRPRYRP 328
G G GL ++ G P E++E G P+ P
Sbjct: 127 GSKGEQGFPGLPGTLGYPGIPGAAGLKGQKGAP-AKEEDIELDAKGDPGLPGAPGPQGLP 185
Query: 329 RTPWLRTVCRTQSPGGGGGQDPTALGA--AALGTRPPR------------RRGLPLLTDA 374
P PG G P A+G R P+ RG+ LT
Sbjct: 186 GPPGF--------PGPVGPPGPPGFFGFPGAMGPRGPKGHMGERVIGHKGERGVKGLTGP 237
Query: 375 PVPRRVRALVQLQLRLHVLGGEGDADLDATRQAACRDREPAPETPARPLALGPLPRPGLR 434
P P + + + G + DL + EP P GP PG
Sbjct: 238 PGPPGT-------VIVTLTGPDNRTDLKGEKGDKGAMGEPGPP--------GPSGLPG-E 281
Query: 435 SARPPRQCRGEHRL-GPHAPMPSPRCPGEAQGVTDGRRASPSAPGGDQDRVSTTPQPTAQ 493
S + G+ L G P PG ++GV G R P G +D +
Sbjct: 282 SYGSEKGAPGDPGLQGKPGKDGVPGFPG-SEGV-KGNRGFPGLMG--EDGIKGQKGDIGP 337
Query: 494 PGSGAGPQR-------------PGPTQKRGGRGVRVPEGSPARIAFSG-RRGGAKAQP-- 537
PG GP PGP RG RG + P G P G R G + P
Sbjct: 338 PGF-RGPTEYYDTYQEKGDEGTPGPPGPRGARGPQGPSGPPGVPGSPGSSRPGLRGAPGW 396
Query: 538 MAEAESLGDRER--RDGGGAAGGGAVAQLRAVGQGALCAAPRDSGP 581
S G+R R +D G G A G L +P GP
Sbjct: 397 PGLKGSKGERGRPGKDAMGTPGSPGCA-----GSPGLPGSPGPPGP 437
>gi|89142733 alpha 3 type IV collagen isoform 2 precursor [Homo
sapiens]
Length = 1637
Score = 64.7 bits (156), Expect = 2e-10
Identities = 122/470 (25%), Positives = 158/470 (33%), Gaps = 88/470 (18%)
Query: 166 PGPIQGGGNWELFPRKQCSQGRPGLPTRTMPRDTGQPTRTMLWDTGQPCVLPQGPAVT-- 223
PG ++G W + +GRPG P G L G P P GP
Sbjct: 388 PG-LRGAPGWPGLKGSKGERGRPGKDAMGTPGSPGCAGSPGL--PGSPG--PPGPPGDIV 442
Query: 224 ----PPAFPGVQETLPSLPVAPGAPGQRGRPS------PYSLRVRGPRQDLPHLDGLHGA 273
PP G+ L S P PG G +G P PY + GP P L GL G
Sbjct: 443 FRKGPPGDHGLPGYLGS-PGIPGVDGPKGEPGLLCTQCPY---IPGP----PGLPGLPGL 494
Query: 274 HDHHGLGHASAQAAQQPTRAVQPSLGIPHVVAEELEHSKPG-GGRRSRELRPRYRPRTPW 332
H G+ A + + + G+P PG G + L+P + P
Sbjct: 495 HGVKGIPGRQGAAGLKGSPGSPGNTGLPGFPGFPGAQGDPGLKGEKGETLQPEGQVGVPG 554
Query: 333 LRTVCRTQSPGGGGGQDPTALGAAALGTRPPRRRGLPLLTDAPVPRRVRALVQLQLRLHV 392
DP G P R+GL + P V+ L + L +
Sbjct: 555 ----------------DPGLRGQ-------PGRKGLDGIPGTP---GVKGLPGPKGELAL 588
Query: 393 LGGEGDADLDATRQAACRDREPAPETPARPLALGPLPRPGLRSAR-------PPRQCRGE 445
G +GD + P P PA P GP PGL+ + PP +
Sbjct: 589 SGEKGDQGPPGDPGSP---GSPGPAGPAGPPGYGPQGEPGLQGTQGVPGAPGPPGEAGPR 645
Query: 446 HRLGPHAPMPSPRCPGEAQGVTDGRRASPSAPG-----GDQDRVSTTPQPTAQPG-SGAG 499
L P+P P P G G + P PG GD P P +PG G G
Sbjct: 646 GELSVSTPVPGPPGPPGPPG-HPGPQGPPGIPGSLGKCGDPG----LPGPDGEPGIPGIG 700
Query: 500 -PQRPGPTQKRGGRGVRVPEGSPARIAFSGRRG-----GAKAQPMAEAESLGDRERRDGG 553
P PGP +G G + G P ++ G G GAK +P A A G G
Sbjct: 701 FPGPPGPKGDQGFPGTKGSLGCPGKMGEPGLPGKPGLPGAKGEP-AVAMPGGPGTPGFPG 759
Query: 554 GAAGGGAVAQLRAVGQGALCAAPRD---SGPRVCATVESGGIPRDPGGQG 600
G ++ G L P + GPR G P PG QG
Sbjct: 760 ERGNSGEHGEIGLPGLPGLPGTPGNEGLDGPR-----GDPGQPGPPGEQG 804
Score = 52.8 bits (125), Expect = 9e-07
Identities = 109/450 (24%), Positives = 140/450 (31%), Gaps = 81/450 (18%)
Query: 186 GRPGLPTRTMPRDTGQPT----RTMLWDTGQPCVLPQGPAVTPP----------AFPGVQ 231
G PGL P +TG P + + GQ P P + P FPG
Sbjct: 842 GIPGLDRSGFPGETGSPGIPGHQGEMGPLGQRGY-PGNPGILGPPGEDGVIGMMGFPGAI 900
Query: 232 ETLPSLPVAPGAPGQRGRPSPYSLRVRGPRQDLPHLDGLHGAHDHHGLGHASAQAAQQPT 291
P P PG PGQRG P +P + G G G +Q
Sbjct: 901 GP-PGPPGNPGTPGQRGSPG------------IPGVKGQRGTPGAKG---------EQGD 938
Query: 292 RAVQPSLGIPHVVAEELEHSKPGGGRRSRELRPRYRPRTPWLRTVCRTQSPGGGGGQDPT 351
+ I HV+ ++ E G E R P P L+ + P G G P
Sbjct: 939 KGNPGPSEISHVIGDKGEPGLKGFAGNPGEKGNRGVPGMPGLKGLKGLPGPAGPPG--PR 996
Query: 352 ALGAAALGTRPPRRRGLPLLTD---APVPRRVRALVQLQLRLHVLGGEGDADLDATRQAA 408
+ P RG+P P + R + R G G L +
Sbjct: 997 GDLGSTGNPGEPGLRGIPGSMGNMGMPGSKGKRGTLGFPGRAGRPGLPGIHGLQGDKG-- 1054
Query: 409 CRDREPAPETPARPLALGPLPRPGLRSARPPRQCRGEH----RLGPHAPMPSPRCPGEAQ 464
EP RP GP PGL + G+ LGP P +P PG
Sbjct: 1055 ----EPGYSEGTRPGPPGPTGDPGLPGDMGKKGEMGQPGPPGHLGPAGPEGAPGSPGSP- 1109
Query: 465 GVTDGRRASPSAPGGDQDR-------VSTTPQPTAQPGSGAGPQRPGPTQKRGGRGVRVP 517
P PG D + P PG P PGP G RG +
Sbjct: 1110 -------GLPGKPGPHGDLGFKGIKGLLGPPGIRGPPGLPGFPGSPGP---MGIRGDQGR 1159
Query: 518 EGSPARIAFSGRRGGAKAQPMAEAESLGDRERRDGGGAAGGGAVAQLRAVGQGALCAAPR 577
+G P G G +A P + D G G + A+G
Sbjct: 1160 DGIPGPAGEKGETGLLRAPPGPRGNPGAQGAKGDRGAPGFPGLPGRKGAMG--------- 1210
Query: 578 DSGPRVCATVESGGIPRDPGGQGHTLPENT 607
D+GPR +E G P PG G +P T
Sbjct: 1211 DAGPRGPTGIE--GFPGPPGLPGAIIPGQT 1238
Score = 46.6 bits (109), Expect = 7e-05
Identities = 99/408 (24%), Positives = 133/408 (32%), Gaps = 82/408 (20%)
Query: 182 QCSQGRPGLPTRTMPRDTGQPTRTMLWDTGQPCVLPQGPAVTPPAFPGVQETL--PSLPV 239
Q +G PG T P G PT D G P + + + P PG P
Sbjct: 1050 QGDKGEPGYSEGTRPGPPG-PTG----DPGLPGDMGKKGEMGQPGPPGHLGPAGPEGAPG 1104
Query: 240 APGAPGQRGRPSPYS-LRVRGPRQDLPHLDGLHGAHDHHGLGHASAQAAQQPTRAVQPSL 298
+PG+PG G+P P+ L +G + L G G GL R Q
Sbjct: 1105 SPGSPGLPGKPGPHGDLGFKG----IKGLLGPPGIRGPPGLPGFPGSPGPMGIRGDQGRD 1160
Query: 299 GIPHVVAEELE----------HSKPGG-GRRSRELRPRYRPRTPWLRTVCRTQSPGGGGG 347
GIP E+ E PG G + P + P P + P G G
Sbjct: 1161 GIPGPAGEKGETGLLRAPPGPRGNPGAQGAKGDRGAPGF-PGLPGRKGAMGDAGPRGPTG 1219
Query: 348 QD--------PTALGAAALGTR-PPRRRGLPLLTDAPVPRRVRALVQLQLRLHVLGGEGD 398
+ P A+ G R PP RG P P P HV+G +GD
Sbjct: 1220 IEGFPGPPGLPGAIIPGQTGNRGPPGSRGSPGAPGPPGPPGS----------HVIGIKGD 1269
Query: 399 ADL----------DATRQAACRDREPAPETPARPLALGPLPRPGLRSARPPRQCRGEH-- 446
R AP TP P GP PG + + +G
Sbjct: 1270 KGSMGHPGPKGPPGTAGDMGPPGRLGAPGTPGLP---GPRGDPGFQGFPGVKGEKGNPGF 1326
Query: 447 --RLGPHAPMPSPRCPGEAQGV-----------TDGRRASPSAPGGDQDRVSTTPQ---- 489
+GP P+ P+ P +G + G +P PG + P
Sbjct: 1327 LGSIGPPGPI-GPKGPPGVRGDPGTLKIISLPGSPGPPGTPGEPGMQGEPGPPGPPGNLG 1385
Query: 490 ---PTAQPGSGAGPQRPGPTQKRGGRGVR---VPEGSPARIAFSGRRG 531
P +PG P PGP ++G +G + P GS G+RG
Sbjct: 1386 PCGPRGKPGKDGKPGTPGPAGEKGNKGSKGEPGPAGSDGLPGLKGKRG 1433
Score = 42.7 bits (99), Expect = 0.001
Identities = 115/468 (24%), Positives = 150/468 (32%), Gaps = 83/468 (17%)
Query: 166 PGPIQGGGNWELFPRKQCSQGRPG-LPTRTMPRDTGQPTRTMLWDTGQPCV-LPQGPAVT 223
PGP G+ + FP + S G PG + +P G P G+P V +P GP
Sbjct: 702 PGPPGPKGD-QGFPGTKGSLGCPGKMGEPGLPGKPGLPGAK-----GEPAVAMPGGPGT- 754
Query: 224 PPAFPGVQET--------LPSLPVAPGAPGQRGRPSPYSLRVRG-PRQDLPH-------- 266
P FPG + LP LP PG PG G P RG P Q P
Sbjct: 755 -PGFPGERGNSGEHGEIGLPGLPGLPGTPGNEGLDGP-----RGDPGQPGPPGEQGPPGR 808
Query: 267 -LDGLHGAHDHHGLGHASAQAAQQPTRAVQPSLGIPHVVAEEL--EHSKPGGGRRSRELR 323
++G GA GL Q ++ + GIP + E PG E+
Sbjct: 809 CIEGPRGAQGLPGLNGLKGQQGRRGKTGPKGDPGIPGLDRSGFPGETGSPGIPGHQGEMG 868
Query: 324 P---RYRPRTPWLRTVCRTQSPGGGGGQDPTALGAAALGTRPPRRRGLPLLTDAPVPRRV 380
P R P P + PG G A PP G P +P
Sbjct: 869 PLGQRGYPGNPGI-----LGPPGEDGVIGMMGFPGAIGPPGPPGNPGTPGQRGSP----- 918
Query: 381 RALVQLQLRLHVLGGEGDADLDATRQAACRDREPAPETPARPLALGPLPRPGLRSARPPR 440
+ G +G + P P + +G PGL+
Sbjct: 919 ----------GIPGVKGQRGTPGAKGEQGDKGNPGPSEISH--VIGDKGEPGLKGFAGNP 966
Query: 441 QCRGEHRLGPHAPMPSPRCPGEAQGVTDGRRASPSAPGGDQDRVSTTPQPTAQ--PGSGA 498
+G + P PG A P P GD +P + PGS
Sbjct: 967 GEKGNRGV--------PGMPGLKGLKGLPGPAGPPGPRGDLGSTGNPGEPGLRGIPGSMG 1018
Query: 499 GPQRPGPTQKRGGRGVRVPEGSPARIAFSGRRGGAKAQPMAEAESLGDRERRDG--GGAA 556
PG KRG G G P G +G K +P S G R G G
Sbjct: 1019 NMGMPGSKGKRGTLGFPGRAGRPGLPGIHGLQGD-KGEP---GYSEGTRPGPPGPTGDPG 1074
Query: 557 GGGAVAQLRAVGQ----GALCAAPRDSGPRVCATVESGGIPRDPGGQG 600
G + + +GQ G L A + P + S G+P PG G
Sbjct: 1075 LPGDMGKKGEMGQPGPPGHLGPAGPEGAP---GSPGSPGLPGKPGPHG 1119
Score = 35.8 bits (81), Expect = 0.12
Identities = 99/406 (24%), Positives = 127/406 (31%), Gaps = 83/406 (20%)
Query: 217 PQGPAVTPPAFPGVQET--------LPSLPVAPGAPGQRGRPSPYSLRVRGPRQDLPHLD 268
PQGP P PG+ + LP +PG PG G PY L +P
Sbjct: 74 PQGPKGFP-GLPGLTGSKGVRGISGLPGFSGSPGLPGTPGNTGPYGL------VGVPGCS 126
Query: 269 GLHGAHDHHGLGHASAQAAQQPTRAVQPSLGIPHVVAEELEHSKPGGGRRSRELRPRYRP 328
G G GL ++ G P E++E G P+ P
Sbjct: 127 GSKGEQGFPGLPGTLGYPGIPGAAGLKGQKGAP-AKEEDIELDAKGDPGLPGAPGPQGLP 185
Query: 329 RTPWLRTVCRTQSPGGGGGQDPTALGA--AALGTRPPR------------RRGLPLLTDA 374
P PG G P A+G R P+ RG+ LT
Sbjct: 186 GPPGF--------PGPVGPPGPPGFFGFPGAMGPRGPKGHMGERVIGHKGERGVKGLTGP 237
Query: 375 PVPRRVRALVQLQLRLHVLGGEGDADLDATRQAACRDREPAPETPARPLALGPLPRPGLR 434
P P + + + G + DL + EP P GP PG
Sbjct: 238 PGPPGT-------VIVTLTGPDNRTDLKGEKGDKGAMGEPGPP--------GPSGLPG-E 281
Query: 435 SARPPRQCRGEHRL-GPHAPMPSPRCPGEAQGVTDGRRASPSAPGGDQDRVSTTPQPTAQ 493
S + G+ L G P PG ++GV G R P G +D +
Sbjct: 282 SYGSEKGAPGDPGLQGKPGKDGVPGFPG-SEGV-KGNRGFPGLMG--EDGIKGQKGDIGP 337
Query: 494 PGSGAGPQR-------------PGPTQKRGGRGVRVPEGSPARIAFSG-RRGGAKAQP-- 537
PG GP PGP RG RG + P G P G R G + P
Sbjct: 338 PGF-RGPTEYYDTYQEKGDEGTPGPPGPRGARGPQGPSGPPGVPGSPGSSRPGLRGAPGW 396
Query: 538 MAEAESLGDRER--RDGGGAAGGGAVAQLRAVGQGALCAAPRDSGP 581
S G+R R +D G G A G L +P GP
Sbjct: 397 PGLKGSKGERGRPGKDAMGTPGSPGCA-----GSPGLPGSPGPPGP 437
>gi|89142730 alpha 3 type IV collagen isoform 1 precursor [Homo
sapiens]
Length = 1670
Score = 64.7 bits (156), Expect = 2e-10
Identities = 122/470 (25%), Positives = 158/470 (33%), Gaps = 88/470 (18%)
Query: 166 PGPIQGGGNWELFPRKQCSQGRPGLPTRTMPRDTGQPTRTMLWDTGQPCVLPQGPAVT-- 223
PG ++G W + +GRPG P G L G P P GP
Sbjct: 388 PG-LRGAPGWPGLKGSKGERGRPGKDAMGTPGSPGCAGSPGL--PGSPG--PPGPPGDIV 442
Query: 224 ----PPAFPGVQETLPSLPVAPGAPGQRGRPS------PYSLRVRGPRQDLPHLDGLHGA 273
PP G+ L S P PG G +G P PY + GP P L GL G
Sbjct: 443 FRKGPPGDHGLPGYLGS-PGIPGVDGPKGEPGLLCTQCPY---IPGP----PGLPGLPGL 494
Query: 274 HDHHGLGHASAQAAQQPTRAVQPSLGIPHVVAEELEHSKPG-GGRRSRELRPRYRPRTPW 332
H G+ A + + + G+P PG G + L+P + P
Sbjct: 495 HGVKGIPGRQGAAGLKGSPGSPGNTGLPGFPGFPGAQGDPGLKGEKGETLQPEGQVGVPG 554
Query: 333 LRTVCRTQSPGGGGGQDPTALGAAALGTRPPRRRGLPLLTDAPVPRRVRALVQLQLRLHV 392
DP G P R+GL + P V+ L + L +
Sbjct: 555 ----------------DPGLRGQ-------PGRKGLDGIPGTP---GVKGLPGPKGELAL 588
Query: 393 LGGEGDADLDATRQAACRDREPAPETPARPLALGPLPRPGLRSAR-------PPRQCRGE 445
G +GD + P P PA P GP PGL+ + PP +
Sbjct: 589 SGEKGDQGPPGDPGSP---GSPGPAGPAGPPGYGPQGEPGLQGTQGVPGAPGPPGEAGPR 645
Query: 446 HRLGPHAPMPSPRCPGEAQGVTDGRRASPSAPG-----GDQDRVSTTPQPTAQPG-SGAG 499
L P+P P P G G + P PG GD P P +PG G G
Sbjct: 646 GELSVSTPVPGPPGPPGPPG-HPGPQGPPGIPGSLGKCGDPG----LPGPDGEPGIPGIG 700
Query: 500 -PQRPGPTQKRGGRGVRVPEGSPARIAFSGRRG-----GAKAQPMAEAESLGDRERRDGG 553
P PGP +G G + G P ++ G G GAK +P A A G G
Sbjct: 701 FPGPPGPKGDQGFPGTKGSLGCPGKMGEPGLPGKPGLPGAKGEP-AVAMPGGPGTPGFPG 759
Query: 554 GAAGGGAVAQLRAVGQGALCAAPRD---SGPRVCATVESGGIPRDPGGQG 600
G ++ G L P + GPR G P PG QG
Sbjct: 760 ERGNSGEHGEIGLPGLPGLPGTPGNEGLDGPR-----GDPGQPGPPGEQG 804
Score = 52.8 bits (125), Expect = 9e-07
Identities = 109/450 (24%), Positives = 140/450 (31%), Gaps = 81/450 (18%)
Query: 186 GRPGLPTRTMPRDTGQPT----RTMLWDTGQPCVLPQGPAVTPP----------AFPGVQ 231
G PGL P +TG P + + GQ P P + P FPG
Sbjct: 842 GIPGLDRSGFPGETGSPGIPGHQGEMGPLGQRGY-PGNPGILGPPGEDGVIGMMGFPGAI 900
Query: 232 ETLPSLPVAPGAPGQRGRPSPYSLRVRGPRQDLPHLDGLHGAHDHHGLGHASAQAAQQPT 291
P P PG PGQRG P +P + G G G +Q
Sbjct: 901 GP-PGPPGNPGTPGQRGSPG------------IPGVKGQRGTPGAKG---------EQGD 938
Query: 292 RAVQPSLGIPHVVAEELEHSKPGGGRRSRELRPRYRPRTPWLRTVCRTQSPGGGGGQDPT 351
+ I HV+ ++ E G E R P P L+ + P G G P
Sbjct: 939 KGNPGPSEISHVIGDKGEPGLKGFAGNPGEKGNRGVPGMPGLKGLKGLPGPAGPPG--PR 996
Query: 352 ALGAAALGTRPPRRRGLPLLTD---APVPRRVRALVQLQLRLHVLGGEGDADLDATRQAA 408
+ P RG+P P + R + R G G L +
Sbjct: 997 GDLGSTGNPGEPGLRGIPGSMGNMGMPGSKGKRGTLGFPGRAGRPGLPGIHGLQGDKG-- 1054
Query: 409 CRDREPAPETPARPLALGPLPRPGLRSARPPRQCRGEH----RLGPHAPMPSPRCPGEAQ 464
EP RP GP PGL + G+ LGP P +P PG
Sbjct: 1055 ----EPGYSEGTRPGPPGPTGDPGLPGDMGKKGEMGQPGPPGHLGPAGPEGAPGSPGSP- 1109
Query: 465 GVTDGRRASPSAPGGDQDR-------VSTTPQPTAQPGSGAGPQRPGPTQKRGGRGVRVP 517
P PG D + P PG P PGP G RG +
Sbjct: 1110 -------GLPGKPGPHGDLGFKGIKGLLGPPGIRGPPGLPGFPGSPGP---MGIRGDQGR 1159
Query: 518 EGSPARIAFSGRRGGAKAQPMAEAESLGDRERRDGGGAAGGGAVAQLRAVGQGALCAAPR 577
+G P G G +A P + D G G + A+G
Sbjct: 1160 DGIPGPAGEKGETGLLRAPPGPRGNPGAQGAKGDRGAPGFPGLPGRKGAMG--------- 1210
Query: 578 DSGPRVCATVESGGIPRDPGGQGHTLPENT 607
D+GPR +E G P PG G +P T
Sbjct: 1211 DAGPRGPTGIE--GFPGPPGLPGAIIPGQT 1238
Score = 46.6 bits (109), Expect = 7e-05
Identities = 99/408 (24%), Positives = 133/408 (32%), Gaps = 82/408 (20%)
Query: 182 QCSQGRPGLPTRTMPRDTGQPTRTMLWDTGQPCVLPQGPAVTPPAFPGVQETL--PSLPV 239
Q +G PG T P G PT D G P + + + P PG P
Sbjct: 1050 QGDKGEPGYSEGTRPGPPG-PTG----DPGLPGDMGKKGEMGQPGPPGHLGPAGPEGAPG 1104
Query: 240 APGAPGQRGRPSPYS-LRVRGPRQDLPHLDGLHGAHDHHGLGHASAQAAQQPTRAVQPSL 298
+PG+PG G+P P+ L +G + L G G GL R Q
Sbjct: 1105 SPGSPGLPGKPGPHGDLGFKG----IKGLLGPPGIRGPPGLPGFPGSPGPMGIRGDQGRD 1160
Query: 299 GIPHVVAEELE----------HSKPGG-GRRSRELRPRYRPRTPWLRTVCRTQSPGGGGG 347
GIP E+ E PG G + P + P P + P G G
Sbjct: 1161 GIPGPAGEKGETGLLRAPPGPRGNPGAQGAKGDRGAPGF-PGLPGRKGAMGDAGPRGPTG 1219
Query: 348 QD--------PTALGAAALGTR-PPRRRGLPLLTDAPVPRRVRALVQLQLRLHVLGGEGD 398
+ P A+ G R PP RG P P P HV+G +GD
Sbjct: 1220 IEGFPGPPGLPGAIIPGQTGNRGPPGSRGSPGAPGPPGPPGS----------HVIGIKGD 1269
Query: 399 ADL----------DATRQAACRDREPAPETPARPLALGPLPRPGLRSARPPRQCRGEH-- 446
R AP TP P GP PG + + +G
Sbjct: 1270 KGSMGHPGPKGPPGTAGDMGPPGRLGAPGTPGLP---GPRGDPGFQGFPGVKGEKGNPGF 1326
Query: 447 --RLGPHAPMPSPRCPGEAQGV-----------TDGRRASPSAPGGDQDRVSTTPQ---- 489
+GP P+ P+ P +G + G +P PG + P
Sbjct: 1327 LGSIGPPGPI-GPKGPPGVRGDPGTLKIISLPGSPGPPGTPGEPGMQGEPGPPGPPGNLG 1385
Query: 490 ---PTAQPGSGAGPQRPGPTQKRGGRGVR---VPEGSPARIAFSGRRG 531
P +PG P PGP ++G +G + P GS G+RG
Sbjct: 1386 PCGPRGKPGKDGKPGTPGPAGEKGNKGSKGEPGPAGSDGLPGLKGKRG 1433
Score = 42.7 bits (99), Expect = 0.001
Identities = 115/468 (24%), Positives = 150/468 (32%), Gaps = 83/468 (17%)
Query: 166 PGPIQGGGNWELFPRKQCSQGRPG-LPTRTMPRDTGQPTRTMLWDTGQPCV-LPQGPAVT 223
PGP G+ + FP + S G PG + +P G P G+P V +P GP
Sbjct: 702 PGPPGPKGD-QGFPGTKGSLGCPGKMGEPGLPGKPGLPGAK-----GEPAVAMPGGPGT- 754
Query: 224 PPAFPGVQET--------LPSLPVAPGAPGQRGRPSPYSLRVRG-PRQDLPH-------- 266
P FPG + LP LP PG PG G P RG P Q P
Sbjct: 755 -PGFPGERGNSGEHGEIGLPGLPGLPGTPGNEGLDGP-----RGDPGQPGPPGEQGPPGR 808
Query: 267 -LDGLHGAHDHHGLGHASAQAAQQPTRAVQPSLGIPHVVAEEL--EHSKPGGGRRSRELR 323
++G GA GL Q ++ + GIP + E PG E+
Sbjct: 809 CIEGPRGAQGLPGLNGLKGQQGRRGKTGPKGDPGIPGLDRSGFPGETGSPGIPGHQGEMG 868
Query: 324 P---RYRPRTPWLRTVCRTQSPGGGGGQDPTALGAAALGTRPPRRRGLPLLTDAPVPRRV 380
P R P P + PG G A PP G P +P
Sbjct: 869 PLGQRGYPGNPGI-----LGPPGEDGVIGMMGFPGAIGPPGPPGNPGTPGQRGSP----- 918
Query: 381 RALVQLQLRLHVLGGEGDADLDATRQAACRDREPAPETPARPLALGPLPRPGLRSARPPR 440
+ G +G + P P + +G PGL+
Sbjct: 919 ----------GIPGVKGQRGTPGAKGEQGDKGNPGPSEISH--VIGDKGEPGLKGFAGNP 966
Query: 441 QCRGEHRLGPHAPMPSPRCPGEAQGVTDGRRASPSAPGGDQDRVSTTPQPTAQ--PGSGA 498
+G + P PG A P P GD +P + PGS
Sbjct: 967 GEKGNRGV--------PGMPGLKGLKGLPGPAGPPGPRGDLGSTGNPGEPGLRGIPGSMG 1018
Query: 499 GPQRPGPTQKRGGRGVRVPEGSPARIAFSGRRGGAKAQPMAEAESLGDRERRDG--GGAA 556
PG KRG G G P G +G K +P S G R G G
Sbjct: 1019 NMGMPGSKGKRGTLGFPGRAGRPGLPGIHGLQGD-KGEP---GYSEGTRPGPPGPTGDPG 1074
Query: 557 GGGAVAQLRAVGQ----GALCAAPRDSGPRVCATVESGGIPRDPGGQG 600
G + + +GQ G L A + P + S G+P PG G
Sbjct: 1075 LPGDMGKKGEMGQPGPPGHLGPAGPEGAP---GSPGSPGLPGKPGPHG 1119
Score = 35.8 bits (81), Expect = 0.12
Identities = 99/406 (24%), Positives = 127/406 (31%), Gaps = 83/406 (20%)
Query: 217 PQGPAVTPPAFPGVQET--------LPSLPVAPGAPGQRGRPSPYSLRVRGPRQDLPHLD 268
PQGP P PG+ + LP +PG PG G PY L +P
Sbjct: 74 PQGPKGFP-GLPGLTGSKGVRGISGLPGFSGSPGLPGTPGNTGPYGL------VGVPGCS 126
Query: 269 GLHGAHDHHGLGHASAQAAQQPTRAVQPSLGIPHVVAEELEHSKPGGGRRSRELRPRYRP 328
G G GL ++ G P E++E G P+ P
Sbjct: 127 GSKGEQGFPGLPGTLGYPGIPGAAGLKGQKGAP-AKEEDIELDAKGDPGLPGAPGPQGLP 185
Query: 329 RTPWLRTVCRTQSPGGGGGQDPTALGA--AALGTRPPR------------RRGLPLLTDA 374
P PG G P A+G R P+ RG+ LT
Sbjct: 186 GPPGF--------PGPVGPPGPPGFFGFPGAMGPRGPKGHMGERVIGHKGERGVKGLTGP 237
Query: 375 PVPRRVRALVQLQLRLHVLGGEGDADLDATRQAACRDREPAPETPARPLALGPLPRPGLR 434
P P + + + G + DL + EP P GP PG
Sbjct: 238 PGPPGT-------VIVTLTGPDNRTDLKGEKGDKGAMGEPGPP--------GPSGLPG-E 281
Query: 435 SARPPRQCRGEHRL-GPHAPMPSPRCPGEAQGVTDGRRASPSAPGGDQDRVSTTPQPTAQ 493
S + G+ L G P PG ++GV G R P G +D +
Sbjct: 282 SYGSEKGAPGDPGLQGKPGKDGVPGFPG-SEGV-KGNRGFPGLMG--EDGIKGQKGDIGP 337
Query: 494 PGSGAGPQR-------------PGPTQKRGGRGVRVPEGSPARIAFSG-RRGGAKAQP-- 537
PG GP PGP RG RG + P G P G R G + P
Sbjct: 338 PGF-RGPTEYYDTYQEKGDEGTPGPPGPRGARGPQGPSGPPGVPGSPGSSRPGLRGAPGW 396
Query: 538 MAEAESLGDRER--RDGGGAAGGGAVAQLRAVGQGALCAAPRDSGP 581
S G+R R +D G G A G L +P GP
Sbjct: 397 PGLKGSKGERGRPGKDAMGTPGSPGCA-----GSPGLPGSPGPPGP 437
>gi|4502961 alpha 1 type VII collagen precursor [Homo sapiens]
Length = 2944
Score = 63.5 bits (153), Expect = 5e-10
Identities = 128/474 (27%), Positives = 161/474 (33%), Gaps = 86/474 (18%)
Query: 152 ALLQDSGCEALLAGPGPIQGGGNWELFPRKQCSQGRPGLPTRTMPRDTGQPTRTMLWDTG 211
A+ D G PGP +GG + G PGLP +P G
Sbjct: 1397 AMKGDKGDRGERGPPGPGEGG----------IAPGEPGLPG--LPGSPG----------- 1433
Query: 212 QPCVLPQGPAVTPPAFPGV----QETLPSLPVAPGAPGQRG-RPSPYSLRVRGPRQDLPH 266
PQGP V PP G ++ P LP PG+PG++G R P ++ +G R
Sbjct: 1434 -----PQGP-VGPPGKKGEKGDSEDGAPGLPGQPGSPGEQGPRGPPGAIGPKGDR----- 1482
Query: 267 LDGLHGAHDHHGLGHASAQAAQQPTRAVQPSLGIPHVVAE---ELEHSKPGGGRRSRELR 323
G G LG A + + P S G+P V + PG R E
Sbjct: 1483 --GFPGP-----LGEAGEKGERGPPGPAG-SRGLPGVAGRPGAKGPEGPPGPTGRQGEKG 1534
Query: 324 PRYRPRTPWLRTVCRTQSPGGGGGQDPTALGAAALGTRPPRRRGLPLLTDAPVPRRV--- 380
RP P + P G G A A G + R +L P P+
Sbjct: 1535 EPGRPGDPAVVGPA-VAGPKGEKGDVGPAGPRGATGVQGERGPPGLVLPGDPGPKGDPGD 1593
Query: 381 RALVQLQLRLHVLGGEGDADLDATRQAACRDREPAPETP-------ARPLALGPLPRPGL 433
R + L R G GD+ + R P P P GP PGL
Sbjct: 1594 RGPIGLTGRA---GPPGDSGPPGEKGDPGRPGPPGPVGPRGRDGEVGEKGDEGPPGDPGL 1650
Query: 434 RSARPPRQCRGEHRL-GPHAPMPSPRCPGEAQGVTDGRRASPSAPGGDQDRVSTTPQPTA 492
R RG + GP PGE DGR SP + G DR P P
Sbjct: 1651 PGKAGERGLRGAPGVRGPVGEKGDQGDPGE-----DGRNGSPGSSGPKGDRGE--PGPPG 1703
Query: 493 QPG----SGAGPQRPGPTQKRGGRGVRVPEGSPARIAFSGRRG--GAKAQPMAEAESLGD 546
PG +G G + G RG G R P+G P G RG G + P + GD
Sbjct: 1704 PPGRLVDTGPGAREKGEPGDRGQEGPRGPKGDPGLPGAPGERGIEGFRGPPGPQ----GD 1759
Query: 547 RERRDGGGAAGGGAVAQLRAVGQGALCAAPRDSGPRVCATVESGGIPRDPGGQG 600
R G G L G+ L P +GP + G DPG G
Sbjct: 1760 PGVRGPAGEKGDRGPPGLD--GRSGLDGKPGAAGP--SGPNGAAGKAGDPGRDG 1809
Score = 54.3 bits (129), Expect = 3e-07
Identities = 123/470 (26%), Positives = 149/470 (31%), Gaps = 91/470 (19%)
Query: 143 DEEADGLVRALLQDSGCEALLAGPGPI-----QGGGNWELFPRKQCSQ-GRPGLPTRT-M 195
D+ GL AL Q S P P+ Q G E+ R Q G PGLP RT
Sbjct: 1223 DQAVSGLATALCQASFTTQPRPEPCPVYCPKGQKGEPGEMGLRGQVGPPGDPGLPGRTGA 1282
Query: 196 PRDTGQP-TRTMLWDTGQPCV--LPQGPA-VTPPAFPGVQETLPSLPVAPGAPGQRGRPS 251
P G P + T + G P P P P PG P L +PG PG RG P
Sbjct: 1283 PGPQGPPGSATAKGERGFPGADGRPGSPGRAGNPGTPGA----PGLKGSPGLPGPRGDPG 1338
Query: 252 PYSLRVRGPRQDLPHLDGLHGAHDHHGLGHASAQAAQQPTRAVQPSLGIPHVVAEELEHS 311
RGPR G G A Q P G+P +
Sbjct: 1339 E-----RGPR----------GPKGEPG-------APGQVIGGEGP--GLPGRKGDPGPSG 1374
Query: 312 KPGGGRRSRELRPRYRPRTPWLRTVCRTQSPGGGGGQDPTALGAAALGTRPPRRRGLPLL 371
PG + PR P P G G + P G + P GLP L
Sbjct: 1375 PPGPRGPLGDPGPRGPPGLP---GTAMKGDKGDRGERGPPGPGEGGIA---PGEPGLPGL 1428
Query: 372 TDAPVPRRVRALVQLQLRLHVLGGEGDADLDATRQAACRDREPA-PETPARPLALGPLPR 430
+P P+ + G +GD++ D P P P P GP
Sbjct: 1429 PGSPGPQGPVGPPGKK------GEKGDSE----------DGAPGLPGQPGSPGEQGPRGP 1472
Query: 431 PGLRSARPPRQCRGEHRLGPHAPMPSPRCPGEAQGVTDGRRASPSAPGGDQDRVSTTPQP 490
PG +GP P GEA G + PG R P
Sbjct: 1473 PG--------------AIGPKGDRGFPGPLGEA-----GEKGERGPPGPAGSR--GLPGV 1511
Query: 491 TAQPGSGAGPQRPGPTQKRGGRGVRVPEGSPARIAFSGRRGGAKAQPMAEAESLGDRERR 550
+PG+ PGPT ++G +G G PA + G A A P E +G R
Sbjct: 1512 AGRPGAKGPEGPPGPTGRQGEKGEPGRPGDPAVV------GPAVAGPKGEKGDVGPAGPR 1565
Query: 551 DGGGAAGGGAVAQLRAVGQGALCAAPRDSGPRVCATVESGGIPRDPGGQG 600
G G L G P D GP G P D G G
Sbjct: 1566 GATGVQGERGPPGLVLPGDPGPKGDPGDRGP--IGLTGRAGPPGDSGPPG 1613
Score = 48.5 bits (114), Expect = 2e-05
Identities = 110/432 (25%), Positives = 139/432 (32%), Gaps = 76/432 (17%)
Query: 186 GRPGLPTRTMPRDTGQP-TRTMLWDTGQPCVLPQGPAVTPPAFPGVQETLPSLPVAPGAP 244
G G P + P G P R + D G P PQGP PG+ A
Sbjct: 1985 GEQGPPGKEGP--IGFPGERGLKGDRGDPG--PQGP-------PGL------------AL 2021
Query: 245 GQRGRPSPYSLRVRGPRQDLPHLDGLHGAHDHHGLGHASAQAAQQPTRAVQPSLGIPHVV 304
G+RG P P L + +P L G G G + ++ R Q G P +
Sbjct: 2022 GERGPPGPSGLAGEPGKPGIPGLPGRAGGVGEAGRPGERGERGEKGERGEQGRDGPPGLP 2081
Query: 305 AEELEHSKPGGGRRSRELRPRYRPRTPWLRTVCRTQSPGGGGGQDPTALGAA-----ALG 359
PG P+ P PG G Q P L A + G
Sbjct: 2082 GTPGPPGPPG---------PKVSVDEP---------GPGLSGEQGPPGLKGAKGEPGSNG 2123
Query: 360 TRPPRR-RGLPLLTD---APVPRRVRALVQLQLRLHVLGGEGDADLDATRQ-----AACR 410
+ P+ RG+P + P PR L + G EG L R
Sbjct: 2124 DQGPKGDRGVPGIKGDRGEPGPRGQDGNPGLPGERGMAGPEGKPGLQGPRGPPGPVGGHG 2183
Query: 411 DREPAPETPARPLALGPLPRPGLRSARPPRQCRGEHRLGPHAPMPSPRCPGEAQGVTDGR 470
D P P P GP GL+ G GP + P PG + V G
Sbjct: 2184 DPGP-PGAPGLAGPAGPQGPSGLKGEPGETGPPGRGLTGPTGAVGLPGPPGPSGLV--GP 2240
Query: 471 RASPSAPGGDQDRVSTTPQPTAQPGSGAGPQRPGPTQKRGGRGVRVPEGSPARIAFSGRR 530
+ SP PG +V T +P A GA G RG GV G P + G
Sbjct: 2241 QGSPGLPG----QVGETGKPGAPGRDGAS----GKDGDRGSPGVPGSPGLPGPVGPKGEP 2292
Query: 531 GGAKAQPMAEAESLGDRERRDGGGAAGGGAVAQLRAVGQGALCAAPRDSGPRVCATVESG 590
G A A G + + G G V + A G L + G E+G
Sbjct: 2293 GPTGAPGQAVVGLPGAKGEKGAPGGLAGDLVGEPGAKGDRGLPGPRGEKG-------EAG 2345
Query: 591 --GIPRDPGGQG 600
G P DPG G
Sbjct: 2346 RAGEPGDPGEDG 2357
Score = 46.6 bits (109), Expect = 7e-05
Identities = 110/412 (26%), Positives = 142/412 (34%), Gaps = 83/412 (20%)
Query: 186 GRPGLPTRT-------MPRDTGQPTRTMLWDTGQ-----PCVLPQGPAVTPPAFPG---- 229
G PGLP R P + G+ R + G+ P LP P PP PG
Sbjct: 2040 GIPGLPGRAGGVGEAGRPGERGE--RGEKGERGEQGRDGPPGLPGTPG--PPGPPGPKVS 2095
Query: 230 VQETLPSLPVAPGAPGQRG-RPSPYSLRVRGPRQD--LPHLDG------LHGAHDHHGLG 280
V E P L G PG +G + P S +GP+ D +P + G G + GL
Sbjct: 2096 VDEPGPGLSGEQGPPGLKGAKGEPGSNGDQGPKGDRGVPGIKGDRGEPGPRGQDGNPGLP 2155
Query: 281 HASAQAAQQPTRAVQPSLGIPHVVAEELEHSKPGGGRRSRELRPRYRPRTPWLRTVCRTQ 340
A + +Q G P V H PG P P L Q
Sbjct: 2156 GERGMAGPEGKPGLQGPRGPPGPVGG---HGDPGP------------PGAPGLAGPAGPQ 2200
Query: 341 SPGGGGGQDPTALGAAALG-TRPPRRRGLPLLTDAPVPRRV---RALVQLQLRLHVLGGE 396
P G G+ P G G T P GLP P P + + L ++ G
Sbjct: 2201 GPSGLKGE-PGETGPPGRGLTGPTGAVGLP---GPPGPSGLVGPQGSPGLPGQVGETGKP 2256
Query: 397 GDADLD-ATRQAACRDREPAPETPARPLALGPLPRPGLRSAR---------------PPR 440
G D A+ + R P +P P +GP PG A P
Sbjct: 2257 GAPGRDGASGKDGDRGSPGVPGSPGLPGPVGPKGEPGPTGAPGQAVVGLPGAKGEKGAPG 2316
Query: 441 QCRGEHRLGPHAP----MPSPRCP-GEAQGVTDGRRASPSAPGGDQDRVSTTPQP-TAQP 494
G+ P A +P PR GEA GR P PG D + + P+ P
Sbjct: 2317 GLAGDLVGEPGAKGDRGLPGPRGEKGEA-----GRAGEPGDPGEDGQKGAPGPKGFKGDP 2371
Query: 495 GSGA--GPQRPGPTQKRGGRGVRVPEGSPARIAFSGRRG--GAKAQPMAEAE 542
G G P PGP +G G+ G+P + F G+ G G QP E
Sbjct: 2372 GVGVPGSPGPPGPPGVKGDLGLPGLPGAPGVVGFPGQTGPRGEMGQPGPSGE 2423
Score = 43.5 bits (101), Expect = 6e-04
Identities = 58/211 (27%), Positives = 66/211 (31%), Gaps = 20/211 (9%)
Query: 413 EPAPETPARPLALGPLPRPGLRSARPPRQCRGEHRLGPHAPMPSPRCPGEAQGVTDGRRA 472
+P PE G PG R G+ L P P+ P G R
Sbjct: 1241 QPRPEPCPVYCPKGQKGEPGEMGLRGQVGPPGDPGLPGRTGAPGPQGP-PGSATAKGERG 1299
Query: 473 SPSAPG--GDQDRVSTTPQPTAQPGSGAGPQRPGPTQKRGGRGVRVPEGSPAR------- 523
P A G G R P A PG P PGP G RG R P+G P
Sbjct: 1300 FPGADGRPGSPGRAGNPGTPGA-PGLKGSPGLPGPRGDPGERGPRGPKGEPGAPGQVIGG 1358
Query: 524 --IAFSGRRGG-AKAQPMAEAESLGDRERRDGGGAAGGGAVAQLRAVGQGALCAAPRDSG 580
GR+G + P LGD R G G G+ P G
Sbjct: 1359 EGPGLPGRKGDPGPSGPPGPRGPLGDPGPRGPPGLPGTAMKGDKGDRGE----RGPPGPG 1414
Query: 581 PRVCATVESG--GIPRDPGGQGHTLPENTWG 609
A E G G+P PG QG P G
Sbjct: 1415 EGGIAPGEPGLPGLPGSPGPQGPVGPPGKKG 1445
Score = 43.5 bits (101), Expect = 6e-04
Identities = 124/460 (26%), Positives = 155/460 (33%), Gaps = 65/460 (14%)
Query: 172 GGNWELFPRKQCSQGRPGLPTRTMPRDTGQPTRTMLWDTGQPCVLPQGPAVTPPAFPGVQ 231
G E PR Q G PGLP R M G+P + QGP P G
Sbjct: 2138 GDRGEPGPRGQ--DGNPGLPGE----------RGMAGPEGKPGL--QGPRGPPGPVGGHG 2183
Query: 232 ETLPSLPVAPGAPGQRGRPSPYSLRVRGPRQDLPHLDGLHGAHDHHGLGHASAQAAQQPT 291
+ P P APG G G P L+ P + P GL G GL P+
Sbjct: 2184 D--PGPPGAPGLAGPAGPQGPSGLKGE-PGETGPPGRGLTGPTGAVGL-----PGPPGPS 2235
Query: 292 RAVQP--SLGIPHVVAEELEHSKPGGGRRSRELRPRYRPRTPWLRTVCRTQSPGGGGGQD 349
V P S G+P V E + PG S + R P P + P G G
Sbjct: 2236 GLVGPQGSPGLPGQVGETGKPGAPGRDGASGKDGDRGSPGVPGSPGLPGPVGPKGEPG-- 2293
Query: 350 PT-ALGAAALGTRPPR-RRGLPL-----LTDAPVPRRVRALVQLQLRLHVLG--GE-GDA 399
PT A G A +G + +G P L P + R L + G GE GD
Sbjct: 2294 PTGAPGQAVVGLPGAKGEKGAPGGLAGDLVGEPGAKGDRGLPGPRGEKGEAGRAGEPGDP 2353
Query: 400 DLDATRQAACRDR---EP------APETPARPLALGPLPRPGLRSARPPRQCRGEHRLGP 450
D + A +P +P P P G L PGL A P + GP
Sbjct: 2354 GEDGQKGAPGPKGFKGDPGVGVPGSPGPPGPPGVKGDLGLPGLPGA--PGVVGFPGQTGP 2411
Query: 451 HAPMPSPRCPGEAQGVTDGRRASPSAPGGDQDRVSTTPQPTAQPGSG----AGPQRPGPT 506
M P GE R P G + P A G G PGP
Sbjct: 2412 RGEMGQPGPSGERGLAGPPGREGIPGPLGPPGPPGSVGPPGASGLKGDKGDPGVGLPGPR 2471
Query: 507 QKRGGRGVRVPEGSPARIAFSGRRGGAKAQPMAEAESLGDRERRDGGGAAG--GGAVAQL 564
+RG G+R +G P + G G S G+R + G+AG G
Sbjct: 2472 GERGEPGIRGEDGRPGQEGPRGLTG--------PPGSRGERGEKGDVGSAGLKGDKGDSA 2523
Query: 565 RAVGQGALCAAPRDSGPRVCATVESGGIPR----DPGGQG 600
+G A D G R ++ PR DPG +G
Sbjct: 2524 VILGPPGPRGAKGDMGERGPRGLDGDKGPRGDNGDPGDKG 2563
Score = 42.4 bits (98), Expect = 0.001
Identities = 106/423 (25%), Positives = 134/423 (31%), Gaps = 57/423 (13%)
Query: 185 QGRPGLPTRTMPRDTGQPTRTMLWDTGQPCVLPQGPAVTPPAFPGVQETLPSLPVAPGAP 244
QG G P +P D G D G + PP G P G P
Sbjct: 1571 QGERGPPGLVLPGDPGPKG-----DPGDRGPIGLTGRAGPPGDSGP-------PGEKGDP 1618
Query: 245 GQRGRPSPYSLRVRGPRQDLPHLDGLHGAHDHHGLGHASAQAAQQPTRAVQPSLGIPHVV 304
G+ G P P R R DG G G + R ++ + G+ V
Sbjct: 1619 GRPGPPGPVGPRGR---------DGEVGEKGDEGPPGDPGLPGKAGERGLRGAPGVRGPV 1669
Query: 305 AEELEHSKPGGGRR------SRELRPRYRPRTPWLRTVCRTQSPGGGGGQDPTALGAAAL 358
E+ + PG R S R P P PG +P G
Sbjct: 1670 GEKGDQGDPGEDGRNGSPGSSGPKGDRGEPGPPGPPGRLVDTGPGAREKGEPGDRGQE-- 1727
Query: 359 GTRPPRRRGLPLLTDAPVPRRVRAL-----VQLQLRLHVLGGE-GDADLDATRQAACRDR 412
G R P+ G P L AP R + Q + GE GD + D
Sbjct: 1728 GPRGPK--GDPGLPGAPGERGIEGFRGPPGPQGDPGVRGPAGEKGDRGPPGLDGRSGLDG 1785
Query: 413 EPAPETPARPL-ALGPLPRPGLRSARPPRQCRGEHRL-GPHAPMPSPRCPGE-AQGVTDG 469
+P P+ P A G PG R P RGE L GP P P PGE + +G
Sbjct: 1786 KPGAAGPSGPNGAAGKAGDPG-RDGLPG--LRGEQGLPGPSGPPGLPGKPGEDGKPGLNG 1842
Query: 470 RRASPSAPGGDQDRVSTTPQPTAQPGSGAGPQRPGPTQKRGGRGVRVPEGSPARIAFSGR 529
+ P PG D + G+ R GP +RG G+ P+G P G
Sbjct: 1843 KNGEPGDPGEDGRKGEK-----GDSGASGREGRDGPKGERGAPGILGPQGPPGLPGPVGP 1897
Query: 530 RGGAKAQPMAEAESLGDRERRDGGGAAGGGAVAQLRAVGQGALCAAPRDSGPRVCATVES 589
G GDR G G G+ L P S P V +E+
Sbjct: 1898 PGQGFPGVPGGTGPKGDRGETGSKGEQG--------LPGERGLRGEP-GSVPNVDRLLET 1948
Query: 590 GGI 592
GI
Sbjct: 1949 AGI 1951
Score = 38.5 bits (88), Expect = 0.018
Identities = 106/418 (25%), Positives = 137/418 (32%), Gaps = 68/418 (16%)
Query: 211 GQPCV-LPQGPAVTPPAFPGVQETL--PSLPVAPGA---PGQRG------RPSPYSLR-V 257
G P V +P P PP PGV+ L P LP APG PGQ G +P P R +
Sbjct: 2369 GDPGVGVPGSPG--PPGPPGVKGDLGLPGLPGAPGVVGFPGQTGPRGEMGQPGPSGERGL 2426
Query: 258 RGP--RQDLPHLDGLHGAHDHHGLGHASAQAAQQPTRAVQPSLGIPHVVAEELEHSKPGG 315
GP R+ +P G G G AS + P +G+P E E G
Sbjct: 2427 AGPPGREGIPGPLGPPGPPGSVGPPGASGLKGDKG----DPGVGLPGPRGERGEPGIRGE 2482
Query: 316 GRRSRELRPRYRPRTPWLRTVCRTQSPGGGGG-QDPTALGAAALGTRPPR-------RRG 367
R + PR P R + G G + A LG PR RG
Sbjct: 2483 DGRPGQEGPRGLTGPPGSRGERGEKGDVGSAGLKGDKGDSAVILGPPGPRGAKGDMGERG 2542
Query: 368 LPLLTDAPVPRRVRALVQLQLRLHVLGGEGDADLDATRQAACRDREP-APETPARPLALG 426
L PR + G +G A L R +P A P P + G
Sbjct: 2543 PRGLDGDKGPRGDNGDPGDKGSKGEPGDKGSAGLPGLRGLLGPQGQPGAAGIPGDPGSPG 2602
Query: 427 PLPRPGLRSARP------PRQCRGEHRLGPHAPMPSPRCPGEAQGVTDGRRASPSAPG-- 478
PG+R + PR +GE + C + + G P PG
Sbjct: 2603 KDGVPGIRGEKGDVGFMGPRGLKGERGV-------KGACGLDGEKGDKGEAGPPGRPGLA 2655
Query: 479 GDQDRVSTTPQPTAQPGSGAGPQR---------------PGPTQKRGGRGVRVPEGSPAR 523
G + + PG P + PGP +G +G R G+P
Sbjct: 2656 GHKGEMGEP----GVPGQSGAPGKEGLIGPKGDRGFDGQPGPKGDQGEKGER---GTPGI 2708
Query: 524 IAFSGRRGG-AKAQPMAEAESLGDRERRDGGGAAGGGAVAQLRAVGQGALCAAPRDSG 580
F G G A P S+G R G G R VG + AP + G
Sbjct: 2709 GGFPGPSGNDGSAGPPGPPGSVGPRGPEGLQGQKGERGPPGERVVGAPGVPGAPGERG 2766
Score = 30.0 bits (66), Expect = 6.5
Identities = 44/181 (24%), Positives = 68/181 (37%), Gaps = 21/181 (11%)
Query: 139 QGGHDEEADGLVRALLQDSGCEALLAGPGPIQGGGNWELFPRKQCSQGRPGLPTRTMPR- 197
+G E+ D L D G A++ GP P G ++ R G GL PR
Sbjct: 2501 RGERGEKGDVGSAGLKGDKGDSAVILGP-PGPRGAKGDMGER-----GPRGLDGDKGPRG 2554
Query: 198 DTGQP----TRTMLWDTGQPCVLPQGPAVTPPAFPGVQETLPSLPVAPGAPGQRGRPSPY 253
D G P ++ D G + + P PG +P PG+PG+ G P
Sbjct: 2555 DNGDPGDKGSKGEPGDKGSAGLPGLRGLLGPQGQPGAA----GIPGDPGSPGKDGVPG-- 2608
Query: 254 SLRVRGPRQDLPHLDGLHGAHDHHGLGHASAQAAQQPTRAVQPSLGIPHVVAEELEHSKP 313
+RG + D+ + G G G+ A ++ + G P + + E +P
Sbjct: 2609 ---IRGEKGDVGFM-GPRGLKGERGVKGACGLDGEKGDKGEAGPPGRPGLAGHKGEMGEP 2664
Query: 314 G 314
G
Sbjct: 2665 G 2665
Score = 30.0 bits (66), Expect = 6.5
Identities = 24/67 (35%), Positives = 26/67 (38%), Gaps = 9/67 (13%)
Query: 449 GPHAPMPS--PRCPGEAQGVTDGRRASPSAPGGDQDRVSTTPQPTAQPGSGAGPQRPGPT 506
GP P S PR P QG G R P +RV P PG RPGP
Sbjct: 2722 GPPGPPGSVGPRGPEGLQG-QKGERGPPG------ERVVGAPGVPGAPGERGEQGRPGPA 2774
Query: 507 QKRGGRG 513
RG +G
Sbjct: 2775 GPRGEKG 2781
>gi|110349772 alpha 1 type I collagen preproprotein [Homo sapiens]
Length = 1464
Score = 60.8 bits (146), Expect = 3e-09
Identities = 107/413 (25%), Positives = 132/413 (31%), Gaps = 61/413 (14%)
Query: 209 DTGQPCVLPQGPAVTPPAFPGVQETLPSLPVAPGAPGQRGRPSPYSLRVRGPRQDLPHLD 268
DTG P+GP PA P ++ +P P PG PG G P P L Q
Sbjct: 116 DTG-----PRGPR--GPAGPPGRDGIPGQPGLPGPPGPPGPPGPPGLGGNFAPQ------ 162
Query: 269 GLHGAHDHHGLGHASAQAAQQPT--RAVQPSLGIPHVVAEELEHSKPGGGRRSRELRPRY 326
L +D G S P+ R + G P + +PG S + PR
Sbjct: 163 -LSYGYDEKSTGGISVPGPMGPSGPRGLPGPPGAPGPQGFQGPPGEPGEPGASGPMGPRG 221
Query: 327 RPRTPWLRTVCRTQSPGGGGGQDPTALGAAALGTR----PPRRRGLPLLTDAPVPRRVRA 382
P P G G D A G R P RGLP P + R
Sbjct: 222 PP------------GPPGKNGDDGEAGKPGRPGERGPPGPQGARGLPGTAGLPGMKGHRG 269
Query: 383 LVQLQLRLHVLGGEGDADLDATRQAACRDREPAPETPARPLALGPLPRPGLR---SARPP 439
L G +GDA A + +P P +GP PG R A P
Sbjct: 270 FSGLD------GAKGDAG-----PAGPKGEPGSPGENGAPGQMGPRGLPGERGRPGAPGP 318
Query: 440 RQCRGEH----RLGPHAPMPSPRCPGEAQGVTDGRRASPSAPGGDQ--DRVSTTPQPTAQ 493
RG GP P PG V A P P G + V P P
Sbjct: 319 AGARGNDGATGAAGPPGPTGPAGPPGFPGAVGAKGEAGPQGPRGSEGPQGVRGEPGPPGP 378
Query: 494 PGSGAGPQRPGPTQKRGGRGVRVPEGSPARIAFSGRRGGAKAQPMAEAESLGDRERRDGG 553
G+ PG + G +G G F G RG + P G +
Sbjct: 379 AGAAGPAGNPGADGQPGAKGANGAPGIAGAPGFPGARG--PSGPQGPGGPPGPKGNSGEP 436
Query: 554 GAAGG----GAVAQLRAVGQGALCAAPRDSGPRVCATVESG--GIPRDPGGQG 600
GA G GA + VG + G R A E G G+P PG +G
Sbjct: 437 GAPGSKGDTGAKGEPGPVGVQGPPGPAGEEGKR-GARGEPGPTGLPGPPGERG 488
Score = 59.7 bits (143), Expect = 8e-09
Identities = 113/459 (24%), Positives = 137/459 (29%), Gaps = 91/459 (19%)
Query: 166 PGPIQGGGNWELFPRKQCSQGRPGLPTRTMPRDTGQPTRTMLWDTGQPCVL-PQGPAVTP 224
PGP+ G PR G PG P P+ P + G+P P GP P
Sbjct: 178 PGPMGPSG-----PR-----GLPGPPGAPGPQGFQGPPG----EPGEPGASGPMGPR-GP 222
Query: 225 PAFPGVQETLPSLPVAPGAPGQRGRPSPYSLRVRGPRQDLPHLDGLHGAHDHHGLGHASA 284
P PG PG PG+RG P P R LP GL G H G
Sbjct: 223 PGPPGKNGD-DGEAGKPGRPGERGPPGPQGAR------GLPGTAGLPGMKGHRGFSGLDG 275
Query: 285 QAAQQPTRAVQPSLGIPHVVAEELEHSKPGGGRRSRELRPRYRPRTPWLRTVCRTQSPGG 344
+ G P E+ PG R RP P P G
Sbjct: 276 AKGDAGPAGPKGEPGSPG------ENGAPGQMGPRGLPGERGRPGAP---------GPAG 320
Query: 345 GGGQDPTALGAAALG-TRPPRRRGLPLLTDAPVPRRVRALVQLQLRLHVLGGEGDADLDA 403
G D A G T P G P +G +G+A
Sbjct: 321 ARGNDGATGAAGPPGPTGPAGPPGFP---------------------GAVGAKGEAGPQG 359
Query: 404 TRQAACRDR---EPAPETPARPLALGPLPRPGLRSARPPRQCRGEHRLGPHAPMPSPRCP 460
R + EP P PA A GP PG + G + P R P
Sbjct: 360 PRGSEGPQGVRGEPGPPGPAG--AAGPAGNPGADGQPGAKGANGAPGIAGAPGFPGARGP 417
Query: 461 GEAQGV-----TDGRRASPSAPGGDQDRVSTTPQPTAQPGSGAGPQRPGPTQKRGGRGVR 515
QG G P APG D + +PG PGP + G RG R
Sbjct: 418 SGPQGPGGPPGPKGNSGEPGAPGSKGDTGAK-----GEPGPVGVQGPPGPAGEEGKRGAR 472
Query: 516 VPEGSPARIAFSGRRGGAKAQPMAEAESLGD-----RERRDGGGAAGGGAVAQLRAVGQG 570
G G RGG ++ A+ + ER G A G+ + G+
Sbjct: 473 GEPGPTGLPGPPGERGGPGSRGFPGADGVAGPKGPAGERGSPGPAGPKGSPGEAGRPGEA 532
Query: 571 ALCAAPRDSGPRVCATVESGGIPRDPGGQGHTLPENTWG 609
L A +G P PG G T P G
Sbjct: 533 GLPGAKGLTGS-----------PGSPGPDGKTGPPGPAG 560
Score = 55.5 bits (132), Expect = 1e-07
Identities = 124/482 (25%), Positives = 152/482 (31%), Gaps = 75/482 (15%)
Query: 156 DSGCEALLAGPG-PIQGGGNWELFPRKQCSQ-GRPGLPTRTMPRDTGQPTRTMLWDTGQP 213
D+G PG P + G ++ PR + GRPG P R T G P
Sbjct: 279 DAGPAGPKGEPGSPGENGAPGQMGPRGLPGERGRPGAPGPAGARGNDGATGA----AGPP 334
Query: 214 CVLPQGPAVTPPAFPGVQ----ETLPSLPVAPGAP-GQRGRPSPYSLRVRGPRQDLPHLD 268
P GPA PP FPG E P P P G RG P P P D
Sbjct: 335 G--PTGPA-GPPGFPGAVGAKGEAGPQGPRGSEGPQGVRGEPGPPGPAGAAGPAGNPGAD 391
Query: 269 GLHGAHDHHGL----GHASAQAAQQPTRAVQPSLGIPHVVAEELEHSKPGG-GRRSRELR 323
G GA +G G A+ P+ P G P E PG G +
Sbjct: 392 GQPGAKGANGAPGIAGAPGFPGARGPSGPQGPG-GPPGPKGNSGEPGAPGSKGDTGAKGE 450
Query: 324 PRYRPRTPWLRTVCRTQSPGGGGGQD----------PTALGAAALGTRPPRRRGLPLLTD 373
P Q P G G++ PT L P RG P
Sbjct: 451 PG----------PVGVQGPPGPAGEEGKRGARGEPGPTGLPGPPGERGGPGSRGFPGADG 500
Query: 374 APVP------RRVRALVQLQLRLHVLGGEGDADLDATRQAACRDREPAPETPARPLALGP 427
P R + G G+A L + P P+ P GP
Sbjct: 501 VAGPKGPAGERGSPGPAGPKGSPGEAGRPGEAGLPGAKGLTGSPGSPGPDGKTGPP--GP 558
Query: 428 LPRPGLRSARPPRQCRGEHR-LGPHAPMPSPRCPGEAQGVTDGRRASPSAPGGDQDRVST 486
+ G P RG+ +G P + PG+A G R P PG
Sbjct: 559 AGQDGRPGPPGPPGARGQAGVMGFPGPKGAAGEPGKA-----GERGVPGPPGA------- 606
Query: 487 TPQPTAQPGSGAGPQRPGPTQKRGGRGVRVPEGSPARIAFSGRRGGAKAQPMAEAESLGD 546
P + G PGP G RG + P GSP F G G A P EA G+
Sbjct: 607 -VGPAGKDGEAGAQGPPGPAGPAGERGEQGPAGSP---GFQGLPG--PAGPPGEAGKPGE 660
Query: 547 RERRDGGGAAG-GGAVAQLRAVGQGALCAAPRDSGPRVC-------ATVESGGIPRDPGG 598
+ GA G GA + G+ + P +GPR G P PG
Sbjct: 661 QGVPGDLGAPGPSGARGERGFPGERGVQGPPGPAGPRGANGAPGNDGAKGDAGAPGAPGS 720
Query: 599 QG 600
QG
Sbjct: 721 QG 722
Score = 53.9 bits (128), Expect = 4e-07
Identities = 115/425 (27%), Positives = 134/425 (31%), Gaps = 79/425 (18%)
Query: 217 PQGPAVTPPAFPGVQETLPSLPVAP----GAPGQRGRPSPYS-LRVRGPRQDLPHLDGLH 271
P GPA P E+ PS P P GAPG RG P P GP P DG
Sbjct: 771 PPGPAGAPG---DKGESGPSGPAGPTGARGAPGDRGEPGPPGPAGFAGP----PGADGQP 823
Query: 272 GAHDHHGLGHASAQAAQQ-PTRAVQPSLGIPHVVAEELEHSKPGGGRRSRELRPRYRPRT 330
GA G A A P P I +V A + ++ G P
Sbjct: 824 GAKGEPGDAGAKGDAGPPGPAGPAGPPGPIGNVGAPGAKGARGSAG-------PPGATGF 876
Query: 331 PWLRTVCRTQSPGGGGGQDPTALGAAALGTRPPRRR----GLPLLTDAPVPRRVRALVQL 386
P P G G A G + PR G P P P
Sbjct: 877 PGAAGRVGPPGPSGNAGPPGPPGPAGKEGGKGPRGETGPAGRPGEVGPPGPP-------- 928
Query: 387 QLRLHVLGGEGDADLDATRQAACRDREPAPETPARPLALGPLPR-------PGLR--SAR 437
G G+ A P P+ A + LP PGL S
Sbjct: 929 -------GPAGEKGSPGADGPAGAPGTPGPQGIAGQRGVVGLPGQRGERGFPGLPGPSGE 981
Query: 438 PPRQ----CRGEHRLGPHAPMPSPRC---PGEAQGVTDGRRASPSA---------PGGDQ 481
P +Q GE GP PM P PGE+ GR +P A PG
Sbjct: 982 PGKQGPSGASGER--GPPGPMGPPGLAGPPGES-----GREGAPGAEGSPGRDGSPGAKG 1034
Query: 482 DRVSTTPQ-PTAQPGSGAGPQRPGPTQKRGGRGVRVPEGSPARIAFSGRRGGAKAQ---- 536
DR T P P PG+ P GP K G RG P G + G RG A Q
Sbjct: 1035 DRGETGPAGPPGAPGAPGAPGPVGPAGKSGDRGETGPAGPAGPVGPVGARGPAGPQGPRG 1094
Query: 537 PMAEAESLGDRERRDGGGAAG-GGAVAQLRAVGQGALCAAPRDSGPRVCATVESGGIPRD 595
E GDR + G +G G + G+ A +GPR S G P
Sbjct: 1095 DKGETGEQGDRGIKGHRGFSGLQGPPGPPGSPGEQGPSGASGPAGPR--GPPGSAGAPGK 1152
Query: 596 PGGQG 600
G G
Sbjct: 1153 DGLNG 1157
Score = 48.5 bits (114), Expect = 2e-05
Identities = 118/499 (23%), Positives = 152/499 (30%), Gaps = 84/499 (16%)
Query: 158 GCEALLAGPGPIQGGGNWELFPRKQCSQGRPGLPTRTMPRDTGQPTRTMLWDTGQPCVLP 217
G ++ PGP G P K +G PG P P G P P
Sbjct: 575 GQAGVMGFPGPKGAAGE----PGKAGERGVPGPPGAVGPAGKDGEAGAQ----GPPG--P 624
Query: 218 QGPAVT-----PPAFPGVQETLPSLPVAPGAPGQRGRPS----PYSLRVRGPR------- 261
GPA P PG Q LP G PG+ G+P P L GP
Sbjct: 625 AGPAGERGEQGPAGSPGFQ----GLPGPAGPPGEAGKPGEQGVPGDLGAPGPSGARGERG 680
Query: 262 -------QDLPHLDGLHGAHDHHGLGHASAQAAQQPTRAVQPSLGIPHVVAEELEHSKPG 314
Q P G GA+ G A A Q + G+ + E PG
Sbjct: 681 FPGERGVQGPPGPAGPRGANGAPGNDGAKGDAGAPGAPGSQGAPGLQGMPGERGAAGLPG 740
Query: 315 GGRRSRELRPRYRPRTPWLRTVCRTQSP----GGGGGQDPTALGAAALGTRPPRRRGLPL 370
+ P+ +P V P G G + P RG P
Sbjct: 741 PKGDRGDAGPKGADGSPGKDGVRGLTGPIGPPGPAGAPGDKGESGPSGPAGPTGARGAPG 800
Query: 371 LTDAPVPRRVRALVQLQLRLHVLGGEGD-ADLDATRQAACRDREPAPETPARPLA-LGPL 428
P P G +G+ D A A P P PA P +G +
Sbjct: 801 DRGEPGPPGPAGFAGPPGADGQPGAKGEPGDAGAKGDAG----PPGPAGPAGPPGPIGNV 856
Query: 429 PRPGLRSARPPRQCRGEHRLGPHAPMPSPRCPGEAQGV----TDGRRASPSAPGGDQDRV 484
PG + AR G P + PG A V G P PG
Sbjct: 857 GAPGAKGAR-----------GSAGPPGATGFPGAAGRVGPPGPSGNAGPPGPPGPAGKEG 905
Query: 485 STTPQ----PTAQPGSGAGPQRPGPTQKRGGRGVRVPEGSPAR---IAFSGRRG------ 531
P+ P +PG P PGP ++G G P G+P +G+RG
Sbjct: 906 GKGPRGETGPAGRPGEVGPPGPPGPAGEKGSPGADGPAGAPGTPGPQGIAGQRGVVGLPG 965
Query: 532 --GAKAQPMAEAESLGDRERRDGGGAAGGGAVAQLRAVGQGALCAAPRDSGPRVCATVES 589
G + P S G+ ++ GA+G +G L P +SG E
Sbjct: 966 QRGERGFPGLPGPS-GEPGKQGPSGASGERGPP--GPMGPPGLAGPPGESGREGAPGAEG 1022
Query: 590 G----GIPRDPGGQGHTLP 604
G P G +G T P
Sbjct: 1023 SPGRDGSPGAKGDRGETGP 1041
Score = 46.6 bits (109), Expect = 7e-05
Identities = 53/190 (27%), Positives = 66/190 (34%), Gaps = 15/190 (7%)
Query: 426 GPLPRPGLRSARPPRQCRGEHRLGPHAPMPSPRCPGEAQGV--TDGRRASPSAPGGDQDR 483
G L PG AR R GE G P P P P A G DG + APG +
Sbjct: 665 GDLGAPGPSGARGERGFPGER--GVQGP-PGPAGPRGANGAPGNDGAKGDAGAPGAPGSQ 721
Query: 484 VSTTPQPTAQPGSGAGPQRPGPTQKRGGRGVRVPEGSPARIAFSGRRGGAKAQPMAEAES 543
+ P PG PGP RG G + +GSP + G G P A +
Sbjct: 722 GA--PGLQGMPGERGAAGLPGPKGDRGDAGPKGADGSPGKDGVRGLTG--PIGPPGPAGA 777
Query: 544 LGDRERRDGGGAAGGGAVAQLRAVGQGALCAAPRDSG----PRVCATVESGGIPRDPGGQ 599
GD + + G + G A G P +G P + G P D G +
Sbjct: 778 PGD--KGESGPSGPAGPTGARGAPGDRGEPGPPGPAGFAGPPGADGQPGAKGEPGDAGAK 835
Query: 600 GHTLPENTWG 609
G P G
Sbjct: 836 GDAGPPGPAG 845
Score = 42.0 bits (97), Expect = 0.002
Identities = 117/462 (25%), Positives = 141/462 (30%), Gaps = 74/462 (16%)
Query: 163 LAGP-GPIQGGGNWELFPRKQCSQGRPGLPTRTMPRDTGQPTRTMLWDTGQPCVLPQGPA 221
+AGP GP G+ P +G PG R P + G P L TG P P
Sbjct: 501 VAGPKGPAGERGS----PGPAGPKGSPGEAGR--PGEAGLPGAKGL--TGSPGS-PGPDG 551
Query: 222 VTPPAFPGVQETLPSLPVAPGAPGQRGR---PSPYSLR----------VRGPRQDLPHL- 267
T P P Q+ P P PGA GQ G P P V GP +
Sbjct: 552 KTGPPGPAGQDGRPGPPGPPGARGQAGVMGFPGPKGAAGEPGKAGERGVPGPPGAVGPAG 611
Query: 268 -DGLHGAHDHHGLGHASAQAAQQPTRAVQPSLGIPHVVAEELEHSKPGGGRRSRELRP-- 324
DG GA G + + +Q G+P E KPG +L
Sbjct: 612 KDGEAGAQGPPGPAGPAGERGEQGPAGSPGFQGLPGPAGPPGEAGKPGEQGVPGDLGAPG 671
Query: 325 ----RYRPRTPWLRTVCRTQSPGGGGGQD--PTALGAAALGTRP--PRRRGLPLLTDAPV 376
R P R V P G G + P GA P P +G P L P
Sbjct: 672 PSGARGERGFPGERGVQGPPGPAGPRGANGAPGNDGAKGDAGAPGAPGSQGAPGLQGMPG 731
Query: 377 PRRVRALVQLQLRLHVLGGEGDADLDATRQAACRDREPAPETPARPLALGPLPRPGLRSA 436
R L + G GDA + +D P P GP PG +
Sbjct: 732 ERGAAGLPGPK------GDRGDAGPKGADGSPGKDGVRGLTGPIGPP--GPAGAPGDKGE 783
Query: 437 RPPRQCRGEHRLGPHAPMPSPRCPGEAQGVTDGRRASPSAPGGDQDRVSTTPQPTAQPGS 496
P GP P + PG+ R P PG + P QPG+
Sbjct: 784 SGPS--------GPAGPTGARGAPGD--------RGEPGPPG--PAGFAGPPGADGQPGA 825
Query: 497 GAGPQRPGPTQKRGGRGVRVPEGSPARIAFSGRRGGAKAQPMAEAESLGDRERRDGGGAA 556
P G G G P G P I G G A+ A G
Sbjct: 826 KGEPGDAGAKGDAGPPGPAGPAGPPGPIGNVGAPGAKGARGSAGPP----------GATG 875
Query: 557 GGGAVAQLRAVGQGALCAAPRDSGPRVCATVESGGIPRDPGG 598
GA ++ G P GP A E G PR G
Sbjct: 876 FPGAAGRVGPPGPSGNAGPPGPPGP---AGKEGGKGPRGETG 914
Score = 41.6 bits (96), Expect = 0.002
Identities = 90/362 (24%), Positives = 113/362 (31%), Gaps = 72/362 (19%)
Query: 179 PRKQCSQGRPGLPTRTMPRDTGQPTRTMLWDTGQPCVLPQGPAVTPPAFPGVQETLPSLP 238
P + G PG P ++ G+ R G+P V PP PG S P
Sbjct: 886 PGPSGNAGPPG-PPGPAGKEGGKGPRGETGPAGRP------GEVGPPGPPGPAGEKGS-P 937
Query: 239 VAPGAPGQRGRPSPYSLRVRGPRQDLPHLDGLHGAHDHHGLGHASAQAAQQPTRAVQPSL 298
A G G G P P + ++ + L G G GL S + +Q
Sbjct: 938 GADGPAGAPGTPGPQGI---AGQRGVVGLPGQRGERGFPGLPGPSGEPGKQGPSGASGER 994
Query: 299 GIPHVVAEELEHSKPGGGRRSRELRPRYRPRTPWLRTVCRTQSPGGGGGQDPTALGAAAL 358
G P + PG R P R SPG G + T G A
Sbjct: 995 GPPGPMGPPGLAGPPGESGREGAPGAEGSPG--------RDGSPGAKGDRGET--GPAG- 1043
Query: 359 GTRPPRRRGLPLLTDAPVPRRVRALVQLQLRLHVLGGEGDADLDATRQAACRDREPAPET 418
PP G P AP P + G GD E P
Sbjct: 1044 ---PPGAPGAP---GAPGP------------VGPAGKSGDRG------------ETGPAG 1073
Query: 419 PARPLALGPLPRPGLRSARPPRQCRGE-----------HR-----LGPHAPMPSP--RCP 460
PA P+ GP+ G + PR +GE HR GP P SP + P
Sbjct: 1074 PAGPV--GPVGARGPAGPQGPRGDKGETGEQGDRGIKGHRGFSGLQGPPGPPGSPGEQGP 1131
Query: 461 GEAQGVTDGRRASPSAPGGDQDRVSTTPQPTAQPGSGAGPQRPGPTQKRGGRGVRVPEGS 520
A G R SA +D ++ P P PG GP G G P G
Sbjct: 1132 SGASGPAGPRGPPGSAGAPGKDGLNGLPGPIGPPGPRGRTGDAGPVGPPGPPGPPGPPGP 1191
Query: 521 PA 522
P+
Sbjct: 1192 PS 1193
Score = 33.5 bits (75), Expect = 0.58
Identities = 104/429 (24%), Positives = 127/429 (29%), Gaps = 109/429 (25%)
Query: 130 ASRPYGGHQQGGHDEEADGLVRALLQDSGCEALLAGPGPIQGGGNWELFPRKQCSQGRPG 189
A P Q G E D + G PGPI G P + ++G G
Sbjct: 814 AGPPGADGQPGAKGEPGDAGAKGDAGPPGPAGPAGPPGPIGNVGA----PGAKGARGSAG 869
Query: 190 LPTRT-MPRDTGQPTRTMLWDTGQPCVLPQGPA--VTPPAFPGVQ----------ETLPS 236
P T P G+ V P GP+ PP PG ET P+
Sbjct: 870 PPGATGFPGAAGR-------------VGPPGPSGNAGPPGPPGPAGKEGGKGPRGETGPA 916
Query: 237 LPVAPGAPGQRGRPSPYSLRVRGP--RQDLPHLDGLHGAHDHHGLGHASAQAAQQPTRAV 294
G PG+ G P P GP + P DG GA G + Q
Sbjct: 917 -----GRPGEVGPPGP-----PGPAGEKGSPGADGPAGAPGTPGPQGIAGQRGVVGLPGQ 966
Query: 295 QPSLGIPHVVAEELEHSKPGGGRRSRELRPRYRPRTPWLRTVCRTQSPGGGGGQD--PTA 352
+ G P + E K G S E P P L P G G++ P A
Sbjct: 967 RGERGFPGLPGPSGEPGKQGPSGASGERGPPGPMGPPGLA------GPPGESGREGAPGA 1020
Query: 353 LGAAALGTRPPRRRGLPLLTDAPVPRRVRALVQLQLRLHVLGGEGDADLDATRQAACRDR 412
G+ P R G P G +GD +
Sbjct: 1021 EGS-------PGRDGSP------------------------GAKGDRG-----ETGPAGP 1044
Query: 413 EPAPETPARPLALGPLPRPGLRSARPPRQCRGEHRLGPHAPMPSPRCPGEAQGVTDGRRA 472
AP P P +GP + G R P GP P+ G A G R
Sbjct: 1045 PGAPGAPGAPGPVGPAGKSGDRGETGPA--------GPAGPVGPVGARGPAG--PQGPRG 1094
Query: 473 SPSAPGGDQDR-------VSTTPQPTAQPGSGAGPQRPGPTQKRGGRGVRVPEGS---PA 522
G DR S P PGS P GP+ G G R P GS P
Sbjct: 1095 DKGETGEQGDRGIKGHRGFSGLQGPPGPPGS---PGEQGPSGASGPAGPRGPPGSAGAPG 1151
Query: 523 RIAFSGRRG 531
+ +G G
Sbjct: 1152 KDGLNGLPG 1160
Score = 30.0 bits (66), Expect = 6.5
Identities = 45/164 (27%), Positives = 54/164 (32%), Gaps = 33/164 (20%)
Query: 459 CPGEAQGVTDGRRASPSAPGGDQDRVSTTPQPTAQPGSGAGPQRPGPTQKRGGRGVRVPE 518
CPG V +G P P G + PT Q +G GP G RG R P
Sbjct: 81 CPGAE--VPEGE-CCPVCPDGSES-------PTDQETTGV----EGPKGDTGPRGPRGPA 126
Query: 519 GSPARIAFSGRRG--GAKAQP-----------MAEAESLGDRERRDGGGAAGGGAVAQLR 565
G P R G+ G G P A S G E+ GG + G +
Sbjct: 127 GPPGRDGIPGQPGLPGPPGPPGPPGPPGLGGNFAPQLSYGYDEKSTGGISVPG----PMG 182
Query: 566 AVGQGALCAAPRDSGPRVCATVESGGIPRDPGGQGHTLPENTWG 609
G L P GP+ G P +PG G P G
Sbjct: 183 PSGPRGLPGPPGAPGPQ--GFQGPPGEPGEPGASGPMGPRGPPG 224
>gi|40805823 collagen, type XXII, alpha 1 [Homo sapiens]
Length = 1626
Score = 59.7 bits (143), Expect = 8e-09
Identities = 101/399 (25%), Positives = 129/399 (32%), Gaps = 69/399 (17%)
Query: 158 GCEALLAGPGPIQGGGNWELFPRKQCSQGRPGLPTRTMPRDTGQPTRTMLWDTGQPCVLP 217
G E G ++G P S+G PG+ P +G P D G P
Sbjct: 1012 GSENCALGGQCVKGDRGAPGIPGSPGSRGDPGIGVAGPPGPSGPPG-----DKGSP---- 1062
Query: 218 QGPAVTPPAFPGVQETLPSLPVAPGAPGQRGRPSPYSLRVRGPRQDL------------- 264
+ P FPG Q APG PG+RG P L D+
Sbjct: 1063 --GSRGLPGFPGPQGPA-GRDGAPGNPGERGPPGKPGLSSLLSPGDINLLAKDVCNDCPP 1119
Query: 265 --PHLDGLHGAHDHHGLGHASAQAAQQPTR--AVQPSL-GIPHVVAEELEHSKPGGGRRS 319
P L GL G G+ + + + A P L G P + + + G
Sbjct: 1120 GPPGLPGLPGFKGDKGVPGKPGREGTEGKKGEAGPPGLPGPPGIAGPQGSQGERGADGEV 1179
Query: 320 RELRPRYRPRTPWLRTVCRTQSPGGGGGQDPTALGAAALGTRPPRRRGLPLLTDAPVPRR 379
+ + P P P G G GAA PP +G P P P+
Sbjct: 1180 GQKGDQGHPGVPGFMGPPGNPGPPGADG----IAGAAG----PPGIQGSPGKEGPPGPQG 1231
Query: 380 VRALVQLQLRLHVLGGEGDADLDATRQAACRDREPAPETPARPLALGPLPRPGLRSARPP 439
L + G EG RD +P P P P G PG AR P
Sbjct: 1232 PSGLPGIP------GEEGKEG---------RDGKPGP--PGEPGKAGEPGLPGPEGARGP 1274
Query: 440 RQCRGEHRLGPHAPMPSPRCPGEAQGVTDGRRASPSAPGGDQDRVSTTPQ-------PTA 492
+G + P PR A G+ PG D D T PQ P
Sbjct: 1275 PGFKGHTG---DSGAPGPRGESGAMGLP----GQEGLPGKDGDTGPTGPQGPQGPRGPPG 1327
Query: 493 QPGSGAGPQRPGPTQKRGGRGVRVPEGSPARIAFSGRRG 531
+ GS P PGP+ G +G + GSP F G RG
Sbjct: 1328 KNGSPGSPGEPGPSGTPGQKGSKGENGSPGLPGFLGPRG 1366
Score = 55.8 bits (133), Expect = 1e-07
Identities = 106/452 (23%), Positives = 147/452 (32%), Gaps = 35/452 (7%)
Query: 163 LAGPGPIQGGGNWELFPRKQCSQGRPGLPT-RTMPRDTGQPTRTMLWDTGQPCVLPQGPA 221
+AGP QG + ++ QG PG+P P + G P + P + P
Sbjct: 1163 IAGPQGSQGERGADGEVGQKGDQGHPGVPGFMGPPGNPGPPGADGIAGAAGPPGIQGSPG 1222
Query: 222 VTPPAFPGVQETLPSLPVAPGAPGQRGRPSPYSLRVRGPRQDLPHLDGLHGAHDHHGLGH 281
P P LP +P G G+ G+P P + LP +G G G H
Sbjct: 1223 KEGPPGPQGPSGLPGIPGEEGKEGRDGKPGPPGEPGKAGEPGLPGPEGARGPPGFKG--H 1280
Query: 282 ASAQAAQQPTRAVQPSLGIPHVVAEELEHSKPGGGRRSRELRPRYRPRTPWLRTVCRTQS 341
A P R ++G+P +E K G + P+ PR P + S
Sbjct: 1281 TGDSGAPGP-RGESGAMGLP---GQEGLPGKDGDTGPTGPQGPQ-GPRGP----PGKNGS 1331
Query: 342 PGGGGGQDPTALGAAALGTRPPRRRGLPLLTDAPVPRRVRALVQLQLRLHVLGGEGDADL 401
PG G P+ GLP P + + V G G+
Sbjct: 1332 PGSPGEPGPSGTPGQKGSKGENGSPGLPGFLGPRGPPGEPGEKGVPGKEGVPGKPGEPGF 1391
Query: 402 DATR-QAACRDREPAPETPARPLALGPLPRPGLRSARPPRQCRGEHR-LGPHAPMPSPRC 459
R + + P +P G G P+ GE+ +GP P P
Sbjct: 1392 KGERGDPGIKGDKGPPGGKGQPGDPGIPGHKGHTGLMGPQGLPGENGPVGPPGPPGQPGF 1451
Query: 460 PG---EAQGVTDGRRASPSAPGGDQDR----VSTTPQPTAQPGSGAGPQRPGPTQKRGGR 512
PG E+ + RR G + + P S P PGP K G
Sbjct: 1452 PGLRGESPSMETLRRLIQEELGKQLETRLAYLLAQMPPAYMKSSQGRPGPPGPPGKDGLP 1511
Query: 513 GVRVPEGSPARIAFSGRRGGAKAQPMAEAESLGDRERRDGGGAAGGGAVAQLRAVGQGAL 572
G P G P R G G P G+R + GA G G ++ G +
Sbjct: 1512 GRAGPMGEPGRPGQGGLEG-----PSGPIGPKGERGAKGDPGAPGVGLRGEM---GPPGI 1563
Query: 573 CAAPRDSGPRVCATVESGGIPRDPGGQGHTLP 604
P + G G+P PG QG T P
Sbjct: 1564 PGQPGEPG------YAKDGLPGIPGPQGETGP 1589
Score = 48.9 bits (115), Expect = 1e-05
Identities = 99/402 (24%), Positives = 139/402 (34%), Gaps = 75/402 (18%)
Query: 164 AGPGPIQGGGNWELFPRKQCSQGRPGLPTRT-------MPRDTGQPTRTMLWDTGQPCVL 216
AGP IQG E P Q G PG+P P G+P + G+P +
Sbjct: 1212 AGPPGIQGSPGKEGPPGPQGPSGLPGIPGEEGKEGRDGKPGPPGEPGKA-----GEPGLP 1266
Query: 217 PQGPAVTPPAFPGV-----------QETLPSLPVAPGAPGQRGRPSPYSLR-VRGPRQDL 264
A PP F G + LP G PG+ G P + +GPR
Sbjct: 1267 GPEGARGPPGFKGHTGDSGAPGPRGESGAMGLPGQEGLPGKDGDTGPTGPQGPQGPRGP- 1325
Query: 265 PHLDGLHGAHDHHGLGHASAQAAQQPTRAVQPSLGIPHVVAEELEHSKPGG-GRRSRELR 323
G +G+ G S Q+ ++ S G+P + +PG G +E
Sbjct: 1326 ---PGKNGSPGSPGEPGPSGTPGQKGSKGENGSPGLPGFLGPRGPPGEPGEKGVPGKEGV 1382
Query: 324 PRYRPRTPWLRT------VCRTQSPGGGGGQ--DPTALG----AAALGTR---------- 361
P +P P + + + P GG GQ DP G +G +
Sbjct: 1383 PG-KPGEPGFKGERGDPGIKGDKGPPGGKGQPGDPGIPGHKGHTGLMGPQGLPGENGPVG 1441
Query: 362 ---PPRRRGLP-LLTDAPVPRRVRALVQLQL--RLHVLGGEGDADLDATRQAACRDREPA 415
PP + G P L ++P +R L+Q +L +L A + + + R
Sbjct: 1442 PPGPPGQPGFPGLRGESPSMETLRRLIQEELGKQLETRLAYLLAQMPPAYMKSSQGRPGP 1501
Query: 416 PETPAR---PLALGPLPRPGLRSARPPRQCRGEHRLGPHAPMPSPRCPGE--AQGV---- 466
P P + P GP+ PG P Q E GP P G+ A GV
Sbjct: 1502 PGPPGKDGLPGRAGPMGEPGR-----PGQGGLEGPSGPIGPKGERGAKGDPGAPGVGLRG 1556
Query: 467 ---TDGRRASPSAPGGDQDRVSTTPQPTAQPGSGAGPQRPGP 505
G P PG +D + P P + G P PGP
Sbjct: 1557 EMGPPGIPGQPGEPGYAKDGLPGIPGPQGETGPAGHPGLPGP 1598
Score = 47.0 bits (110), Expect = 5e-05
Identities = 118/469 (25%), Positives = 143/469 (30%), Gaps = 85/469 (18%)
Query: 185 QGRPGLPTRTMPRDTGQPTRTMLWDTGQPCVL-PQGPA-----VTPPAFPGV---QETLP 235
+G G P + P DTGQ R G V PQG PP PG QE L
Sbjct: 604 RGLDGFPGK--PGDTGQQGRP-----GPSGVAGPQGEKGDVGPAGPPGVPGSVVQQEGLK 656
Query: 236 SLPVAPGAPGQRGRPSPYSLRVRGP-----RQDLPHLDGLHGAHDHHGL----GHASAQA 286
APG G +G P P RGP R P L GL G G G Q
Sbjct: 657 GEQGAPGPRGHQGAPGPPG--ARGPIGPEGRDGPPGLQGLRGKKGDMGPPGIPGLLGLQG 714
Query: 287 AQQPTRAVQP-----SLGIPHVVAEELEHSKPGGGRRSRELRPRYRPRTPWLRTVCRTQS 341
P P S G+P + + PG + P P P + +
Sbjct: 715 PPGPPGVPGPPGPGGSPGLPGEIGFPGKPGPPGPTGPPGKDGPNGPPGPPGTKGEPGERG 774
Query: 342 PGGGGGQDPTA--LGAAALGTRPPRR--RGLPLLTDAPVPRRVRALVQLQLRLHVLGGEG 397
G G+ +G L RP + GLP P R + + L + G +G
Sbjct: 775 EDGLPGKPGLRGEIGEQGLAGRPGEKGEAGLPGAPGFPGVRGEKGDQGEKGELGLPGLKG 834
Query: 398 DADLDATRQAACRDREPAPETPARPLALGPLPRPGLRSARPPRQCRGEHRLGPHAPMPSP 457
D E PA P L PG S P R GP P
Sbjct: 835 DRG------------EKGEAGPAGPPGL-----PGTTSLFTPHP-RMPGEQGPKGEKGDP 876
Query: 458 RCPGEAQGVTDGRRASPSAPGGD-----QDRVSTTPQPTAQPGSGAGPQRPGPTQKRGGR 512
PGE P P G Q+ P PG+ PGP+ G
Sbjct: 877 GLPGEPGLQGRPGELGPQGPTGPPGAKGQEGAHGAPGAAGNPGAPGHVGAPGPSGPPGSV 936
Query: 513 GVRVPEGSPARIAFSGRRGGAKAQPMAEAESLGDRERRDGGGAAGGGAVAQLRAVGQGAL 572
G G+P + G +G A E S G R GA G G+ L
Sbjct: 937 GAPGLRGTPGKDGERGEKGAA-----GEEGSPGPVGPRGDPGAPGLPGPPGKGKDGEPGL 991
Query: 573 CAAPRDSGP----RVCATVESG-----------------GIPRDPGGQG 600
+P GP C V GIP PG +G
Sbjct: 992 RGSPGLPGPLGTKAACGKVRGSENCALGGQCVKGDRGAPGIPGSPGSRG 1040
Score = 40.0 bits (92), Expect = 0.006
Identities = 100/400 (25%), Positives = 135/400 (33%), Gaps = 75/400 (18%)
Query: 184 SQGRPGLPTRTMPRDTGQPTRTMLWDTGQPCVLPQGPAVTP--PAFPGV----QETLPSL 237
S G PGL T +D + + + G P P GP P P PG ++ P L
Sbjct: 935 SVGAPGL-RGTPGKDGERGEKGAAGEEGSPG--PVGPRGDPGAPGLPGPPGKGKDGEPGL 991
Query: 238 PVAPGAPGQRGRPSPYSLRVRGPR------------QDLPHLDGLHGAHDHHGLGHASAQ 285
+PG PG G + +VRG + P + G G+ G+G A
Sbjct: 992 RGSPGLPGPLGTKAACG-KVRGSENCALGGQCVKGDRGAPGIPGSPGSRGDPGIGVAGPP 1050
Query: 286 AAQQPT--RAVQPSLGIPHVVAEELEHSKPGGGRRSRELRPRYRPRTPWLRTVCRTQSPG 343
P + S G+P + + G E P P P L ++ SPG
Sbjct: 1051 GPSGPPGDKGSPGSRGLPGFPGPQGPAGRDGAPGNPGERGP---PGKPGLSSLL---SPG 1104
Query: 344 GGGGQDPTALGAAALGTRPPRRRGLPLLT----DAPVPRRVRALVQLQLRLHVLGGEGDA 399
D L PP GLP L D VP + R G +G+A
Sbjct: 1105 -----DINLLAKDVCNDCPPGPPGLPGLPGFKGDKGVPGKPG-------REGTEGKKGEA 1152
Query: 400 DLDATRQAACRDREPAPETPARPLALGPLPRPGLRSARPPRQCRGEHRL----GPHAPMP 455
P P P GP G R A +G+ G P
Sbjct: 1153 G--------------PPGLPGPPGIAGPQGSQGERGADGEVGQKGDQGHPGVPGFMGPPG 1198
Query: 456 SPRCPGEAQGVTD-----GRRASPS--APGGDQ--DRVSTTPQPTAQPGSGAGPQRPGPT 506
+P PG A G+ G + SP P G Q + P + G P PG
Sbjct: 1199 NPGPPG-ADGIAGAAGPPGIQGSPGKEGPPGPQGPSGLPGIPGEEGKEGRDGKPGPPGEP 1257
Query: 507 QKRGGRGVRVPEGSPARIAFSGRRGGAKAQ-PMAEAESLG 545
K G G+ PEG+ F G G + A P E+ ++G
Sbjct: 1258 GKAGEPGLPGPEGARGPPGFKGHTGDSGAPGPRGESGAMG 1297
Score = 38.9 bits (89), Expect = 0.014
Identities = 53/201 (26%), Positives = 70/201 (34%), Gaps = 31/201 (15%)
Query: 424 ALGPLPRPGLRSARPPRQCRGEHRLGPHA------------PMPSPRCPGEAQGVTDGRR 471
A+GP+ PG P+ +G+ +GP P P R + G
Sbjct: 503 AIGPVGAPG------PKGEKGDVGIGPFGQGEKGEKGSLGLPGPPGRDGSKGMRGEPGEL 556
Query: 472 ASPSAPGGDQDRVSTTPQ-PTAQPGSGAGPQRPGPTQKRGGRGVRVPEGSPARIAFSGRR 530
P PG R PQ P PG PG +RG +G R +G F G+
Sbjct: 557 GEPGLPGEVGMR---GPQGPPGLPGPPGRVGAPGLQGERGEKGTRGEKGERGLDGFPGKP 613
Query: 531 G--GAKAQPMAEAESLGDRERRDGGGAAGGGAVAQLRAVGQGALCAAPRDSGPRVCATVE 588
G G + +P + E+ D G A G + V Q L GPR
Sbjct: 614 GDTGQQGRPGPSGVAGPQGEKGDVGPAGPPGVPGSV--VQQEGLKGEQGAPGPR-----G 666
Query: 589 SGGIPRDPGGQGHTLPENTWG 609
G P PG +G PE G
Sbjct: 667 HQGAPGPPGARGPIGPEGRDG 687
>gi|188536004 zinc finger protein 469 [Homo sapiens]
Length = 3925
Score = 58.5 bits (140), Expect = 2e-08
Identities = 97/351 (27%), Positives = 121/351 (34%), Gaps = 98/351 (27%)
Query: 199 TGQPTRTMLWDTGQPCVLPQGPAVTPPAFPGVQETLPSLPVAPGAPG--QRGRPSPYSLR 256
+G P ++ T + P PA TP P P PG G RGRP SL
Sbjct: 881 SGHPLKSKAGVTPESKAPPPLPAATPD---------PQTP-RPGDRGCPARGRPKTRSLG 930
Query: 257 VRGPRQDLPHLDGLHGAHDHHGLGHASAQAAQQPTRAVQPSLGIPHVVAE-ELEHSKPGG 315
+ D P +Q R Q L + + E S GG
Sbjct: 931 LAPTEADAP-------------------SQGRQQRRGKQLKLFRKDLDSGGAAEGSGSGG 971
Query: 316 GRRSRELRPRY----------RPRTPWLRTVCRTQSPGGGGGQDPTALGAAALG--TRPP 363
G R+ LRPR RPR P RTQ+PG P AAAL TR
Sbjct: 972 GGRASGLRPRRNDGLGERPPPRPRRP------RTQAPGSRADPAPRVPRAAALPEETRSS 1025
Query: 364 RRRGLPLLTDAPVPRRVRA----------LVQLQLRLHVLGGEGDADLDATRQAACRDRE 413
RRR LP D P R+ R +VQ + RL +++ D +
Sbjct: 1026 RRRRLPPRKD-PRKRKARGGAWGKELILKIVQQKNRLREYDFASESE---------EDEQ 1075
Query: 414 PAPETPARPLALGPLPRPGLRSARPPRQCRGEHRL--GPHAPMPS-PRCPGEAQGVTDGR 470
P P P G R R + R E L GP P PR + DG
Sbjct: 1076 PPPRGP------------GFRGRRGRGEKRKEVELTQGPREDEPQKPRKAARQEAGGDGA 1123
Query: 471 RASPSAPGGDQDRVSTTPQPTAQPGSGAGPQRPGPTQKRGGRGVRVPEGSP 521
A+P PGG ++PG G PQ GP++ G EG P
Sbjct: 1124 PANPEEPGG------------SRPGPGRSPQARGPSRSL-ETGAAAREGGP 1161
Score = 38.9 bits (89), Expect = 0.014
Identities = 52/202 (25%), Positives = 75/202 (37%), Gaps = 37/202 (18%)
Query: 396 EGDADLDATRQAACRDREPAPETPARPLALGPLPRPGLRSARPPRQCRG-EHRLGPHAPM 454
+G A A Q++ +DR A TP++ L PR + S P RG E+ + P P
Sbjct: 3639 KGSATKPAGCQSSSKDRSAA-STPSKALKFPVHPRKAVGSLAPGELARGTENGMKPATPK 3697
Query: 455 PSPRCPGEAQGVTDGRRASPSAPGGDQDRVSTTPQPTAQPGSGAGPQRPG---------- 504
P PS+ G S +P+P + G G+ PQ
Sbjct: 3698 AKP---------------GPSSQG------SGSPRPGTKTGGGSQPQPASGQLQSETATT 3736
Query: 505 PTQKRGGRGVRVPEGSPARI-AFSGRRGGAKAQPMAEAESLGDRERRDGGGAAGGGAV-- 561
P + PE PAR A S +G +A SLG +E+ + G V
Sbjct: 3737 PAKPSFPSRSPAPERLPARAQAKSCTKGPREAGEQGPHGSLGPKEKGESSTKRKKGQVPG 3796
Query: 562 -AQLRAVGQGALCAAPRDSGPR 582
A+ +VG + D PR
Sbjct: 3797 PARSESVGSFGRAPSAPDKPPR 3818
Score = 33.5 bits (75), Expect = 0.58
Identities = 87/381 (22%), Positives = 126/381 (33%), Gaps = 105/381 (27%)
Query: 205 TMLWDTGQPCVLPQGPAVTPPAFPGVQETLPSLPVAPGAP---------GQRGRPSPYSL 255
T L D G P P+ +P + G + L + PV G+R P P+ L
Sbjct: 3266 TALADAGSPGPPRTTPSPSPDPWAGGEPLLQATPVHEACKDPSRDCHHCGKRF-PKPFKL 3324
Query: 256 R--------------VRGPR------QDLPHLDGLHGAHDHHGLGHASAQAAQ---QPTR 292
+ R PR + L HL G HG + L H A + R
Sbjct: 3325 QRHLAVHSPQRVYLCPRCPRVYPEHGELLAHLGGAHGLLERPELQHTPLYACELCATVMR 3384
Query: 293 AVQPSLGIP---HVVAEELEHSKP-----GGGRRSRELRPRYRPRTPWLRTVC------- 337
++ S + A++ + + GGR+ R RP P +
Sbjct: 3385 IIKKSFACSSCNYTFAKKEQFDRHMNKHLRGGRQPFAFRGVRRPGAPGQKARALEGTLPS 3444
Query: 338 ---RTQSPGG--GGGQDPTALGAAALGTRPPRRRGLPLLTDAPVPRRVRALVQLQLRLHV 392
R PG G G+D RPP R P+L++ +P
Sbjct: 3445 KRRRVAMPGSAPGPGED-----------RPPPRGSSPILSEGSLP--------------- 3478
Query: 393 LGGEGDADLDATRQAACRDREPAPETPARPLALGPLPRPGLRSARPPRQCRGEHRLGPH- 451
A L + A + PET RP + P+ P +R P H+ P
Sbjct: 3479 ------ALLHLCSEVAPSTTKGWPETLERP--VDPVTHP-IRGCELP----SNHQECPPP 3525
Query: 452 --APMPSPRCPGEAQGVTDGRRASPSAPGGDQDRVSTTPQPTAQPGSGAGPQRPGPTQKR 509
+P P+ G DG P + + +P P Q G P P
Sbjct: 3526 SLSPFPAALADGRGDCALDGALERP-----ENEASPGSPGPLLQQALPLGASLPRP---- 3576
Query: 510 GGRGVRVPEGSPARIAFSGRR 530
G RG + EG A + FSG+R
Sbjct: 3577 GARG-QDAEGKRAPLVFSGKR 3596
Score = 33.5 bits (75), Expect = 0.58
Identities = 67/309 (21%), Positives = 101/309 (32%), Gaps = 64/309 (20%)
Query: 243 APGQRGRPSPYSLRVRGPRQDLPHLDGLHGAHDHHGLGHASAQAAQQP----------TR 292
APG RGR +P + Q + H + G +A +P +
Sbjct: 3598 APGARGRCAPDHFQEDHLLQKEKEVSSSHMVSEGGPRGTFHKGSATKPAGCQSSSKDRSA 3657
Query: 293 AVQPSLGIPHVVAEELEHSKPGGGRRSRELRPRYRPRTPWLRTVCRTQSPG--------G 344
A PS + V G +R +P TP + +Q G G
Sbjct: 3658 ASTPSKALKFPVHPRKAVGSLAPGELARGTENGMKPATPKAKPGPSSQGSGSPRPGTKTG 3717
Query: 345 GGGQDPTALGAAALGTRP-PRRRGLPLLTDAPVPRRVRALVQLQL------RLHVLGGEG 397
GG Q A G T P + P + +P P R+ A Q + G G
Sbjct: 3718 GGSQPQPASGQLQSETATTPAKPSFP--SRSPAPERLPARAQAKSCTKGPREAGEQGPHG 3775
Query: 398 DADLDATRQAACRDREPAPETPARPLALGPLPRPGLRSARPPRQCRGEHRLGPHAPMPSP 457
+++ + ++ PAR ++G R P AP P
Sbjct: 3776 SLGPKEKGESSTKRKKGQVPGPARSESVGSFGR------------------APSAPDKPP 3817
Query: 458 RCPGEAQGVTDGRRASPSAPGGDQDRVSTTPQPTAQ-----PGSGAGPQRPGPTQKRGGR 512
R P ++A+PS + T P+P +Q P S PG TQ++
Sbjct: 3818 RTP--------RKQATPSRV------LPTKPKPNSQNKPRPPPSEQRKAEPGHTQRKDRL 3863
Query: 513 GVRVPEGSP 521
G P+G P
Sbjct: 3864 GKAFPQGRP 3872
Score = 32.7 bits (73), Expect = 1.00
Identities = 59/238 (24%), Positives = 75/238 (31%), Gaps = 56/238 (23%)
Query: 285 QAAQQPTRAVQPSLGIPHVVAEELEHSKPGGGRRSRELRPRYRPRT--------PWLRTV 336
Q A P QP L + ++ GG+ P +PR P LR
Sbjct: 22 QVASSPGHPSQPPLEDNTPATRTTKGAREAGGQAQAMELPEAQPRQARDGELKPPSLRGQ 81
Query: 337 CRTQSPGGGGGQDPTALGAAALGTRPPRRRGLPLLTDAPVPRRVRALVQLQLRLHVLGGE 396
+ +PG G PP R PL + + R + L +
Sbjct: 82 APSSTPGKRGSPQT-----------PPGRS--PLQAPSRLAGRAEGSPPQRYILGIASSR 128
Query: 397 GDADLDATRQAACRDREPAPE--TPARPLALGPLPRPGL--RSARPPRQCRGEHRLGPHA 452
LD T + + PE TP P PL RPGL A+P + G HR
Sbjct: 129 TKPTLDETPENPQLEAAQLPEVDTPQGPGTGAPL-RPGLPRTEAQPAAEELGFHRCFQEP 187
Query: 453 PMPSPRCPGEAQGVTDGRRASPSAPGGDQDRVSTTPQPTAQPGSGAGPQRPGPTQKRG 510
P T SPSA TP+P A PGP Q RG
Sbjct: 188 P----------SSFTSTNYTSPSA----------TPRPPA----------PGPPQSRG 215
>gi|206597445 alpha 1 type XVIII collagen isoform 3 precursor [Homo
sapiens]
Length = 1751
Score = 57.8 bits (138), Expect = 3e-08
Identities = 121/453 (26%), Positives = 139/453 (30%), Gaps = 88/453 (19%)
Query: 166 PGPIQGGGNWELFPRKQCSQGRPGLPTRTMPRDTGQPTRTMLWDTGQPCVLPQGPAVTPP 225
PGP G P C G PGLP P P Q PQGP P
Sbjct: 763 PGPPGRAGP----PGSPCLPGPPGLPCPVSPLGPAGPAL-------QTVPGPQGP----P 807
Query: 226 AFPGVQETLPSLPVAPGAPGQRGRPSPYSLRVRGPR--QDLPHLDGLHGAHDHHGLGHAS 283
PG T P PG PG+ G+P GP+ P G G G+G
Sbjct: 808 GPPGRDGT-PGRDGEPGDPGEDGKPGD-----TGPQGFPGTPGDVGPKGDKGDPGVGERG 861
Query: 284 AQAAQQPTRAVQPSLGIPHVVAEELEHSKPGGGRRSRELRPRYRPRTPWLRTVCRTQ-SP 342
Q P PS + ++E S GG + PR P P V P
Sbjct: 862 PPGPQGPPGPPGPSFRHDKLTFIDMEGSGFGGDLEALR-GPRGFPGPPGPPGVPGLPGEP 920
Query: 343 GGGGGQDPTALGAAALGTRPPRR--RGLPLLTDAPVPRRVRALVQLQLRLHVLGGEGDAD 400
G G G A L P R G P L P P
Sbjct: 921 GRFGVNSSDVPGPAGLPGVPGREGPPGFPGLPGPPGP----------------------- 957
Query: 401 LDATRQAACRDREPAPETPARPLALGPLPRP---GLRSARPPRQCRGEHRL----GPHAP 453
RE P + +LG P G + A P RGE L GP P
Sbjct: 958 ---------PGREGPPGRTGQKGSLGEAGAPGHKGSKGAPGPAGARGESGLAGAPGPAGP 1008
Query: 454 -----MPSPRCPGEAQGVTDGRRASPSAPGGDQDRVSTTPQ-PTAQPGSGAGPQRPGPTQ 507
P P PG G D P R + PQ P PG P PG
Sbjct: 1009 PGPPGPPGPPGPGLPAGFDD--MEGSGGPFWSTARSADGPQGPPGLPGLKGDPGVPGLPG 1066
Query: 508 KRGGRGVRVPEGSPARIAFSGRRGGAKAQPMAEAESLGDRERRDGGGAAGGGAVAQLRAV 567
+G G +G P GR G A Q GDR R G G V
Sbjct: 1067 AKGEVGA---DGVPGFPGLPGREGIAGPQ-----GPKGDRGSRGEKGDPGKD------GV 1112
Query: 568 GQGALCAAPRDSGPRVCATVESGGIPRDPGGQG 600
GQ L P GP V + + G + PG +G
Sbjct: 1113 GQPGLPGPPGPPGPVVYVSEQDGSVLSVPGPEG 1145
Score = 44.7 bits (104), Expect = 3e-04
Identities = 65/230 (28%), Positives = 79/230 (34%), Gaps = 59/230 (25%)
Query: 410 RDREPA-PETPARPLALGPLPRPGLRSARPPRQCRGEHRLG---PHAPMPSPRCPG---- 461
RD EP P +P GP PG P+ +G+ +G P P P PG
Sbjct: 818 RDGEPGDPGEDGKPGDTGPQGFPGTPGDVGPKGDKGDPGVGERGPPGPQGPPGPPGPSFR 877
Query: 462 ---------EAQG------VTDGRRASPSAPG--------GDQDRV----STTPQPTAQP 494
E G G R P PG G+ R S P P P
Sbjct: 878 HDKLTFIDMEGSGFGGDLEALRGPRGFPGPPGPPGVPGLPGEPGRFGVNSSDVPGPAGLP 937
Query: 495 GSGAGPQRPGPTQKRGGRGVRVPEGSPARIAFSGRRGGAKAQPMAEAESLGDRERRDGGG 554
G P R GP G G+ P G P R GR G + + EA + G + + G
Sbjct: 938 GV---PGREGPP---GFPGLPGPPGPPGREGPPGRTG--QKGSLGEAGAPGHKGSKGAPG 989
Query: 555 AAGGGAVAQLRAVGQGALCAAPRDSGPRVCATVESGGIPRDPGGQGHTLP 604
AG A G+ L AP +GP G P PG G LP
Sbjct: 990 PAG--------ARGESGLAGAPGPAGP--------PGPPGPPGPPGPGLP 1023
Score = 43.1 bits (100), Expect = 7e-04
Identities = 103/383 (26%), Positives = 124/383 (32%), Gaps = 74/383 (19%)
Query: 185 QGRPGLPTRTMPR-DTGQPTRTMLWDTGQPCVLPQGPAVTP----------------PAF 227
QG PG P P+ D G P + + G P PQGP P F
Sbjct: 837 QGFPGTPGDVGPKGDKGDPG---VGERGPPG--PQGPPGPPGPSFRHDKLTFIDMEGSGF 891
Query: 228 PGVQETL---------PSLPVAPGAPGQRGRPSPYSLRVRGPRQDLPHLDGLHGAHDHHG 278
G E L P P PG PG+ GR S V GP LP + G G G
Sbjct: 892 GGDLEALRGPRGFPGPPGPPGVPGLPGEPGRFGVNSSDVPGP-AGLPGVPGREGPPGFPG 950
Query: 279 LGHASAQAAQQ--PTRAVQP-SLGIPHVVAEELEHSKPG--GGRRSRELRPRYRPRTPWL 333
L ++ P R Q SLG + PG G R L P P
Sbjct: 951 LPGPPGPPGREGPPGRTGQKGSLGEAGAPGHKGSKGAPGPAGARGESGLAGAPGPAGP-- 1008
Query: 334 RTVCRTQSPGGGGGQDPTALGAAALGTRPPRRRGLPLLT---DAPVPRRVRALVQLQLRL 390
PG G P G A G G P + A P+ L L+
Sbjct: 1009 --------PGPPGPPGPPGPGLPA-GFDDMEGSGGPFWSTARSADGPQGPPGLPGLK--- 1056
Query: 391 HVLGGEGDADLDATRQAACRDREPA-PETPARPLALGPLPRPGLRSARPPRQCRGEHRLG 449
G G L + D P P P R GP G R +R + G+ +G
Sbjct: 1057 ---GDPGVPGLPGAKGEVGADGVPGFPGLPGREGIAGPQGPKGDRGSRGEKGDPGKDGVG 1113
Query: 450 -PHAPMPSPRCPGEAQGVTDGRRASPSAPGGDQDRVSTTPQPTAQPGSGAGPQRPGPTQK 508
P P P P PG V++ + S PG P +PG P GP
Sbjct: 1114 QPGLPGP-PGPPGPVVYVSEQDGSVLSVPG-----------PEGRPGFAGFPGPAGPKGN 1161
Query: 509 RGGRGVRVPEGSPARIAFSGRRG 531
G +G R GSP G G
Sbjct: 1162 LGSKGER---GSPGPKGEKGEPG 1181
Score = 42.7 bits (99), Expect = 0.001
Identities = 105/466 (22%), Positives = 141/466 (30%), Gaps = 105/466 (22%)
Query: 158 GCEALLAGPGPIQGGGNWELFPRKQCSQGRPGLPTRTMPR--DTGQPTRTMLWDTGQPCV 215
G L PGP G G PG P +P D + + W T +
Sbjct: 995 GESGLAGAPGPAGPPG----------PPGPPGPPGPGLPAGFDDMEGSGGPFWSTARSAD 1044
Query: 216 LPQGPAVTPPAFPGVQETLPSLPVAPGAPGQRGRPSPYSLRVRGPRQDLPHLDGLHGAHD 275
PQGP P PG++ P +P PGA G+ G R+ + G G
Sbjct: 1045 GPQGP----PGLPGLKGD-PGVPGLPGAKGEVGADGVPGFPGLPGREGIAGPQGPKGDRG 1099
Query: 276 HHG-LGHASAQAAQQPTRAVQPSLGIPHVVAEELEHSK---------------PGGGRRS 319
G G QP P P V E + S PG
Sbjct: 1100 SRGEKGDPGKDGVGQPGLPGPPGPPGPVVYVSEQDGSVLSVPGPEGRPGFAGFPGPAGPK 1159
Query: 320 RELRPRYRPRTPWLRTVCRTQSPGGGGGQDPTALGAAALGTR-PPRRRGLPLLTDAPVPR 378
L + +P + PG D ALG A G + P RG P P
Sbjct: 1160 GNLGSKGERGSPGPKG--EKGEPGSIFSPDGGALGPAQKGAKGEPGFRGPPGPYGRP--- 1214
Query: 379 RVRALVQLQLRLHVLGGEGDADLDATRQAACRDREPAPETPARPLALGPLPRPGLRSARP 438
G +G+ P RP RPG+ +
Sbjct: 1215 ---------------GYKGEIGF-----------------PGRP------GRPGMNGLKG 1236
Query: 439 PRQCRGEHRLG-PHAPMPSPRCPGEAQGVTDGRRASPSAPGGDQDRVSTTPQPTAQPGSG 497
+ G+ LG MP P P P P G S +++PG
Sbjct: 1237 EKGEPGDASLGFGMRGMPGPPGP-----------PGPPGPPGTPVYDSNVFAESSRPGPP 1285
Query: 498 AGPQRPGPTQKRGGRGVRVPEGSPARIAFSGRRGGAKAQPMAEAESLGDRERRDGGGAAG 557
P GP +G +G P G P + F + +A+ E GD ++ G G
Sbjct: 1286 GLPGNQGPPGPKGAKGEVGPPGPPGQFPFDFLQ--LEAEMKGEKGDRGDAGQKGERGEPG 1343
Query: 558 GGAVAQLRAVGQGALCAAPRDSGPRVCATVESGGIPRDPGGQGHTL 603
GG +L P GPR G P PG +G ++
Sbjct: 1344 GGGFF------GSSLPGPPGPPGPR--------GYPGIPGPKGESI 1375
Score = 37.0 bits (84), Expect = 0.053
Identities = 26/72 (36%), Positives = 32/72 (44%), Gaps = 8/72 (11%)
Query: 179 PRKQCSQGRPGLPTRTMPRDTGQPTRTMLWDTGQPCVLPQGPAVTPPAFPGVQETLPSLP 238
P+ + +G+PG P P G R G P P GP PP+FPG S+P
Sbjct: 1370 PKGESIRGQPGPPGPQGPPGIGYEGRQ-----GPPG--PPGPP-GPPSFPGPHRQTISVP 1421
Query: 239 VAPGAPGQRGRP 250
PG PG G P
Sbjct: 1422 GPPGPPGPPGPP 1433
Score = 36.2 bits (82), Expect = 0.090
Identities = 35/123 (28%), Positives = 44/123 (35%), Gaps = 8/123 (6%)
Query: 405 RQAACRDREPAPETPARPLALGPLPRPGLRSARPPRQCRGEHRLGPHAP----MPSPRCP 460
++ + ++ P P P GP P L PP LGP P +P P+ P
Sbjct: 749 KEGGLKGQKGEPGVPGPPGRAGPPGSPCLPG--PPGLPCPVSPLGPAGPALQTVPGPQGP 806
Query: 461 GEAQGV--TDGRRASPSAPGGDQDRVSTTPQPTAQPGSGAGPQRPGPTQKRGGRGVRVPE 518
G T GR P PG D T PQ GP+ G RG P+
Sbjct: 807 PGPPGRDGTPGRDGEPGDPGEDGKPGDTGPQGFPGTPGDVGPKGDKGDPGVGERGPPGPQ 866
Query: 519 GSP 521
G P
Sbjct: 867 GPP 869
Score = 33.5 bits (75), Expect = 0.58
Identities = 29/91 (31%), Positives = 33/91 (36%), Gaps = 11/91 (12%)
Query: 445 EHRLGPHAPMPSPRCPGEAQGVTDGRRASPSAPGGDQDRVSTTPQPTAQPGSGAGPQRP- 503
E +GP A P E R PS+PG T P PT P S P P
Sbjct: 146 ETPVGPLALAGPSSTPQENGTTLWPSRGIPSSPGAHTTEAGTLPAPTPSPPSLGRPWAPL 205
Query: 504 -GPTQKRGGRGVRVPEGSPARIAFSGRRGGA 533
GP+ VP S R + S GGA
Sbjct: 206 TGPS---------VPPPSSGRASLSSLLGGA 227
>gi|110611233 alpha 1 type XVIII collagen isoform 2 precursor [Homo
sapiens]
Length = 1336
Score = 57.8 bits (138), Expect = 3e-08
Identities = 121/453 (26%), Positives = 139/453 (30%), Gaps = 88/453 (19%)
Query: 166 PGPIQGGGNWELFPRKQCSQGRPGLPTRTMPRDTGQPTRTMLWDTGQPCVLPQGPAVTPP 225
PGP G P C G PGLP P P Q PQGP P
Sbjct: 348 PGPPGRAGP----PGSPCLPGPPGLPCPVSPLGPAGPAL-------QTVPGPQGP----P 392
Query: 226 AFPGVQETLPSLPVAPGAPGQRGRPSPYSLRVRGPR--QDLPHLDGLHGAHDHHGLGHAS 283
PG T P PG PG+ G+P GP+ P G G G+G
Sbjct: 393 GPPGRDGT-PGRDGEPGDPGEDGKPGD-----TGPQGFPGTPGDVGPKGDKGDPGVGERG 446
Query: 284 AQAAQQPTRAVQPSLGIPHVVAEELEHSKPGGGRRSRELRPRYRPRTPWLRTVCRTQ-SP 342
Q P PS + ++E S GG + PR P P V P
Sbjct: 447 PPGPQGPPGPPGPSFRHDKLTFIDMEGSGFGGDLEALR-GPRGFPGPPGPPGVPGLPGEP 505
Query: 343 GGGGGQDPTALGAAALGTRPPRR--RGLPLLTDAPVPRRVRALVQLQLRLHVLGGEGDAD 400
G G G A L P R G P L P P
Sbjct: 506 GRFGVNSSDVPGPAGLPGVPGREGPPGFPGLPGPPGP----------------------- 542
Query: 401 LDATRQAACRDREPAPETPARPLALGPLPRP---GLRSARPPRQCRGEHRL----GPHAP 453
RE P + +LG P G + A P RGE L GP P
Sbjct: 543 ---------PGREGPPGRTGQKGSLGEAGAPGHKGSKGAPGPAGARGESGLAGAPGPAGP 593
Query: 454 -----MPSPRCPGEAQGVTDGRRASPSAPGGDQDRVSTTPQ-PTAQPGSGAGPQRPGPTQ 507
P P PG G D P R + PQ P PG P PG
Sbjct: 594 PGPPGPPGPPGPGLPAGFDD--MEGSGGPFWSTARSADGPQGPPGLPGLKGDPGVPGLPG 651
Query: 508 KRGGRGVRVPEGSPARIAFSGRRGGAKAQPMAEAESLGDRERRDGGGAAGGGAVAQLRAV 567
+G G +G P GR G A Q GDR R G G V
Sbjct: 652 AKGEVGA---DGVPGFPGLPGREGIAGPQ-----GPKGDRGSRGEKGDPGKD------GV 697
Query: 568 GQGALCAAPRDSGPRVCATVESGGIPRDPGGQG 600
GQ L P GP V + + G + PG +G
Sbjct: 698 GQPGLPGPPGPPGPVVYVSEQDGSVLSVPGPEG 730
Score = 44.7 bits (104), Expect = 3e-04
Identities = 65/230 (28%), Positives = 79/230 (34%), Gaps = 59/230 (25%)
Query: 410 RDREPA-PETPARPLALGPLPRPGLRSARPPRQCRGEHRLG---PHAPMPSPRCPG---- 461
RD EP P +P GP PG P+ +G+ +G P P P PG
Sbjct: 403 RDGEPGDPGEDGKPGDTGPQGFPGTPGDVGPKGDKGDPGVGERGPPGPQGPPGPPGPSFR 462
Query: 462 ---------EAQG------VTDGRRASPSAPG--------GDQDRV----STTPQPTAQP 494
E G G R P PG G+ R S P P P
Sbjct: 463 HDKLTFIDMEGSGFGGDLEALRGPRGFPGPPGPPGVPGLPGEPGRFGVNSSDVPGPAGLP 522
Query: 495 GSGAGPQRPGPTQKRGGRGVRVPEGSPARIAFSGRRGGAKAQPMAEAESLGDRERRDGGG 554
G P R GP G G+ P G P R GR G + + EA + G + + G
Sbjct: 523 GV---PGREGPP---GFPGLPGPPGPPGREGPPGRTG--QKGSLGEAGAPGHKGSKGAPG 574
Query: 555 AAGGGAVAQLRAVGQGALCAAPRDSGPRVCATVESGGIPRDPGGQGHTLP 604
AG A G+ L AP +GP G P PG G LP
Sbjct: 575 PAG--------ARGESGLAGAPGPAGP--------PGPPGPPGPPGPGLP 608
Score = 43.1 bits (100), Expect = 7e-04
Identities = 103/383 (26%), Positives = 124/383 (32%), Gaps = 74/383 (19%)
Query: 185 QGRPGLPTRTMPR-DTGQPTRTMLWDTGQPCVLPQGPAVTP----------------PAF 227
QG PG P P+ D G P + + G P PQGP P F
Sbjct: 422 QGFPGTPGDVGPKGDKGDPG---VGERGPPG--PQGPPGPPGPSFRHDKLTFIDMEGSGF 476
Query: 228 PGVQETL---------PSLPVAPGAPGQRGRPSPYSLRVRGPRQDLPHLDGLHGAHDHHG 278
G E L P P PG PG+ GR S V GP LP + G G G
Sbjct: 477 GGDLEALRGPRGFPGPPGPPGVPGLPGEPGRFGVNSSDVPGP-AGLPGVPGREGPPGFPG 535
Query: 279 LGHASAQAAQQ--PTRAVQP-SLGIPHVVAEELEHSKPG--GGRRSRELRPRYRPRTPWL 333
L ++ P R Q SLG + PG G R L P P
Sbjct: 536 LPGPPGPPGREGPPGRTGQKGSLGEAGAPGHKGSKGAPGPAGARGESGLAGAPGPAGP-- 593
Query: 334 RTVCRTQSPGGGGGQDPTALGAAALGTRPPRRRGLPLLT---DAPVPRRVRALVQLQLRL 390
PG G P G A G G P + A P+ L L+
Sbjct: 594 --------PGPPGPPGPPGPGLPA-GFDDMEGSGGPFWSTARSADGPQGPPGLPGLK--- 641
Query: 391 HVLGGEGDADLDATRQAACRDREPA-PETPARPLALGPLPRPGLRSARPPRQCRGEHRLG 449
G G L + D P P P R GP G R +R + G+ +G
Sbjct: 642 ---GDPGVPGLPGAKGEVGADGVPGFPGLPGREGIAGPQGPKGDRGSRGEKGDPGKDGVG 698
Query: 450 -PHAPMPSPRCPGEAQGVTDGRRASPSAPGGDQDRVSTTPQPTAQPGSGAGPQRPGPTQK 508
P P P P PG V++ + S PG P +PG P GP
Sbjct: 699 QPGLPGP-PGPPGPVVYVSEQDGSVLSVPG-----------PEGRPGFAGFPGPAGPKGN 746
Query: 509 RGGRGVRVPEGSPARIAFSGRRG 531
G +G R GSP G G
Sbjct: 747 LGSKGER---GSPGPKGEKGEPG 766
Score = 42.7 bits (99), Expect = 0.001
Identities = 105/466 (22%), Positives = 141/466 (30%), Gaps = 105/466 (22%)
Query: 158 GCEALLAGPGPIQGGGNWELFPRKQCSQGRPGLPTRTMPR--DTGQPTRTMLWDTGQPCV 215
G L PGP G G PG P +P D + + W T +
Sbjct: 580 GESGLAGAPGPAGPPG----------PPGPPGPPGPGLPAGFDDMEGSGGPFWSTARSAD 629
Query: 216 LPQGPAVTPPAFPGVQETLPSLPVAPGAPGQRGRPSPYSLRVRGPRQDLPHLDGLHGAHD 275
PQGP P PG++ P +P PGA G+ G R+ + G G
Sbjct: 630 GPQGP----PGLPGLKGD-PGVPGLPGAKGEVGADGVPGFPGLPGREGIAGPQGPKGDRG 684
Query: 276 HHG-LGHASAQAAQQPTRAVQPSLGIPHVVAEELEHSK---------------PGGGRRS 319
G G QP P P V E + S PG
Sbjct: 685 SRGEKGDPGKDGVGQPGLPGPPGPPGPVVYVSEQDGSVLSVPGPEGRPGFAGFPGPAGPK 744
Query: 320 RELRPRYRPRTPWLRTVCRTQSPGGGGGQDPTALGAAALGTR-PPRRRGLPLLTDAPVPR 378
L + +P + PG D ALG A G + P RG P P
Sbjct: 745 GNLGSKGERGSPGPKG--EKGEPGSIFSPDGGALGPAQKGAKGEPGFRGPPGPYGRP--- 799
Query: 379 RVRALVQLQLRLHVLGGEGDADLDATRQAACRDREPAPETPARPLALGPLPRPGLRSARP 438
G +G+ P RP RPG+ +
Sbjct: 800 ---------------GYKGEIGF-----------------PGRP------GRPGMNGLKG 821
Query: 439 PRQCRGEHRLG-PHAPMPSPRCPGEAQGVTDGRRASPSAPGGDQDRVSTTPQPTAQPGSG 497
+ G+ LG MP P P P P G S +++PG
Sbjct: 822 EKGEPGDASLGFGMRGMPGPPGP-----------PGPPGPPGTPVYDSNVFAESSRPGPP 870
Query: 498 AGPQRPGPTQKRGGRGVRVPEGSPARIAFSGRRGGAKAQPMAEAESLGDRERRDGGGAAG 557
P GP +G +G P G P + F + +A+ E GD ++ G G
Sbjct: 871 GLPGNQGPPGPKGAKGEVGPPGPPGQFPFDFLQ--LEAEMKGEKGDRGDAGQKGERGEPG 928
Query: 558 GGAVAQLRAVGQGALCAAPRDSGPRVCATVESGGIPRDPGGQGHTL 603
GG +L P GPR G P PG +G ++
Sbjct: 929 GGGFF------GSSLPGPPGPPGPR--------GYPGIPGPKGESI 960
Score = 37.0 bits (84), Expect = 0.053
Identities = 26/72 (36%), Positives = 32/72 (44%), Gaps = 8/72 (11%)
Query: 179 PRKQCSQGRPGLPTRTMPRDTGQPTRTMLWDTGQPCVLPQGPAVTPPAFPGVQETLPSLP 238
P+ + +G+PG P P G R G P P GP PP+FPG S+P
Sbjct: 955 PKGESIRGQPGPPGPQGPPGIGYEGRQ-----GPPG--PPGPP-GPPSFPGPHRQTISVP 1006
Query: 239 VAPGAPGQRGRP 250
PG PG G P
Sbjct: 1007 GPPGPPGPPGPP 1018
Score = 36.2 bits (82), Expect = 0.090
Identities = 35/123 (28%), Positives = 44/123 (35%), Gaps = 8/123 (6%)
Query: 405 RQAACRDREPAPETPARPLALGPLPRPGLRSARPPRQCRGEHRLGPHAP----MPSPRCP 460
++ + ++ P P P GP P L PP LGP P +P P+ P
Sbjct: 334 KEGGLKGQKGEPGVPGPPGRAGPPGSPCLPG--PPGLPCPVSPLGPAGPALQTVPGPQGP 391
Query: 461 GEAQGV--TDGRRASPSAPGGDQDRVSTTPQPTAQPGSGAGPQRPGPTQKRGGRGVRVPE 518
G T GR P PG D T PQ GP+ G RG P+
Sbjct: 392 PGPPGRDGTPGRDGEPGDPGEDGKPGDTGPQGFPGTPGDVGPKGDKGDPGVGERGPPGPQ 451
Query: 519 GSP 521
G P
Sbjct: 452 GPP 454
>gi|110611235 alpha 1 type XVIII collagen isoform 1 precursor [Homo
sapiens]
Length = 1516
Score = 57.8 bits (138), Expect = 3e-08
Identities = 121/453 (26%), Positives = 139/453 (30%), Gaps = 88/453 (19%)
Query: 166 PGPIQGGGNWELFPRKQCSQGRPGLPTRTMPRDTGQPTRTMLWDTGQPCVLPQGPAVTPP 225
PGP G P C G PGLP P P Q PQGP P
Sbjct: 528 PGPPGRAGP----PGSPCLPGPPGLPCPVSPLGPAGPAL-------QTVPGPQGP----P 572
Query: 226 AFPGVQETLPSLPVAPGAPGQRGRPSPYSLRVRGPR--QDLPHLDGLHGAHDHHGLGHAS 283
PG T P PG PG+ G+P GP+ P G G G+G
Sbjct: 573 GPPGRDGT-PGRDGEPGDPGEDGKPGD-----TGPQGFPGTPGDVGPKGDKGDPGVGERG 626
Query: 284 AQAAQQPTRAVQPSLGIPHVVAEELEHSKPGGGRRSRELRPRYRPRTPWLRTVCRTQ-SP 342
Q P PS + ++E S GG + PR P P V P
Sbjct: 627 PPGPQGPPGPPGPSFRHDKLTFIDMEGSGFGGDLEALR-GPRGFPGPPGPPGVPGLPGEP 685
Query: 343 GGGGGQDPTALGAAALGTRPPRR--RGLPLLTDAPVPRRVRALVQLQLRLHVLGGEGDAD 400
G G G A L P R G P L P P
Sbjct: 686 GRFGVNSSDVPGPAGLPGVPGREGPPGFPGLPGPPGP----------------------- 722
Query: 401 LDATRQAACRDREPAPETPARPLALGPLPRP---GLRSARPPRQCRGEHRL----GPHAP 453
RE P + +LG P G + A P RGE L GP P
Sbjct: 723 ---------PGREGPPGRTGQKGSLGEAGAPGHKGSKGAPGPAGARGESGLAGAPGPAGP 773
Query: 454 -----MPSPRCPGEAQGVTDGRRASPSAPGGDQDRVSTTPQ-PTAQPGSGAGPQRPGPTQ 507
P P PG G D P R + PQ P PG P PG
Sbjct: 774 PGPPGPPGPPGPGLPAGFDD--MEGSGGPFWSTARSADGPQGPPGLPGLKGDPGVPGLPG 831
Query: 508 KRGGRGVRVPEGSPARIAFSGRRGGAKAQPMAEAESLGDRERRDGGGAAGGGAVAQLRAV 567
+G G +G P GR G A Q GDR R G G V
Sbjct: 832 AKGEVGA---DGVPGFPGLPGREGIAGPQ-----GPKGDRGSRGEKGDPGKD------GV 877
Query: 568 GQGALCAAPRDSGPRVCATVESGGIPRDPGGQG 600
GQ L P GP V + + G + PG +G
Sbjct: 878 GQPGLPGPPGPPGPVVYVSEQDGSVLSVPGPEG 910
Score = 44.7 bits (104), Expect = 3e-04
Identities = 65/230 (28%), Positives = 79/230 (34%), Gaps = 59/230 (25%)
Query: 410 RDREPA-PETPARPLALGPLPRPGLRSARPPRQCRGEHRLG---PHAPMPSPRCPG---- 461
RD EP P +P GP PG P+ +G+ +G P P P PG
Sbjct: 583 RDGEPGDPGEDGKPGDTGPQGFPGTPGDVGPKGDKGDPGVGERGPPGPQGPPGPPGPSFR 642
Query: 462 ---------EAQG------VTDGRRASPSAPG--------GDQDRV----STTPQPTAQP 494
E G G R P PG G+ R S P P P
Sbjct: 643 HDKLTFIDMEGSGFGGDLEALRGPRGFPGPPGPPGVPGLPGEPGRFGVNSSDVPGPAGLP 702
Query: 495 GSGAGPQRPGPTQKRGGRGVRVPEGSPARIAFSGRRGGAKAQPMAEAESLGDRERRDGGG 554
G P R GP G G+ P G P R GR G + + EA + G + + G
Sbjct: 703 GV---PGREGPP---GFPGLPGPPGPPGREGPPGRTG--QKGSLGEAGAPGHKGSKGAPG 754
Query: 555 AAGGGAVAQLRAVGQGALCAAPRDSGPRVCATVESGGIPRDPGGQGHTLP 604
AG A G+ L AP +GP G P PG G LP
Sbjct: 755 PAG--------ARGESGLAGAPGPAGP--------PGPPGPPGPPGPGLP 788
Score = 43.1 bits (100), Expect = 7e-04
Identities = 103/383 (26%), Positives = 124/383 (32%), Gaps = 74/383 (19%)
Query: 185 QGRPGLPTRTMPR-DTGQPTRTMLWDTGQPCVLPQGPAVTP----------------PAF 227
QG PG P P+ D G P + + G P PQGP P F
Sbjct: 602 QGFPGTPGDVGPKGDKGDPG---VGERGPPG--PQGPPGPPGPSFRHDKLTFIDMEGSGF 656
Query: 228 PGVQETL---------PSLPVAPGAPGQRGRPSPYSLRVRGPRQDLPHLDGLHGAHDHHG 278
G E L P P PG PG+ GR S V GP LP + G G G
Sbjct: 657 GGDLEALRGPRGFPGPPGPPGVPGLPGEPGRFGVNSSDVPGP-AGLPGVPGREGPPGFPG 715
Query: 279 LGHASAQAAQQ--PTRAVQP-SLGIPHVVAEELEHSKPG--GGRRSRELRPRYRPRTPWL 333
L ++ P R Q SLG + PG G R L P P
Sbjct: 716 LPGPPGPPGREGPPGRTGQKGSLGEAGAPGHKGSKGAPGPAGARGESGLAGAPGPAGP-- 773
Query: 334 RTVCRTQSPGGGGGQDPTALGAAALGTRPPRRRGLPLLT---DAPVPRRVRALVQLQLRL 390
PG G P G A G G P + A P+ L L+
Sbjct: 774 --------PGPPGPPGPPGPGLPA-GFDDMEGSGGPFWSTARSADGPQGPPGLPGLK--- 821
Query: 391 HVLGGEGDADLDATRQAACRDREPA-PETPARPLALGPLPRPGLRSARPPRQCRGEHRLG 449
G G L + D P P P R GP G R +R + G+ +G
Sbjct: 822 ---GDPGVPGLPGAKGEVGADGVPGFPGLPGREGIAGPQGPKGDRGSRGEKGDPGKDGVG 878
Query: 450 -PHAPMPSPRCPGEAQGVTDGRRASPSAPGGDQDRVSTTPQPTAQPGSGAGPQRPGPTQK 508
P P P P PG V++ + S PG P +PG P GP
Sbjct: 879 QPGLPGP-PGPPGPVVYVSEQDGSVLSVPG-----------PEGRPGFAGFPGPAGPKGN 926
Query: 509 RGGRGVRVPEGSPARIAFSGRRG 531
G +G R GSP G G
Sbjct: 927 LGSKGER---GSPGPKGEKGEPG 946
Score = 42.7 bits (99), Expect = 0.001
Identities = 105/466 (22%), Positives = 141/466 (30%), Gaps = 105/466 (22%)
Query: 158 GCEALLAGPGPIQGGGNWELFPRKQCSQGRPGLPTRTMPR--DTGQPTRTMLWDTGQPCV 215
G L PGP G G PG P +P D + + W T +
Sbjct: 760 GESGLAGAPGPAGPPG----------PPGPPGPPGPGLPAGFDDMEGSGGPFWSTARSAD 809
Query: 216 LPQGPAVTPPAFPGVQETLPSLPVAPGAPGQRGRPSPYSLRVRGPRQDLPHLDGLHGAHD 275
PQGP P PG++ P +P PGA G+ G R+ + G G
Sbjct: 810 GPQGP----PGLPGLKGD-PGVPGLPGAKGEVGADGVPGFPGLPGREGIAGPQGPKGDRG 864
Query: 276 HHG-LGHASAQAAQQPTRAVQPSLGIPHVVAEELEHSK---------------PGGGRRS 319
G G QP P P V E + S PG
Sbjct: 865 SRGEKGDPGKDGVGQPGLPGPPGPPGPVVYVSEQDGSVLSVPGPEGRPGFAGFPGPAGPK 924
Query: 320 RELRPRYRPRTPWLRTVCRTQSPGGGGGQDPTALGAAALGTR-PPRRRGLPLLTDAPVPR 378
L + +P + PG D ALG A G + P RG P P
Sbjct: 925 GNLGSKGERGSPGPKG--EKGEPGSIFSPDGGALGPAQKGAKGEPGFRGPPGPYGRP--- 979
Query: 379 RVRALVQLQLRLHVLGGEGDADLDATRQAACRDREPAPETPARPLALGPLPRPGLRSARP 438
G +G+ P RP RPG+ +
Sbjct: 980 ---------------GYKGEIGF-----------------PGRP------GRPGMNGLKG 1001
Query: 439 PRQCRGEHRLG-PHAPMPSPRCPGEAQGVTDGRRASPSAPGGDQDRVSTTPQPTAQPGSG 497
+ G+ LG MP P P P P G S +++PG
Sbjct: 1002 EKGEPGDASLGFGMRGMPGPPGP-----------PGPPGPPGTPVYDSNVFAESSRPGPP 1050
Query: 498 AGPQRPGPTQKRGGRGVRVPEGSPARIAFSGRRGGAKAQPMAEAESLGDRERRDGGGAAG 557
P GP +G +G P G P + F + +A+ E GD ++ G G
Sbjct: 1051 GLPGNQGPPGPKGAKGEVGPPGPPGQFPFDFLQ--LEAEMKGEKGDRGDAGQKGERGEPG 1108
Query: 558 GGAVAQLRAVGQGALCAAPRDSGPRVCATVESGGIPRDPGGQGHTL 603
GG +L P GPR G P PG +G ++
Sbjct: 1109 GGGFF------GSSLPGPPGPPGPR--------GYPGIPGPKGESI 1140
Score = 37.0 bits (84), Expect = 0.053
Identities = 26/72 (36%), Positives = 32/72 (44%), Gaps = 8/72 (11%)
Query: 179 PRKQCSQGRPGLPTRTMPRDTGQPTRTMLWDTGQPCVLPQGPAVTPPAFPGVQETLPSLP 238
P+ + +G+PG P P G R G P P GP PP+FPG S+P
Sbjct: 1135 PKGESIRGQPGPPGPQGPPGIGYEGRQ-----GPPG--PPGPP-GPPSFPGPHRQTISVP 1186
Query: 239 VAPGAPGQRGRP 250
PG PG G P
Sbjct: 1187 GPPGPPGPPGPP 1198
Score = 36.2 bits (82), Expect = 0.090
Identities = 35/123 (28%), Positives = 44/123 (35%), Gaps = 8/123 (6%)
Query: 405 RQAACRDREPAPETPARPLALGPLPRPGLRSARPPRQCRGEHRLGPHAP----MPSPRCP 460
++ + ++ P P P GP P L PP LGP P +P P+ P
Sbjct: 514 KEGGLKGQKGEPGVPGPPGRAGPPGSPCLPG--PPGLPCPVSPLGPAGPALQTVPGPQGP 571
Query: 461 GEAQGV--TDGRRASPSAPGGDQDRVSTTPQPTAQPGSGAGPQRPGPTQKRGGRGVRVPE 518
G T GR P PG D T PQ GP+ G RG P+
Sbjct: 572 PGPPGRDGTPGRDGEPGDPGEDGKPGDTGPQGFPGTPGDVGPKGDKGDPGVGERGPPGPQ 631
Query: 519 GSP 521
G P
Sbjct: 632 GPP 634
>gi|239754955 PREDICTED: similar to COL22A1 protein [Homo sapiens]
Length = 1073
Score = 57.4 bits (137), Expect = 4e-08
Identities = 94/363 (25%), Positives = 115/363 (31%), Gaps = 90/363 (24%)
Query: 178 FPRKQCSQGRPGLPTRTMPRDTGQPTRTMLWDTGQPCVLPQGPAVTP--PAFPGVQETLP 235
FP Q GR GL + P D + + D P GP P P F G + +P
Sbjct: 532 FPGPQGPAGRDGLSSLLSPGDINLLAKDVCNDC------PPGPPGLPGLPGFKG-DKGVP 584
Query: 236 SLPVAPGAPGQRGRPSPYSLRVRGPRQDLPHLDGLHGAHDHHGLGHASAQAAQQPTRAVQ 295
P G G++G P L GP P + G G+ G Q Q V
Sbjct: 585 GKPGREGTEGKKGEAGPPGLP--GP----PGIAGPQGSQGERGADGEVGQKGDQGHPGVP 638
Query: 296 PSLGIPHVVAEELEHSKPGGGRRSRELRPRYRPRTPWLRTVCRTQSPGGGGGQDPTALGA 355
+G P PG PG G GA
Sbjct: 639 GFMGPP---------GNPG--------------------------PPGADG-----IAGA 658
Query: 356 AALGTRPPRRRGLPLLTDAPVPRRVRALVQLQLRLHVLGGEGDADLDATRQAACRDREPA 415
A PP +G P P P+ L + G EG RD +P
Sbjct: 659 AG----PPGIQGSPGKEGPPGPQGPSGLPGIP------GEEGKEG---------RDGKPG 699
Query: 416 PETPARPLALGPLPRPGLRSARPPRQCRGEHRLGPHAPMPSPRCPGEAQGVTDGRRASPS 475
P P P G PG AR P +G + P PR A G+
Sbjct: 700 P--PGEPGKAGEPGLPGPEGARGPPGFKGHTG---DSGAPGPRGESGAMGLP----GQEG 750
Query: 476 APGGDQDRVSTTPQ-------PTAQPGSGAGPQRPGPTQKRGGRGVRVPEGSPARIAFSG 528
PG D D T PQ P + GS P PGP+ G +G + GSP F G
Sbjct: 751 LPGKDGDTGPTGPQGPQGPRGPPGKNGSPGSPGEPGPSGTPGQKGSKGENGSPGLPGFLG 810
Query: 529 RRG 531
RG
Sbjct: 811 PRG 813
Score = 55.8 bits (133), Expect = 1e-07
Identities = 106/452 (23%), Positives = 147/452 (32%), Gaps = 35/452 (7%)
Query: 163 LAGPGPIQGGGNWELFPRKQCSQGRPGLPT-RTMPRDTGQPTRTMLWDTGQPCVLPQGPA 221
+AGP QG + ++ QG PG+P P + G P + P + P
Sbjct: 610 IAGPQGSQGERGADGEVGQKGDQGHPGVPGFMGPPGNPGPPGADGIAGAAGPPGIQGSPG 669
Query: 222 VTPPAFPGVQETLPSLPVAPGAPGQRGRPSPYSLRVRGPRQDLPHLDGLHGAHDHHGLGH 281
P P LP +P G G+ G+P P + LP +G G G H
Sbjct: 670 KEGPPGPQGPSGLPGIPGEEGKEGRDGKPGPPGEPGKAGEPGLPGPEGARGPPGFKG--H 727
Query: 282 ASAQAAQQPTRAVQPSLGIPHVVAEELEHSKPGGGRRSRELRPRYRPRTPWLRTVCRTQS 341
A P R ++G+P +E K G + P+ PR P + S
Sbjct: 728 TGDSGAPGP-RGESGAMGLP---GQEGLPGKDGDTGPTGPQGPQ-GPRGP----PGKNGS 778
Query: 342 PGGGGGQDPTALGAAALGTRPPRRRGLPLLTDAPVPRRVRALVQLQLRLHVLGGEGDADL 401
PG G P+ GLP P + + V G G+
Sbjct: 779 PGSPGEPGPSGTPGQKGSKGENGSPGLPGFLGPRGPPGEPGEKGVPGKEGVPGKPGEPGF 838
Query: 402 DATR-QAACRDREPAPETPARPLALGPLPRPGLRSARPPRQCRGEHR-LGPHAPMPSPRC 459
R + + P +P G G P+ GE+ +GP P P
Sbjct: 839 KGERGDPGIKGDKGPPGGKGQPGDPGIPGHKGHTGLMGPQGLPGENGPVGPPGPPGQPGF 898
Query: 460 PG---EAQGVTDGRRASPSAPGGDQDR----VSTTPQPTAQPGSGAGPQRPGPTQKRGGR 512
PG E+ + RR G + + P S P PGP K G
Sbjct: 899 PGLRGESPSMETLRRLIQEELGKQLETRLAYLLAQMPPAYMKSSQGRPGPPGPPGKDGLP 958
Query: 513 GVRVPEGSPARIAFSGRRGGAKAQPMAEAESLGDRERRDGGGAAGGGAVAQLRAVGQGAL 572
G P G P R G G P G+R + GA G G ++ G +
Sbjct: 959 GRAGPMGEPGRPGQGGLEG-----PSGPIGPKGERGAKGDPGAPGVGLRGEM---GPPGI 1010
Query: 573 CAAPRDSGPRVCATVESGGIPRDPGGQGHTLP 604
P + G G+P PG QG T P
Sbjct: 1011 PGQPGEPG------YAKDGLPGIPGPQGETGP 1036
Score = 48.9 bits (115), Expect = 1e-05
Identities = 99/402 (24%), Positives = 139/402 (34%), Gaps = 75/402 (18%)
Query: 164 AGPGPIQGGGNWELFPRKQCSQGRPGLPTRT-------MPRDTGQPTRTMLWDTGQPCVL 216
AGP IQG E P Q G PG+P P G+P + G+P +
Sbjct: 659 AGPPGIQGSPGKEGPPGPQGPSGLPGIPGEEGKEGRDGKPGPPGEPGKA-----GEPGLP 713
Query: 217 PQGPAVTPPAFPGV-----------QETLPSLPVAPGAPGQRGRPSPYSLR-VRGPRQDL 264
A PP F G + LP G PG+ G P + +GPR
Sbjct: 714 GPEGARGPPGFKGHTGDSGAPGPRGESGAMGLPGQEGLPGKDGDTGPTGPQGPQGPRGP- 772
Query: 265 PHLDGLHGAHDHHGLGHASAQAAQQPTRAVQPSLGIPHVVAEELEHSKPGG-GRRSRELR 323
G +G+ G S Q+ ++ S G+P + +PG G +E
Sbjct: 773 ---PGKNGSPGSPGEPGPSGTPGQKGSKGENGSPGLPGFLGPRGPPGEPGEKGVPGKEGV 829
Query: 324 PRYRPRTPWLRT------VCRTQSPGGGGGQ--DPTALG----AAALGTR---------- 361
P +P P + + + P GG GQ DP G +G +
Sbjct: 830 PG-KPGEPGFKGERGDPGIKGDKGPPGGKGQPGDPGIPGHKGHTGLMGPQGLPGENGPVG 888
Query: 362 ---PPRRRGLP-LLTDAPVPRRVRALVQLQL--RLHVLGGEGDADLDATRQAACRDREPA 415
PP + G P L ++P +R L+Q +L +L A + + + R
Sbjct: 889 PPGPPGQPGFPGLRGESPSMETLRRLIQEELGKQLETRLAYLLAQMPPAYMKSSQGRPGP 948
Query: 416 PETPAR---PLALGPLPRPGLRSARPPRQCRGEHRLGPHAPMPSPRCPGE--AQGV---- 466
P P + P GP+ PG P Q E GP P G+ A GV
Sbjct: 949 PGPPGKDGLPGRAGPMGEPGR-----PGQGGLEGPSGPIGPKGERGAKGDPGAPGVGLRG 1003
Query: 467 ---TDGRRASPSAPGGDQDRVSTTPQPTAQPGSGAGPQRPGP 505
G P PG +D + P P + G P PGP
Sbjct: 1004 EMGPPGIPGQPGEPGYAKDGLPGIPGPQGETGPAGHPGLPGP 1045
Score = 45.4 bits (106), Expect = 1e-04
Identities = 89/314 (28%), Positives = 110/314 (35%), Gaps = 52/314 (16%)
Query: 237 LPVAPGAPGQRGRPSPYSLRVRGPRQDLPHLDGLHGAHDHHG-LGHASAQAAQQPTRAVQ 295
LP APG PG RG +G + +L L GL G G G A T
Sbjct: 287 LPGAPGFPGVRGEKGD-----QGEKGEL-GLPGLKGDRGEKGEAGPAGPPGLPGTTSLFT 340
Query: 296 PSLGIPHVVAEELEHSKPG-GGRRSRELRP-RYRPRTPWLRTVCRTQSPGGGGGQDPTAL 353
P +P + E PG G + RP P+ P P G GQ+ A
Sbjct: 341 PHPRMPGEQGPKGEKGDPGLPGEPGLQGRPGELGPQGP--------TGPPGAKGQE-GAH 391
Query: 354 GAAALGTRPPRRRGLPLLTDAPVPRRVRALVQLQLRLHVLGGEGDADLDATRQAACRDRE 413
GA P G P AP P V G +G+ + AA +
Sbjct: 392 GAPGAAGNP----GAPGHVGAPGPSGPPGSVGAPGLRGTPGKDGER---GEKGAAGEEGS 444
Query: 414 PAPETPARPLALGPLPRPGLRSARPPRQCRGEHRLGPHAPMPSPRCPGEAQGVTDGRRAS 473
P P P G PGL PP G+ + G SP PG T G R +
Sbjct: 445 PGPVGPR-----GDPGAPGLPG--PP----GKGKDGEPGLRGSPGLPGPLG--TKGDRGA 491
Query: 474 PSAPGGDQDRVSTTPQPTAQPGSG-AGPQRPGPTQKRGGRGVRVPEGSPARIAFSGRRGG 532
P PG +P PG G AGP PGP+ G +G G P F G +G
Sbjct: 492 PGIPG--------SPGSRGDPGIGVAGP--PGPSGPPGDKGSPGSRGLP---GFPGPQGP 538
Query: 533 AKAQPMAEAESLGD 546
A ++ S GD
Sbjct: 539 AGRDGLSSLLSPGD 552
Score = 41.6 bits (96), Expect = 0.002
Identities = 121/468 (25%), Positives = 147/468 (31%), Gaps = 101/468 (21%)
Query: 219 GPAVTPPAFPGVQETLPSLPVAPGAPGQRGRPS-------------PYSLRVRGPRQDLP 265
GPA PP PG P PG G +G P L +GP P
Sbjct: 325 GPA-GPPGLPGTTSLFTPHPRMPGEQGPKGEKGDPGLPGEPGLQGRPGELGPQGPTGP-P 382
Query: 266 HLDGLHGAHDHHGL-------GHASAQAAQQPTRAV-QPSL-GIPHVVAEELEHSKPGGG 316
G GAH G GH A P +V P L G P E E G
Sbjct: 383 GAKGQEGAHGAPGAAGNPGAPGHVGAPGPSGPPGSVGAPGLRGTPGKDGERGEKGAAGEE 442
Query: 317 RRSRELRPRYRPRTPWLRTVCRTQSPGGGGGQDPTALGA----AALGTR----------P 362
+ PR P P L PG G +P G+ LGT+
Sbjct: 443 GSPGPVGPRGDPGAPGL-----PGPPGKGKDGEPGLRGSPGLPGPLGTKGDRGAPGIPGS 497
Query: 363 PRRRGLPLLTDAPVP-----------RRVRALVQLQLRLHVLGGEG------DADLDATR 405
P RG P + A P R L G +G D++
Sbjct: 498 PGSRGDPGIGVAGPPGPSGPPGDKGSPGSRGLPGFPGPQGPAGRDGLSSLLSPGDINLLA 557
Query: 406 QAACRDREPAPE-TPARPLALGPLPRPGLRSARPPRQCRGEHRLGPHAPMPSPRCPGEA- 463
+ C D P P P P G PG +P R+ E + G P P PG A
Sbjct: 558 KDVCNDCPPGPPGLPGLPGFKGDKGVPG----KPGRE-GTEGKKGEAGPPGLPGPPGIAG 612
Query: 464 -QGVTDGRRASPSAPG--GDQDRVSTTPQPTAQPGSGAGPQRPGPTQKRGGRGVRVP--- 517
QG + G R + G GDQ PG P PGP G G P
Sbjct: 613 PQG-SQGERGADGEVGQKGDQGHPGV-------PGFMGPPGNPGPPGADGIAGAAGPPGI 664
Query: 518 EGSPARIAFSGRRGGAKAQPMAEAESLGDRERRDG-----GGAAGGGAVAQLRAVGQGAL 572
+GSP + G +G + + E R+ + G G A G A G
Sbjct: 665 QGSPGKEGPPGPQGPSGLPGIPGEEGKEGRDGKPGPPGEPGKAGEPGLPGPEGARGPPGF 724
Query: 573 CAAPRDS---GPRVCATVESG--------GIPRDPGGQGHTLPENTWG 609
DS GPR ESG G+P G G T P+ G
Sbjct: 725 KGHTGDSGAPGPR----GESGAMGLPGQEGLPGKDGDTGPTGPQGPQG 768
>gi|47778921 alpha 1 type XIX collagen precursor [Homo sapiens]
Length = 1142
Score = 57.4 bits (137), Expect = 4e-08
Identities = 116/466 (24%), Positives = 154/466 (33%), Gaps = 79/466 (16%)
Query: 186 GRPGLPTRTMPR----DTGQP-TRTMLWDTGQPCVLPQGPAVTPPAFPGVQETLPSLPVA 240
G PG P P+ + G+P T+ D G+P V+ P PG P L +
Sbjct: 465 GLPGFPGSVGPKGQKGEPGEPFTKGEKGDRGEPGVIGSQGVKGEPGDPGP----PGLIGS 520
Query: 241 PGAPGQRGRPSPYSLRVRGPRQDLPHLDGLHGAHDHHGLGHASAQAAQQPTRAVQPSLGI 300
PG GQ+G S S+ RGP D+ L G HG G+ +G
Sbjct: 521 PGLKGQQG--SAGSMGPRGPPGDVG-LPGEHGIPGKQGIKGEKGDPGG--------IIGP 569
Query: 301 PHVVAEELEHSKPGGGRRSRELRPRYRPRTPWLRTVCRTQSPGGGGGQDPTALGAAALGT 360
P + + E PG + P P L P G G+ + G
Sbjct: 570 PGLPGPKGEAGPPG----------KSLPGEPGLDGNPGAPGPRGPKGERGLPGVHGSPGD 619
Query: 361 RPPRRRGLPLLTDAPVPRRVRALVQLQLRLHVLGGEGDADLDATRQAACRDREPA-PETP 419
P+ G+P T A P + Q + G G RD +P P P
Sbjct: 620 IGPQGIGIPGRTGAQGPAGEPGI---QGPRGLPGLPGTPGTPGNDGVPGRDGKPGLPGPP 676
Query: 420 ARPLAL------GPLPR----------PGLRSARPPRQCRGEH-------RLGPHAPMPS 456
P+AL G L + PGL+S + GE R G P
Sbjct: 677 GDPIALPLLGDIGALLKNFCGNCQASVPGLKSNKGEEGGAGEPGKYDSMARKGDIGPRGP 736
Query: 457 PRCPG-EAQGVTDGRRASPSAPGGDQDR-------VSTTPQPTAQPGSGAGPQRPGPTQK 508
P PG E + G R P PG D + P PT PG PGPT
Sbjct: 737 PGIPGREGPKGSKGERGYPGIPGEKGDEGLQGIPGIPGAPGPTGPPGLMGRTGHPGPTGA 796
Query: 509 RGGRGVRVPEGSPA-----RIAFSGRRGGAKAQPMAEAESLGDRERRDG--GGAAGGGAV 561
+G +G P G P I F+ R G + + ++ G G G V
Sbjct: 797 KGEKGSDGPPGKPGPPGPPGIPFNERNGMSSLYKIKGGVNVPSYPGPPGPPGPKGDPGPV 856
Query: 562 AQLRAVGQGALCAAPRDSG-------PRVCATVESGGIPRDPGGQG 600
+ A+G L P G P + G P PG G
Sbjct: 857 GEPGAMGLPGLEGFPGVKGDRGPAGPPGIAGMSGKPGAPGPPGVPG 902
Score = 43.1 bits (100), Expect = 7e-04
Identities = 92/378 (24%), Positives = 125/378 (33%), Gaps = 52/378 (13%)
Query: 237 LPVAPGAPGQRGRPSPYSLRVRGPRQDLPHLDGLHGAHDHHG-LGHASAQAAQQPT--RA 293
LP APG+PGQ+G P +GLHGA G G + ++ T +
Sbjct: 296 LPGAPGSPGQKGHKGE------------PGENGLHGAPGFPGQKGEQGFEGSKGETGEKG 343
Query: 294 VQPSLGIPHVVAEELE---------HSKPGGGRRSRELRPRYRPRTPWLRTVCRTQSPGG 344
Q G P + E H PG + P P P + Q P G
Sbjct: 344 EQGEKGDPALAGLNGENGLKGDLGPHGPPGPKGEKGDTGPPGPPALPGSLGIQGPQGPPG 403
Query: 345 GGGQDPTALGAAALGTRPPRRRGLPLLTDAPVPRRVRALVQLQLRLHVLGGEGDADLDAT 404
GQ T PP + G P P P ++ + Q + +G+ + +A
Sbjct: 404 KEGQ-----RGRRGKTGPPGKPGPP---GPPGPPGIQGIHQTLGGYYNKDNKGNDEHEAG 455
Query: 405 RQAACRDREPAPETPARPLALGPLPRPGLRSARPPRQCRGEHR-LGPHAPMPSPRCPGEA 463
+ P P G PG + + RGE +G P PG
Sbjct: 456 GLKGDKGETGLPGFPGSVGPKGQKGEPGEPFTKGEKGDRGEPGVIGSQGVKGEPGDPG-- 513
Query: 464 QGVTDGRRASPSAPGGDQDRVSTTPQPTAQPGSGAGPQRPGPTQKRGGRGVRVPEGSPAR 523
G SP G Q + + P PG P G K+G +G +G P
Sbjct: 514 ---PPGLIGSPGLKG--QQGSAGSMGPRGPPGDVGLPGEHGIPGKQGIKG---EKGDPGG 565
Query: 524 IAFSGRRGGAKAQPMAEAESLGDRERRDGG-GAAGGGAVAQLRAVGQGALCAAPRDSGPR 582
I G K + +SL DG GA G R G + +P D GP
Sbjct: 566 IIGPPGLPGPKGEAGPPGKSLPGEPGLDGNPGAPGPRGPKGER--GLPGVHGSPGDIGP- 622
Query: 583 VCATVESGGIPRDPGGQG 600
+ GIP G QG
Sbjct: 623 -----QGIGIPGRTGAQG 635
Score = 37.0 bits (84), Expect = 0.053
Identities = 83/323 (25%), Positives = 111/323 (34%), Gaps = 54/323 (16%)
Query: 169 IQGGGNWELFPRKQCSQGRPGLP-TRTMPRDTGQPTRTMLWDT-GQPCVLPQGPAVTPPA 226
I+GG N +P G PG P + P G+P L G P V PP
Sbjct: 831 IKGGVNVPSYP------GPPGPPGPKGDPGPVGEPGAMGLPGLEGFPGVKGDRGPAGPPG 884
Query: 227 FPGVQETLPSLPVAPGAPGQRGRPSPY-SLRVRGPR--QDLPHLDGLHGAHDHHGLGHAS 283
G+ P P PG PG+ G P + GP P ++G G G+
Sbjct: 885 IAGMSGK-PGAPGPPGVPGEPGERGPVGDIGFPGPEGPSGKPGINGKDGIPGAQGIMGKP 943
Query: 284 AQAAQQPTRAVQPSLGIPHVVAEELEHSKPGGGRRSRELRPRYRPRTPWLRTVCRTQSPG 343
+ R Q GIP + E KPG + P P SPG
Sbjct: 944 GDRGPKGERGDQ---GIPGDRGSQGERGKPGLTGMKGAIGPMGPPGNKG-----SMGSPG 995
Query: 344 GGGGQDPTALGAAALGTRPPRRRGLP-LLTDAPVPRRVRALVQLQL------RLHVLGGE 396
G PP G+P + DA ++ + ++ R+ V +
Sbjct: 996 HQG---------------PPGSPGIPGIPADAVSFEEIKKYINQEVLRIFEERMAVFLSQ 1040
Query: 397 GDADLDATRQAACRDREPAPETPARPLALGPLPRPGLRSARPPRQCRGEHRLGPHAPMP- 455
L A AA P P P + GP PG + R + RGE +G +P
Sbjct: 1041 --LKLPAAMLAAQAYGRPGP--PGKDGLPGPPGDPGPQGYRGQKGERGEPGIG----LPG 1092
Query: 456 SPRCPGEAQGVTDGRRASPSAPG 478
SP PG + G SP APG
Sbjct: 1093 SPGLPGTS---ALGLPGSPGAPG 1112
Score = 36.6 bits (83), Expect = 0.069
Identities = 104/449 (23%), Positives = 134/449 (29%), Gaps = 109/449 (24%)
Query: 179 PRKQCSQGRPGLP-TRTMPRDTGQPTRTMLWDTGQPCVLPQGPAVTPPAFP--------- 228
P Q +G PGLP T P + G P R G+P + GP P A P
Sbjct: 640 PGIQGPRGLPGLPGTPGTPGNDGVPGRD-----GKPGL--PGPPGDPIALPLLGDIGALL 692
Query: 229 -----GVQETLPSLPVAPGAPGQRGRPSPYSLRVR----GPR--QDLPHLDGLHGAHDHH 277
Q ++P L G G G P Y R GPR +P +G G+
Sbjct: 693 KNFCGNCQASVPGLKSNKGEEGGAGEPGKYDSMARKGDIGPRGPPGIPGREGPKGSKGER 752
Query: 278 GLGHASAQAAQQPTRAVQPSLGIPHVVAEELEHSKPGGGRRSRELRPRYRPRTPWLRTVC 337
G + + + GIP + PG +
Sbjct: 753 GYPGIPGEKGDEGLQ------GIPGIPGAPGPTGPPG--------------------LMG 786
Query: 338 RTQSPGGGGGQDPTALGAAALGTRPPRRRGLPLLTDAPVPRRVRALVQLQLRLHVLGGEG 397
RT PG PT PP + G P P R G
Sbjct: 787 RTGHPG------PTGAKGEKGSDGPPGKPGPPGPPGIPFNER----------------NG 824
Query: 398 DADLDATRQAACRDREPAPETPARPLA-LGPLPRPGLRSARPPRQCRGEHRLGPHAPMPS 456
+ L + P P P P GP+ PG G L +
Sbjct: 825 MSSLYKIKGGVNVPSYPGPPGPPGPKGDPGPVGEPG---------AMGLPGLEGFPGVKG 875
Query: 457 PRCPGEAQGVTDGRRASPSAPGGDQDRVSTTPQPTAQPGSGAGPQR----PGPTQKRGGR 512
R P G+ G P APG P +PG GP PGP G
Sbjct: 876 DRGPAGPPGIA-GMSGKPGAPG--------PPGVPGEPGE-RGPVGDIGFPGPEGPSGKP 925
Query: 513 GVRVPEGSPARIAFSGRRG--GAKAQPMAEAESLGDR----ERRDGGGAAGGGAVAQLRA 566
G+ +G P G+ G G K + + GDR ER G GA+ +
Sbjct: 926 GINGKDGIPGAQGIMGKPGDRGPKGE-RGDQGIPGDRGSQGERGKPGLTGMKGAIGPMGP 984
Query: 567 VGQGALCAAPRDSGPRVCATVESGGIPRD 595
G +P GP + GIP D
Sbjct: 985 PGNKGSMGSPGHQGPPGSPGIP--GIPAD 1011
Score = 33.5 bits (75), Expect = 0.58
Identities = 25/72 (34%), Positives = 32/72 (44%), Gaps = 11/72 (15%)
Query: 186 GRPGLPTRT-MPRDTGQPT----RTMLWDTGQPCVLPQGPAVTPPAFPGVQETLPSLPVA 240
GRPG P + +P G P R + G+P + G P PG LP +
Sbjct: 1054 GRPGPPGKDGLPGPPGDPGPQGYRGQKGERGEPGIGLPGS----PGLPGTSAL--GLPGS 1107
Query: 241 PGAPGQRGRPSP 252
PGAPG +G P P
Sbjct: 1108 PGAPGPQGPPGP 1119
>gi|149158690 HLA-B associated transcript-2 [Homo sapiens]
Length = 2157
Score = 56.2 bits (134), Expect = 8e-08
Identities = 113/436 (25%), Positives = 149/436 (34%), Gaps = 68/436 (15%)
Query: 134 YGGHQQGGHDEEADGLVRALLQDSGCEALLAGPGPIQGGGNWELFPR-KQCSQGRP-GLP 191
YGG +G E R+ + G + G G GG N PR + S+ R G
Sbjct: 1042 YGGRGRGARSRE----FRSYREFRGDD----GRGGGTGGPNHPPAPRGRTASETRSEGSE 1093
Query: 192 TRTMPRDTGQPTRTMLWDTGQPCVLPQGPAVTPPAFPGVQETLPSLPVAPGAPGQRGRPS 251
+P+ Q +T + + P P + TL +P+AP PG P+
Sbjct: 1094 YEEIPKRRRQRGSETGSETHESDLAPSDKEAPTPK----EGTLTQVPLAPPPPGAPPSPA 1149
Query: 252 PYSLRVRGPRQDLPHLDGLHGAHDHHGLGHASAQAAQQPTRAVQPSLGIPHVVAEELEHS 311
P RG R P G+ + +P V P P A+ L
Sbjct: 1150 PARFTARGGRVFTP-----------RGVPSRRGRGGGRPPPQVCPGWSPP---AKSLAPK 1195
Query: 312 KPGGGRRSRELRPRYRPRTPW-LRTVCRTQSPGGG--GGQDPTALGAAALGTRPPRRR-G 367
KP G P P L V R S GG G +D G RP RRR G
Sbjct: 1196 KPPTGPLPPSKEPLKEKLIPGPLSPVARGGSNGGSNVGMED---------GERPRRRRHG 1246
Query: 368 LPLLTDAPVPRRVRALVQLQLRLHVLGGEGDADLDATRQAACRDREPAPETPARPLALGP 427
D P R R L Q + G EG L A P PE + + P
Sbjct: 1247 RAQQQDK--PPRFRRLKQ-ERENAARGSEGKPSLTLPASA------PGPEEALTTVTVAP 1297
Query: 428 LPRPGLRSARPPRQCRGEHRLGPHAPMPSPRCPGEAQGVTDGRRASPSAPGGDQDRVSTT 487
PR R+A ++ + + E+ T RR AP V T
Sbjct: 1298 APR---RAAAKSPDLSNQNSDQANEEWET---ASESSDFTSERRGDKEAP----PPVLLT 1347
Query: 488 PQPTAQPGSGAGPQRPG-PTQKRGGRGVRVPEGSPARIAFSGRRGGAKAQ-----PMAEA 541
P+ PG G G PG RG R + S + +FS +R G + Q P +A
Sbjct: 1348 PKAVGTPGGGGGGAVPGISAMSRGDLSQRAKDLS--KRSFSSQRPGMERQNRRPGPGGKA 1405
Query: 542 ESLGDRERRDGGGAAG 557
S G GGG G
Sbjct: 1406 GSSGSSSGGGGGGPGG 1421
Score = 36.2 bits (82), Expect = 0.090
Identities = 46/162 (28%), Positives = 63/162 (38%), Gaps = 25/162 (15%)
Query: 405 RQAACRDREPAPETPARPLALGPL---PRPGLRSARPPRQC-RGEHRLGPHAPMPSPRCP 460
R + R P E A P GP+ P P PP+ +G+ P P P P
Sbjct: 929 RPGSSRRGIPPEEPGAPPRRAGPIKKPPPPTKVEELPPKPLEQGDET--PKPPKPDPL-- 984
Query: 461 GEAQGVTDGRRASP--SAPGGDQDRVSTTPQPTAQPGSGAGPQRPGPTQKRG-GRGVRVP 517
+T G+ P + P G+ +P P + +R GPT RG GRG
Sbjct: 985 ----KITKGKLGGPKETPPNGN-----LSPAPRLRRDYSY--ERVGPTSCRGRGRGEYFA 1033
Query: 518 EGSPARIAFSGRRGGAKAQPMAEAESLGDRERRDGGGAAGGG 559
G R + GR GA+++ E S + DG G GG
Sbjct: 1034 RGRGFRGTYGGRGRGARSR---EFRSYREFRGDDGRGGGTGG 1072
Score = 34.3 bits (77), Expect = 0.34
Identities = 59/258 (22%), Positives = 88/258 (34%), Gaps = 42/258 (16%)
Query: 200 GQPTRTMLWDTGQPCVLPQGPAVTPPAFPGVQETLPSLPVAPGAPGQRGRPSPYSLRVRG 259
G P + + + P P PA PP P V + LP+ P P A P
Sbjct: 498 GAPDKRLKAEPAAPPAAPSTPA--PP--PAVPKELPAPPAPPPASAPTPETEPEEPAQAP 553
Query: 260 PRQDLPHLDGLHGAHDHHGLGHASAQAAQQPTRAVQPSLGIPHVVAEELEHSKPGGGRRS 319
P Q P G L + + + + S P + ++E G
Sbjct: 554 PAQSTP----TPGVAAAPTLVSGGGSTSSTSSGSFEASPVEPQLPSKE-------GPEPP 602
Query: 320 RELRPRYRPRTPWLRTVCRTQSPGGGGGQDPTALGAAALGTRPPRRRGL--PLLTDAPVP 377
E+ P P P + + G G G TR P +GL P + P
Sbjct: 603 EEVPPPTTPPVP------KVEPKGDGIGP-----------TRQPPSQGLGYPKYQKSLPP 645
Query: 378 RRVRALVQLQLRLHVLGGEGDADLDATRQAACRDREPAPETPARPLALGPLPRPGLRSAR 437
R Q Q + +L + +Q + P P +P +P+ LG +P P ++
Sbjct: 646 R-----FQRQQQEQLLKQQQQHQWQQHQQGSAPPT-PVPPSPPQPVTLGAVPAP--QAPP 697
Query: 438 PPRQCRGEHRLGPHAPMP 455
PP + LG PMP
Sbjct: 698 PPPKALYPGALGRPPPMP 715
Score = 32.7 bits (73), Expect = 1.00
Identities = 32/112 (28%), Positives = 40/112 (35%), Gaps = 12/112 (10%)
Query: 445 EHRLGPHAPMPSPRCPGEAQGVTDGRRASPSAPGGDQDRVSTTPQPTAQPGSGAGPQRPG 504
+H+ G P P P P Q VT G +P AP P P A G P
Sbjct: 666 QHQQGSAPPTPVP--PSPPQPVTLGAVPAPQAP---------PPPPKALYPGALGRPPPM 714
Query: 505 PTQKRGGRGVRVPEGSPARIAFSGRRGGAKAQPMAEAESLGDRERRDGGGAA 556
P R + +P R+ GR P L RER D GG++
Sbjct: 715 PPMNFDPRWMMIPPYVDPRL-LQGRPPLDFYPPGVHPSGLVPRERSDSGGSS 765
Score = 32.3 bits (72), Expect = 1.3
Identities = 41/185 (22%), Positives = 63/185 (34%), Gaps = 16/185 (8%)
Query: 414 PAPETPARPLALGPLPRPGLRSARPPRQCRGEHRLGPHAPMPSPRCPGEAQGVTDGRRAS 473
P P +P G+ PR+ R P R E + G
Sbjct: 1215 PGPLSPVARGGSNGGSNVGMEDGERPRRRRHGRAQQQDKPPRFRRLKQERENAARGSEGK 1274
Query: 474 PS------APGGDQDRVSTTPQPTAQPGSGAGPQRPGPTQKRGGRGVRVPEGSPARIAFS 527
PS APG ++ + T P + + P + S + S
Sbjct: 1275 PSLTLPASAPGPEEALTTVTVAPAPRRAAAKSPDLSNQNSDQANEEWET--ASESSDFTS 1332
Query: 528 GRRGGAKAQP--MAEAESLGDRERRDGGGAAGGGAVAQLRAVGQGALCAAPRDSGPRVCA 585
RRG +A P + +++G GGG GGGAV + A+ +G L +D R +
Sbjct: 1333 ERRGDKEAPPPVLLTPKAVGT----PGGG--GGGAVPGISAMSRGDLSQRAKDLSKRSFS 1386
Query: 586 TVESG 590
+ G
Sbjct: 1387 SQRPG 1391
Score = 30.8 bits (68), Expect = 3.8
Identities = 48/191 (25%), Positives = 58/191 (30%), Gaps = 34/191 (17%)
Query: 394 GGEGDADLDATRQAACRDREPAPETP----------ARPLALGPLPRP----------GL 433
GG D A R+R P P A P PL P G+
Sbjct: 762 GGSSSEPFDRHAPAMLRERGTPPVDPKLAWVGDVFTATPAEPRPLTSPLRQAADEDDKGM 821
Query: 434 RSARPPRQCRGEHRLGPHAPMPSPRCPGEAQG----VTDGRRASPSAPGGDQDRVSTTPQ 489
RS PP + L + P PG G R P PG D+ TP
Sbjct: 822 RSETPPVPPPPPY-LASYPGFPENGAPGPPISRFPLEEPGPRPLPWPPGSDEVAKIQTPP 880
Query: 490 PTAQPGSGAGPQRPGPTQKR--------GGRGVRVPEGSPARIAFSGRRGGAKAQPMAEA 541
P +P Q GP R GG+G P G R G+ + +
Sbjct: 881 PKKEPPKEETAQLTGPEAGRKPARGVGSGGQGPPPPRRESRTETRWGPRPGSSRRGIPPE 940
Query: 542 ESLGDRERRDG 552
E G RR G
Sbjct: 941 EP-GAPPRRAG 950
>gi|163965366 nascent polypeptide-associated complex alpha subunit
isoform a [Homo sapiens]
Length = 2078
Score = 55.8 bits (133), Expect = 1e-07
Identities = 88/368 (23%), Positives = 118/368 (32%), Gaps = 59/368 (16%)
Query: 179 PRKQCSQGRPGLPTRTMPRDTGQPTRTML--WDTGQPCVLPQGPAVTPPAFPGVQ----- 231
P +G P P T P G P T + P P P +P A P +
Sbjct: 1000 PATPSPKGAPTPPAVTPPSPKGSPAATPFPKGASTPPAATPPSPKGSPAATPLPKGAPTT 1059
Query: 232 --ETLPSLPVAPGAPGQRGRPSPYSLRVRGPRQDLPHLDGLHGAHDHHGLGHASAQAAQQ 289
TLPS P P +G P+P + P+ P GA + A+ + +
Sbjct: 1060 PAATLPSPKGGPATPSLKGAPTPPAATPPSPKGG-PATPSPKGA----PMPPAATPPSPK 1114
Query: 290 PTRAVQPSLGIPHVVAEELEHSKPGGGRRSRELRPRYRPRTPWLRTVCRTQSPGGGGGQD 349
A P G P A P GG + P+ P TP SP GG
Sbjct: 1115 GGLATPPHKGAPTTPA--ATPPSPKGGLATPP--PKGAPTTP----AATPPSPKGGLATP 1166
Query: 350 PTALGAAALGTRPPRRRGLPLLTDAPVPRRVRALVQLQLRLHVLGGEGDADLDATRQAAC 409
P PP +G L T +P +G A +
Sbjct: 1167 PPKGAPTTPAATPPSPKG-GLATPSP--------------------KGAPTTPAATPPSP 1205
Query: 410 RD--REPAPE-TPARPLALGPLPRPGLRSARP------PRQCRGEHRLGPHAPMP--SPR 458
+ P+P+ P P A P P+ GL + P P + GP P P +P
Sbjct: 1206 KGGLATPSPKGAPTTPAATPPSPKGGLATPSPKGAPTTPAATPPSPKGGPATPPPKGAPT 1265
Query: 459 CPGEAQGVTDGRRASPSAPGGDQDRVSTTPQP-----TAQPGSGAGPQRPGPTQKRGGRG 513
P G A+P G V T P P T+ P P P +G G
Sbjct: 1266 PPAATPPSLKGGLATPPHKGAPNPAVVTPPSPKGGPATSPPKGAPTPPAATPPSPKGSPG 1325
Query: 514 VRVPEGSP 521
P+G+P
Sbjct: 1326 TPPPKGAP 1333
Score = 53.9 bits (128), Expect = 4e-07
Identities = 113/450 (25%), Positives = 142/450 (31%), Gaps = 70/450 (15%)
Query: 179 PRKQCSQGRPGLPTRTMPRDTGQPTRTMLWDTGQPCVLPQGPAVTPPAFPGVQETLP--S 236
P +G P P T P G P T P P PA TPP+ G T P
Sbjct: 1071 PATPSLKGAPTPPAATPPSPKGGPA------TPSPKGAPMPPAATPPSPKGGLATPPHKG 1124
Query: 237 LPVAPGAPGQRGRPSPYSLRVRGPRQDLPHLDGLHGAHDHHGLGHASAQAAQQPTRAVQP 296
P P A PSP P + P GL + A A P
Sbjct: 1125 APTTPAATP----PSPKGGLATPPPKGAPTTPAATPPSPKGGLATPPPKGAPTTPAATPP 1180
Query: 297 S----------LGIPHVVAEELEHSKPGGGRRSRELRPRYRPRTP-----WLRTVCRTQS 341
S G P A K G S + P TP L T +
Sbjct: 1181 SPKGGLATPSPKGAPTTPAATPPSPKGGLATPSPKGAPTTPAATPPSPKGGLATPSPKGA 1240
Query: 342 PGGGGGQDPTALGAAALGTRPPRRRGLPLLTDAPVPRRVRALVQLQLRLHVLGGEGDADL 401
P P+ G A T PP+ G P A P L + G A +
Sbjct: 1241 PTTPAATPPSPKGGPA--TPPPK--GAPTPPAATPPSLKGGLATPPHK----GAPNPAVV 1292
Query: 402 DATRQAACRDREPAPETPARPLALGPLPRPGLRSARPPRQCRGEHRLGPHAPMPSPRCPG 461
P P P A P P+ G PP+ + P +P +P P
Sbjct: 1293 TPPSPKGGPATSPPKGAPTPPAATPPSPK-GSPGTPPPKGAPTPPAVTPPSPKGTPTLPA 1351
Query: 462 EAQGVTDGRRASPSAPGGDQDRVSTTPQPTAQPGSGAGPQRPGPTQKRGGRGVRVPEG-- 519
T + P+ P + TP P A P GP P+ KR G + P+G
Sbjct: 1352 ----TTPSSKGGPTTPSSKE---GPTP-PAATPSHKGGPAMTPPSPKR-GPAIPSPKGDP 1402
Query: 520 -SPARIAFSGRRGGAKAQPMAEAESLGDRERRDGGGAAGGGAVAQLRAVGQGALCAAPRD 578
SPA I S ++ A A P+ R+G G + AV +L AP
Sbjct: 1403 TSPAVIPLSPKK--APATPVT----------REGAATPSKGDLTP-PAVTPVSLKKAPAT 1449
Query: 579 SGPRVCATVESGGIPRDPGGQGH-TLPENT 607
S P+ G P P +G TLP T
Sbjct: 1450 SAPK--------GGPATPSSKGDPTLPAVT 1471
Score = 41.6 bits (96), Expect = 0.002
Identities = 84/376 (22%), Positives = 116/376 (30%), Gaps = 63/376 (16%)
Query: 161 ALLAGPGPIQGGGNWELFPRKQCSQGRPGLPTRTMPRDTGQPTRTMLWDTGQPCVLPQGP 220
A++ P P +GG P +G P P T P G P T P P P
Sbjct: 1290 AVVTPPSP-KGG------PATSPPKGAPTPPAATPPSPKGSP------GTPPPKGAPTPP 1336
Query: 221 AVTPPA---FPGVQETLPSLPVAPGAPGQRGRPSPYSLRVRGPRQDLPHLDGLHGAHDHH 277
AVTPP+ P + T PS P P + P+P P H G
Sbjct: 1337 AVTPPSPKGTPTLPATTPSSKGGPTTPSSKEGPTP-------PAATPSHKGGPAMTPPSP 1389
Query: 278 GLGHASAQAAQQPTRAVQPSLGIPHVVAEELEHSKPGGGRRSRELRPRYRPRTPWLRTVC 337
G A PT L A + + P P + L+
Sbjct: 1390 KRGPAIPSPKGDPTSPAVIPLSPKKAPATPVTREGAATPSKGDLTPPAVTPVS--LKKAP 1447
Query: 338 RTQSPGGGGGQDPTALGAAALGTRPPRRRGLPLLTDAPVPRRVRALVQLQLRLHVLGGEG 397
T +P GG P++ G L P P + P P++V + G
Sbjct: 1448 ATSAPKGGPAT-PSSKGDPTLPAVTP-----PSPKEPPAPKQVATSSSPKKAPATPAPMG 1501
Query: 398 DADLDATRQAACRDREPAPETPARPLALGPLPRPGLRSARPPRQCRGEHRLGPHA-PMPS 456
L A ++ ++ P + P+A P L S + P + L P A +PS
Sbjct: 1502 APTLPAVIPSSPKEVPATPSSRRDPIA----PTATLLSKKTPATLAPKEALIPPAMTVPS 1557
Query: 457 PR------CPGEAQGVTDGRRAS---------------------PSAPGGDQDRVSTTPQ 489
P+ P EA + AS P A + + TP
Sbjct: 1558 PKKTPAIPTPKEAPATPSSKEASSPPAVTPSTYKGAPSPKELLIPPAVTSPSPKEAPTPP 1617
Query: 490 PTAQPGSGAGPQRPGP 505
P GP P P
Sbjct: 1618 AVTPPSPEKGPATPAP 1633
Score = 39.3 bits (90), Expect = 0.011
Identities = 73/316 (23%), Positives = 94/316 (29%), Gaps = 57/316 (18%)
Query: 185 QGRPGLPTRTMPRDTGQPTRTMLWDTGQPCVLPQGPAVTPPAFPGVQETLPSLPVAPGAP 244
+G P P T P G G P+G TP A P PS P P
Sbjct: 1215 KGAPTTPAATPPSPKG----------GLATPSPKGAPTTPAATP------PSPKGGPATP 1258
Query: 245 GQRGRPSPYSLRVRGPRQDLPHLDGLHGAHDHHGLGHASAQAAQQPT--RAVQPSLGIPH 302
+G P+P P P L G H G + + P A P G P
Sbjct: 1259 PPKGAPTP-------PAATPPSLKGGLATPPHKGAPNPAVVTPPSPKGGPATSPPKGAPT 1311
Query: 303 VVAEELEHSKPGGGR---RSRELRPRYRPRTP-WLRTVCRTQSPGGGGGQDPTALGAAAL 358
A K G + P P +P T+ T GG P++
Sbjct: 1312 PPAATPPSPKGSPGTPPPKGAPTPPAVTPPSPKGTPTLPATTPSSKGGPTTPSSKEGPTP 1371
Query: 359 GTRPPRRRGLPLLTDAPVPRRVRALVQLQLRLHVLGGEGDADLDATRQAACRDREPAPET 418
P +G P +T P P+R A + +GD P +
Sbjct: 1372 PAATPSHKGGPAMT-PPSPKRGPA---------IPSPKGD-----------------PTS 1404
Query: 419 PARPLALGPLPRPGLRSARPPRQCRGEHRLGPHAPMPSPRCPGEAQGVTDGRRASPSAPG 478
PA + L P P R + L P A P A G A+PS+ G
Sbjct: 1405 PA-VIPLSPKKAPATPVTREGAATPSKGDLTPPAVTPVSLKKAPATSAPKGGPATPSSKG 1463
Query: 479 GDQDRVSTTPQPTAQP 494
T P P P
Sbjct: 1464 DPTLPAVTPPSPKEPP 1479
Score = 35.4 bits (80), Expect = 0.15
Identities = 47/189 (24%), Positives = 61/189 (32%), Gaps = 30/189 (15%)
Query: 360 TRPPRRRGLPLLTDAPVPRRVRAL-VQLQLRLHVLGGEGDADLDATRQAACRDREPAPE- 417
T PP+ P + + P P+ A Q + AT P+P+
Sbjct: 879 TLPPKETPTPSVVNLPFPKEGPATPAPKQAPALSMTSSSPKKARATPAPKGIPASPSPKG 938
Query: 418 TPARPLALGPLPRPGLRSARPPRQCRGEHRLGPHAPMPSPRCPGEAQGVTDGRRASPSAP 477
P P A P P+ G + P + P P +P P G A+PS
Sbjct: 939 APTPPAATPPSPKGGPATPSP--------KWAPTPPAATPPSP-------KGGPATPSPK 983
Query: 478 GGDQDRVSTTPQP---TAQPGSGAGPQRPGPTQKRGGRGVRVPEGSPARIAFSGRRGGAK 534
G +T P P A P P P T P+GSPA F GA
Sbjct: 984 GAPTPPAATPPSPKGGPATPSPKGAPTPPAVTPPS-------PKGSPAATPFP---KGAS 1033
Query: 535 AQPMAEAES 543
P A S
Sbjct: 1034 TPPAATPPS 1042
Score = 33.5 bits (75), Expect = 0.58
Identities = 34/129 (26%), Positives = 49/129 (37%), Gaps = 26/129 (20%)
Query: 414 PAPE-TPARPLALGPLPRPGLRSARP-PRQCRGEHRLGPHAPMPSPRCPGEAQGVTDGRR 471
P+P+ P P A P P+ G A P P+ + P +P SP +G +
Sbjct: 980 PSPKGAPTPPAATPPSPKGG--PATPSPKGAPTPPAVTPPSPKGSPAATPFPKGASTPPA 1037
Query: 472 ASPSAPGGDQDRVSTTPQPTAQPGSGA--------GPQRPG-----------PTQKRGGR 512
A+P +P G + TP P P + A GP P P +GG
Sbjct: 1038 ATPPSPKGSP---AATPLPKGAPTTPAATLPSPKGGPATPSLKGAPTPPAATPPSPKGGP 1094
Query: 513 GVRVPEGSP 521
P+G+P
Sbjct: 1095 ATPSPKGAP 1103
Score = 32.0 bits (71), Expect = 1.7
Identities = 33/132 (25%), Positives = 47/132 (35%), Gaps = 13/132 (9%)
Query: 416 PETPARPLALGPLPRPGLRSARPPRQCRGEHRLGPHA-PMP--SPRCPGEAQGVTDGRRA 472
P +P A P P+ ++ PP + P A P+P +P P G A
Sbjct: 1016 PPSPKGSPAATPFPKG---ASTPPAATPPSPKGSPAATPLPKGAPTTPAATLPSPKGGPA 1072
Query: 473 SPSAPGGDQDRVSTTPQP-----TAQPGSGAGPQRPGPTQKRGGRGVRVPEGSPARIAFS 527
+PS G +T P P T P P P +GG +G+P A +
Sbjct: 1073 TPSLKGAPTPPAATPPSPKGGPATPSPKGAPMPPAATPPSPKGGLATPPHKGAPTTPAAT 1132
Query: 528 --GRRGGAKAQP 537
+GG P
Sbjct: 1133 PPSPKGGLATPP 1144
Score = 30.8 bits (68), Expect = 3.8
Identities = 32/120 (26%), Positives = 47/120 (39%), Gaps = 21/120 (17%)
Query: 414 PAPETPARPLA---LGP-----LPRPGLRSARPP---RQCRGEHRLGPHAPMPSP--RCP 460
P+P+ PLA L P +P P L A P ++ G AP+ S CP
Sbjct: 712 PSPQNTCAPLATLVLAPEIPKSVPSPSLPPAGTPPGTKKVDGISHTSALAPVASSPKECP 771
Query: 461 GEAQGVTDGRRASPSAPGGDQDRVSTTPQPTAQPGSGAGPQRPGPTQKRGGRGVRVPEGS 520
E G + + ++ G ++ +P P G PQ P K+G G P G+
Sbjct: 772 TEDSGAS-----ATASSKGTLTYLADSPSPL---GVSVSPQTKRPPTKKGSAGPDTPIGN 823
>gi|89363017 alpha 2 type V collagen preproprotein [Homo sapiens]
Length = 1499
Score = 54.3 bits (129), Expect = 3e-07
Identities = 120/489 (24%), Positives = 154/489 (31%), Gaps = 87/489 (17%)
Query: 171 GGGNWELFPRKQCSQGRPGLPT-----RTMPRDTGQP----TRTMLWDTGQPCVLPQGPA 221
GGGN ++ +G PGL R P G P R G+P P+GP
Sbjct: 101 GGGNTNFGRGRKGQKGEPGLVPVVTGIRGRPGPAGPPGSQGPRGERGPKGRPG--PRGPQ 158
Query: 222 VTPPAFPGVQETLPSLPVAPGAPGQRGRPSPYSLRVRGPRQDLPHLDGLHGAHDHHGLGH 281
PGV P P APG PG P P L R + LD G GL
Sbjct: 159 GIDGE-PGV----PGQPGAPGPPGHPSHPGPDGLS-RPFSAQMAGLDEKSGLGSQVGLMP 212
Query: 282 ASA-QAAQQPTRAVQPSLGIPHVVAEELEHSKPGGGRRSRELRPRYRPRTPWLRTVCRTQ 340
S + + +Q G E PG P P P
Sbjct: 213 GSVGPVGPRGPQGLQGQQGGAGPTGPPGEPGDPGPMGPIGSRGPEGPPGKPG-----EDG 267
Query: 341 SPGGGGGQDPTALGAAALGTRPPRRRGLPLLTDAPVPRRVRALVQLQLRLHVLGGEGDAD 400
PG G + P GLP L R + L + + G +G+A
Sbjct: 268 EPGRNGNPGEVGFAGSPGARGFPGAPGLPGLKGH---RGHKGLEGPKGEVGAPGSKGEAG 324
Query: 401 LDATRQA-------------------ACRDREPAPETPARPLALGPLP---------RPG 432
A + A P +P +GPL PG
Sbjct: 325 PTGPMGAMGPLGPRGMPGERGRLGPQGAPGQRGAHGMPGKPGPMGPLGIPGSSGFPGNPG 384
Query: 433 LRSARPPRQCRGEH-------RLGPHAPMPSPRCPGEAQGVTDGRRASPSAPGGDQDRVS 485
++ P RG GP P+ SP PG TDG +P A G +
Sbjct: 385 MKGEAGPTGARGPEGPQGQRGETGPPGPVGSPGLPGAIG--TDG---TPGAKGP-----T 434
Query: 486 TTPQPTAQPGSGAGPQRPGPTQKRGGRGVRVPEGSPARIAFSGRRGGAKAQP-----MAE 540
+P + PGS P PGP G +G+R G P F G G K +P
Sbjct: 435 GSPGTSGPPGSAGPPGSPGPQGSTGPQGIRGQPGDPGVPGFKG-EAGPKGEPGPHGIQGP 493
Query: 541 AESLGDRERRDGGGAAGGGAVAQLRAVGQGALCAAPRDSGPRVCATVESGGIPRDPGGQG 600
G+ +R G G V VG+ AP + G S G+P G QG
Sbjct: 494 IGPPGEEGKR--GPRGDPGTVGPPGPVGER---GAPGNRG-----FPGSDGLPGPKGAQG 543
Query: 601 HTLPENTWG 609
P + G
Sbjct: 544 ERGPVGSSG 552
Score = 47.4 bits (111), Expect = 4e-05
Identities = 101/408 (24%), Positives = 125/408 (30%), Gaps = 74/408 (18%)
Query: 235 PSLPVAPGAP-GQRGRPSPYSLRVRGPRQDLPHLDGLHGAHDHHGLGHASAQAAQQPTRA 293
P P P P G++G P P L GP P G G+ +G A A Q
Sbjct: 802 PLGPPGPAGPTGEKGEPGPRGLV--GP----PGSRGNPGSRGENGPTGAVGFAGPQGPDG 855
Query: 294 VQPSLGIPHVVAEELEHSKPGGGRRSRELRPRYRPRTPWLRTVCRTQSPGGGGG------ 347
G P ++ + PG + P P L+ TQ P G G
Sbjct: 856 QPGVKGEPGEPGQKGDAGSPGPQGLAGSPGPHGPNGVPGLKGGRGTQGPPGATGFPGSAG 915
Query: 348 ----QDPTALGAAALGTRPPRRRGLPLLTDAPVPRRVRALVQLQLRLHVLGGEGDADLDA 403
P A P + G P L P R+ G G
Sbjct: 916 RVGPPGPAGAPGPAGPLGEPGKEGPPGLRGDPGSHG---------RVGDRGPAGPPGGPG 966
Query: 404 TRQAACRDREPAPETPARPLAL----GPLPRPGLRSARP---------------PRQCRG 444
+ D +P P+ P P G + PG R R P G
Sbjct: 967 DKGDPGEDGQPGPDGPPGPAGTTGQRGIVGMPGQRGERGMPGLPGPAGTPGKVGPTGATG 1026
Query: 445 EHRLGPHAPMPSPRCPG-------EAQGVTDGRRASPSAPGGDQDRVSTTPQPTAQPGSG 497
+ GP P+ P G E DG A G DR P P PGS
Sbjct: 1027 DK--GPPGPVGPPGSNGPVGEPGPEGPAGNDGTPGRDGAVGERGDRGD--PGPAGLPGSQ 1082
Query: 498 AGPQRPGP------TQKRGGRGVRVPEGSPARIAFSGRRGGAKAQ-PMAEAESLGDRERR 550
P PGP +RG G R P G P R +G+RG Q P + GDR R
Sbjct: 1083 GAPGTPGPVGAPGDAGQRGDPGSRGPIGPPGR---AGKRGLPGPQGPRGDKGDHGDRGDR 1139
Query: 551 DGGGAAGGGAVAQLRAVGQGALCAAPRDSGPRVCATVESGGIPRDPGG 598
G G G L P +G + A + PR P G
Sbjct: 1140 GQKGHRG--------FTGLQGLPGPPGPNGEQGSAGIPGPFGPRGPPG 1179
Score = 43.5 bits (101), Expect = 6e-04
Identities = 117/521 (22%), Positives = 154/521 (29%), Gaps = 100/521 (19%)
Query: 158 GCEALLAGPGPIQGGGNWELFPRKQCSQGRPGLPTRTMPRDTGQPT--RTMLWDTGQPCV 215
G + PGP+ G P G PG+ P P + +TG P
Sbjct: 357 GAHGMPGKPGPMGPLG----IPGSSGFPGNPGMKGEAGPTGARGPEGPQGQRGETGPP-- 410
Query: 216 LPQGPAVTPPAFPGVQET-----------------LPSLPVAPGAPGQRGRPSPYSLRVR 258
GP V P PG T P PG+PG +G P +R +
Sbjct: 411 ---GP-VGSPGLPGAIGTDGTPGAKGPTGSPGTSGPPGSAGPPGSPGPQGSTGPQGIRGQ 466
Query: 259 GPRQDLPHLDGLHGAHDHHG-------LGHASAQAAQQP--------------------T 291
+P G G G +G + + P
Sbjct: 467 PGDPGVPGFKGEAGPKGEPGPHGIQGPIGPPGEEGKRGPRGDPGTVGPPGPVGERGAPGN 526
Query: 292 RAVQPSLGIPHVVAEELEHSKPGGGRRSRELRPRYRPRTPWLRTV-CRTQSPGGGGGQDP 350
R S G+P + E G RP P L T +PG G +
Sbjct: 527 RGFPGSDGLPGPKGAQGERGPVGSSGPKGSQGDPGRPGEPGLPGARGLTGNPGVQGPEGK 586
Query: 351 TA-LGAAALGTRPPRR-----RGLPLLTDAPVPRRVRALVQLQLRLHVLGGEGDADLDAT 404
LGA RP RG P P P+ G G+A +
Sbjct: 587 LGPLGAPGEDGRPGPPGSIGIRGQPGSMGLPGPKGSSGDPGKP------GEAGNAGVPGQ 640
Query: 405 RQAACRDREPAPETPARPLALGPLPRPGLRSAR----PPRQCRGEHRLGPHAPMPSPRCP 460
R A +D E P GP+ PGL R PP + GP P P
Sbjct: 641 RGAPGKDGEVGPS--------GPVGPPGLAGERGEQGPPGPTGFQGLPGPPGPPGEGGKP 692
Query: 461 GEAQGVTDGRRASPSAPGGDQDRVSTTPQP--TAQPG-----SGAGPQ----RPGPTQKR 509
G+ D P P G++ +P T PG G GP PGP+
Sbjct: 693 GDQGVPGDPGAVGPLGPRGERGNPGERGEPGITGLPGEKGMAGGHGPDGPKGSPGPSGTP 752
Query: 510 GGRGVRVPEGSPARIAFSGRRGGAKAQPMAEAESLGDRERRDGGGAAGG-GAVAQLRAVG 568
G G +G P +G G P + +G++ G G G L G
Sbjct: 753 GDTGPPGLQGMPGERGIAGTPG-----PKGDRGGIGEKGAEGTAGNDGARGLPGPLGPPG 807
Query: 569 QGALCAAPRDSGPRVCATVESGGIPRDPGGQGHTLPENTWG 609
+ GPR V G +PG +G P G
Sbjct: 808 PAGPTGEKGEPGPR--GLVGPPGSRGNPGSRGENGPTGAVG 846
Score = 40.0 bits (92), Expect = 0.006
Identities = 116/476 (24%), Positives = 153/476 (32%), Gaps = 113/476 (23%)
Query: 166 PGPI--QGGGNWELFPRKQCSQGRPGLPTRTMPRDTGQPTRTMLWDTGQPCV--LPQGPA 221
PGP+ +G FP G G P + P + D G+P LP
Sbjct: 515 PGPVGERGAPGNRGFPGSDGLPGPKGAQGERGPVGSSGPKGSQ-GDPGRPGEPGLPGARG 573
Query: 222 VTPPAFPGVQETLPSLPVAP-GAPGQRGRPSPY-SLRVRGPRQDLPHLDGLHGAHDHHGL 279
+T PGVQ P + P GAPG+ GRP P S+ +RG P GL G G
Sbjct: 574 LT--GNPGVQG--PEGKLGPLGAPGEDGRPGPPGSIGIRGQ----PGSMGLPGPKGSSGD 625
Query: 280 GHASAQAAQQPTRAVQPSLGIPHVVAEELEHSKPGGGRRSRELRPRYRPRTPWLRTVCRT 339
+A + + G V PG E P P + +
Sbjct: 626 PGKPGEAGNAGVPGQRGAPGKDGEVGPSGPVGPPGLAGERGEQGP---PGPTGFQGLPGP 682
Query: 340 QSPGGGGGQ--------DPTALGAAALGTRP----PRRRGLPLLTDAPVPRRVRALVQLQ 387
P G GG+ DP A+G LG R P RG P +T P + +
Sbjct: 683 PGPPGEGGKPGDQGVPGDPGAVGP--LGPRGERGNPGERGEPGITGLPGEKGMA------ 734
Query: 388 LRLHVLGGEGDADLDATRQAACRDREPAPETPARPLALGPLPRPGLRSARPPRQCRGEHR 447
GG G + +P P GP PGL+ R G
Sbjct: 735 ------GGHGPDG-----------PKGSPGPSGTPGDTGP---PGLQGMPGERGIAGT-- 772
Query: 448 LGPHAPMPSPRCPGEAQGVTDGRRASPSAPGGDQDRVSTTPQPTAQPGSGAGPQRPGPTQ 507
P P+ G+ G+ G + + G D R P P PG GPT
Sbjct: 773 -------PGPK--GDRGGI--GEKGAEGTAGNDGAR--GLPGPLGPPGPA------GPTG 813
Query: 508 KRGGRGVRVPEGSPARIAFSGRRG--------------GAKAQPMAEAESLGDRERRDGG 553
++G G R G P G RG G QP + E ++ D G
Sbjct: 814 EKGEPGPRGLVGPPGSRGNPGSRGENGPTGAVGFAGPQGPDGQPGVKGEPGEPGQKGDAG 873
Query: 554 GAAGGGAVAQLRAVGQGALCAAPRDSGPRVCATVESGGIPRDPGGQGHTLPENTWG 609
+ G L +P GP G+P GG+G P G
Sbjct: 874 ------------SPGPQGLAGSPGPHGP--------NGVPGLKGGRGTQGPPGATG 909
Score = 34.7 bits (78), Expect = 0.26
Identities = 97/387 (25%), Positives = 121/387 (31%), Gaps = 71/387 (18%)
Query: 158 GCEALLAGPGPIQGGGNWELFPRKQCSQGRPGLPTRT-MPRDTGQPTRTMLWDTGQPCVL 216
G + L PGP G P + +G G P T P G+ V
Sbjct: 876 GPQGLAGSPGPHGPNG----VPGLKGGRGTQGPPGATGFPGSAGR-------------VG 918
Query: 217 PQGPAVTP-PAFPGVQETLPSLPVAPGAPGQRGRPSPYSLRV--RGPR--------QDLP 265
P GPA P PA P + P G PG RG P + RV RGP + P
Sbjct: 919 PPGPAGAPGPAGPLGE------PGKEGPPGLRGDPGSHG-RVGDRGPAGPPGGPGDKGDP 971
Query: 266 HLDGLHGAHDHHGLGHASAQAAQQPTRAVQPSLGIPHVVAEELEHSKPGGGRRSRELRPR 325
DG G G + Q + G+P + K G + + P
Sbjct: 972 GEDGQPGPDGPPGPAGTTGQRGIVGMPGQRGERGMPGLPGPAGTPGKVGPTGATGDKGPP 1031
Query: 326 YRPRTPWLRTVCRTQSPGGGGGQDPTALGAAALGTR----PPRRRGLPLLTDAP-VPRRV 380
P P G G D T A+G R P GLP AP P V
Sbjct: 1032 GPVGPPGSNGPVGEPGPEGPAGNDGTPGRDGAVGERGDRGDPGPAGLPGSQGAPGTPGPV 1091
Query: 381 RALVQLQLRLHVLGGEGDADLDATRQAACRDREPAPETPARPLALGPLPRPGLRSARPPR 440
G GDA + +P P P G + GL + PR
Sbjct: 1092 -------------GAPGDAG---------QRGDPGSRGPIGPP--GRAGKRGLPGPQGPR 1127
Query: 441 QCRGEHRLGPHAPMPSPRCPGEAQGVT-----DGRRASPSAPGGDQDRVSTTPQPTAQPG 495
+G+H R QG+ +G + S PG R P +
Sbjct: 1128 GDKGDHGDRGDRGQKGHRGFTGLQGLPGPPGPNGEQGSAGIPGPFGPRGPPGPVGPSGKE 1187
Query: 496 SGAGPQRP-GPTQKRGGRGVRVPEGSP 521
GP P GP RG G PEG P
Sbjct: 1188 GNPGPLGPIGPPGVRGSVGEAGPEGPP 1214
>gi|32964830 collagen, type VIII, alpha 2 [Homo sapiens]
Length = 703
Score = 53.9 bits (128), Expect = 4e-07
Identities = 111/426 (26%), Positives = 138/426 (32%), Gaps = 90/426 (21%)
Query: 158 GCEALLAGPGPIQ-GGGNWELFPRKQCSQGRPGLPT-RTMPRDTGQP----TRTMLWDTG 211
G + L PGP G + P K +QG PG P + P G+P R + D G
Sbjct: 150 GDQGLRGPPGPPGLPGPSGITIPGKPGAQGVPGPPGFQGEPGPQGEPGPPGDRGLKGDNG 209
Query: 212 Q-----PCVLPQGPAVTPPAFPGVQET-LPSLPVAPGAPGQRGRPSPYSLRVRGPRQD-- 263
P QG A PP PG P L PGAPG +G P V GPR +
Sbjct: 210 VGQPGLPGAPGQGGAPGPPGLPGPAGLGKPGLDGLPGAPGDKGESGPPG--VPGPRGEPG 267
Query: 264 --------------LPHLDGLHGAHDHHGL----GHASAQAAQQPTRAVQPSL------- 298
+P GL G G G PT P L
Sbjct: 268 AVGPKGPPGVDGVGVPGAAGLPGPQGPSGAKGEPGTRGPPGLIGPTGYGMPGLPGPKGDR 327
Query: 299 ---GIPHVVAEELEHSKPGGGRRSRELRPRYRPRTPWLRTVC----RTQSPGGGGGQDPT 351
G+P ++ + E PG E P+ P L R PG G P
Sbjct: 328 GPAGVPGLLGDRGE---PGEDGEPGEQGPQGLGGPPGLPGSAGLPGRRGPPGPKGEAGPG 384
Query: 352 A----------LGAAALGTRP--PRRRGLPLLTDAPVPRRVRALVQLQLR------LHVL 393
G + L +P P RGLP P P + R L
Sbjct: 385 GPPGVPGIRGDQGPSGLAGKPGVPGERGLPGAHGPPGPTGPKGEPGFTGRPGGPGVAGAL 444
Query: 394 GGEGDADLDATRQAACRDREPAPETPARPLALGPLPRPGLRSARPPRQCRGEHRLGPHAP 453
G +GD L P +P GP PGL+ P +G L
Sbjct: 445 GQKGDLGL-----------------PGQPGLRGPSGIPGLQGPAGPIGPQGLPGLKGEPG 487
Query: 454 MPSPRCPGEAQGVTDGRRASPSAPGGDQDRVSTTPQPTAQPGSGAGPQRPGPTQKRGGRG 513
+P P PGE + G A P+ P G T P PG P PG + G G
Sbjct: 488 LPGP--PGEGRAGEPGT-AGPTGPPGVPGSPGITGPP-GPPGPPGPPGAPGAFDETGIAG 543
Query: 514 VRVPEG 519
+ +P G
Sbjct: 544 LHLPNG 549
Score = 53.5 bits (127), Expect = 5e-07
Identities = 118/446 (26%), Positives = 149/446 (33%), Gaps = 78/446 (17%)
Query: 186 GRPGLPTRTMPRDTGQPTRTMLWDTGQPCVLPQGPAVTPPAFPGVQETLPSLPVAPGAPG 245
G PGLP + P GQP G+P + PP PG+ PS PG PG
Sbjct: 126 GPPGLPGKVGP--PGQPGLR-----GEPGIRGDQGLRGPPGPPGLPG--PSGITIPGKPG 176
Query: 246 QRGRPSPYSLRVRGPRQDLPHLDGLHGAHDHHGLGHASAQAA------------QQPTRA 293
+G P P + Q P G G +G+G A P
Sbjct: 177 AQGVPGPPGFQGEPGPQGEPGPPGDRGLKGDNGVGQPGLPGAPGQGGAPGPPGLPGPAGL 236
Query: 294 VQPSL-GIPHVVAEELEHSKPG-GGRRSR--ELRPRYRP-----RTPWLRTVCRTQSPGG 344
+P L G+P ++ E PG G R + P+ P P + Q P G
Sbjct: 237 GKPGLDGLPGAPGDKGESGPPGVPGPRGEPGAVGPKGPPGVDGVGVPGAAGLPGPQGPSG 296
Query: 345 GGGQDPTALGAAALGTRPPRRRGLPLLTDAPVPRRVRALVQLQLRLHVLGGEGDADLDAT 404
G+ T +G P G+P L P P+ R G G L
Sbjct: 297 AKGEPGTRGPPGLIG---PTGYGMPGL---PGPKGDR------------GPAGVPGLLGD 338
Query: 405 RQAACRDREPAPETPARPLALGPLP----RPGLRSARPPRQCRGEHRLGPHAPMPSPRCP 460
R D EP + P LG P GL R P +GE GP P P
Sbjct: 339 RGEPGEDGEPGEQGPQ---GLGGPPGLPGSAGLPGRRGPPGPKGE--AGPGGPPGVPGIR 393
Query: 461 GEAQGVTDGRRASPSAPGGDQDRVSTTPQPTAQPGSGAGPQRPGPTQKRGGRGVRVPEGS 520
G+ QG G P PG PG+ GP PGPT +G G G
Sbjct: 394 GD-QG-PSGLAGKPGVPG-----------ERGLPGA-HGP--PGPTGPKGEPGFTGRPGG 437
Query: 521 PARIAFSGRRG--GAKAQPMAEAESLGDRERRDGGGAAGGGAVAQLRAVGQGALCAAPRD 578
P G++G G QP S G + G G + L+ G+ L P +
Sbjct: 438 PGVAGALGQKGDLGLPGQPGLRGPS-GIPGLQGPAGPIGPQGLPGLK--GEPGLPGPPGE 494
Query: 579 SGPRVCATVESGGIPRDPGGQGHTLP 604
T G P PG G T P
Sbjct: 495 GRAGEPGTAGPTGPPGVPGSPGITGP 520
Score = 44.3 bits (103), Expect = 3e-04
Identities = 57/226 (25%), Positives = 74/226 (32%), Gaps = 34/226 (15%)
Query: 415 APETPARPLALGPLPRP-----GLRSARP----PRQCRGEH----RLGPHAPMPSPRCPG 461
AP +P+ GP+ P G P P +GE + GP P P PG
Sbjct: 39 APVKYIQPMQKGPVGPPFREGKGQYLEMPLPLLPMDLKGEPGPPGKPGPRGPPGPPGFPG 98
Query: 462 EAQGVTDGRRASPSAPGGDQDRVSTTPQPTAQPGSGAGPQRPGPTQK---RGGRGVRVPE 518
+ G P G P PG P +PG + RG +G+R P
Sbjct: 99 KPGMGKPGLHGQPGPAGPPGFSRMGKAGPPGLPGKVGPPGQPGLRGEPGIRGDQGLRGPP 158
Query: 519 G-----SPARIAFSGRRGG----------AKAQPMAEAESLGDRERRDGGGAAGGGAVAQ 563
G P+ I G+ G + P E GDR + G G
Sbjct: 159 GPPGLPGPSGITIPGKPGAQGVPGPPGFQGEPGPQGEPGPPGDRGLKGDNGVGQPGLPG- 217
Query: 564 LRAVGQGALCAAPRDSGPRVCATVESGGIPRDPGGQGHTLPENTWG 609
A GQG P GP G+P PG +G + P G
Sbjct: 218 --APGQGGAPGPPGLPGPAGLGKPGLDGLPGAPGDKGESGPPGVPG 261
Score = 39.3 bits (90), Expect = 0.011
Identities = 103/405 (25%), Positives = 132/405 (32%), Gaps = 64/405 (15%)
Query: 217 PQGPAVTPPAFPGVQETLPSLPV-------APGAPGQRGRPSPYSLRVRGPRQDLPHLDG 269
P GP ++ LP LP+ PG PG RG P P + P P G
Sbjct: 51 PVGPPFREGKGQYLEMPLPLLPMDLKGEPGPPGKPGPRGPPGPPGFPGK-PGMGKP---G 106
Query: 270 LHGAHDHHGLGHASAQAAQQPTRAVQPSLGIPHVVAEELEHSKPGGGRRSRELRPRYRPR 329
LHG G A + +A P G+P V + G + R P
Sbjct: 107 LHGQP-----GPAGPPGFSRMGKAGPP--GLPGKVGPPGQPGLRGEPGIRGDQGLRGPPG 159
Query: 330 TPWLRTVCRTQSPGGGGGQDPTALGAAALGTRPPRRRGLPLLTDAPVPRRVRALVQLQLR 389
P L PG G P GA + PP +G P P P R L
Sbjct: 160 PPGL--------PGPSGITIPGKPGAQGV-PGPPGFQGEPGPQGEPGPPGDRGL------ 204
Query: 390 LHVLGGEGDADLDATRQAACRDREPAPETPARPLALGPLPRPGLRSARPPRQCRGEHRLG 449
+GD + + AP P P G L +PGL +GE G
Sbjct: 205 ------KGDNGVGQPGLPGAPGQGGAPGPPGLPGPAG-LGKPGLDGLPGAPGDKGES--G 255
Query: 450 PHAPMPSPRCPGEAQGVTDGRRASPSAPGGDQDRVSTTPQPTAQPGSGAGPQRPGPTQKR 509
P +P PR GE V G + P G + P P G+ P GP
Sbjct: 256 PPG-VPGPR--GEPGAV--GPKGPPGVDGVGVPGAAGLPGPQGPSGAKGEPGTRGPPGLI 310
Query: 510 GGRGVRVPEGSPARIAFSGRRG-----GAKAQPMAEAESLGDRERRDGGGAAGGGAVAQL 564
G G +P G P G G G + +P + E G++ + GG G
Sbjct: 311 GPTGYGMP-GLPGPKGDRGPAGVPGLLGDRGEPGEDGEP-GEQGPQGLGGPPG------- 361
Query: 565 RAVGQGALCAAPRDSGPRVCATVESGGIPRDPGGQGHTLPENTWG 609
G L GP+ GG P PG +G P G
Sbjct: 362 -LPGSAGLPGRRGPPGPK--GEAGPGGPPGVPGIRGDQGPSGLAG 403
>gi|148536825 alpha 1 type IV collagen preproprotein [Homo sapiens]
Length = 1669
Score = 53.1 bits (126), Expect = 7e-07
Identities = 109/431 (25%), Positives = 142/431 (32%), Gaps = 83/431 (19%)
Query: 158 GCEALLAGPGPIQGGGNWELFPRKQCSQGRPGLPTRTMPRDTGQ-----PTRTMLWDTGQ 212
GC GP+ G P + G PGLP M D G+ P + + G
Sbjct: 124 GCNGTKGERGPLGPPG----LPGFAGNPGPPGLPG--MKGDPGEILGHVPGMLLKGERGF 177
Query: 213 PCVLPQGPAVTPPAFPGVQETL-----PSLPVAPGAPGQRGRPSPYSLRVRGPRQDLPHL 267
P + P P PP PG+Q + P PG PG G L +GP+ D
Sbjct: 178 PGI-PGTPG--PPGLPGLQGPVGPPGFTGPPGPPGPPGPPGEKGQMGLSFQGPKGD---- 230
Query: 268 DGLHGAHDHHGL-GHASAQ-AAQQPTRAVQPSLGIPHV-----VAEELEHSKPG------ 314
G G G+ G A Q T+ + G P V E+ E KPG
Sbjct: 231 KGDQGVSGPPGVPGQAQVQEKGDFATKGEKGQKGEPGFQGMPGVGEKGEPGKPGPRGKPG 290
Query: 315 -GGRRSRELRPRYRPRTPWLRTVCRTQSPGGGGGQ-DPTALGAAALGTRP---------- 362
G + + P + P P + Q P G G+ P +GT P
Sbjct: 291 KDGDKGEKGSPGF-PGEPGYPGLIGRQGPQGEKGEAGPPGPPGIVIGTGPLGEKGERGYP 349
Query: 363 --------PRRRGLPLLTDAPVPRRVRALVQLQLR--LHVLGGEGDADLDATRQAACRDR 412
P +G P L P P + Q G +GD T R
Sbjct: 350 GTPGPRGEPGPKGFPGLPGQPGPPGLPVPGQAGAPGFPGERGEKGDRGFPGTSLPGPSGR 409
Query: 413 EPAPETPARPLALGPLPRPGLRSA------RPPRQCRGEHRLGPHAPMPSPRCPGEAQGV 466
+ P P P GP +PG + PP G P P PG +
Sbjct: 410 DGLPGPPGSP---GPPGQPGYTNGIVECQPGPP---------GDQGPPGIPGQPGFIGEI 457
Query: 467 TDGRRASPSAPGGDQDRVSTTPQPTAQPGSGAGPQRPGPTQKRG--GR----GVRVPEGS 520
+ + S D D P P PG P +PG RG GR GV P+G+
Sbjct: 458 GEKGQKGESCLICDIDGYRGPPGPQGPPGEIGFPGQPGAKGDRGLPGRDGVAGVPGPQGT 517
Query: 521 PARIAFSGRRG 531
P I G +G
Sbjct: 518 PGLIGQPGAKG 528
Score = 51.2 bits (121), Expect = 3e-06
Identities = 125/511 (24%), Positives = 168/511 (32%), Gaps = 112/511 (21%)
Query: 163 LAGPGPIQGGGNWELFPRKQCSQGRPGLPTRT-MPRDTGQPTRTMLWDTGQPCVLPQGPA 221
L GP +G FP Q +G PG P R +P + G GQP + GP
Sbjct: 644 LPGPPGAEGLPGSPGFPGPQGDRGFPGTPGRPGLPGEKGA--------VGQPGIGFPGPP 695
Query: 222 -----------VTPPAFPGVQETLPSLPVAPGAPGQRGRPSPYSLRVRGPRQDLPHLDGL 270
+ PP PG + LP PG GQ+G P ++G LP L G+
Sbjct: 696 GPKGVDGLPGDMGPPGTPG-RPGFNGLPGNPGVQGQKGEPGVGLPGLKG----LPGLPGI 750
Query: 271 HGAHDHHGLGHASAQAAQQPTRAVQPSLGIPHVVAEELEHSKPGGGRRSRELRPRYRPRT 330
G G S+G+P V E PG E P P +
Sbjct: 751 PGTPGEKG------------------SIGVPGVPGEHGAIGPPGLQGIRGEPGPPGLPGS 792
Query: 331 ---PWLRTVCRTQSPGGGGGQDPTALGAAALGTRPPRRRGLPLLTDAPVPRRVRALVQLQ 387
P + + + G GGQ P L G P L D P P+ + L
Sbjct: 793 VGSPGVPGIGPPGARGPPGGQGPPGLSGPPGIKGEKGFPGFPGL-DMPGPKGDKGAQGLP 851
Query: 388 LRLHVLGGEGDADLDATRQAACRDREPAPE-------TPARPLALGPLPRPGLR------ 434
+ G G L + A P + TP +P + GP+ PGL
Sbjct: 852 ---GITGQSGLPGLPGQQGAPGIPGFPGSKGEMGVMGTPGQPGSPGPVGAPGLPGEKGDH 908
Query: 435 ------------------------------------SARPPRQCRGEH-RLGPHAPMPSP 457
S + + +GE ++GP S
Sbjct: 909 GFPGSSGPRGDPGLKGDKGDVGLPGKPGSMDKVDMGSMKGQKGDQGEKGQIGPIGEKGSR 968
Query: 458 RCPGEAQGVT--DGRRASPSAPGGDQDR-VSTTPQPTAQPG---SGAGPQRPGPTQKRGG 511
PG GV DG+ P PG D +S TP PG S G PG ++G
Sbjct: 969 GDPG-TPGVPGKDGQAGQPGQPGPKGDPGISGTPGAPGLPGPKGSVGGMGLPGTPGEKGV 1027
Query: 512 RGVRVPEGSPARIAFSGRRG--GAKAQPMAEAESLGDRERRDGGGAAGGGAVAQLRAVGQ 569
G+ P+GSP G +G G P L E+ D G A G+ + G
Sbjct: 1028 PGIPGPQGSPGLPGDKGAKGEKGQAGPPGIGIPGLRG-EKGDQGIAGFPGSPGEKGEKGS 1086
Query: 570 GALCAAPRDSGPRVCATVESGGIPRDPGGQG 600
+ P P + + S G P PG G
Sbjct: 1087 IGIPGMP--GSPGLKGSPGSVGYPGSPGLPG 1115
Score = 49.7 bits (117), Expect = 8e-06
Identities = 114/470 (24%), Positives = 149/470 (31%), Gaps = 96/470 (20%)
Query: 186 GRPGLP-------------TRTMPRDTGQPTRTMLWDTGQPCVLPQGPAVTPPAFPGVQE 232
G PGLP R P G P DTG P GPA P Q
Sbjct: 565 GHPGLPGPKGSPGSVGLKGERGPPGGVGFPGSR--GDTGPPGPPGYGPA--GPIGDKGQA 620
Query: 233 TLPSLPVAPGAPGQRGRPSPYSLRVRGP--RQDLPHLDGLHGAHDHHGLGHASAQAAQQP 290
P P +PG PG +G P + + GP + LP G G G +
Sbjct: 621 GFPGGPGSPGLPGPKGEPGKI-VPLPGPPGAEGLPGSPGFPGPQGDRGFPGTPGRPGLPG 679
Query: 291 TRAV--QPSLGIPHVVAEELEHSKPGGGRRSRELRPRYRPRTPWLRTVCRTQSPGGGGGQ 348
+ QP +G P + PG ++ P P P + PG G Q
Sbjct: 680 EKGAVGQPGIGFPGPPGPKGVDGLPG------DMGPPGTPGRPGFNGL-----PGNPGVQ 728
Query: 349 DPTALGAAALGTRPPRRRGLPLLTDAPVPRRVRALVQLQLRLHVLGGEGDADLDATRQAA 408
L P +GLP L P + + + G G L R
Sbjct: 729 GQKGEPGVGL----PGLKGLPGLPGIPGTPGEKGSIGVPGVPGEHGAIGPPGLQGIRG-- 782
Query: 409 CRDREPAPETPARPLALGPLPRPGLR--SARPPRQCRGEHRLG--------------PHA 452
EP P P P ++G PG+ AR P +G L P
Sbjct: 783 ----EPGP--PGLPGSVGSPGVPGIGPPGARGPPGGQGPPGLSGPPGIKGEKGFPGFPGL 836
Query: 453 PMPSPRCPGEAQGVTD-----------GRRASPSAPG-----GDQDRVSTTPQPTAQPGS 496
MP P+ AQG+ G++ +P PG G+ + T QP PG
Sbjct: 837 DMPGPKGDKGAQGLPGITGQSGLPGLPGQQGAPGIPGFPGSKGEMGVMGTPGQP-GSPGP 895
Query: 497 GAGPQRPGPTQKRGGRGVRVPEGSPARIAFSGRRG--GAKAQPMAEAESLGDRERRDGGG 554
P PG G G P G P G +G G +P G ++ D G
Sbjct: 896 VGAPGLPGEKGDHGFPGSSGPRGDP---GLKGDKGDVGLPGKP-------GSMDKVDMGS 945
Query: 555 AAG----GGAVAQLRAVGQGALCAAPRDSGPRVCATVESGGIPRDPGGQG 600
G G Q+ +G+ P P V G P PG +G
Sbjct: 946 MKGQKGDQGEKGQIGPIGEKGSRGDP--GTPGVPGKDGQAGQPGQPGPKG 993
Score = 48.5 bits (114), Expect = 2e-05
Identities = 95/349 (27%), Positives = 118/349 (33%), Gaps = 56/349 (16%)
Query: 224 PPAFPGV--QETLPSLPV-----APGAPGQRGRPSPYSL---RVRGP--RQDLPHLDGLH 271
P FPG+ Q P LPV APG PG+RG + GP R LP G
Sbjct: 360 PKGFPGLPGQPGPPGLPVPGQAGAPGFPGERGEKGDRGFPGTSLPGPSGRDGLPGPPGSP 419
Query: 272 GAHDHHGLGHASAQAAQQPTRAVQPS--LGIPHVVAEELEHSKPGGGRRSRELRPRYRPR 329
G G + + P P G P + E E + G ++ P
Sbjct: 420 GPPGQPGYTNGIVECQPGPPGDQGPPGIPGQPGFIGEIGEKGQKGESCLICDIDGYRGPP 479
Query: 330 TPWLRTVCRTQSPGG--GGGQDPTALGAAALGTRP-----PRRRGLPLLTDAPVPRRVRA 382
P Q P G G P A G L R P +G P L P +
Sbjct: 480 GP--------QGPPGEIGFPGQPGAKGDRGLPGRDGVAGVPGPQGTPGLIGQPGAKGEPG 531
Query: 383 LVQLQLRLHVLGGEGDADLDATRQAACRDREPAPETPARPLALGPLPRPG---LRSARPP 439
LRL G +GD Q R +P P GP PG L+ R P
Sbjct: 532 EFYFDLRLK--GDKGDPGFPG--QPGMTGRAGSPGRDGHPGLPGPKGSPGSVGLKGERGP 587
Query: 440 RQ------CRGEHRLGPHAPM---PSPRCPGEAQGVTDGRRASPSAPG--GDQDRVSTTP 488
RG+ GP P P+ + Q G SP PG G+ ++ P
Sbjct: 588 PGGVGFPGSRGD--TGPPGPPGYGPAGPIGDKGQAGFPGGPGSPGLPGPKGEPGKIVPLP 645
Query: 489 QPTAQPGSGAGPQRPGPTQKRGGRGVRVPEGSPARIAFSGRRGGAKAQP 537
P G P PGP +G RG G+P R G + GA QP
Sbjct: 646 GPPGAEGLPGSPGFPGP---QGDRGF---PGTPGRPGLPGEK-GAVGQP 687
Score = 47.8 bits (112), Expect = 3e-05
Identities = 91/353 (25%), Positives = 128/353 (36%), Gaps = 70/353 (19%)
Query: 186 GRPGLPTRTMPRDTGQPTRTMLWDTGQPCVLPQG-PAV--TP--PAFPGVQETLPSLPVA 240
G PG+P + GQP GQP P+G P + TP P PG + ++ + +
Sbjct: 972 GTPGVPGKD--GQAGQP--------GQPG--PKGDPGISGTPGAPGLPGPKGSVGGMGL- 1018
Query: 241 PGAPGQRGRPSPYSLRVRGPRQDLPHLDGLHGAHDHHGLGHASAQAAQQPTRAVQPSLGI 300
PG PG++G P + GP Q P L G GA G +A P +GI
Sbjct: 1019 PGTPGEKGVPG-----IPGP-QGSPGLPGDKGAKGEKG-------------QAGPPGIGI 1059
Query: 301 PHVVAEELEHSKPGGGRRSRELRPRYRPRTPWLRTVCRTQSPGGGGGQDPTALGAAALGT 360
P + E+ + G E + P + SPG G P ++G
Sbjct: 1060 PGLRGEKGDQGIAGFPGSPGEKGEKGSIGIPGM-----PGSPGLKGS--PGSVGYPGSPG 1112
Query: 361 RPPRR--RGLPLLTDAPVPRRVRALVQLQLRLHVLGGEGDADLDATRQAACRDREPA--- 415
P + +GLP L P + L G +G+ D +A EP
Sbjct: 1113 LPGEKGDKGLPGLDGIPGVKGEAGLPGTPGPTGPAGQKGEPGSDGIPGSAGEKGEPGLPG 1172
Query: 416 ------PETPARPLALGPLPRPGLRSARPPRQCRGEHR-LGPHAPMPSPRCPGEAQGVTD 468
P + G + PGL + +GE +GP P P PG T+
Sbjct: 1173 RGFPGFPGAKGDKGSKGEVGFPGLAGSPGIPGSKGEQGFMGPPGPQGQPGLPGSPGHATE 1232
Query: 469 GRRASPSAPGGDQDRVSTTPQPTAQPGSGAGPQRPGPTQKRGGRGVRVPEGSP 521
G P GD+ P QPG P GP G GV+ +G+P
Sbjct: 1233 G-------PKGDRG-------PQGQPGLPGLPGPMGPPGLPGIDGVKGDKGNP 1271
Score = 40.8 bits (94), Expect = 0.004
Identities = 104/425 (24%), Positives = 140/425 (32%), Gaps = 85/425 (20%)
Query: 166 PGPIQGGGNWELFPRKQCSQGRPGLP----TRTMPRDTGQPTRTMLWDTGQPCV-LP--- 217
PGP G L P +G PG+P + +P D G + G P + +P
Sbjct: 1007 PGPKGSVGGMGL-PGTPGEKGVPGIPGPQGSPGLPGDKG--AKGEKGQAGPPGIGIPGLR 1063
Query: 218 -----QGPAVTP--PAFPGVQETLPSLPVAPGAPGQRGRPS----PYSLRVRGPRQD--L 264
QG A P P G + ++ +P PG+PG +G P P S + G + D L
Sbjct: 1064 GEKGDQGIAGFPGSPGEKGEKGSI-GIPGMPGSPGLKGSPGSVGYPGSPGLPGEKGDKGL 1122
Query: 265 PHLDGLHGAHDHHGLGHASAQAAQQPTRAVQPSLGIPHVVAEELEHSKPG-------GGR 317
P LDG+ G GL + S GIP E+ E PG G +
Sbjct: 1123 PGLDGIPGVKGEAGLPGTPGPTGPAGQKGEPGSDGIPGSAGEKGEPGLPGRGFPGFPGAK 1182
Query: 318 RSRELRPRY-------RPRTPWLRTVCRTQSPGGGGGQD--PTALGAAALGTRPPR-RRG 367
+ + P P + P G GQ P + G A G + R +G
Sbjct: 1183 GDKGSKGEVGFPGLAGSPGIPGSKGEQGFMGPPGPQGQPGLPGSPGHATEGPKGDRGPQG 1242
Query: 368 LPLLTDAPVPRRVRALVQLQLRLHVLGGEGDADLDATRQAACRDREPAPETPARPLALGP 427
P L P P +G G +D + + P P P GP
Sbjct: 1243 QPGLPGLPGP---------------MGPPGLPGIDGV-----KGDKGNPGWPGAPGVPGP 1282
Query: 428 LPRPGLRSARPPRQCRGEHRLGPHAPMPSPRCPG--------EAQGV--------TDGRR 471
PG + P G M P PG QG+ G +
Sbjct: 1283 KGDPGFQGM--PGIGGSPGITGSKGDMGPPGVPGFQGPKGLPGLQGIKGDQGDQGVPGAK 1340
Query: 472 ASPSAPG--GDQDRVS---TTPQPTAQPGSGAGPQRPGPTQKRGGRGVRVPEGSPARIAF 526
P PG G D + P P PG PGP ++G G+ G P F
Sbjct: 1341 GLPGPPGPPGPYDIIKGEPGLPGPEGPPGLKGLQGLPGPKGQQGVTGLVGIPGPPGIPGF 1400
Query: 527 SGRRG 531
G G
Sbjct: 1401 DGAPG 1405
Score = 36.6 bits (83), Expect = 0.069
Identities = 29/93 (31%), Positives = 37/93 (39%), Gaps = 7/93 (7%)
Query: 163 LAGPGPIQGGGNWELFPRKQCSQGRPGLPTRTMPRDTGQPTRTMLWDTGQPCVLPQGPAV 222
LAG I G + F QG+PGLP P + + GQP + +
Sbjct: 1196 LAGSPGIPGSKGEQGFMGPPGPQGQPGLPGS--PGHATEGPKGDRGPQGQPGLPGLPGPM 1253
Query: 223 TPPAFPGVQETL-----PSLPVAPGAPGQRGRP 250
PP PG+ P P APG PG +G P
Sbjct: 1254 GPPGLPGIDGVKGDKGNPGWPGAPGVPGPKGDP 1286
Score = 32.0 bits (71), Expect = 1.7
Identities = 30/98 (30%), Positives = 34/98 (34%), Gaps = 14/98 (14%)
Query: 449 GPHAPMPSPRCPGEA--QGV--TDGRRASPSAPGGDQDRVSTTPQPTAQPGSGAGPQRPG 504
GP P P G+ G+ T G R P A G P PG P PG
Sbjct: 67 GPEGPQGPPGQKGDTGEPGLPGTKGTRGPPGASG-----YPGNPGLPGIPGQDGPPGPPG 121
Query: 505 PTQKRGGRGVRVPEGSPARIAFSGRRG-----GAKAQP 537
G +G R P G P F+G G G K P
Sbjct: 122 IPGCNGTKGERGPLGPPGLPGFAGNPGPPGLPGMKGDP 159
Score = 31.2 bits (69), Expect = 2.9
Identities = 116/486 (23%), Positives = 146/486 (30%), Gaps = 88/486 (18%)
Query: 142 HDEEADGLVRALLQDSGCEALLAGPGPIQGGGNWELFPRKQCSQGRPGLPTRTMPRDTGQ 201
H+E + + SGC ++G P Q G PG+ P+ G
Sbjct: 19 HEEHSRAAAKGGCAGSGCGK--CDCHGVKGQKGERGLPGLQGVIGFPGMQGPEGPQ--GP 74
Query: 202 PTRTMLWDTGQPCVLPQGPAVTPPAFPGVQETLPSLPVAPGAPGQRGRPSPYSL----RV 257
P + DTG+P + PP G P P PG PGQ G P P +
Sbjct: 75 PGQK--GDTGEPGLPGTKGTRGPPGASGY----PGNPGLPGIPGQDGPPGPPGIPGCNGT 128
Query: 258 RGPRQDL--PHLDGLHGAHDHHGLGHASAQAAQQPTRAVQPSLGIPHVVAEEL--EHSKP 313
+G R L P L G G GL P P + HV L E P
Sbjct: 129 KGERGPLGPPGLPGFAGNPGPPGL----------PGMKGDPGEILGHVPGMLLKGERGFP 178
Query: 314 GGGRRSRELRPRYRPRTPWLRTVCRTQSPGGGGGQDPTALGAAALGTRPPRRRGLPLLTD 373
G P TP PG G Q P PP G P
Sbjct: 179 G------------IPGTP--------GPPGLPGLQGPVG---------PPGFTGPPGPPG 209
Query: 374 APVPRRVRALVQLQLRLHVLGGEGDADLDATRQAACRDREPAPETPARPLALGPLPRPGL 433
P P + Q+ L G +GD P A+ G G
Sbjct: 210 PPGPPGEKG----QMGLSFQGPKGDKGDQGV------SGPPGVPGQAQVQEKGDFATKGE 259
Query: 434 RSARPPRQCRGEHRLGPHAP--MPSPRCPGEAQGVTDGRRASPSAPG-----------GD 480
+ + +G +G P PR G G + SP PG G
Sbjct: 260 KGQKGEPGFQGMPGVGEKGEPGKPGPRGKPGKDG-DKGEKGSPGFPGEPGYPGLIGRQGP 318
Query: 481 QDRVSTTPQPTAQPGSGAGPQRPGPTQKRGGRGVRVPEGSPARIAFSGRRG--GAKAQPM 538
Q P PG G G +RG G P G P F G G G P+
Sbjct: 319 QGEKGEA-GPPGPPGIVIGTGPLGEKGERGYPGTPGPRGEPGPKGFPGLPGQPGPPGLPV 377
Query: 539 -AEAESLGDRERRDGGGAAGGGAVAQLRAVGQGALCAAPRDSGPRVCATVESGGI---PR 594
+A + G R G G + G+ L P GP +G + P
Sbjct: 378 PGQAGAPGFPGERGEKGDRGFPGTSLPGPSGRDGLPGPPGSPGPPGQPGYTNGIVECQPG 437
Query: 595 DPGGQG 600
PG QG
Sbjct: 438 PPGDQG 443
>gi|98985810 alpha 1 type XI collagen isoform B preproprotein [Homo
sapiens]
Length = 1818
Score = 52.0 bits (123), Expect = 2e-06
Identities = 121/484 (25%), Positives = 153/484 (31%), Gaps = 83/484 (17%)
Query: 167 GPIQGGGNWELFPRKQCSQGRPGLPTRTMPRDTGQPT-----RTMLWDTGQPCVLPQGPA 221
GP +G + FP +G G+ + PR PT R TG+P
Sbjct: 862 GP-KGSTGFPGFPGANGEKGARGVAGKPGPRGQRGPTGPRGSRGARGPTGKPGPKGTSGG 920
Query: 222 VTPPAFPGVQETLPSLPVAP-GAPGQRGRPSPYSLRVRGPRQD-LPHLDGLHGAHDHHGL 279
PP PG E P P P G PG +G P P P +D LP G G G
Sbjct: 921 DGPPGPPG--ERGPQGPQGPVGFPGPKGPPGP-------PGKDGLPGHPGQRGETGFQGK 971
Query: 280 ----GHASAQAAQQPTRAVQP--SLGIPHVVAEELEHSKPGG-GRRSRELRPRYRPRTPW 332
G Q PT P G P E PG G+ + P
Sbjct: 972 TGPPGPGGVVGPQGPTGETGPIGERGHPGPPGPPGEQGLPGAAGKEGAKGDP-------- 1023
Query: 333 LRTVCRTQSPGGGGGQDPTALGAAALGTRP-PRRRGLPLLTDAPVPRRVRALVQLQLRLH 391
P G G+D A G R P RGLP AP ++ Q
Sbjct: 1024 --------GPQGISGKDGPA------GLRGFPGERGLPGAQGAP---GLKGGEGPQGPPG 1066
Query: 392 VLGGEGDADLDATRQAACRDREPAPETPARPLALGPLPRPGLRSARPPRQCRGEHRLGPH 451
+G G+ T P P+ P GP G + P+ G +
Sbjct: 1067 PVGSPGERGSAGTAGPIGLPGRPGPQGPP-----GPAGEKGAPGEKGPQGPAGRDGVQGP 1121
Query: 452 APMPSPRCPGEAQGVTD--GRRASPSAPGGDQDRVSTTPQ-------PTAQPGSGAGPQR 502
+P P P + G G P G D+ P P PG G
Sbjct: 1122 VGLPGPAGPAGSPGEDGDKGEIGEPGQKGSKGDKGENGPPGPPGLQGPVGAPGIAGGDGE 1181
Query: 503 PGPT------QKRGGRGVRVPEGSPARIAFSGRRG--GAKAQ-----PMAEAESLGDRER 549
PGP ++G G R G P I G G G K + PM G R
Sbjct: 1182 PGPRGQQGMFGQKGDEGARGFPGPPGPIGLQGLPGPPGEKGENGDVGPMGPPGPPGPRGP 1241
Query: 550 RDGGGAAG----GGAVAQLRAVGQGALCAAPRDSGPRVCATVESGGIPRDPGGQGHTLPE 605
+ GA G G+V + VG+ + GP A V GG + G +G P
Sbjct: 1242 QGPNGADGPQGPPGSVGSVGGVGEKGEPGEAGNPGPPGEAGV--GGPKGERGEKGEAGPP 1299
Query: 606 NTWG 609
G
Sbjct: 1300 GAAG 1303
Score = 41.2 bits (95), Expect = 0.003
Identities = 51/201 (25%), Positives = 69/201 (34%), Gaps = 32/201 (15%)
Query: 425 LGPLPRPGLRSARPPRQCRGEHRLGPHAPMPSPRCPGEAQGVTD----GRRASPSAPGGD 480
+GP+ PG R P+ G GP P P G GV + G +P PG
Sbjct: 1227 VGPMGPPGPPGPRGPQGPNGAD--GPQGP---PGSVGSVGGVGEKGEPGEAGNPGPPG-- 1279
Query: 481 QDRVSTTPQPTAQPGSGAGPQRPGPTQKRGGRGVRVPEGSPARIAFSGRRGGAKAQPMAE 540
+ V + G P GP +G G P+G+P + F G G A
Sbjct: 1280 EAGVGGPKGERGEKGEAGPPGAAGPPGAKGPPGDDGPKGNPGPVGFPGDPGPPGEPGPAG 1339
Query: 541 AESLGDRERRDG----------GGAAG-----------GGAVAQLRAVGQGALCAAPRDS 579
+ +G + DG G AG G A A+ R +GA A +
Sbjct: 1340 QDGVGGDKGEDGDPGQPGPPGPSGEAGPPGPPGKRGPPGAAGAEGRQGEKGAKGEAGAEG 1399
Query: 580 GPRVCATVESGGIPRDPGGQG 600
P V G PG +G
Sbjct: 1400 PPGKTGPVGPQGPAGKPGPEG 1420
Score = 38.9 bits (89), Expect = 0.014
Identities = 56/202 (27%), Positives = 72/202 (35%), Gaps = 13/202 (6%)
Query: 411 DREPAPETPARPLALGPLPRPGLRSARPPRQCRGEHRLGPHAPMPSPRCPGEAQGVTDGR 470
DR P P P P A G LP P P + G+ GP +AQ +
Sbjct: 482 DRGP-PGRPGLPGADG-LPGPPGTMLMLPFRYGGDGSKGPTISAQE----AQAQAILQQA 535
Query: 471 RASPSAPGGDQDRVSTTPQPTAQPGSGAGPQRPGPTQKRGGRGVRVPEGSPARIAFSGRR 530
R + P G ++ P P PGS G +G RGV+ P G + GR
Sbjct: 536 RIALRGPPGPMG-LTGRPGPVGGPGSSGAKGESGDPGPQGPRGVQGPPGPTGKPGKRGRP 594
Query: 531 G--GAKAQPMAEAESLGDRERRDGGGAAGGGAVAQLRAVGQGALCAAPRDSGPR-VCATV 587
G G + P E + GDR G G R G P D G R +
Sbjct: 595 GADGGRGMP-GEPGAKGDRGFDGLPGLPGDKGHRGER--GPQGPPGPPGDDGMRGEDGEI 651
Query: 588 ESGGIPRDPGGQGHTLPENTWG 609
G+P + G +G P T G
Sbjct: 652 GPRGLPGEAGPRGLLGPRGTPG 673
Score = 38.5 bits (88), Expect = 0.018
Identities = 105/453 (23%), Positives = 132/453 (29%), Gaps = 105/453 (23%)
Query: 138 QQGGHDEEADGLVRALLQDSGCEALLAGPGPI-QGGGNWELFPRKQCSQGRPGLPTRTMP 196
QQG ++ D R G L PGP + G N ++ P G PG P P
Sbjct: 1187 QQGMFGQKGDEGARGFPGPPGPIGLQGLPGPPGEKGENGDVGP-----MGPPGPPGPRGP 1241
Query: 197 RDTGQPTRTMLWDTGQPCVLPQGPAVTPPAFPGVQETLPSLPVAPGAPGQRGRPSPYSLR 256
+ PQGP + + GV E G PG+ G P P
Sbjct: 1242 QGPNGADG------------PQGPPGSVGSVGGVGEK--------GEPGEAGNPGP---- 1277
Query: 257 VRGPRQDLPHLDGLHGAHDHHG-LGHASAQAAQQPTRAVQPSLGIPHVVAEELEHSKPGG 315
P G+ G G G A A P A P ++ PG
Sbjct: 1278 --------PGEAGVGGPKGERGEKGEAGPPGAAGPPGAKGPP-------GDDGPKGNPGP 1322
Query: 316 GRRSRELRPRYRPRTPWLRTVCRTQSPGGGGGQD-PTALGAAALGTRPPRRRGLPLLTDA 374
+ P P V + G GQ P A PP +RG P
Sbjct: 1323 VGFPGDPGPPGEPGPAGQDGVGGDKGEDGDPGQPGPPGPSGEAGPPGPPGKRGPP----- 1377
Query: 375 PVPRRVRALVQLQLRLHVLGGEGDADLDATRQAACRDREPAPETPARPLALGPLPRPGLR 434
G EG + A + P P P GP +PG
Sbjct: 1378 ----------------GAAGAEGRQGEKGAKGEAGAEGPPGKTGPVGPQ--GPAGKPGPE 1419
Query: 435 SARPPRQCRGEHRL-------GPHAPMPSPRCPG-EAQGVTDGRRASPSAPG-------- 478
R GE L GP PM P PG + + G + P G
Sbjct: 1420 GLRGIPGPVGEQGLPGAAGQDGPPGPMGPPGLPGLKGDPGSKGEKGHPGLIGLIGPPGEQ 1479
Query: 479 ---GDQDRVSTTPQPTAQPGSG----AGPQRP-------GPTQKRGGRGVRVPEGSPARI 524
GD+ T P A+ G AGP P GP +G +G P G
Sbjct: 1480 GEKGDRGLPGTQGSPGAKGDGGIPGPAGPLGPPGPPGLPGPQGPKGNKGSTGPAGQKGDS 1539
Query: 525 AFSGRRG-----GAKAQPMAEAESLGDRERRDG 552
G G G QP+ S R +G
Sbjct: 1540 GLPGPPGSPGPPGEVIQPLPILSSKKTRRHTEG 1572
Score = 38.1 bits (87), Expect = 0.024
Identities = 63/226 (27%), Positives = 79/226 (34%), Gaps = 32/226 (14%)
Query: 393 LGGEGDADLDATRQAACRDREPAPETPARPLALGPLPRPGLRSARPPRQCRGEHRLGPHA 452
+G G+ + + A +P P A G L PGL P RQ GP
Sbjct: 816 IGPRGEDGPEGPKGRAGPTGDPGPSGQAGEK--GKLGVPGL-PGYPGRQ-------GPKG 865
Query: 453 PMPSPRCPGEAQGVTDGRRASPSAPGGDQDRVSTTPQ-------PTAQPG-----SGAGP 500
P PG A G G R PG R T P+ PT +PG G GP
Sbjct: 866 STGFPGFPG-ANG-EKGARGVAGKPGPRGQRGPTGPRGSRGARGPTGKPGPKGTSGGDGP 923
Query: 501 QRPGPTQKRGGRGVRVPEGSPARIAFSGRRG--GAKAQPMAEAES--LGDRERRDGGGAA 556
PGP +RG +G + P G P G G G P E+ G GG
Sbjct: 924 --PGPPGERGPQGPQGPVGFPGPKGPPGPPGKDGLPGHPGQRGETGFQGKTGPPGPGGVV 981
Query: 557 G-GGAVAQLRAVGQGALCAAPRDSGPR-VCATVESGGIPRDPGGQG 600
G G + +G+ P G + + G DPG QG
Sbjct: 982 GPQGPTGETGPIGERGHPGPPGPPGEQGLPGAAGKEGAKGDPGPQG 1027
Score = 37.4 bits (85), Expect = 0.040
Identities = 113/465 (24%), Positives = 143/465 (30%), Gaps = 54/465 (11%)
Query: 188 PGLPTRTMPRDT---GQPTRTMLWDTGQPCVLPQGPAVTPPAFPGVQETLPSLPVAPGAP 244
PG+P T +T G G+P V+ G V P P + P G
Sbjct: 415 PGVPAETDITETSINGHGAYGEKGQKGEPAVVEPGMLVEGPPGPAGPAGIMGPPGLQGPT 474
Query: 245 GQRGRPSPYSLRVRGP--RQDLPHLDGLHGAHD--------HHGLGHA----SAQAAQQP 290
G G P RGP R LP DGL G + G G SAQ AQ
Sbjct: 475 GPPGDPGD-----RGPPGRPGLPGADGLPGPPGTMLMLPFRYGGDGSKGPTISAQEAQAQ 529
Query: 291 TRAVQPSL---GIPHVVAEELEHSKPGGGRRSRELRPRYRPRTPWLRTVCRTQSPGGGGG 347
Q + G P + GG S P R V P G G
Sbjct: 530 AILQQARIALRGPPGPMGLTGRPGPVGGPGSSGAKGESGDPGPQGPRGVQGPPGPTGKPG 589
Query: 348 QD--PTALGAAALGTRPPRR--RGLPLLTDAPVPRRVRALVQLQLRLHVLGGEGDADLDA 403
+ P A G + P + RG L P + R Q G +G D
Sbjct: 590 KRGRPGADGGRGMPGEPGAKGDRGFDGLPGLPGDKGHRGERGPQGPPGPPGDDGMRGEDG 649
Query: 404 TRQAACRDREPAPETPARPLALGPLP-RPGLRSARPPRQCRGEHRLGPHAPMPSPRCPGE 462
E P P P +PG+ P +G +GP P P PG+
Sbjct: 650 EIGPRGLPGEAGPRGLLGPRGTPGAPGQPGMAGVDGPPGPKGN--MGPQGE-PGP--PGQ 704
Query: 463 AQGVTDGRRASPSAPGGDQDRVSTTPQP--TAQPGSGAGPQRPGPTQKRGGRGVRVPEGS 520
P P G +P PG+ P PG + G +G P G
Sbjct: 705 QGNPGPQGLPGPQGPIGPPGEKGPQGKPGLAGLPGADGPPGHPGKEGQSGEKGALGPPGP 764
Query: 521 PARIAFSGRRG--------GAKAQPMAEAESLGDRERRDGGGAAGGGAVAQLRAVGQG-- 570
I + G RG G K + E + D G G V Q+ G+
Sbjct: 765 QGPIGYPGPRGVKGADGVRGLKGSKGEKGEDGFPGFKGDMGLKGDRGEVGQIGPRGEDGP 824
Query: 571 ----ALCAAPRDSGPRVCATVESG--GIPRDPGGQGHTLPENTWG 609
D GP A E G G+P PG G P+ + G
Sbjct: 825 EGPKGRAGPTGDPGPSGQAG-EKGKLGVPGLPGYPGRQGPKGSTG 868
Score = 30.0 bits (66), Expect = 6.5
Identities = 40/155 (25%), Positives = 64/155 (41%), Gaps = 23/155 (14%)
Query: 179 PRKQCSQGRPGLP-TRTMPR---DTGQPTRT-MLWDTGQPCVL-PQGP----AVTPPAFP 228
P +Q +G GLP T+ P D G P L G P + PQGP T PA
Sbjct: 1476 PGEQGEKGDRGLPGTQGSPGAKGDGGIPGPAGPLGPPGPPGLPGPQGPKGNKGSTGPAGQ 1535
Query: 229 GVQETLPSLPVAPGAPGQRGRPSPYSLRVRGPRQDLPHLDGLHGAHDHHGLGHASAQAAQ 288
LP P +PG PG+ +P P + ++ H +G+ D + L ++
Sbjct: 1536 KGDSGLPGPPGSPGPPGEVIQPLP----ILSSKKTRRHTEGMQADADDNILDYSD----- 1586
Query: 289 QPTRAVQPSLGIPHVVAEELEHSKPGGGRRSRELR 323
++ G + + +++EH K G ++ R
Sbjct: 1587 ----GMEEIFGSLNSLKQDIEHMKFPMGTQTNPAR 1617
>gi|98985808 alpha 1 type XI collagen isoform C preproprotein [Homo
sapiens]
Length = 1767
Score = 52.0 bits (123), Expect = 2e-06
Identities = 121/484 (25%), Positives = 153/484 (31%), Gaps = 83/484 (17%)
Query: 167 GPIQGGGNWELFPRKQCSQGRPGLPTRTMPRDTGQPT-----RTMLWDTGQPCVLPQGPA 221
GP +G + FP +G G+ + PR PT R TG+P
Sbjct: 811 GP-KGSTGFPGFPGANGEKGARGVAGKPGPRGQRGPTGPRGSRGARGPTGKPGPKGTSGG 869
Query: 222 VTPPAFPGVQETLPSLPVAP-GAPGQRGRPSPYSLRVRGPRQD-LPHLDGLHGAHDHHGL 279
PP PG E P P P G PG +G P P P +D LP G G G
Sbjct: 870 DGPPGPPG--ERGPQGPQGPVGFPGPKGPPGP-------PGKDGLPGHPGQRGETGFQGK 920
Query: 280 ----GHASAQAAQQPTRAVQP--SLGIPHVVAEELEHSKPGG-GRRSRELRPRYRPRTPW 332
G Q PT P G P E PG G+ + P
Sbjct: 921 TGPPGPGGVVGPQGPTGETGPIGERGHPGPPGPPGEQGLPGAAGKEGAKGDP-------- 972
Query: 333 LRTVCRTQSPGGGGGQDPTALGAAALGTRP-PRRRGLPLLTDAPVPRRVRALVQLQLRLH 391
P G G+D A G R P RGLP AP ++ Q
Sbjct: 973 --------GPQGISGKDGPA------GLRGFPGERGLPGAQGAP---GLKGGEGPQGPPG 1015
Query: 392 VLGGEGDADLDATRQAACRDREPAPETPARPLALGPLPRPGLRSARPPRQCRGEHRLGPH 451
+G G+ T P P+ P GP G + P+ G +
Sbjct: 1016 PVGSPGERGSAGTAGPIGLPGRPGPQGPP-----GPAGEKGAPGEKGPQGPAGRDGVQGP 1070
Query: 452 APMPSPRCPGEAQGVTD--GRRASPSAPGGDQDRVSTTPQ-------PTAQPGSGAGPQR 502
+P P P + G G P G D+ P P PG G
Sbjct: 1071 VGLPGPAGPAGSPGEDGDKGEIGEPGQKGSKGDKGENGPPGPPGLQGPVGAPGIAGGDGE 1130
Query: 503 PGPT------QKRGGRGVRVPEGSPARIAFSGRRG--GAKAQ-----PMAEAESLGDRER 549
PGP ++G G R G P I G G G K + PM G R
Sbjct: 1131 PGPRGQQGMFGQKGDEGARGFPGPPGPIGLQGLPGPPGEKGENGDVGPMGPPGPPGPRGP 1190
Query: 550 RDGGGAAG----GGAVAQLRAVGQGALCAAPRDSGPRVCATVESGGIPRDPGGQGHTLPE 605
+ GA G G+V + VG+ + GP A V GG + G +G P
Sbjct: 1191 QGPNGADGPQGPPGSVGSVGGVGEKGEPGEAGNPGPPGEAGV--GGPKGERGEKGEAGPP 1248
Query: 606 NTWG 609
G
Sbjct: 1249 GAAG 1252
Score = 41.2 bits (95), Expect = 0.003
Identities = 51/201 (25%), Positives = 69/201 (34%), Gaps = 32/201 (15%)
Query: 425 LGPLPRPGLRSARPPRQCRGEHRLGPHAPMPSPRCPGEAQGVTD----GRRASPSAPGGD 480
+GP+ PG R P+ G GP P P G GV + G +P PG
Sbjct: 1176 VGPMGPPGPPGPRGPQGPNGAD--GPQGP---PGSVGSVGGVGEKGEPGEAGNPGPPG-- 1228
Query: 481 QDRVSTTPQPTAQPGSGAGPQRPGPTQKRGGRGVRVPEGSPARIAFSGRRGGAKAQPMAE 540
+ V + G P GP +G G P+G+P + F G G A
Sbjct: 1229 EAGVGGPKGERGEKGEAGPPGAAGPPGAKGPPGDDGPKGNPGPVGFPGDPGPPGEPGPAG 1288
Query: 541 AESLGDRERRDG----------GGAAG-----------GGAVAQLRAVGQGALCAAPRDS 579
+ +G + DG G AG G A A+ R +GA A +
Sbjct: 1289 QDGVGGDKGEDGDPGQPGPPGPSGEAGPPGPPGKRGPPGAAGAEGRQGEKGAKGEAGAEG 1348
Query: 580 GPRVCATVESGGIPRDPGGQG 600
P V G PG +G
Sbjct: 1349 PPGKTGPVGPQGPAGKPGPEG 1369
Score = 38.9 bits (89), Expect = 0.014
Identities = 56/202 (27%), Positives = 72/202 (35%), Gaps = 13/202 (6%)
Query: 411 DREPAPETPARPLALGPLPRPGLRSARPPRQCRGEHRLGPHAPMPSPRCPGEAQGVTDGR 470
DR P P P P A G LP P P + G+ GP +AQ +
Sbjct: 431 DRGP-PGRPGLPGADG-LPGPPGTMLMLPFRYGGDGSKGPTISAQE----AQAQAILQQA 484
Query: 471 RASPSAPGGDQDRVSTTPQPTAQPGSGAGPQRPGPTQKRGGRGVRVPEGSPARIAFSGRR 530
R + P G ++ P P PGS G +G RGV+ P G + GR
Sbjct: 485 RIALRGPPGPMG-LTGRPGPVGGPGSSGAKGESGDPGPQGPRGVQGPPGPTGKPGKRGRP 543
Query: 531 G--GAKAQPMAEAESLGDRERRDGGGAAGGGAVAQLRAVGQGALCAAPRDSGPR-VCATV 587
G G + P E + GDR G G R G P D G R +
Sbjct: 544 GADGGRGMP-GEPGAKGDRGFDGLPGLPGDKGHRGER--GPQGPPGPPGDDGMRGEDGEI 600
Query: 588 ESGGIPRDPGGQGHTLPENTWG 609
G+P + G +G P T G
Sbjct: 601 GPRGLPGEAGPRGLLGPRGTPG 622
Score = 38.5 bits (88), Expect = 0.018
Identities = 105/453 (23%), Positives = 132/453 (29%), Gaps = 105/453 (23%)
Query: 138 QQGGHDEEADGLVRALLQDSGCEALLAGPGPI-QGGGNWELFPRKQCSQGRPGLPTRTMP 196
QQG ++ D R G L PGP + G N ++ P G PG P P
Sbjct: 1136 QQGMFGQKGDEGARGFPGPPGPIGLQGLPGPPGEKGENGDVGP-----MGPPGPPGPRGP 1190
Query: 197 RDTGQPTRTMLWDTGQPCVLPQGPAVTPPAFPGVQETLPSLPVAPGAPGQRGRPSPYSLR 256
+ PQGP + + GV E G PG+ G P P
Sbjct: 1191 QGPNGADG------------PQGPPGSVGSVGGVGEK--------GEPGEAGNPGP---- 1226
Query: 257 VRGPRQDLPHLDGLHGAHDHHG-LGHASAQAAQQPTRAVQPSLGIPHVVAEELEHSKPGG 315
P G+ G G G A A P A P ++ PG
Sbjct: 1227 --------PGEAGVGGPKGERGEKGEAGPPGAAGPPGAKGPP-------GDDGPKGNPGP 1271
Query: 316 GRRSRELRPRYRPRTPWLRTVCRTQSPGGGGGQD-PTALGAAALGTRPPRRRGLPLLTDA 374
+ P P V + G GQ P A PP +RG P
Sbjct: 1272 VGFPGDPGPPGEPGPAGQDGVGGDKGEDGDPGQPGPPGPSGEAGPPGPPGKRGPP----- 1326
Query: 375 PVPRRVRALVQLQLRLHVLGGEGDADLDATRQAACRDREPAPETPARPLALGPLPRPGLR 434
G EG + A + P P P GP +PG
Sbjct: 1327 ----------------GAAGAEGRQGEKGAKGEAGAEGPPGKTGPVGPQ--GPAGKPGPE 1368
Query: 435 SARPPRQCRGEHRL-------GPHAPMPSPRCPG-EAQGVTDGRRASPSAPG-------- 478
R GE L GP PM P PG + + G + P G
Sbjct: 1369 GLRGIPGPVGEQGLPGAAGQDGPPGPMGPPGLPGLKGDPGSKGEKGHPGLIGLIGPPGEQ 1428
Query: 479 ---GDQDRVSTTPQPTAQPGSG----AGPQRP-------GPTQKRGGRGVRVPEGSPARI 524
GD+ T P A+ G AGP P GP +G +G P G
Sbjct: 1429 GEKGDRGLPGTQGSPGAKGDGGIPGPAGPLGPPGPPGLPGPQGPKGNKGSTGPAGQKGDS 1488
Query: 525 AFSGRRG-----GAKAQPMAEAESLGDRERRDG 552
G G G QP+ S R +G
Sbjct: 1489 GLPGPPGSPGPPGEVIQPLPILSSKKTRRHTEG 1521
Score = 38.1 bits (87), Expect = 0.024
Identities = 63/226 (27%), Positives = 79/226 (34%), Gaps = 32/226 (14%)
Query: 393 LGGEGDADLDATRQAACRDREPAPETPARPLALGPLPRPGLRSARPPRQCRGEHRLGPHA 452
+G G+ + + A +P P A G L PGL P RQ GP
Sbjct: 765 IGPRGEDGPEGPKGRAGPTGDPGPSGQAGEK--GKLGVPGL-PGYPGRQ-------GPKG 814
Query: 453 PMPSPRCPGEAQGVTDGRRASPSAPGGDQDRVSTTPQ-------PTAQPG-----SGAGP 500
P PG A G G R PG R T P+ PT +PG G GP
Sbjct: 815 STGFPGFPG-ANG-EKGARGVAGKPGPRGQRGPTGPRGSRGARGPTGKPGPKGTSGGDGP 872
Query: 501 QRPGPTQKRGGRGVRVPEGSPARIAFSGRRG--GAKAQPMAEAES--LGDRERRDGGGAA 556
PGP +RG +G + P G P G G G P E+ G GG
Sbjct: 873 --PGPPGERGPQGPQGPVGFPGPKGPPGPPGKDGLPGHPGQRGETGFQGKTGPPGPGGVV 930
Query: 557 G-GGAVAQLRAVGQGALCAAPRDSGPR-VCATVESGGIPRDPGGQG 600
G G + +G+ P G + + G DPG QG
Sbjct: 931 GPQGPTGETGPIGERGHPGPPGPPGEQGLPGAAGKEGAKGDPGPQG 976
Score = 37.4 bits (85), Expect = 0.040
Identities = 113/465 (24%), Positives = 143/465 (30%), Gaps = 54/465 (11%)
Query: 188 PGLPTRTMPRDT---GQPTRTMLWDTGQPCVLPQGPAVTPPAFPGVQETLPSLPVAPGAP 244
PG+P T +T G G+P V+ G V P P + P G
Sbjct: 364 PGVPAETDITETSINGHGAYGEKGQKGEPAVVEPGMLVEGPPGPAGPAGIMGPPGLQGPT 423
Query: 245 GQRGRPSPYSLRVRGP--RQDLPHLDGLHGAHD--------HHGLGHA----SAQAAQQP 290
G G P RGP R LP DGL G + G G SAQ AQ
Sbjct: 424 GPPGDPGD-----RGPPGRPGLPGADGLPGPPGTMLMLPFRYGGDGSKGPTISAQEAQAQ 478
Query: 291 TRAVQPSL---GIPHVVAEELEHSKPGGGRRSRELRPRYRPRTPWLRTVCRTQSPGGGGG 347
Q + G P + GG S P R V P G G
Sbjct: 479 AILQQARIALRGPPGPMGLTGRPGPVGGPGSSGAKGESGDPGPQGPRGVQGPPGPTGKPG 538
Query: 348 QD--PTALGAAALGTRPPRR--RGLPLLTDAPVPRRVRALVQLQLRLHVLGGEGDADLDA 403
+ P A G + P + RG L P + R Q G +G D
Sbjct: 539 KRGRPGADGGRGMPGEPGAKGDRGFDGLPGLPGDKGHRGERGPQGPPGPPGDDGMRGEDG 598
Query: 404 TRQAACRDREPAPETPARPLALGPLP-RPGLRSARPPRQCRGEHRLGPHAPMPSPRCPGE 462
E P P P +PG+ P +G +GP P P PG+
Sbjct: 599 EIGPRGLPGEAGPRGLLGPRGTPGAPGQPGMAGVDGPPGPKGN--MGPQGE-PGP--PGQ 653
Query: 463 AQGVTDGRRASPSAPGGDQDRVSTTPQP--TAQPGSGAGPQRPGPTQKRGGRGVRVPEGS 520
P P G +P PG+ P PG + G +G P G
Sbjct: 654 QGNPGPQGLPGPQGPIGPPGEKGPQGKPGLAGLPGADGPPGHPGKEGQSGEKGALGPPGP 713
Query: 521 PARIAFSGRRG--------GAKAQPMAEAESLGDRERRDGGGAAGGGAVAQLRAVGQG-- 570
I + G RG G K + E + D G G V Q+ G+
Sbjct: 714 QGPIGYPGPRGVKGADGVRGLKGSKGEKGEDGFPGFKGDMGLKGDRGEVGQIGPRGEDGP 773
Query: 571 ----ALCAAPRDSGPRVCATVESG--GIPRDPGGQGHTLPENTWG 609
D GP A E G G+P PG G P+ + G
Sbjct: 774 EGPKGRAGPTGDPGPSGQAG-EKGKLGVPGLPGYPGRQGPKGSTG 817
Score = 30.0 bits (66), Expect = 6.5
Identities = 40/155 (25%), Positives = 64/155 (41%), Gaps = 23/155 (14%)
Query: 179 PRKQCSQGRPGLP-TRTMPR---DTGQPTRT-MLWDTGQPCVL-PQGP----AVTPPAFP 228
P +Q +G GLP T+ P D G P L G P + PQGP T PA
Sbjct: 1425 PGEQGEKGDRGLPGTQGSPGAKGDGGIPGPAGPLGPPGPPGLPGPQGPKGNKGSTGPAGQ 1484
Query: 229 GVQETLPSLPVAPGAPGQRGRPSPYSLRVRGPRQDLPHLDGLHGAHDHHGLGHASAQAAQ 288
LP P +PG PG+ +P P + ++ H +G+ D + L ++
Sbjct: 1485 KGDSGLPGPPGSPGPPGEVIQPLP----ILSSKKTRRHTEGMQADADDNILDYSD----- 1535
Query: 289 QPTRAVQPSLGIPHVVAEELEHSKPGGGRRSRELR 323
++ G + + +++EH K G ++ R
Sbjct: 1536 ----GMEEIFGSLNSLKQDIEHMKFPMGTQTNPAR 1566
>gi|98985806 alpha 1 type XI collagen isoform A preproprotein [Homo
sapiens]
Length = 1806
Score = 52.0 bits (123), Expect = 2e-06
Identities = 121/484 (25%), Positives = 153/484 (31%), Gaps = 83/484 (17%)
Query: 167 GPIQGGGNWELFPRKQCSQGRPGLPTRTMPRDTGQPT-----RTMLWDTGQPCVLPQGPA 221
GP +G + FP +G G+ + PR PT R TG+P
Sbjct: 850 GP-KGSTGFPGFPGANGEKGARGVAGKPGPRGQRGPTGPRGSRGARGPTGKPGPKGTSGG 908
Query: 222 VTPPAFPGVQETLPSLPVAP-GAPGQRGRPSPYSLRVRGPRQD-LPHLDGLHGAHDHHGL 279
PP PG E P P P G PG +G P P P +D LP G G G
Sbjct: 909 DGPPGPPG--ERGPQGPQGPVGFPGPKGPPGP-------PGKDGLPGHPGQRGETGFQGK 959
Query: 280 ----GHASAQAAQQPTRAVQP--SLGIPHVVAEELEHSKPGG-GRRSRELRPRYRPRTPW 332
G Q PT P G P E PG G+ + P
Sbjct: 960 TGPPGPGGVVGPQGPTGETGPIGERGHPGPPGPPGEQGLPGAAGKEGAKGDP-------- 1011
Query: 333 LRTVCRTQSPGGGGGQDPTALGAAALGTRP-PRRRGLPLLTDAPVPRRVRALVQLQLRLH 391
P G G+D A G R P RGLP AP ++ Q
Sbjct: 1012 --------GPQGISGKDGPA------GLRGFPGERGLPGAQGAP---GLKGGEGPQGPPG 1054
Query: 392 VLGGEGDADLDATRQAACRDREPAPETPARPLALGPLPRPGLRSARPPRQCRGEHRLGPH 451
+G G+ T P P+ P GP G + P+ G +
Sbjct: 1055 PVGSPGERGSAGTAGPIGLPGRPGPQGPP-----GPAGEKGAPGEKGPQGPAGRDGVQGP 1109
Query: 452 APMPSPRCPGEAQGVTD--GRRASPSAPGGDQDRVSTTPQ-------PTAQPGSGAGPQR 502
+P P P + G G P G D+ P P PG G
Sbjct: 1110 VGLPGPAGPAGSPGEDGDKGEIGEPGQKGSKGDKGENGPPGPPGLQGPVGAPGIAGGDGE 1169
Query: 503 PGPT------QKRGGRGVRVPEGSPARIAFSGRRG--GAKAQ-----PMAEAESLGDRER 549
PGP ++G G R G P I G G G K + PM G R
Sbjct: 1170 PGPRGQQGMFGQKGDEGARGFPGPPGPIGLQGLPGPPGEKGENGDVGPMGPPGPPGPRGP 1229
Query: 550 RDGGGAAG----GGAVAQLRAVGQGALCAAPRDSGPRVCATVESGGIPRDPGGQGHTLPE 605
+ GA G G+V + VG+ + GP A V GG + G +G P
Sbjct: 1230 QGPNGADGPQGPPGSVGSVGGVGEKGEPGEAGNPGPPGEAGV--GGPKGERGEKGEAGPP 1287
Query: 606 NTWG 609
G
Sbjct: 1288 GAAG 1291
Score = 41.2 bits (95), Expect = 0.003
Identities = 51/201 (25%), Positives = 69/201 (34%), Gaps = 32/201 (15%)
Query: 425 LGPLPRPGLRSARPPRQCRGEHRLGPHAPMPSPRCPGEAQGVTD----GRRASPSAPGGD 480
+GP+ PG R P+ G GP P P G GV + G +P PG
Sbjct: 1215 VGPMGPPGPPGPRGPQGPNGAD--GPQGP---PGSVGSVGGVGEKGEPGEAGNPGPPG-- 1267
Query: 481 QDRVSTTPQPTAQPGSGAGPQRPGPTQKRGGRGVRVPEGSPARIAFSGRRGGAKAQPMAE 540
+ V + G P GP +G G P+G+P + F G G A
Sbjct: 1268 EAGVGGPKGERGEKGEAGPPGAAGPPGAKGPPGDDGPKGNPGPVGFPGDPGPPGEPGPAG 1327
Query: 541 AESLGDRERRDG----------GGAAG-----------GGAVAQLRAVGQGALCAAPRDS 579
+ +G + DG G AG G A A+ R +GA A +
Sbjct: 1328 QDGVGGDKGEDGDPGQPGPPGPSGEAGPPGPPGKRGPPGAAGAEGRQGEKGAKGEAGAEG 1387
Query: 580 GPRVCATVESGGIPRDPGGQG 600
P V G PG +G
Sbjct: 1388 PPGKTGPVGPQGPAGKPGPEG 1408
Score = 38.9 bits (89), Expect = 0.014
Identities = 56/202 (27%), Positives = 72/202 (35%), Gaps = 13/202 (6%)
Query: 411 DREPAPETPARPLALGPLPRPGLRSARPPRQCRGEHRLGPHAPMPSPRCPGEAQGVTDGR 470
DR P P P P A G LP P P + G+ GP +AQ +
Sbjct: 470 DRGP-PGRPGLPGADG-LPGPPGTMLMLPFRYGGDGSKGPTISAQE----AQAQAILQQA 523
Query: 471 RASPSAPGGDQDRVSTTPQPTAQPGSGAGPQRPGPTQKRGGRGVRVPEGSPARIAFSGRR 530
R + P G ++ P P PGS G +G RGV+ P G + GR
Sbjct: 524 RIALRGPPGPMG-LTGRPGPVGGPGSSGAKGESGDPGPQGPRGVQGPPGPTGKPGKRGRP 582
Query: 531 G--GAKAQPMAEAESLGDRERRDGGGAAGGGAVAQLRAVGQGALCAAPRDSGPR-VCATV 587
G G + P E + GDR G G R G P D G R +
Sbjct: 583 GADGGRGMP-GEPGAKGDRGFDGLPGLPGDKGHRGER--GPQGPPGPPGDDGMRGEDGEI 639
Query: 588 ESGGIPRDPGGQGHTLPENTWG 609
G+P + G +G P T G
Sbjct: 640 GPRGLPGEAGPRGLLGPRGTPG 661
Score = 38.5 bits (88), Expect = 0.018
Identities = 105/453 (23%), Positives = 132/453 (29%), Gaps = 105/453 (23%)
Query: 138 QQGGHDEEADGLVRALLQDSGCEALLAGPGPI-QGGGNWELFPRKQCSQGRPGLPTRTMP 196
QQG ++ D R G L PGP + G N ++ P G PG P P
Sbjct: 1175 QQGMFGQKGDEGARGFPGPPGPIGLQGLPGPPGEKGENGDVGP-----MGPPGPPGPRGP 1229
Query: 197 RDTGQPTRTMLWDTGQPCVLPQGPAVTPPAFPGVQETLPSLPVAPGAPGQRGRPSPYSLR 256
+ PQGP + + GV E G PG+ G P P
Sbjct: 1230 QGPNGADG------------PQGPPGSVGSVGGVGEK--------GEPGEAGNPGP---- 1265
Query: 257 VRGPRQDLPHLDGLHGAHDHHG-LGHASAQAAQQPTRAVQPSLGIPHVVAEELEHSKPGG 315
P G+ G G G A A P A P ++ PG
Sbjct: 1266 --------PGEAGVGGPKGERGEKGEAGPPGAAGPPGAKGPP-------GDDGPKGNPGP 1310
Query: 316 GRRSRELRPRYRPRTPWLRTVCRTQSPGGGGGQD-PTALGAAALGTRPPRRRGLPLLTDA 374
+ P P V + G GQ P A PP +RG P
Sbjct: 1311 VGFPGDPGPPGEPGPAGQDGVGGDKGEDGDPGQPGPPGPSGEAGPPGPPGKRGPP----- 1365
Query: 375 PVPRRVRALVQLQLRLHVLGGEGDADLDATRQAACRDREPAPETPARPLALGPLPRPGLR 434
G EG + A + P P P GP +PG
Sbjct: 1366 ----------------GAAGAEGRQGEKGAKGEAGAEGPPGKTGPVGPQ--GPAGKPGPE 1407
Query: 435 SARPPRQCRGEHRL-------GPHAPMPSPRCPG-EAQGVTDGRRASPSAPG-------- 478
R GE L GP PM P PG + + G + P G
Sbjct: 1408 GLRGIPGPVGEQGLPGAAGQDGPPGPMGPPGLPGLKGDPGSKGEKGHPGLIGLIGPPGEQ 1467
Query: 479 ---GDQDRVSTTPQPTAQPGSG----AGPQRP-------GPTQKRGGRGVRVPEGSPARI 524
GD+ T P A+ G AGP P GP +G +G P G
Sbjct: 1468 GEKGDRGLPGTQGSPGAKGDGGIPGPAGPLGPPGPPGLPGPQGPKGNKGSTGPAGQKGDS 1527
Query: 525 AFSGRRG-----GAKAQPMAEAESLGDRERRDG 552
G G G QP+ S R +G
Sbjct: 1528 GLPGPPGSPGPPGEVIQPLPILSSKKTRRHTEG 1560
Score = 38.1 bits (87), Expect = 0.024
Identities = 63/226 (27%), Positives = 79/226 (34%), Gaps = 32/226 (14%)
Query: 393 LGGEGDADLDATRQAACRDREPAPETPARPLALGPLPRPGLRSARPPRQCRGEHRLGPHA 452
+G G+ + + A +P P A G L PGL P RQ GP
Sbjct: 804 IGPRGEDGPEGPKGRAGPTGDPGPSGQAGEK--GKLGVPGL-PGYPGRQ-------GPKG 853
Query: 453 PMPSPRCPGEAQGVTDGRRASPSAPGGDQDRVSTTPQ-------PTAQPG-----SGAGP 500
P PG A G G R PG R T P+ PT +PG G GP
Sbjct: 854 STGFPGFPG-ANG-EKGARGVAGKPGPRGQRGPTGPRGSRGARGPTGKPGPKGTSGGDGP 911
Query: 501 QRPGPTQKRGGRGVRVPEGSPARIAFSGRRG--GAKAQPMAEAES--LGDRERRDGGGAA 556
PGP +RG +G + P G P G G G P E+ G GG
Sbjct: 912 --PGPPGERGPQGPQGPVGFPGPKGPPGPPGKDGLPGHPGQRGETGFQGKTGPPGPGGVV 969
Query: 557 G-GGAVAQLRAVGQGALCAAPRDSGPR-VCATVESGGIPRDPGGQG 600
G G + +G+ P G + + G DPG QG
Sbjct: 970 GPQGPTGETGPIGERGHPGPPGPPGEQGLPGAAGKEGAKGDPGPQG 1015
Score = 37.4 bits (85), Expect = 0.040
Identities = 113/465 (24%), Positives = 143/465 (30%), Gaps = 54/465 (11%)
Query: 188 PGLPTRTMPRDT---GQPTRTMLWDTGQPCVLPQGPAVTPPAFPGVQETLPSLPVAPGAP 244
PG+P T +T G G+P V+ G V P P + P G
Sbjct: 403 PGVPAETDITETSINGHGAYGEKGQKGEPAVVEPGMLVEGPPGPAGPAGIMGPPGLQGPT 462
Query: 245 GQRGRPSPYSLRVRGP--RQDLPHLDGLHGAHD--------HHGLGHA----SAQAAQQP 290
G G P RGP R LP DGL G + G G SAQ AQ
Sbjct: 463 GPPGDPGD-----RGPPGRPGLPGADGLPGPPGTMLMLPFRYGGDGSKGPTISAQEAQAQ 517
Query: 291 TRAVQPSL---GIPHVVAEELEHSKPGGGRRSRELRPRYRPRTPWLRTVCRTQSPGGGGG 347
Q + G P + GG S P R V P G G
Sbjct: 518 AILQQARIALRGPPGPMGLTGRPGPVGGPGSSGAKGESGDPGPQGPRGVQGPPGPTGKPG 577
Query: 348 QD--PTALGAAALGTRPPRR--RGLPLLTDAPVPRRVRALVQLQLRLHVLGGEGDADLDA 403
+ P A G + P + RG L P + R Q G +G D
Sbjct: 578 KRGRPGADGGRGMPGEPGAKGDRGFDGLPGLPGDKGHRGERGPQGPPGPPGDDGMRGEDG 637
Query: 404 TRQAACRDREPAPETPARPLALGPLP-RPGLRSARPPRQCRGEHRLGPHAPMPSPRCPGE 462
E P P P +PG+ P +G +GP P P PG+
Sbjct: 638 EIGPRGLPGEAGPRGLLGPRGTPGAPGQPGMAGVDGPPGPKGN--MGPQGE-PGP--PGQ 692
Query: 463 AQGVTDGRRASPSAPGGDQDRVSTTPQP--TAQPGSGAGPQRPGPTQKRGGRGVRVPEGS 520
P P G +P PG+ P PG + G +G P G
Sbjct: 693 QGNPGPQGLPGPQGPIGPPGEKGPQGKPGLAGLPGADGPPGHPGKEGQSGEKGALGPPGP 752
Query: 521 PARIAFSGRRG--------GAKAQPMAEAESLGDRERRDGGGAAGGGAVAQLRAVGQG-- 570
I + G RG G K + E + D G G V Q+ G+
Sbjct: 753 QGPIGYPGPRGVKGADGVRGLKGSKGEKGEDGFPGFKGDMGLKGDRGEVGQIGPRGEDGP 812
Query: 571 ----ALCAAPRDSGPRVCATVESG--GIPRDPGGQGHTLPENTWG 609
D GP A E G G+P PG G P+ + G
Sbjct: 813 EGPKGRAGPTGDPGPSGQAG-EKGKLGVPGLPGYPGRQGPKGSTG 856
Score = 30.0 bits (66), Expect = 6.5
Identities = 40/155 (25%), Positives = 64/155 (41%), Gaps = 23/155 (14%)
Query: 179 PRKQCSQGRPGLP-TRTMPR---DTGQPTRT-MLWDTGQPCVL-PQGP----AVTPPAFP 228
P +Q +G GLP T+ P D G P L G P + PQGP T PA
Sbjct: 1464 PGEQGEKGDRGLPGTQGSPGAKGDGGIPGPAGPLGPPGPPGLPGPQGPKGNKGSTGPAGQ 1523
Query: 229 GVQETLPSLPVAPGAPGQRGRPSPYSLRVRGPRQDLPHLDGLHGAHDHHGLGHASAQAAQ 288
LP P +PG PG+ +P P + ++ H +G+ D + L ++
Sbjct: 1524 KGDSGLPGPPGSPGPPGEVIQPLP----ILSSKKTRRHTEGMQADADDNILDYSD----- 1574
Query: 289 QPTRAVQPSLGIPHVVAEELEHSKPGGGRRSRELR 323
++ G + + +++EH K G ++ R
Sbjct: 1575 ----GMEEIFGSLNSLKQDIEHMKFPMGTQTNPAR 1605
>gi|209571537 proline-rich protein BstNI subfamily 2 [Homo sapiens]
Length = 416
Score = 52.0 bits (123), Expect = 2e-06
Identities = 80/358 (22%), Positives = 114/358 (31%), Gaps = 32/358 (8%)
Query: 217 PQGPAVTPPAFPGVQETLPSLPVAPGAPGQRGRPSPYSLRVRGPRQ--DLPHLDGLHGAH 274
PQGP P G + P P PG+ P P + R PR P G +
Sbjct: 68 PQGPPPPPGKPQGPPPQGGNKPQGPPPPGKPQGPPPQGDKSRSPRSPPGKPQGPPPQGGN 127
Query: 275 DHHGLGHASAQAAQQPTRAVQPSLGIPHVVAEELEHSKPGGGRRSRELR-PRYRPRTPWL 333
G + P + G P + + P G +SR R P +P+ P
Sbjct: 128 QPQGPPPPPGKPQGPPPQGGNKPQGPP--PPGKPQGPPPQGDNKSRSSRSPPGKPQGPPP 185
Query: 334 RTVCRTQSPGGGGGQDPTALGAAALGTRPPRRRGLPLLTDAPVPRRVRALVQLQLRLHVL 393
+ + Q P G+ G G P+ P P P
Sbjct: 186 QGGNQPQGPPPPPGKPQ---GPPPQGGNKPQGPPPPGKPQGPPP---------------- 226
Query: 394 GGEGDADLDATRQAACRDREPAPETPARPLALGPLPRPGLRSARPPRQCRGEHRLGPHAP 453
+GD + R + + P P+ +P GP P PG PP+ G GP P
Sbjct: 227 --QGDNKSQSARSPPGKPQGPPPQGGNQP--QGPPPPPGKPQGPPPQ--GGNKPQGPPPP 280
Query: 454 MPSPRCPGEAQGVTDGRRASPSAPGGDQDRVSTTPQ-PTAQPGSGAGPQRPGPTQKRGGR 512
P + + R+ P P G + PQ P PG GP G + +G
Sbjct: 281 GKPQGPPPQGGSKSRSSRSPPGKPQGPPPQGGNQPQGPPPPPGKPQGPPPQGGNKPQGPP 340
Query: 513 GVRVPEGSPARIAFSGRRG-GAKAQPMAEAESLGDRERRDGGGAAGGGAVAQLRAVGQ 569
P+G P + R +P + G+ + A G Q GQ
Sbjct: 341 PPGKPQGPPPQGGSKSRSARSPPGKPQGPPQQEGNNPQGPPPPAGGNPQQPQAPPAGQ 398
Score = 42.0 bits (97), Expect = 0.002
Identities = 89/376 (23%), Positives = 125/376 (33%), Gaps = 63/376 (16%)
Query: 167 GPIQGGGNWELFPRKQCSQGRPGLPTRTMPRDTGQPTRTMLWDTGQPCVLPQGPAVTPPA 226
GP GGN K PG P P+ G +R+ G+P QGP PP
Sbjct: 80 GPPPQGGN------KPQGPPPPGKPQGPPPQ--GDKSRSPRSPPGKP----QGP---PPQ 124
Query: 227 FPGVQETLPSLPVAPGAPGQRGRPSPYSLRVRGPRQDLPHLDGLHGAHDHHGLGHASA-- 284
+ P P P P +G P G Q P G
Sbjct: 125 GGNQPQGPPPPPGKPQGPPPQGGNKPQGPPPPGKPQGPPPQGDNKSRSSRSPPGKPQGPP 184
Query: 285 -QAAQQPTRAVQPSLGIPHVVAEELEHSKPGGGRRSRELRPRYRPRTPWLRTVCRTQS-- 341
Q QP + P G P + P GG + + P +P+ P + ++QS
Sbjct: 185 PQGGNQP-QGPPPPPGKP-------QGPPPQGGNKPQGPPPPGKPQGPPPQGDNKSQSAR 236
Query: 342 --PGGGGGQDPTALGAAALGTRPP--RRRGLPLL-----TDAPVPRRVRALVQLQLRLHV 392
PG G P G G PP + +G P P P + +
Sbjct: 237 SPPGKPQGPPPQG-GNQPQGPPPPPGKPQGPPPQGGNKPQGPPPPGKPQGPPP------- 288
Query: 393 LGGEGDADLDATRQAACRDREPAPETPARPLALGPLPRPGLRSARPPRQCRGEHRLGPHA 452
+G + ++R + + P P+ +P GP P PG PP+ G GP
Sbjct: 289 ---QGGSKSRSSRSPPGKPQGPPPQGGNQPQ--GPPPPPGKPQGPPPQG--GNKPQGPPP 341
Query: 453 PMPSPRCPGEAQGVTDGRRASPSAPGGDQDRVSTTPQPTAQPGSGAGPQRP--------- 503
P P + + R+ P P G + PQ P +G PQ+P
Sbjct: 342 PGKPQGPPPQGGSKSRSARSPPGKPQGPPQQEGNNPQGPPPP-AGGNPQQPQAPPAGQPQ 400
Query: 504 -GPTQKRGGRGVRVPE 518
P +GGR R P+
Sbjct: 401 GPPRPPQGGRPSRPPQ 416
Score = 32.3 bits (72), Expect = 1.3
Identities = 28/105 (26%), Positives = 39/105 (37%), Gaps = 12/105 (11%)
Query: 438 PPRQCRGEHRLGPHAPMPSPRCPGEAQG--VTDGRRAS----PSAPGGDQDRVSTTPQPT 491
PP + +G G + P P PG+ QG G + P P G + + P
Sbjct: 53 PPGKPQGPPPQGGNQPQGPPPPPGKPQGPPPQGGNKPQGPPPPGKPQGPPPQGDKSRSPR 112
Query: 492 AQPGSGAGPQRPGPTQKRGGRGVRVPEGSPARIAFSGRRGGAKAQ 536
+ PG GP G Q +G P P + +GG K Q
Sbjct: 113 SPPGKPQGPPPQGGNQPQG------PPPPPGKPQGPPPQGGNKPQ 151
>gi|120587025 SH3 and multiple ankyrin repeat domains 1 [Homo sapiens]
Length = 2161
Score = 52.0 bits (123), Expect = 2e-06
Identities = 101/413 (24%), Positives = 131/413 (31%), Gaps = 56/413 (13%)
Query: 217 PQGPAVTPPAFPGVQETLPSLPVAPGAPGQRGR-----------PSPYSLRVRGPRQDLP 265
P+ P TPP PS P PG G PSP RV + L
Sbjct: 929 PEPPYSTPPVPSSSGRLTPSPRGGPFNPGSGGPLPASSPASFDGPSPPDTRVGSREKSLY 988
Query: 266 HLDGLHGAH---DHHGLGHASA-----QAAQQPTRAVQPSLGIPHVVAEELEHSKPGGGR 317
H L AH HH HA A P + G P L R
Sbjct: 989 HSGPLPPAHHHPPHHHHHHAPPPQPHHHHAHPPHPPEMETGGSPDDPPPRLALGPQPSLR 1048
Query: 318 RSRELRPRYRPRTPWLRTVCRTQSPGGGGG--QDPTALGAAALGTRPPRRRGLPLLTDAP 375
R P P P + S GGGGG Q P A PPR + A
Sbjct: 1049 GWRGGGPSPTPGAP---SPSHHGSAGGGGGSSQGP----ALRYFQLPPRAASAAMYVPAR 1101
Query: 376 VPRRVRALVQLQLRLHVLGGEGDADLDATRQAACRDREPAPETPARPLALGPLPRPGLRS 435
R + + Q ++ +G A + +P P A P +P P +
Sbjct: 1102 SGRGRKGPLVKQTKVEGEPQKGGGLPPAPSPTSPASPQPPPAV-AAPSEKNSIPIPTIII 1160
Query: 436 ARPPRQCRGEHRLGPHAPMPSPRCPGEAQGVTDGRRASPSAPGGDQDRVSTTPQPTAQPG 495
P G G P P E G G +SPS P V +P P P
Sbjct: 1161 KAPSTSSSGRSSQGSSTEAEPPTQP-EPTGGGGGGGSSPS-PAPAMSPVPPSPSPVPTPA 1218
Query: 496 SGAGPQRPGPTQKRGGRGVRVPEGSPARIAFSGRRGG-----AKAQPMAEAESLGDRERR 550
S +GP T + G A + + R GG + + + GD +
Sbjct: 1219 SPSGPATLDFTSQFGA----------ALVGAARREGGWQNEARRRSTLFLSTDAGDEDGG 1268
Query: 551 DGG---GAAGGGAVAQLRAVGQGALCAAPRDSGPRVCATVESGGIPRDPGGQG 600
DGG GAA G + +++ +G A P +ES G GG G
Sbjct: 1269 DGGLGTGAAPGPRLRHSKSIDEGMFSAEP-------YLRLESAGSGAGYGGYG 1314
Score = 35.8 bits (81), Expect = 0.12
Identities = 35/148 (23%), Positives = 49/148 (33%), Gaps = 28/148 (18%)
Query: 414 PAPETPARPLALGPLPRPGLRSARPPRQCRGEHRLGPHAPMPSPRCPGEAQGVTDGRRAS 473
P P+TPA L P+P P + +A P E +T G A+
Sbjct: 1591 PLPDTPAPATPLPPVPPPAVAAAPPTLDSTASSLTS---------YDSEVATLTQGASAA 1641
Query: 474 PSAPGGDQDRVSTTPQPTAQPGSGAGPQRPGPTQKRGGRGVRVPEGSPARIAFSGRRGGA 533
P P P P A +PGP P G+ + I R +
Sbjct: 1642 PGDP--------HPPGPPAPAAPAPAAPQPGPDP---------PPGTDSGIEEVDSRSSS 1684
Query: 534 --KAQPMAEAESLGDRERRDGGGAAGGG 559
+ ++ A +L GG A GGG
Sbjct: 1685 DHPLETISSASTLSSLSAEGGGSAGGGG 1712
Score = 33.9 bits (76), Expect = 0.45
Identities = 31/89 (34%), Positives = 33/89 (37%), Gaps = 9/89 (10%)
Query: 475 SAPGGDQDRVSTTPQPTAQPGSGAGPQRPGPTQKRGG---RGVRVPEGSPARIAFSGRRG 531
SAPG S P PT+ GS Q PT K R P G+ AR GR
Sbjct: 452 SAPGAAS---SGAPGPTS--GSQGQSQPSAPTTKLSSGTLRSASSPRGARARSPSRGRHP 506
Query: 532 -GAKAQPMAEAESLGDRERRDGGGAAGGG 559
AK QP S G GG G G
Sbjct: 507 EDAKRQPRGRPSSSGTPREGPAGGTGGSG 535
Score = 32.0 bits (71), Expect = 1.7
Identities = 43/170 (25%), Positives = 58/170 (34%), Gaps = 24/170 (14%)
Query: 334 RTVCRTQSPGGGGGQDPTALGAAALGTRPPRRRGLPLLTDAPVPRRVRALVQLQLRLHVL 393
+T+ ++SPG GG A+LG P+ T++ RA + +
Sbjct: 831 QTISASESPGPGG--------LASLGKHRPKGF---FATESSFDPHHRAQPSYERPSFLP 879
Query: 394 GGEGDADLDATRQAACRDREPAPETPARPLALGPLPRPGLRSARPPRQCRGEHRLGPHAP 453
G G L A D P PA + L PG PP P P
Sbjct: 880 PGPG-LMLRQKSIGAAEDDRPYLAPPAMKFSRS-LSVPGSEDIPPPPTTSP-----PEPP 932
Query: 454 MPSPRCPGEAQGVTDGRRASPSAPGGDQDRVSTTPQPTAQPGSGAGPQRP 503
+P P + +T R P PG S P P + P S GP P
Sbjct: 933 YSTPPVPSSSGRLTPSPRGGPFNPG------SGGPLPASSPASFDGPSPP 976
Score = 30.4 bits (67), Expect = 4.9
Identities = 24/72 (33%), Positives = 30/72 (41%), Gaps = 8/72 (11%)
Query: 470 RRASPSAPGGDQDRVSTTPQPTAQPGSGAGPQRPG-------PTQKRGGRG-VRVPEGSP 521
R SPS + +VS P+P++ P +GP PG PT GG P P
Sbjct: 1997 RAPSPSLLPASEHKVSPAPRPSSLPILPSGPLYPGLFDIRGSPTGGAGGSADPFAPVFVP 2056
Query: 522 ARIAFSGRRGGA 533
SG GGA
Sbjct: 2057 PHPGISGGLGGA 2068
>gi|4502955 type IV collagen alpha 5 isoform 1 precursor [Homo
sapiens]
Length = 1685
Score = 51.6 bits (122), Expect = 2e-06
Identities = 116/441 (26%), Positives = 142/441 (32%), Gaps = 108/441 (24%)
Query: 186 GRPGLPTRTMPRDTGQPTRTMLWDTGQPCVLPQGPAVTP--PAFPGVQET-----LPSLP 238
G PGLP + D G P + + G P P+G P P PG++ + LP LP
Sbjct: 1054 GSPGLPGQK--GDKGDPGISSIGLPGLPG--PKGEPGLPGYPGNPGIKGSVGDPGLPGLP 1109
Query: 239 VAPGAPGQRGRPS-PYSLRVRGPR--QDLPHLDGLHGAHDHHGLGHASAQAAQQPTRAVQ 295
PGA GQ G P P + GP+ P GL G G G Q +
Sbjct: 1110 GTPGAKGQPGLPGFPGTPGPPGPKGISGPPGNPGLPGEPGPVGGGGHPGQPGPPGEKGKP 1169
Query: 296 PSLGIPHVVAEELEHSKPGGGRRSRELRPRYRPRTPWLRTVCRTQSPGG--GGGQDPTAL 353
GIP ++ E +PG G P P L + + GG G +P
Sbjct: 1170 GQDGIPGPAGQKGEPGQPGFG----------NPGPPGLPGLSGQKGDGGLPGIPGNPGLP 1219
Query: 354 GAAALGTRPPRRRGLPLLTDAPVPRRVRALVQLQLRLHVLGGEGDADLDATRQAACRDRE 413
G P G P + P P G G
Sbjct: 1220 GPKG----EPGFHGFPGVQGPPGPP---------------GSPG---------------- 1244
Query: 414 PAPETP-ARPLALGPLPRPGLRSARPPRQCRGEHRLGPHAPMPSPRCPGEAQGVTDGRRA 472
PA E P P GP RPGL GP P P PG G G +
Sbjct: 1245 PALEGPKGNPGPQGPPGRPGLP--------------GPEGP---PGLPG--NGGIKGEKG 1285
Query: 473 SPSAPG--------GDQDRVSTTPQPTAQPGSGAGPQRPGPTQKRGGRGVRVPEGSPARI 524
+P PG GDQ PG P RPG +G G+ G P
Sbjct: 1286 NPGQPGLPGLPGLKGDQ----------GPPGLQGNPGRPGLNGMKGDPGLPGVPGFPGMK 1335
Query: 525 AFSGRRGGAKAQPMAEAESLGDRERRDGGGAAGGGAVAQLRA-----VGQGALCAAPRDS 579
SG G A P E +G G +G + + A GQ L P
Sbjct: 1336 GPSGVPG--SAGPEGEPGLIGPPGPPGLPGPSGQSIIIKGDAGPPGIPGQPGLKGLPGPQ 1393
Query: 580 GPRVCATVESGGIPRDPGGQG 600
GP+ G P DPG G
Sbjct: 1394 GPQ--GLPGPTGPPGDPGRNG 1412
Score = 50.1 bits (118), Expect = 6e-06
Identities = 115/459 (25%), Positives = 146/459 (31%), Gaps = 77/459 (16%)
Query: 166 PGPIQGGGNWELFPRKQCSQGRPGLPTRTMPRDTGQPTRTMLWDTGQPCVLPQGPA-VTP 224
PGPI G P ++ G PGL P + G P +P P + P
Sbjct: 830 PGPI-GQPGLHGIPGEKGDPGPPGLDVPGPPGERGSPG------------IPGAPGPIGP 876
Query: 225 PAFPGVQETLPSLPVAPGAPGQRGRPS-------PYSLRVRGPRQDLPHLDGLHGAHDHH 277
P PG LP A G PG +G P L + G R +P L G G
Sbjct: 877 PGSPG----LPGKAGASGFPGTKGEMGMMGPPGPPGPLGIPG-RSGVPGLKGDDGLQGQP 931
Query: 278 GLGHASAQAAQ--QPTRAVQPSLGIPHVVAEELEHSKPGGGRRSRELRPRYRPRTPWLRT 335
GL + + +P P P+++ + E +PG P P +
Sbjct: 932 GLPGPTGEKGSKGEPGLPGPPGPMDPNLLGSKGEKGEPG------------LPGIPGVSG 979
Query: 336 VCRTQSPGGGGGQDPTALGAAALGTRPPRRRGLPLLTDAPVPRRVRALVQLQLRLHVLGG 395
Q G GQ P G L PP +G P L P L+ +G
Sbjct: 980 PKGYQGLPGDPGQ-PGLSGQPGL-PGPPGPKGNPGLPGQP------GLIGPPGLKGTIGD 1031
Query: 396 EGDADLDATRQAACRDREPA-PETPARPLALGPLPRPGLRSARPPRQCRGEHRLGPHAPM 454
G P P +P P G PG+ S P G P
Sbjct: 1032 MGFPGPQGVEGPPGPSGVPGQPGSPGLPGQKGDKGDPGISSIGLP---------GLPGPK 1082
Query: 455 PSPRCPG-EAQGVTDGRRASPSAPGGDQDRVSTTPQPTAQPGSGAGPQRPGPTQKRGGRG 513
P PG G P PG + TP QPG P PGP G +G
Sbjct: 1083 GEPGLPGYPGNPGIKGSVGDPGLPG-----LPGTPGAKGQPGLPGFPGTPGPP---GPKG 1134
Query: 514 VRVPEGSPARIAFSGRRGGA--KAQPMAEAESLGDRERRDG-GGAAGGGAVAQLRAVGQG 570
+ P G+P G GG QP E + +DG G AG G
Sbjct: 1135 ISGPPGNPGLPGEPGPVGGGGHPGQPGPPGEK--GKPGQDGIPGPAGQKGEPGQPGFGNP 1192
Query: 571 ALCAAPRDSGPRVCATVESGGIPRDPGGQGHTLPENTWG 609
P SG + GG+P PG G P+ G
Sbjct: 1193 GPPGLPGLSGQK-----GDGGLPGIPGNPGLPGPKGEPG 1226
Score = 49.3 bits (116), Expect = 1e-05
Identities = 116/458 (25%), Positives = 144/458 (31%), Gaps = 92/458 (20%)
Query: 185 QGRPGLPTRTMPRDTGQPTRTMLWDTGQPCVLPQGPAVT--PPAFPGVQETLPSLPVAPG 242
+G PGLP P P R D G P P GP PP PG P P PG
Sbjct: 56 EGHPGLPGFPGPEGPPGP-RGQKGDDGIPG--PPGPKGIRGPPGLPG----FPGTPGLPG 108
Query: 243 APGQRGRPSPYSLRVRGPRQDLPHLDGLHGAHDHHGL-GHASAQAAQQPTRAVQPSLGIP 301
PG G P P Q +P +G G G G Q P GIP
Sbjct: 109 MPGHDGAPGP---------QGIPGCNGTKGERGFPGSPGFPGLQGPPGPP-------GIP 152
Query: 302 HVVAEELEHSKPGGGRRSRELRPRYRPRTPWLRTVCRTQSPGGGGGQDPTALGAAALGTR 361
+ E PG S P+ P P PG G PT +
Sbjct: 153 GMKGE------PGSIIMSSLPGPKGNPGYP--------GPPGIQGLPGPTGIPGPIGPPG 198
Query: 362 PPRRRGLPLLTDAPVPRRVRALVQLQLRLHVLGGEGDADLDA-----------TRQAACR 410
PP G P P P+ + L+ G +G+ + Q
Sbjct: 199 PPGLMGPPGPPGLPGPKG-------NMGLNFQGPKGEKGEQGLQGPPGPPGQISEQKRPI 251
Query: 411 DREPAPETPARPLALGPLPRPGLRS-ARPPRQCRGEH-RLGPHAPMPSPRCPGE-AQGVT 467
D E P GP PG+R PP +GE G P GE Q
Sbjct: 252 DVEFQKGDQGLPGDRGPPGPPGIRGPPGPPGGEKGEKGEQGEPGKRGKPGKDGENGQPGI 311
Query: 468 DGRRASPSAPG-----GDQDRVSTTPQP------TAQPGSGAG---------PQRPGPTQ 507
G P PG G++ + T P +PG+G P PG
Sbjct: 312 PGLPGDPGYPGEPGRDGEKGQKGDTGPPGPPGLVIPRPGTGITIGEKGNIGLPGLPGEKG 371
Query: 508 KRGGRGVRVPEGSPARIAFSGRRGGAKAQPMAEAESLGDRERRDGGGAAG---GGAVAQL 564
+RG G++ P G P G G A P G+R ++ G G G
Sbjct: 372 ERGFPGIQGPPGLP------GPPGAAVMGPPGPPGFPGERGQKGDEGPPGISIPGPPGLD 425
Query: 565 RAVGQGALCAAPRDSGPRVCATVE--SGGIPRDPGGQG 600
G L P +GP + + E G P PG G
Sbjct: 426 GQPGAPGLPGPPGPAGPHIPPSDEICEPGPPGPPGSPG 463
Score = 48.9 bits (115), Expect = 1e-05
Identities = 94/389 (24%), Positives = 123/389 (31%), Gaps = 78/389 (20%)
Query: 178 FPRKQCSQGRPGLPTRTMPRD----TGQPTRTMLWDTGQPCVLPQGPAVTPPAFPGVQET 233
FP GR GL P+ GQP + G P + QGP PP PG
Sbjct: 779 FPGPPGPPGRTGLDGLPGPKGDVGPNGQPGP--MGPPGLPGIGVQGPP-GPPGIPGPI-- 833
Query: 234 LPSLPVAPGAPGQRGRPSPYSLRVRGPRQD-----------------LPHLDGLHGAHDH 276
P G PG++G P P L V GP + P L G GA
Sbjct: 834 --GQPGLHGIPGEKGDPGPPGLDVPGPPGERGSPGIPGAPGPIGPPGSPGLPGKAGASGF 891
Query: 277 HGL-GHASAQAAQQP--TRAVQPSLGIPHVVAEELEHSKPGGGRRSRELRPRYRPRTPWL 333
G G P + G+P + ++ +PG + E + P
Sbjct: 892 PGTKGEMGMMGPPGPPGPLGIPGRSGVPGLKGDDGLQGQPGLPGPTGEKGSKGEPGL--- 948
Query: 334 RTVCRTQSPGGGGGQDPTALGAAALGTRPPRRRGLPLLTDAPVPRRVRALVQLQLRLHVL 393
PG G DP LG+ P GLP + P+ + L
Sbjct: 949 --------PGPPGPMDPNLLGSKGEKGEP----GLPGIPGVSGPKGYQGL---------- 986
Query: 394 GGEGDADLDATRQAACRDREPAPE----TPARPLALGPLPRPGLRSARPPRQCRGEHRL- 448
GD P P+ P +P +GP PGL+ G +
Sbjct: 987 --PGDPGQPGLSGQPGLPGPPGPKGNPGLPGQPGLIGP---PGLKGTIGDMGFPGPQGVE 1041
Query: 449 GPHAPMPSPRCPGEAQGVTDGRRASPSAPGGDQDRVSTTPQPTAQPGSGAGPQRPGPTQK 508
GP P P PG G++ PG + P P +PG P PG
Sbjct: 1042 GPPGPSGVPGQPGSPG--LPGQKGDKGDPGISSIGLPGLPGPKGEPGLPGYPGNPGIKGS 1099
Query: 509 RGGRGVRVPEGSPARIAFSGRRGGAKAQP 537
G G+ G+P GAK QP
Sbjct: 1100 VGDPGLPGLPGTP----------GAKGQP 1118
Score = 46.6 bits (109), Expect = 7e-05
Identities = 120/481 (24%), Positives = 156/481 (32%), Gaps = 123/481 (25%)
Query: 179 PRKQCSQGRPGLPTRTMPRDTGQP-------TRTMLWDTGQP----CVLPQ-GPAVT--- 223
P K G+PG+P +P D G P + DTG P V+P+ G +T
Sbjct: 300 PGKDGENGQPGIPG--LPGDPGYPGEPGRDGEKGQKGDTGPPGPPGLVIPRPGTGITIGE 357
Query: 224 -----------------------PPAFPGVQETL----PSLPVAPGAPGQRGRPSPYSLR 256
PP PG P P PG GQ+G P +
Sbjct: 358 KGNIGLPGLPGEKGERGFPGIQGPPGLPGPPGAAVMGPPGPPGFPGERGQKGDEGPPGIS 417
Query: 257 VRGPRQDLPHLDGLHGAHDHHGLGHASAQAAQQPTRAVQPSLGIPHVVAEELEHSKPGGG 316
+ GP P LDG GA P P PH+ + E +PG
Sbjct: 418 IPGP----PGLDGQPGA----------------PGLPGPPGPAGPHIPPSD-EICEPG-- 454
Query: 317 RRSRELRPRYRPRTPWLRTVCRTQSPGGGGGQDPTALGAAALG-TRPPRRRGLPLLTDAP 375
P P +P + + Q G G + T G + PP + GLP L P
Sbjct: 455 -------PPGPPGSPGDKGLQGEQ--GVKGDKGDTCFNCIGTGISGPPGQPGLPGLPGPP 505
Query: 376 VPRRVRALVQLQLRLHVLGGEGD-ADLDATRQAACRDREPAPETPARPLALGP----LPR 430
L G +G+ AT AP P P + G L
Sbjct: 506 G------------SLGFPGQKGEKGQAGATGPKGLPGIPGAPGAPGFPGSKGEPGDILTF 553
Query: 431 PGLRSARPPRQCRGEHRLG--PHAP-------MPSPRCPGEAQGVT-DGRRASPSAPGGD 480
PG++ + G L P P +P P+ GE G+T G R P PG
Sbjct: 554 PGMKGDKGELGSPGAPGLPGLPGTPGQDGLPGLPGPK--GEPGGITFKGERGPPGNPG-- 609
Query: 481 QDRVSTTPQPTAQPGSGAGPQRPGPTQKRGGRGVRVPEGSPARIAFSGRRGGAKAQPMAE 540
+ P PG G PGP ++G +GV G P G G QP
Sbjct: 610 LPGLPGNIGPMGPPGFGP----PGPVGEKGIQGVAGNPGQPGIPGPKGDPGQTITQP--G 663
Query: 541 AESLGDRERRDGG-GAAGGGAVAQLRAVGQGALCAAPRDSGPRVCATVESGGIPRDPGGQ 599
L RDG G G + GQ L P G + G+P PG +
Sbjct: 664 KPGLPGNPGRDGDVGLPGDPGLP-----GQPGLPGIPGSKGE---PGIPGIGLPGPPGPK 715
Query: 600 G 600
G
Sbjct: 716 G 716
Score = 45.4 bits (106), Expect = 1e-04
Identities = 116/517 (22%), Positives = 160/517 (30%), Gaps = 94/517 (18%)
Query: 150 VRALLQDSGCEALLAGPGPIQGGGNWELFPRKQCSQGRPGLPTRTMPRDTGQPTRTMLWD 209
V L D G + PGP G S+G PGLP P D +L
Sbjct: 918 VPGLKGDDGLQGQPGLPGPTGEKG----------SKGEPGLPGPPGPMDPN-----LLGS 962
Query: 210 TGQPCVLPQGPAVTPPAFPGVQETLPSLPVAPGAPGQRGRPSPYSLRVRGPRQD--LPHL 267
G+ P P + + P + LP P PG GQ G P P GP+ + LP
Sbjct: 963 KGEKGE-PGLPGIPGVSGPKGYQGLPGDPGQPGLSGQPGLPGP-----PGPKGNPGLPGQ 1016
Query: 268 DGLHGAHDHHG----LGHASAQAAQQPT--RAVQPSLGIPHVVAEELEHSKPG------- 314
GL G G +G Q + P V G P + ++ + PG
Sbjct: 1017 PGLIGPPGLKGTIGDMGFPGPQGVEGPPGPSGVPGQPGSPGLPGQKGDKGDPGISSIGLP 1076
Query: 315 --GGRRSRELRPRYRPRTPWLRTVCRTQS----PGGGGGQDPTALGAAALGTRPPRRRGL 368
G + P Y P P ++ PG G + L PP +G+
Sbjct: 1077 GLPGPKGEPGLPGY-PGNPGIKGSVGDPGLPGLPGTPGAKGQPGLPGFPGTPGPPGPKGI 1135
Query: 369 ------PLLTDAPVPRRVRALVQLQLRLHVLGG--EGDADLDATRQAACRDREPAPE--- 417
P L P P V GG G + +D P P
Sbjct: 1136 SGPPGNPGLPGEPGP--------------VGGGGHPGQPGPPGEKGKPGQDGIPGPAGQK 1181
Query: 418 -TPARPLALGPLPRPGLRSARPPRQCRGEHRLGPHAPMPSPRCPGEAQGV--TDGRRASP 474
P +P P P PGL + G + + +P P+ G G P
Sbjct: 1182 GEPGQPGFGNPGP-PGLPGLSGQKGDGGLPGIPGNPGLPGPKGEPGFHGFPGVQGPPGPP 1240
Query: 475 SAPGGDQDRVSTTPQPTAQPGSGAGPQRPGPTQKRGGRGVRVPEGSPARIAFSGRRG--- 531
+PG + P P PG P GP G G++ +G+P + G G
Sbjct: 1241 GSPGPALEGPKGNPGPQGPPGRPGLPGPEGPPGLPGNGGIKGEKGNPGQPGLPGLPGLKG 1300
Query: 532 -----------------GAKAQPMAEAESLGDRERRDGGGAAGGGAVAQLRAVGQGALCA 574
G K P + G G + +G
Sbjct: 1301 DQGPPGLQGNPGRPGLNGMKGDPGLPGVPGFPGMKGPSGVPGSAGPEGEPGLIGPPGPPG 1360
Query: 575 APRDSGPRVCATVESG--GIPRDPGGQGHTLPENTWG 609
P SG + ++G GIP PG +G P+ G
Sbjct: 1361 LPGPSGQSIIIKGDAGPPGIPGQPGLKGLPGPQGPQG 1397
Score = 45.4 bits (106), Expect = 1e-04
Identities = 101/383 (26%), Positives = 121/383 (31%), Gaps = 95/383 (24%)
Query: 158 GCEALLAGPGPIQGGGNWELFPRKQCSQGRPGLPTRT-MPRDTGQPTRTMLWDTGQPCVL 216
G L PGP+ GGG+ P + G G P + +P GQ + GQP
Sbjct: 1140 GNPGLPGEPGPVGGGGH----PGQPGPPGEKGKPGQDGIPGPAGQKG-----EPGQPGFG 1190
Query: 217 PQGPAVTPPAFPGVQET-----LPSLPVAPGAPGQRGRPSPYSLR-VRGPRQDLPHLDGL 270
GP P PG+ LP +P PG PG +G P + V+GP P G
Sbjct: 1191 NPGP----PGLPGLSGQKGDGGLPGIPGNPGLPGPKGEPGFHGFPGVQGP----PGPPGS 1242
Query: 271 HGAHDHHGLGHASAQAAQQPTRAVQPSLGIPHVVAEELEHSKPGGGRRSRELRPRYRPRT 330
G G+ Q G P + E PG G E +P
Sbjct: 1243 PGPALEGPKGNPGPQGPP----------GRPGLPGPEGPPGLPGNGGIKGEKGNPGQPGL 1292
Query: 331 PWLRTVCRTQSPGGGGGQDPTALGAAALGTRPPRRRGLPLLTDAPVPRRVRALVQLQLRL 390
P L PG G Q P L P R GL
Sbjct: 1293 PGL--------PGLKGDQGPPGLQGN------PGRPGLN--------------------- 1317
Query: 391 HVLGGEGDADLDATRQAACRDREPAPETPARPLALGPLPRPGLRSARPPRQCRGEHRL-G 449
G +GD L P P P GP PG SA P GE L G
Sbjct: 1318 ---GMKGDPGL--------------PGVPGFPGMKGPSGVPG--SAGP----EGEPGLIG 1354
Query: 450 PHAPMPSPRCPGEAQGVTDGRRASPSAPGGDQDRVSTTPQ-PTAQPGSGAGPQRPGPTQK 508
P P P G++ + G P PG + PQ P PG P PG
Sbjct: 1355 PPGPPGLPGPSGQSI-IIKGDAGPPGIPGQPGLKGLPGPQGPQGLPGPTGPPGDPGRNGL 1413
Query: 509 RGGRGVRVPEGSPARIAFSGRRG 531
G G +G P G RG
Sbjct: 1414 PGFDGAGGRKGDPGLPGQPGTRG 1436
Score = 43.9 bits (102), Expect = 4e-04
Identities = 121/471 (25%), Positives = 152/471 (32%), Gaps = 77/471 (16%)
Query: 166 PGPIQGGGNWELFPRKQCSQGRPGLPTRTMPRDTGQPTRTMLWDTGQPCVLPQGPA---- 221
PGP+ G Q G PG P +P G P +T+ G+P LP P
Sbjct: 628 PGPVGEKGI-------QGVAGNPGQPG--IPGPKGDPGQTIT-QPGKPG-LPGNPGRDGD 676
Query: 222 VTPPAFPGVQETLPSLPVAPGAPGQRGRPSPYSLRVRGP--RQDLPHLDGLHGAHDHHGL 279
V P PG LP P PG PG +G P + + GP + P + G GA G
Sbjct: 677 VGLPGDPG----LPGQPGLPGIPGSKGEPGIPGIGLPGPPGPKGFPGIPGPPGAPGTPGR 732
Query: 280 GHASAQAAQQ--PTRAVQPSLGIPHVVAEE-LEHSKPGGGRRSRELRPRYRPRTPWLRTV 336
P +P +P L K G + P P P +
Sbjct: 733 IGLEGPPGPPGFPGPKGEPGFALPGPPGPPGLPGFKGALGPKGDRGFPG-PPGPPGRTGL 791
Query: 337 CRTQSPGG--GGGQDPTALGAAAL---GTR-PPRRRGLPLLTDAPVPRRVRALVQLQLRL 390
P G G P +G L G + PP G+P P+ Q L
Sbjct: 792 DGLPGPKGDVGPNGQPGPMGPPGLPGIGVQGPPGPPGIP----GPIG---------QPGL 838
Query: 391 HVLGGE-GDADLDATRQAACRDREPAPETPARPLALGPLPRPGL---RSARPPRQCRGE- 445
H + GE GD +P P P +GP PGL A +GE
Sbjct: 839 HGIPGEKGDPGPPGLDVPGPPGERGSPGIPGAPGPIGPPGSPGLPGKAGASGFPGTKGEM 898
Query: 446 HRLGPHAPMPSPRCPGEAQGV-----TDGRRASPSAPGGDQDRVSTTPQPTAQPGSGAGP 500
+GP P PG + GV DG + P PG PT + GS P
Sbjct: 899 GMMGPPGPPGPLGIPGRS-GVPGLKGDDGLQGQPGLPG-----------PTGEKGSKGEP 946
Query: 501 QRPGP-----TQKRGGRGVRVPEGSPARIAFSGRRG--GAKAQPMAEAESLGDRERRDGG 553
PGP G +G + G P SG +G G P S G
Sbjct: 947 GLPGPPGPMDPNLLGSKGEKGEPGLPGIPGVSGPKGYQGLPGDPGQPGLSGQPGLPGPPG 1006
Query: 554 GAAGGGAVAQLRAVGQGALCAAPRDSGPRVCATVES----GGIPRDPGGQG 600
G Q +G L D G VE G+P PG G
Sbjct: 1007 PKGNPGLPGQPGLIGPPGLKGTIGDMGFPGPQGVEGPPGPSGVPGQPGSPG 1057
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.317 0.137 0.442
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 33,888,072
Number of Sequences: 37866
Number of extensions: 2311352
Number of successful extensions: 19405
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 145
Number of HSP's successfully gapped in prelim test: 1136
Number of HSP's that attempted gapping in prelim test: 11505
Number of HSP's gapped (non-prelim): 5350
length of query: 609
length of database: 18,247,518
effective HSP length: 108
effective length of query: 501
effective length of database: 14,157,990
effective search space: 7093152990
effective search space used: 7093152990
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 65 (29.6 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.