BLASTP 2.2.11 [Jun-05-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|239757091 PREDICTED: hypothetical protein [Homo sapiens] (194 letters) Database: hs.faa 37,866 sequences; 18,247,518 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|239757091 PREDICTED: hypothetical protein [Homo sapiens] 404 e-113 gi|239751597 PREDICTED: hypothetical protein XP_002347925 [Homo ... 404 e-113 gi|239746112 PREDICTED: hypothetical protein XP_002344192 [Homo ... 404 e-113 gi|4502951 collagen type III alpha 1 preproprotein [Homo sapiens] 47 1e-05 gi|111118976 collagen, type II, alpha 1 isoform 1 precursor [Hom... 45 3e-05 gi|111118974 collagen, type II, alpha 1 isoform 2 precursor [Hom... 45 3e-05 gi|18105032 type X collagen alpha 1 precursor [Homo sapiens] 45 5e-05 gi|4826998 splicing factor proline/glutamine rich (polypyrimidin... 45 5e-05 gi|98985810 alpha 1 type XI collagen isoform B preproprotein [Ho... 44 7e-05 gi|98985808 alpha 1 type XI collagen isoform C preproprotein [Ho... 44 7e-05 gi|98985806 alpha 1 type XI collagen isoform A preproprotein [Ho... 44 7e-05 gi|48762934 alpha 2 type I collagen [Homo sapiens] 44 7e-05 gi|110349772 alpha 1 type I collagen preproprotein [Homo sapiens] 43 1e-04 gi|89276751 alpha 1 type V collagen preproprotein [Homo sapiens] 43 2e-04 gi|25777671 protein phosphatase 1, regulatory subunit 10 [Homo s... 42 4e-04 gi|110832843 TBP-associated factor 4 [Homo sapiens] 42 4e-04 gi|110735435 collagen, type V, alpha 3 preproprotein [Homo sapiens] 42 4e-04 gi|239753839 PREDICTED: hypothetical protein [Homo sapiens] 41 6e-04 gi|119508426 alpha 3 type IX collagen [Homo sapiens] 41 6e-04 gi|148536823 type IV alpha 6 collagen isoform A precursor [Homo ... 40 0.001 gi|16357503 type IV alpha 6 collagen isoform B precursor [Homo s... 40 0.001 gi|206597445 alpha 1 type XVIII collagen isoform 3 precursor [Ho... 40 0.001 gi|110611233 alpha 1 type XVIII collagen isoform 2 precursor [Ho... 40 0.001 gi|110611235 alpha 1 type XVIII collagen isoform 1 precursor [Ho... 40 0.001 gi|148536825 alpha 1 type IV collagen preproprotein [Homo sapiens] 39 0.002 gi|239754955 PREDICTED: similar to COL22A1 protein [Homo sapiens] 39 0.002 gi|47778921 alpha 1 type XIX collagen precursor [Homo sapiens] 39 0.002 gi|40805823 collagen, type XXII, alpha 1 [Homo sapiens] 39 0.002 gi|122937269 Wilms tumor 1 interacting protein [Homo sapiens] 39 0.002 gi|239748099 PREDICTED: hypothetical protein [Homo sapiens] 39 0.003 >gi|239757091 PREDICTED: hypothetical protein [Homo sapiens] Length = 194 Score = 404 bits (1037), Expect = e-113 Identities = 194/194 (100%), Positives = 194/194 (100%) Query: 1 MHGGVRSLVSTPASWSAAGPPDGAGRPAEHEATGGASSLHIKCMEAASLLPRPPGKAPPG 60 MHGGVRSLVSTPASWSAAGPPDGAGRPAEHEATGGASSLHIKCMEAASLLPRPPGKAPPG Sbjct: 1 MHGGVRSLVSTPASWSAAGPPDGAGRPAEHEATGGASSLHIKCMEAASLLPRPPGKAPPG 60 Query: 61 AAKSTSRVHCRAAEGGGLRPVPAVPLPGPAGRSGGPGAWSAQKHGGHLSGRAGGTGRKTE 120 AAKSTSRVHCRAAEGGGLRPVPAVPLPGPAGRSGGPGAWSAQKHGGHLSGRAGGTGRKTE Sbjct: 61 AAKSTSRVHCRAAEGGGLRPVPAVPLPGPAGRSGGPGAWSAQKHGGHLSGRAGGTGRKTE 120 Query: 121 GLARAPGGAPGHGLQGGQPHCCLQADSRRILLLAEQALRAGLGARPSALDLVLSCAASVP 180 GLARAPGGAPGHGLQGGQPHCCLQADSRRILLLAEQALRAGLGARPSALDLVLSCAASVP Sbjct: 121 GLARAPGGAPGHGLQGGQPHCCLQADSRRILLLAEQALRAGLGARPSALDLVLSCAASVP 180 Query: 181 FIHTALGRPRRCPL 194 FIHTALGRPRRCPL Sbjct: 181 FIHTALGRPRRCPL 194 >gi|239751597 PREDICTED: hypothetical protein XP_002347925 [Homo sapiens] Length = 194 Score = 404 bits (1037), Expect = e-113 Identities = 194/194 (100%), Positives = 194/194 (100%) Query: 1 MHGGVRSLVSTPASWSAAGPPDGAGRPAEHEATGGASSLHIKCMEAASLLPRPPGKAPPG 60 MHGGVRSLVSTPASWSAAGPPDGAGRPAEHEATGGASSLHIKCMEAASLLPRPPGKAPPG Sbjct: 1 MHGGVRSLVSTPASWSAAGPPDGAGRPAEHEATGGASSLHIKCMEAASLLPRPPGKAPPG 60 Query: 61 AAKSTSRVHCRAAEGGGLRPVPAVPLPGPAGRSGGPGAWSAQKHGGHLSGRAGGTGRKTE 120 AAKSTSRVHCRAAEGGGLRPVPAVPLPGPAGRSGGPGAWSAQKHGGHLSGRAGGTGRKTE Sbjct: 61 AAKSTSRVHCRAAEGGGLRPVPAVPLPGPAGRSGGPGAWSAQKHGGHLSGRAGGTGRKTE 120 Query: 121 GLARAPGGAPGHGLQGGQPHCCLQADSRRILLLAEQALRAGLGARPSALDLVLSCAASVP 180 GLARAPGGAPGHGLQGGQPHCCLQADSRRILLLAEQALRAGLGARPSALDLVLSCAASVP Sbjct: 121 GLARAPGGAPGHGLQGGQPHCCLQADSRRILLLAEQALRAGLGARPSALDLVLSCAASVP 180 Query: 181 FIHTALGRPRRCPL 194 FIHTALGRPRRCPL Sbjct: 181 FIHTALGRPRRCPL 194 >gi|239746112 PREDICTED: hypothetical protein XP_002344192 [Homo sapiens] Length = 194 Score = 404 bits (1037), Expect = e-113 Identities = 194/194 (100%), Positives = 194/194 (100%) Query: 1 MHGGVRSLVSTPASWSAAGPPDGAGRPAEHEATGGASSLHIKCMEAASLLPRPPGKAPPG 60 MHGGVRSLVSTPASWSAAGPPDGAGRPAEHEATGGASSLHIKCMEAASLLPRPPGKAPPG Sbjct: 1 MHGGVRSLVSTPASWSAAGPPDGAGRPAEHEATGGASSLHIKCMEAASLLPRPPGKAPPG 60 Query: 61 AAKSTSRVHCRAAEGGGLRPVPAVPLPGPAGRSGGPGAWSAQKHGGHLSGRAGGTGRKTE 120 AAKSTSRVHCRAAEGGGLRPVPAVPLPGPAGRSGGPGAWSAQKHGGHLSGRAGGTGRKTE Sbjct: 61 AAKSTSRVHCRAAEGGGLRPVPAVPLPGPAGRSGGPGAWSAQKHGGHLSGRAGGTGRKTE 120 Query: 121 GLARAPGGAPGHGLQGGQPHCCLQADSRRILLLAEQALRAGLGARPSALDLVLSCAASVP 180 GLARAPGGAPGHGLQGGQPHCCLQADSRRILLLAEQALRAGLGARPSALDLVLSCAASVP Sbjct: 121 GLARAPGGAPGHGLQGGQPHCCLQADSRRILLLAEQALRAGLGARPSALDLVLSCAASVP 180 Query: 181 FIHTALGRPRRCPL 194 FIHTALGRPRRCPL Sbjct: 181 FIHTALGRPRRCPL 194 >gi|4502951 collagen type III alpha 1 preproprotein [Homo sapiens] Length = 1466 Score = 46.6 bits (109), Expect = 1e-05 Identities = 41/133 (30%), Positives = 50/133 (37%), Gaps = 27/133 (20%) Query: 3 GGVRSLVSTPASWSAAGPPDGAGRPAEHEATGGASSLHIKCMEAASLLPRPPGK----AP 58 GG + P AGPP G E + GG + A LP PPG P Sbjct: 836 GGPPGVAGPPGGSGPAGPPGPQGVKGERGSPGGPGAAG---FPGARGLPGPPGSNGNPGP 892 Query: 59 PGAAKSTSRVHCRAAEGGGLRPVPAVPLPGPAGRSGGPGAWSAQKHGGHLSGRAGGTGRK 118 PG + S + +G PGPAG +G PG+ G AG G K Sbjct: 893 PGPSGSPGK------DGP----------PGPAGNTGAPGSPGVSGP----KGDAGQPGEK 932 Query: 119 TEGLARAPGGAPG 131 A+ P GAPG Sbjct: 933 GSPGAQGPPGAPG 945 Score = 42.7 bits (99), Expect = 2e-04 Identities = 45/136 (33%), Positives = 55/136 (40%), Gaps = 16/136 (11%) Query: 12 PASWSAAGPPDGAGRPAEHEATGGASS------LHIKCMEAASLLPRPPGKAPPGAAKST 65 P S +GP AG+P E + G L I + A L PPG P + Sbjct: 914 PGSPGVSGPKGDAGQPGEKGSPGAQGPPGAPGPLGIAGITGARGLAGPPGMPGPRGSPGP 973 Query: 66 SRVHCRAAEGG-----GLRPVPAVP-LPGPAGRSGGPGAWSAQKHGGHLSGRAGGTGRKT 119 V + + G G R P LPG AG +G PG G L GR G G K Sbjct: 974 QGVKGESGKPGANGLSGERGPPGPQGLPGLAGTAGEPGRDGNPGSDG-LPGRDGSPGGKG 1032 Query: 120 E-GLARAPG--GAPGH 132 + G +PG GAPGH Sbjct: 1033 DRGENGSPGAPGAPGH 1048 Score = 40.8 bits (94), Expect = 7e-04 Identities = 42/143 (29%), Positives = 50/143 (34%), Gaps = 12/143 (8%) Query: 4 GVRSLVSTPASWSAAGPPD-----GAGRPAEHEATGGASSLHIKCMEAASL-LPRPPG-K 56 G L P AGPP GA P G L E L P P G K Sbjct: 684 GPPGLAGAPGLRGGAGPPGPEGGKGAAGPPGPPGAAGTPGLQGMPGERGGLGSPGPKGDK 743 Query: 57 APPGAAKSTSRVHCRAAEGGGLRPVPAVPLPGPAGRSGGPGAWSAQKHGGHLSGRAGGTG 116 PG + + G P + PGPAG+ G G A G ++G G G Sbjct: 744 GEPGGPGADGV----PGKDGPRGPTGPIGPPGPAGQPGDKGEGGAPGLPG-IAGPRGSPG 798 Query: 117 RKTEGLARAPGGAPGHGLQGGQP 139 + E P G PG Q G+P Sbjct: 799 ERGETGPPGPAGFPGAPGQNGEP 821 Score = 40.4 bits (93), Expect = 0.001 Identities = 41/137 (29%), Positives = 46/137 (33%), Gaps = 11/137 (8%) Query: 4 GVRSLVSTPASWSAAGPPDGAGRPAEHEATGGASSLHIKCMEAASLLPRPPGKAPPGAAK 63 G+ L T G P G P + GG A P PG PPG Sbjct: 999 GLPGLAGTAGEPGRDGNPGSDGLPGRDGSPGGKGDRGENGSPGAPGAPGHPG--PPGPVG 1056 Query: 64 STSRVHCRAAEGGGLRPVPAVPLPGPAGRSGGPGAWSAQKHGGHLSGRAGGTGRKTEGLA 123 + R G P PGPAG G PG + G +G G G K G Sbjct: 1057 PAGKSGDRGESG----PAGPAGAPGPAGSRGAPGPQGPRGDKGE-TGERGAAGIK--GHR 1109 Query: 124 RAPG--GAPGHGLQGGQ 138 PG GAPG GQ Sbjct: 1110 GFPGNPGAPGSPGPAGQ 1126 Score = 39.3 bits (90), Expect = 0.002 Identities = 42/145 (28%), Positives = 50/145 (34%), Gaps = 19/145 (13%) Query: 4 GVRSLVSTPASWSAAGPPDGAGRPAEHEATGGASSLHIKCMEAASLLPRPPG-KAPPGAA 62 G R L P S GPP +G P + G A + + P PG P G A Sbjct: 876 GARGLPGPPGSNGNPGPPGPSGSPGKDGPPGPAGN---------TGAPGSPGVSGPKGDA 926 Query: 63 KSTSRVHCRAAEGGGLRPVP--------AVPLPGPAGRSGGPGAWSAQKHGGHLSGRAGG 114 A+G P P A L GP G G G+ Q G SG+ G Sbjct: 927 GQPGEKGSPGAQGPPGAPGPLGIAGITGARGLAGPPGMPGPRGSPGPQGVKGE-SGKPGA 985 Query: 115 TGRKTEGLARAPGGAPGHGLQGGQP 139 G E P G PG G+P Sbjct: 986 NGLSGERGPPGPQGLPGLAGTAGEP 1010 Score = 38.5 bits (88), Expect = 0.004 Identities = 38/136 (27%), Positives = 44/136 (32%), Gaps = 1/136 (0%) Query: 4 GVRSLVSTPASWSAAGPPDGAGRPAEHEATGGASSLHIKCMEAASLLPRPPGKAPPGAAK 63 G + P AAG P G P E G K PGK P Sbjct: 705 GGKGAAGPPGPPGAAGTPGLQGMPGERGGLGSPGPKGDKGEPGGPGADGVPGKDGPRGPT 764 Query: 64 STSRVHCRAAEGGGLRPVPAVPLPGPAGRSGGPGAWSAQKHGGHLSGRAGGTGRKTEGLA 123 A + G A LPG AG G PG G +G G G+ E Sbjct: 765 GPIGPPGPAGQPGDKGEGGAPGLPGIAGPRGSPGERGETGPPGP-AGFPGAPGQNGEPGG 823 Query: 124 RAPGGAPGHGLQGGQP 139 + GAPG +GG P Sbjct: 824 KGERGAPGEKGEGGPP 839 Score = 38.1 bits (87), Expect = 0.005 Identities = 40/128 (31%), Positives = 47/128 (36%), Gaps = 16/128 (12%) Query: 12 PASWSAAGPPDGAGRPAEHEATGGASSLHIKCMEAASLLPRPPGKAPPGAAKSTSRVHCR 71 P + G P G + TG + IK P PG PG A Sbjct: 1076 PGPAGSRGAPGPQGPRGDKGETGERGAAGIKGHRGFPGNPGAPGS--PGPA--------- 1124 Query: 72 AAEGGGLRPVPAVPLPGPAGRSGGPGAWSAQKHGGHLSGRAGGTGRKTEGLARAPGGAPG 131 +G P PA P GP G SG PG H G + G G G + E R G+PG Sbjct: 1125 GQQGAIGSPGPAGPR-GPVGPSGPPGKDGTSGHPGPI-GPPGPRGNRGE---RGSEGSPG 1179 Query: 132 HGLQGGQP 139 H Q G P Sbjct: 1180 HPGQPGPP 1187 Score = 36.2 bits (82), Expect = 0.018 Identities = 39/133 (29%), Positives = 44/133 (33%), Gaps = 11/133 (8%) Query: 12 PASWSAAGPPDGAGRPAEHEATGGASSLHIKCMEAASLLPRPPG-KAPPGAAKSTSRVHC 70 P S A G AG P + A G + A P PPG PG Sbjct: 344 PGSPGAKGEVGPAGSPGSNGAPGQRGEPGPQGHAGAQGPPGPPGINGSPGGKGEMGPAGI 403 Query: 71 RAAEG--GGLRPVPAVPLPGPAGRSGGPGAWSAQKHGGHLSGRAGGTGRKTEGLARAPG- 127 A G G P PGPAG +G PG G + R G A PG Sbjct: 404 PGAPGLMGARGP------PGPAGANGAPGLRGGAGEPGKNGAKGEPGPRGERGEAGIPGV 457 Query: 128 -GAPGHGLQGGQP 139 GA G + G P Sbjct: 458 PGAKGEDGKDGSP 470 Score = 34.3 bits (77), Expect = 0.068 Identities = 35/136 (25%), Positives = 41/136 (30%), Gaps = 4/136 (2%) Query: 4 GVRSLVSTPASWSAAGPPDGAGRPAEHEATGGASSLHIKCMEAASLLPRPPGKAPPGAAK 63 G + P A GPP AG GGA A P P G+ Sbjct: 399 GPAGIPGAPGLMGARGPPGPAGANGAPGLRGGAGE---PGKNGAKGEPGPRGERGEAGIP 455 Query: 64 STSRVHCRAAEGGGLRPVPAVPLPGPAGRSGGPGAWSAQKHGGHLSGRAGGTGRKTEGLA 123 + G A LPG AG G PG G + G G G + Sbjct: 456 GVPGAKGEDGKDGSPGEPGANGLPGAAGERGAPGFRGPAGPNG-IPGEKGPAGERGAPGP 514 Query: 124 RAPGGAPGHGLQGGQP 139 P GA G + G P Sbjct: 515 AGPRGAAGEPGRDGVP 530 Score = 33.1 bits (74), Expect = 0.15 Identities = 28/89 (31%), Positives = 40/89 (44%), Gaps = 16/89 (17%) Query: 59 PGAAKSTSRVHCRAAEGGGLRPVPAVPLPGPAGRSGGPGAWSAQKHGGHLS--------G 110 PGAA + R ++G +P P PGP G +G PG+ A+ G G Sbjct: 314 PGAAGARGNDGARGSDG---QPGP----PGPPGTAGFPGSPGAKGEVGPAGSPGSNGAPG 366 Query: 111 RAGGTGRKTEGLARAPGGAPG-HGLQGGQ 138 + G G + A+ P G PG +G GG+ Sbjct: 367 QRGEPGPQGHAGAQGPPGPPGINGSPGGK 395 Score = 32.3 bits (72), Expect = 0.26 Identities = 41/134 (30%), Positives = 48/134 (35%), Gaps = 15/134 (11%) Query: 19 GPPDGAGRPAEHEATGGASSLHIKCMEAASLLPR----PPGKAP-PGAAKSTSRVHCRAA 73 GPP AG+P + + GGA L S R PPG A PGA + Sbjct: 768 GPPGPAGQPGD-KGEGGAPGLPGIAGPRGSPGERGETGPPGPAGFPGAPGQNGEPGGKGE 826 Query: 74 EGG------GLRPVPAVPLPGPAGRSGGPGAWSAQKHGGHLSGRAGGTGRKTEGLARAPG 127 G G P A P PG +G +G PG + G G GL PG Sbjct: 827 RGAPGEKGEGGPPGVAGP-PGGSGPAGPPGPQGVKGERGSPGGPGAAGFPGARGLPGPPG 885 Query: 128 --GAPGHGLQGGQP 139 G PG G P Sbjct: 886 SNGNPGPPGPSGSP 899 Score = 32.0 bits (71), Expect = 0.34 Identities = 42/136 (30%), Positives = 51/136 (37%), Gaps = 12/136 (8%) Query: 11 TPASWSAAGPPDGAGRPAEHEATGGASSLHIKCMEAASLLPRPPGKAPP-GAAKSTSRVH 69 +P A G P AG G A I + + PG A P GAA R Sbjct: 469 SPGEPGANGLPGAAGERGAPGFRGPAGPNGIPGEKGPAGERGAPGPAGPRGAAGEPGRDG 528 Query: 70 CRAAEGGGLRPVPAVPLPGPAGRSGGPGAWSAQKHGGHLSGRAGGTG-RKTEGLARAPG- 127 G G+R +P P G G G PG +Q G G G +G R G+ PG Sbjct: 529 VPG--GPGMRGMPGSP--GGPGSDGKPGPPGSQGESGR-PGPPGPSGPRGQPGVMGFPGP 583 Query: 128 ----GAPGHGLQGGQP 139 GAPG + G P Sbjct: 584 KGNDGAPGKNGERGGP 599 Score = 32.0 bits (71), Expect = 0.34 Identities = 32/96 (33%), Positives = 39/96 (40%), Gaps = 17/96 (17%) Query: 53 PPGKAPPGAAKSTSRVHCRAAEGGGLRPVPAVPLPGPAGRSGGPGAWSAQKHGGHLSGRA 112 PPG PG K + GL+ +P GP G +G PG + G G Sbjct: 619 PPGPTGPGGDKGDTG----PPGPQGLQGLPGTG--GPPGENGKPGEPGPKGDAG-APGAP 671 Query: 113 GGTG-------RKTEGLARAP---GGAPGHGLQGGQ 138 GG G R GLA AP GGA G +GG+ Sbjct: 672 GGKGDAGAPGERGPPGLAGAPGLRGGAGPPGPEGGK 707 Score = 32.0 bits (71), Expect = 0.34 Identities = 36/121 (29%), Positives = 41/121 (33%), Gaps = 15/121 (12%) Query: 19 GPPDGAGRPAEHEATGGASSLHIKCMEAASLLPRPPGKAPPGAAKSTSRVHCRAAEG--G 76 GPP G+P E G A + P GK GA A G G Sbjct: 648 GPPGENGKPGEPGPKGDAGAPGA-----------PGGKGDAGAPGERGPPGLAGAPGLRG 696 Query: 77 GLRPVPAVPLPGPAGRSGGPGAWSAQKHGGHLSGRAGGTGRK-TEGLARAPGGAPGHGLQ 135 G P G AG G PGA G + G GG G +G PGG G+ Sbjct: 697 GAGPPGPEGGKGAAGPPGPPGAAGTPGLQG-MPGERGGLGSPGPKGDKGEPGGPGADGVP 755 Query: 136 G 136 G Sbjct: 756 G 756 Score = 30.0 bits (66), Expect = 1.3 Identities = 31/115 (26%), Positives = 38/115 (33%), Gaps = 3/115 (2%) Query: 19 GPPDGAGRPAEHEATGGASSLHIKCMEAASLLPRPPG--KAPPGAAKSTSRVHCRAAEGG 76 GP G P G I + P PPG ++ P ++ S + Sbjct: 103 GPQGPKGDPGPPGIPGRNGDPGIPGQPGSPGSPGPPGICESCPTGPQNYSPQYDSYDVKS 162 Query: 77 GLRPVPAVPLPGPAGRSGGPGAWSAQKHGGHLSGRAGGTGRKTEGLARAPGGAPG 131 G+ PGPAG G PG H G G G G E P G PG Sbjct: 163 GVAVGGLAGYPGPAGPPGPPGPPGTSGHPGS-PGSPGYQGPPGEPGQAGPSGPPG 216 Score = 29.6 bits (65), Expect = 1.7 Identities = 40/143 (27%), Positives = 45/143 (31%), Gaps = 25/143 (17%) Query: 12 PASWSAAGPPDGAGRPAEHEATGGASSLHIKCMEAASLLPRPPG-KAPPG-----AAKST 65 P A GP AG+ E G LP PPG K P G K Sbjct: 215 PGPPGAIGPSGPAGKDGESGRPGRPGERG---------LPGPPGIKGPAGIPGFPGMKGH 265 Query: 66 SRVHCRAAEGG-----GLRPVPAVP----LPGPAGRSGGPGAWSAQKHGGHLSGRAGGTG 116 R E G GL+ +P PGP G G PG G R Sbjct: 266 RGFDGRNGEKGETGAPGLKGENGLPGENGAPGPMGPRGAPGERGRPGLPGAAGARGNDGA 325 Query: 117 RKTEGLARAPGGAPGHGLQGGQP 139 R ++G P G PG G P Sbjct: 326 RGSDG-QPGPPGPPGTAGFPGSP 347 Score = 28.5 bits (62), Expect = 3.7 Identities = 32/120 (26%), Positives = 39/120 (32%), Gaps = 32/120 (26%) Query: 18 AGPPDGAGRPAEHEATGGASSLHIKCMEAASLLPRPPGKAPPGAAKSTSRVHCRAAEGGG 77 AGPP G P G S P + PPG +A G Sbjct: 176 AGPPGPPGPPGTSGHPGSPGS--------------PGYQGPPGEPG-------QAGPSGP 214 Query: 78 LRPVPAVPLPGPAGRSGGPGAWSAQKHGGHLSGRAGGTGRKTEGLARAPGGAPGH-GLQG 136 P A+ GPAG+ G G GR G G + P G PG G++G Sbjct: 215 PGPPGAIGPSGPAGKDGESGR----------PGRPGERGLPGPPGIKGPAGIPGFPGMKG 264 Score = 27.7 bits (60), Expect = 6.4 Identities = 28/109 (25%), Positives = 34/109 (31%), Gaps = 2/109 (1%) Query: 2 HGGVRSLVSTPASWSAAGPPDGAGRPAEHEATGGASSLHIKCMEAASLLPRPPGKAPPGA 61 H G P S AG G P G + S P P G PPG Sbjct: 1108 HRGFPGNPGAPGSPGPAGQQGAIGSPGPAGPRGPVGPSGPPGKDGTSGHPGPIG--PPGP 1165 Query: 62 AKSTSRVHCRAAEGGGLRPVPAVPLPGPAGRSGGPGAWSAQKHGGHLSG 110 + + G +P P P P GG GA + GG +G Sbjct: 1166 RGNRGERGSEGSPGHPGQPGPPGPPGAPGPCCGGVGAAAIAGIGGEKAG 1214 >gi|111118976 collagen, type II, alpha 1 isoform 1 precursor [Homo sapiens] Length = 1487 Score = 45.4 bits (106), Expect = 3e-05 Identities = 44/147 (29%), Positives = 52/147 (35%), Gaps = 21/147 (14%) Query: 4 GVRSLVSTPASWSAAGPPDGAGRPAEHEATGGASSLHIKCMEAASLLPRPPGKA------ 57 GV+ +P + GP G P E TG A + + + PPG Sbjct: 306 GVKGESGSPGENGSPGPMGPRGLPGERGRTGPAGAAGARGNDGQPGPAGPPGPVGPAGGP 365 Query: 58 ----PPGAAKSTSRVHCRAAEGG-GLRPVPAVP-LPGPAGRSGGPGAWSAQKHGGHLSGR 111 PGA R EG G R P P PGPAG SG PG + G Sbjct: 366 GFPGAPGAKGEAGPTGARGPEGAQGPRGEPGTPGSPGPAGASGNPGT-------DGIPGA 418 Query: 112 AGGTGRKTEGLARAPGGAPGHGLQGGQ 138 G G G+A APG G G Q Sbjct: 419 KGSAG--APGIAGAPGFPGPRGPPGPQ 443 Score = 41.2 bits (95), Expect = 6e-04 Identities = 45/134 (33%), Positives = 47/134 (35%), Gaps = 11/134 (8%) Query: 4 GVRSLVSTPASWSAAGPPDGAGRPAEHEATGGASSLHIKCMEAASLLPRPPGKAPPGAAK 63 G+R L AAGPP AG PA GA LP PPG G Sbjct: 627 GLRGLPGKDGETGAAGPPGPAG-PAGERGEQGAPG-----PSGFQGLPGPPGPPGEGGKP 680 Query: 64 STSRVHCRAAEGGGLRPVPAVPLPGPAGRSGGPGAWSAQKHGGHLSGRAGGTGRK-TEGL 122 V A G + P P G G PGA Q G L G G G K G Sbjct: 681 GDQGVPGEAGAPGLVGPRGERGFP---GERGSPGAQGLQGPRG-LPGTPGTDGPKGASGP 736 Query: 123 ARAPGGAPGHGLQG 136 A PG GLQG Sbjct: 737 AGPPGAQGPPGLQG 750 Score = 41.2 bits (95), Expect = 6e-04 Identities = 44/136 (32%), Positives = 52/136 (38%), Gaps = 12/136 (8%) Query: 4 GVRSLVSTPASWSAAGPPDGAGRPAEHEATGGASSLHIKCMEAASLLPRPPGKAP--PGA 61 G R P AGPP G+P G A +A + P+ P AP G Sbjct: 822 GERGETGPPGPAGFAGPPGADGQPGAKGEQGEAGQKG----DAGAPGPQGPSGAPGPQGP 877 Query: 62 AKSTSRVHCRAAEGGGLRPVPAVPLPGPAGRSGGPGAWSAQKHGGHLSGRAGGTGRK-TE 120 T R A+G P A PG AGR G PG+ G G +G G K Sbjct: 878 TGVTGPKGARGAQG----PPGATGFPGAAGRVGPPGSNGNPGPPGP-PGPSGKDGPKGAR 932 Query: 121 GLARAPGGAPGHGLQG 136 G + PG A GLQG Sbjct: 933 GDSGPPGRAGEPGLQG 948 Score = 38.1 bits (87), Expect = 0.005 Identities = 41/134 (30%), Positives = 49/134 (36%), Gaps = 16/134 (11%) Query: 4 GVRSLVSTPASWSAAGPPDGAGRPAEHEATGGASSLHIKCMEAASLLPRPPG----KAPP 59 G R TP G G P A G A + +K + PG + P Sbjct: 273 GARGFPGTPG---LPGVKGHRGYPGLDGAKGEAGAPGVKGESGSPGENGSPGPMGPRGLP 329 Query: 60 GAAKSTSRVHCRAAEGGGLRPVPAVPLP--GPAGRSGGPGAWSAQKHGGHLSGRAGGTGR 117 G T A G +P PA P GPAG G PGA A+ G AG TG Sbjct: 330 GERGRTGPAGAAGARGNDGQPGPAGPPGPVGPAGGPGFPGAPGAK-------GEAGPTGA 382 Query: 118 KTEGLARAPGGAPG 131 + A+ P G PG Sbjct: 383 RGPEGAQGPRGEPG 396 Score = 36.6 bits (83), Expect = 0.014 Identities = 38/131 (29%), Positives = 48/131 (36%), Gaps = 11/131 (8%) Query: 19 GPPDGAGRPAEHEATGGASSLHIKCMEAASLLPRPPGK----APPGAAKSTSRVHCRAAE 74 GP G G P A G A + E A PG P GA+ + A+ Sbjct: 360 GPAGGPGFPGAPGAKGEAGPTGARGPEGAQGPRGEPGTPGSPGPAGASGNPGTDGIPGAK 419 Query: 75 GG----GLRPVPAVPLP-GPAGRSGGPGAWSAQKHGGH--LSGRAGGTGRKTEGLARAPG 127 G G+ P P P GP G G G + G ++G G G K E P Sbjct: 420 GSAGAPGIAGAPGFPGPRGPPGPQGATGPLGPKGQTGEPGIAGFKGEQGPKGEPGPAGPQ 479 Query: 128 GAPGHGLQGGQ 138 GAPG + G+ Sbjct: 480 GAPGPAGEEGK 490 Score = 35.4 bits (80), Expect = 0.031 Identities = 46/143 (32%), Positives = 51/143 (35%), Gaps = 17/143 (11%) Query: 4 GVRSLVSTPASWSAAGPPDGAGRPAEHEATGGASSLHIKCMEAASLLPRPPGKAPPGAAK 63 G R TP S GP +G P G S + A P P G PPG Sbjct: 390 GPRGEPGTPGS---PGPAGASGNPGTDGIPGAKGSAGAPGIAGAPGFPGPRG--PPGPQG 444 Query: 64 STSRVHCRAAEG-----GGLRPVPAVPLPGPAGRSGGPG-AWSAQKHGGHLSGRAGGTGR 117 +T + + G G PGPAG G PG A K G G GG G Sbjct: 445 ATGPLGPKGQTGEPGIAGFKGEQGPKGEPGPAGPQGAPGPAGEEGKRGAR--GEPGGVGP 502 Query: 118 -KTEGLARAPG--GAPGH-GLQG 136 G APG G PG GL G Sbjct: 503 IGPPGERGAPGNRGFPGQDGLAG 525 Score = 35.4 bits (80), Expect = 0.031 Identities = 37/138 (26%), Positives = 45/138 (32%), Gaps = 11/138 (7%) Query: 4 GVRSLVSTPASWSAAGPPDGAGRPAEHEATGGASSLHIKCMEAASLLPRPPGKAPPGAAK 63 G+ P GP G TG K + P P G P GA Sbjct: 426 GIAGAPGFPGPRGPPGPQGATGPLGPKGQTGEPGIAGFKGEQGPKGEPGPAG--PQGAPG 483 Query: 64 STSRVHCRAAEG--GGLRPVPAVPLPGPAGRSGGPGAWSAQKHGGHLSGRAGGTGRKTEG 121 R A G GG+ P+ GP G G PG G L+G G G + Sbjct: 484 PAGEEGKRGARGEPGGVGPI------GPPGERGAPGNRGFPGQDG-LAGPKGAPGERGPS 536 Query: 122 LARAPGGAPGHGLQGGQP 139 P GA G + G+P Sbjct: 537 GLAGPKGANGDPGRPGEP 554 Score = 35.0 bits (79), Expect = 0.040 Identities = 40/141 (28%), Positives = 46/141 (32%), Gaps = 28/141 (19%) Query: 17 AAGPPDGAGRPAEHEATGGASSLHIKCMEAASLLPRPPGK----------APPGAAKSTS 66 A GPP G P E A G A + PGK PPG A + Sbjct: 742 AQGPPGLQGMPGERGAAGIAGPKGDRGDVGEKGPEGAPGKDGGRGLTGPIGPPGPAGANG 801 Query: 67 RVHCRAAEG----GGLRPVPA----VPLPGPAGRSGGPGAWSAQKHGGHLSGRAGGTGRK 118 G G R P PGPAG +G PGA G+ G G + Sbjct: 802 EKGEVGPPGPAGSAGARGAPGERGETGPPGPAGFAGPPGA----------DGQPGAKGEQ 851 Query: 119 TEGLARAPGGAPGHGLQGGQP 139 E + GAPG G P Sbjct: 852 GEAGQKGDAGAPGPQGPSGAP 872 Score = 34.7 bits (78), Expect = 0.052 Identities = 36/129 (27%), Positives = 46/129 (35%), Gaps = 10/129 (7%) Query: 12 PASWSAAGPPDGAGRPAEHEATGGASSLHIKCMEAASLLPRPPGKAP-------PGAAKS 64 P AGPP G P + +G + + + PG+ PG + Sbjct: 944 PGLQGPAGPPGEKGEPGDDGPSGAEGPPGPQGLAGQRGIVGLPGQRGERGFPGLPGPSGE 1003 Query: 65 TSRVHCRAAEGGGLRPVPAVP--LPGPAGRSGGPGAWSAQKHGGHLSGRAGGTGRKTEGL 122 + A G P P P L GPAG G G+ A G G AG G + E Sbjct: 1004 PGKQGAPGASGDRGPPGPVGPPGLTGPAGEPGREGSPGADGPPGR-DGAAGVKGDRGETG 1062 Query: 123 ARAPGGAPG 131 A GAPG Sbjct: 1063 AVGAPGAPG 1071 Score = 30.8 bits (68), Expect = 0.76 Identities = 41/131 (31%), Positives = 49/131 (37%), Gaps = 26/131 (19%) Query: 12 PASWSAAGPPDGAGRPAEHEATGGASSLHIKCMEAASLLPRPPGKAP-PGAAKSTSRVHC 70 P AGP G P E +G A + A+ P PG+ PGA T R Sbjct: 518 PGQDGLAGPK---GAPGERGPSGLAGP------KGANGDPGRPGEPGLPGARGLTGR--- 565 Query: 71 RAAEGGGLRPVPAVPLPGPAGRSGGPGAWSAQKHGGHL--------SGRAGGTGRKTEGL 122 + G V PG GR G PG A+ G + +G G G K GL Sbjct: 566 -PGDAGPQGKVGPSGAPGEDGRPGPPGPQGARGQPGVMGFPGPKGANGEPGKAGEK--GL 622 Query: 123 ARAPG--GAPG 131 APG G PG Sbjct: 623 PGAPGLRGLPG 633 Score = 29.3 bits (64), Expect = 2.2 Identities = 32/123 (26%), Positives = 39/123 (31%), Gaps = 20/123 (16%) Query: 19 GPPDGAGRPAEHEATGGASSLHIKCMEAASLLPRPPGKAPPGAAKSTSRVHCRAAEGGGL 78 GPP AG P G P PG + P + + + G Sbjct: 210 GPPGPAGAPGPQGFQGNPGE------------PGEPGVSGPMGPRGPPGPPGKPGDDG-- 255 Query: 79 RPVPAVPLPGPAGRSGGPGAWSAQKHGG--HLSGRAGGTGRKTEGLARAPGGAPGHGLQG 136 PG AG G PG A+ G L G G G A+ GAPG + Sbjct: 256 ----EAGKPGKAGERGPPGPQGARGFPGTPGLPGVKGHRGYPGLDGAKGEAGAPGVKGES 311 Query: 137 GQP 139 G P Sbjct: 312 GSP 314 Score = 29.3 bits (64), Expect = 2.2 Identities = 32/125 (25%), Positives = 41/125 (32%), Gaps = 8/125 (6%) Query: 12 PASWSAAGPPDGAGRPAEHEATGGASSLHIKCMEAASLLPRPPGKAPPGAAKSTSRVHCR 71 P + GPP G P G + K S PPG+A + + Sbjct: 899 PGAAGRVGPPGSNGNPGPPGPPGPSGKDGPKGARGDS---GPPGRAGEPGLQGPAGPPGE 955 Query: 72 AAEGGGLRPVPAVPLPGPAGRSGGPGAWSAQKHGGH-----LSGRAGGTGRKTEGLARAP 126 E G P A PGP G +G G G L G +G G++ A Sbjct: 956 KGEPGDDGPSGAEGPPGPQGLAGQRGIVGLPGQRGERGFPGLPGPSGEPGKQGAPGASGD 1015 Query: 127 GGAPG 131 G PG Sbjct: 1016 RGPPG 1020 Score = 27.7 bits (60), Expect = 6.4 Identities = 27/72 (37%), Positives = 31/72 (43%), Gaps = 14/72 (19%) Query: 80 PVPAVPLPGPAGRSGGPGAWSAQKHGGHLSGRAGGT---------GRKTEGLARAPGGAP 130 P P P PGP G G G ++AQ GG +AGG G P GAP Sbjct: 161 PGPPGP-PGPPGPPGLGGNFAAQMAGG-FDEKAGGAQLGVMQGPMGPMGPRGPPGPAGAP 218 Query: 131 G-HGLQG--GQP 139 G G QG G+P Sbjct: 219 GPQGFQGNPGEP 230 >gi|111118974 collagen, type II, alpha 1 isoform 2 precursor [Homo sapiens] Length = 1418 Score = 45.4 bits (106), Expect = 3e-05 Identities = 44/147 (29%), Positives = 52/147 (35%), Gaps = 21/147 (14%) Query: 4 GVRSLVSTPASWSAAGPPDGAGRPAEHEATGGASSLHIKCMEAASLLPRPPGKA------ 57 GV+ +P + GP G P E TG A + + + PPG Sbjct: 237 GVKGESGSPGENGSPGPMGPRGLPGERGRTGPAGAAGARGNDGQPGPAGPPGPVGPAGGP 296 Query: 58 ----PPGAAKSTSRVHCRAAEGG-GLRPVPAVP-LPGPAGRSGGPGAWSAQKHGGHLSGR 111 PGA R EG G R P P PGPAG SG PG + G Sbjct: 297 GFPGAPGAKGEAGPTGARGPEGAQGPRGEPGTPGSPGPAGASGNPGT-------DGIPGA 349 Query: 112 AGGTGRKTEGLARAPGGAPGHGLQGGQ 138 G G G+A APG G G Q Sbjct: 350 KGSAG--APGIAGAPGFPGPRGPPGPQ 374 Score = 41.2 bits (95), Expect = 6e-04 Identities = 45/134 (33%), Positives = 47/134 (35%), Gaps = 11/134 (8%) Query: 4 GVRSLVSTPASWSAAGPPDGAGRPAEHEATGGASSLHIKCMEAASLLPRPPGKAPPGAAK 63 G+R L AAGPP AG PA GA LP PPG G Sbjct: 558 GLRGLPGKDGETGAAGPPGPAG-PAGERGEQGAPG-----PSGFQGLPGPPGPPGEGGKP 611 Query: 64 STSRVHCRAAEGGGLRPVPAVPLPGPAGRSGGPGAWSAQKHGGHLSGRAGGTGRK-TEGL 122 V A G + P P G G PGA Q G L G G G K G Sbjct: 612 GDQGVPGEAGAPGLVGPRGERGFP---GERGSPGAQGLQGPRG-LPGTPGTDGPKGASGP 667 Query: 123 ARAPGGAPGHGLQG 136 A PG GLQG Sbjct: 668 AGPPGAQGPPGLQG 681 Score = 41.2 bits (95), Expect = 6e-04 Identities = 44/136 (32%), Positives = 52/136 (38%), Gaps = 12/136 (8%) Query: 4 GVRSLVSTPASWSAAGPPDGAGRPAEHEATGGASSLHIKCMEAASLLPRPPGKAP--PGA 61 G R P AGPP G+P G A +A + P+ P AP G Sbjct: 753 GERGETGPPGPAGFAGPPGADGQPGAKGEQGEAGQKG----DAGAPGPQGPSGAPGPQGP 808 Query: 62 AKSTSRVHCRAAEGGGLRPVPAVPLPGPAGRSGGPGAWSAQKHGGHLSGRAGGTGRK-TE 120 T R A+G P A PG AGR G PG+ G G +G G K Sbjct: 809 TGVTGPKGARGAQG----PPGATGFPGAAGRVGPPGSNGNPGPPGP-PGPSGKDGPKGAR 863 Query: 121 GLARAPGGAPGHGLQG 136 G + PG A GLQG Sbjct: 864 GDSGPPGRAGEPGLQG 879 Score = 38.1 bits (87), Expect = 0.005 Identities = 41/134 (30%), Positives = 49/134 (36%), Gaps = 16/134 (11%) Query: 4 GVRSLVSTPASWSAAGPPDGAGRPAEHEATGGASSLHIKCMEAASLLPRPPG----KAPP 59 G R TP G G P A G A + +K + PG + P Sbjct: 204 GARGFPGTPG---LPGVKGHRGYPGLDGAKGEAGAPGVKGESGSPGENGSPGPMGPRGLP 260 Query: 60 GAAKSTSRVHCRAAEGGGLRPVPAVPLP--GPAGRSGGPGAWSAQKHGGHLSGRAGGTGR 117 G T A G +P PA P GPAG G PGA A+ G AG TG Sbjct: 261 GERGRTGPAGAAGARGNDGQPGPAGPPGPVGPAGGPGFPGAPGAK-------GEAGPTGA 313 Query: 118 KTEGLARAPGGAPG 131 + A+ P G PG Sbjct: 314 RGPEGAQGPRGEPG 327 Score = 36.6 bits (83), Expect = 0.014 Identities = 38/131 (29%), Positives = 48/131 (36%), Gaps = 11/131 (8%) Query: 19 GPPDGAGRPAEHEATGGASSLHIKCMEAASLLPRPPGK----APPGAAKSTSRVHCRAAE 74 GP G G P A G A + E A PG P GA+ + A+ Sbjct: 291 GPAGGPGFPGAPGAKGEAGPTGARGPEGAQGPRGEPGTPGSPGPAGASGNPGTDGIPGAK 350 Query: 75 GG----GLRPVPAVPLP-GPAGRSGGPGAWSAQKHGGH--LSGRAGGTGRKTEGLARAPG 127 G G+ P P P GP G G G + G ++G G G K E P Sbjct: 351 GSAGAPGIAGAPGFPGPRGPPGPQGATGPLGPKGQTGEPGIAGFKGEQGPKGEPGPAGPQ 410 Query: 128 GAPGHGLQGGQ 138 GAPG + G+ Sbjct: 411 GAPGPAGEEGK 421 Score = 35.4 bits (80), Expect = 0.031 Identities = 46/143 (32%), Positives = 51/143 (35%), Gaps = 17/143 (11%) Query: 4 GVRSLVSTPASWSAAGPPDGAGRPAEHEATGGASSLHIKCMEAASLLPRPPGKAPPGAAK 63 G R TP S GP +G P G S + A P P G PPG Sbjct: 321 GPRGEPGTPGS---PGPAGASGNPGTDGIPGAKGSAGAPGIAGAPGFPGPRG--PPGPQG 375 Query: 64 STSRVHCRAAEG-----GGLRPVPAVPLPGPAGRSGGPG-AWSAQKHGGHLSGRAGGTGR 117 +T + + G G PGPAG G PG A K G G GG G Sbjct: 376 ATGPLGPKGQTGEPGIAGFKGEQGPKGEPGPAGPQGAPGPAGEEGKRGAR--GEPGGVGP 433 Query: 118 -KTEGLARAPG--GAPGH-GLQG 136 G APG G PG GL G Sbjct: 434 IGPPGERGAPGNRGFPGQDGLAG 456 Score = 35.4 bits (80), Expect = 0.031 Identities = 37/138 (26%), Positives = 45/138 (32%), Gaps = 11/138 (7%) Query: 4 GVRSLVSTPASWSAAGPPDGAGRPAEHEATGGASSLHIKCMEAASLLPRPPGKAPPGAAK 63 G+ P GP G TG K + P P G P GA Sbjct: 357 GIAGAPGFPGPRGPPGPQGATGPLGPKGQTGEPGIAGFKGEQGPKGEPGPAG--PQGAPG 414 Query: 64 STSRVHCRAAEG--GGLRPVPAVPLPGPAGRSGGPGAWSAQKHGGHLSGRAGGTGRKTEG 121 R A G GG+ P+ GP G G PG G L+G G G + Sbjct: 415 PAGEEGKRGARGEPGGVGPI------GPPGERGAPGNRGFPGQDG-LAGPKGAPGERGPS 467 Query: 122 LARAPGGAPGHGLQGGQP 139 P GA G + G+P Sbjct: 468 GLAGPKGANGDPGRPGEP 485 Score = 35.0 bits (79), Expect = 0.040 Identities = 40/141 (28%), Positives = 46/141 (32%), Gaps = 28/141 (19%) Query: 17 AAGPPDGAGRPAEHEATGGASSLHIKCMEAASLLPRPPGK----------APPGAAKSTS 66 A GPP G P E A G A + PGK PPG A + Sbjct: 673 AQGPPGLQGMPGERGAAGIAGPKGDRGDVGEKGPEGAPGKDGGRGLTGPIGPPGPAGANG 732 Query: 67 RVHCRAAEG----GGLRPVPA----VPLPGPAGRSGGPGAWSAQKHGGHLSGRAGGTGRK 118 G G R P PGPAG +G PGA G+ G G + Sbjct: 733 EKGEVGPPGPAGSAGARGAPGERGETGPPGPAGFAGPPGA----------DGQPGAKGEQ 782 Query: 119 TEGLARAPGGAPGHGLQGGQP 139 E + GAPG G P Sbjct: 783 GEAGQKGDAGAPGPQGPSGAP 803 Score = 34.7 bits (78), Expect = 0.052 Identities = 36/129 (27%), Positives = 46/129 (35%), Gaps = 10/129 (7%) Query: 12 PASWSAAGPPDGAGRPAEHEATGGASSLHIKCMEAASLLPRPPGKAP-------PGAAKS 64 P AGPP G P + +G + + + PG+ PG + Sbjct: 875 PGLQGPAGPPGEKGEPGDDGPSGAEGPPGPQGLAGQRGIVGLPGQRGERGFPGLPGPSGE 934 Query: 65 TSRVHCRAAEGGGLRPVPAVP--LPGPAGRSGGPGAWSAQKHGGHLSGRAGGTGRKTEGL 122 + A G P P P L GPAG G G+ A G G AG G + E Sbjct: 935 PGKQGAPGASGDRGPPGPVGPPGLTGPAGEPGREGSPGADGPPGR-DGAAGVKGDRGETG 993 Query: 123 ARAPGGAPG 131 A GAPG Sbjct: 994 AVGAPGAPG 1002 Score = 30.8 bits (68), Expect = 0.76 Identities = 41/131 (31%), Positives = 49/131 (37%), Gaps = 26/131 (19%) Query: 12 PASWSAAGPPDGAGRPAEHEATGGASSLHIKCMEAASLLPRPPGKAP-PGAAKSTSRVHC 70 P AGP G P E +G A + A+ P PG+ PGA T R Sbjct: 449 PGQDGLAGPK---GAPGERGPSGLAGP------KGANGDPGRPGEPGLPGARGLTGR--- 496 Query: 71 RAAEGGGLRPVPAVPLPGPAGRSGGPGAWSAQKHGGHL--------SGRAGGTGRKTEGL 122 + G V PG GR G PG A+ G + +G G G K GL Sbjct: 497 -PGDAGPQGKVGPSGAPGEDGRPGPPGPQGARGQPGVMGFPGPKGANGEPGKAGEK--GL 553 Query: 123 ARAPG--GAPG 131 APG G PG Sbjct: 554 PGAPGLRGLPG 564 Score = 29.3 bits (64), Expect = 2.2 Identities = 32/123 (26%), Positives = 39/123 (31%), Gaps = 20/123 (16%) Query: 19 GPPDGAGRPAEHEATGGASSLHIKCMEAASLLPRPPGKAPPGAAKSTSRVHCRAAEGGGL 78 GPP AG P G P PG + P + + + G Sbjct: 141 GPPGPAGAPGPQGFQGNPGE------------PGEPGVSGPMGPRGPPGPPGKPGDDG-- 186 Query: 79 RPVPAVPLPGPAGRSGGPGAWSAQKHGG--HLSGRAGGTGRKTEGLARAPGGAPGHGLQG 136 PG AG G PG A+ G L G G G A+ GAPG + Sbjct: 187 ----EAGKPGKAGERGPPGPQGARGFPGTPGLPGVKGHRGYPGLDGAKGEAGAPGVKGES 242 Query: 137 GQP 139 G P Sbjct: 243 GSP 245 Score = 29.3 bits (64), Expect = 2.2 Identities = 32/125 (25%), Positives = 41/125 (32%), Gaps = 8/125 (6%) Query: 12 PASWSAAGPPDGAGRPAEHEATGGASSLHIKCMEAASLLPRPPGKAPPGAAKSTSRVHCR 71 P + GPP G P G + K S PPG+A + + Sbjct: 830 PGAAGRVGPPGSNGNPGPPGPPGPSGKDGPKGARGDS---GPPGRAGEPGLQGPAGPPGE 886 Query: 72 AAEGGGLRPVPAVPLPGPAGRSGGPGAWSAQKHGGH-----LSGRAGGTGRKTEGLARAP 126 E G P A PGP G +G G G L G +G G++ A Sbjct: 887 KGEPGDDGPSGAEGPPGPQGLAGQRGIVGLPGQRGERGFPGLPGPSGEPGKQGAPGASGD 946 Query: 127 GGAPG 131 G PG Sbjct: 947 RGPPG 951 Score = 27.7 bits (60), Expect = 6.4 Identities = 27/72 (37%), Positives = 31/72 (43%), Gaps = 14/72 (19%) Query: 80 PVPAVPLPGPAGRSGGPGAWSAQKHGGHLSGRAGGT---------GRKTEGLARAPGGAP 130 P P P PGP G G G ++AQ GG +AGG G P GAP Sbjct: 92 PGPPGP-PGPPGPPGLGGNFAAQMAGG-FDEKAGGAQLGVMQGPMGPMGPRGPPGPAGAP 149 Query: 131 G-HGLQG--GQP 139 G G QG G+P Sbjct: 150 GPQGFQGNPGEP 161 >gi|18105032 type X collagen alpha 1 precursor [Homo sapiens] Length = 680 Score = 44.7 bits (104), Expect = 5e-05 Identities = 41/121 (33%), Positives = 48/121 (39%), Gaps = 26/121 (21%) Query: 21 PDGAGRPAEHEATGGASSLHIKCMEAASLLPRPPGKAPPGAAKSTSRVHCRAAEGGGLRP 80 P+G G+P A G K + A + PPG PPG K Sbjct: 260 PEGIGKPGAAGAPGQPGIPGTKGLPGAPGIAGPPG--PPGFGK----------------- 300 Query: 81 VPAVP----LPGPAGRSGGPGAWSAQKHGGHLSGRAGGTGRKTEGLARAPGGAPG-HGLQ 135 P +P GPAG GGPGA Q G L G+ G TG + P G PG HGL Sbjct: 301 -PGLPGLKGERGPAGLPGGPGAKGEQGPAG-LPGKPGLTGPPGNMGPQGPKGIPGSHGLP 358 Query: 136 G 136 G Sbjct: 359 G 359 Score = 35.0 bits (79), Expect = 0.040 Identities = 42/148 (28%), Positives = 47/148 (31%), Gaps = 17/148 (11%) Query: 4 GVRSLVSTPASWSAAGPPDGAGRPA------EHEATGGASSLHIKCMEAASLLPR----- 52 G + L P GPP G G+P E G K + + LP Sbjct: 279 GTKGLPGAPGIAGPPGPP-GFGKPGLPGLKGERGPAGLPGGPGAKGEQGPAGLPGKPGLT 337 Query: 53 -PPGKAPPGAAKSTSRVHCRAAEGGGLRPVPAVPLPGPAGRSGGPGAWSAQKHGGHLSGR 111 PPG P K H G P PG G G PG S K G G+ Sbjct: 338 GPPGNMGPQGPKGIPGSHGLPGPKGETGPAGPAGYPGAKGERGSPG--SDGKPG--YPGK 393 Query: 112 AGGTGRKTEGLARAPGGAPGHGLQGGQP 139 G G K P G PG G G P Sbjct: 394 PGLDGPKGNPGLPGPKGDPGVGGPPGLP 421 Score = 28.1 bits (61), Expect = 4.9 Identities = 34/118 (28%), Positives = 42/118 (35%), Gaps = 17/118 (14%) Query: 19 GPPDGAGRPAEHEATG--GASSLHIKCMEAASLLPRPPGKAPPGAAKSTSRVHCRAAEGG 76 GPP AG +G G ++ LP PPG + G + + E G Sbjct: 63 GPPGPAGPRGHPGPSGPPGKPGYGSPGLQGEPGLPGPPGPSAVGKP-GVPGLPGKPGERG 121 Query: 77 GLRP---VPAVPLPGPAGRSGGPGAWSAQKHGGHLSGRAGGTGRKTEGLARAPGGAPG 131 P V LPGP G G PG G + G+ G G P GAPG Sbjct: 122 PYGPKGDVGPAGLPGPRGPPGPPGI--PGPAGISVPGKPGQQG---------PTGAPG 168 Score = 27.3 bits (59), Expect = 8.4 Identities = 20/52 (38%), Positives = 21/52 (40%), Gaps = 12/52 (23%) Query: 87 PGPAGRSGGPGAWSAQKHGGHLSGRAGGTGRKTEGLARAPG--GAPGHGLQG 136 PGPAG G PG SG G G + GL PG G PG G Sbjct: 65 PGPAGPRGHPGP----------SGPPGKPGYGSPGLQGEPGLPGPPGPSAVG 106 >gi|4826998 splicing factor proline/glutamine rich (polypyrimidine tract binding protein associated) [Homo sapiens] Length = 707 Score = 44.7 bits (104), Expect = 5e-05 Identities = 45/135 (33%), Positives = 50/135 (37%), Gaps = 27/135 (20%) Query: 12 PASWSAAGPPDGAGRPAEHEATGGASSLHIKCMEAASLLPRPPG---KAPPGAAKST--- 65 PA + PP + P T GA P PP APPGA T Sbjct: 117 PAPGVGSAPPASSSAPPATPPTSGAPP-----GSGPGPTPTPPPAVTSAPPGAPPPTPPS 171 Query: 66 SRVHCRAAEGGGLRPVPA-VPLPGPAGRSGGPGAWSAQKHGGHLSGRAGGTGRKTEGLAR 124 S V + GG P PA VP PGP G GPG GG G+ G + Sbjct: 172 SGVPTTPPQAGGPPPPPAAVPGPGP-GPKQGPGP------GGPKGGKMPGGPK------- 217 Query: 125 APGGAPGHGLQGGQP 139 PGG PG GG P Sbjct: 218 -PGGGPGLSTPGGHP 231 >gi|98985810 alpha 1 type XI collagen isoform B preproprotein [Homo sapiens] Length = 1818 Score = 44.3 bits (103), Expect = 7e-05 Identities = 42/130 (32%), Positives = 52/130 (40%), Gaps = 19/130 (14%) Query: 19 GPPDGAGRPAEHEATGGASSLHIKCMEAASLLPRPPGKAPPGAAKSTSRVHCRAAEGGGL 78 GPP G P E + G A + L RP + PPG A + +G Sbjct: 1063 GPPGPVGSPGERGSAGTAGPI--------GLPGRPGPQGPPGPAGEKGAPGEKGPQGPAG 1114 Query: 79 RPVPAVP--LPGPAGRSGGPGAWSAQKHGGHLSGRAGGTGRKTE-------GLARAPGGA 129 R P LPGPAG +G PG + G G+ G G K E GL + P GA Sbjct: 1115 RDGVQGPVGLPGPAGPAGSPGEDGDKGEIGE-PGQKGSKGDKGENGPPGPPGL-QGPVGA 1172 Query: 130 PGHGLQGGQP 139 PG G+P Sbjct: 1173 PGIAGGDGEP 1182 Score = 43.5 bits (101), Expect = 1e-04 Identities = 43/131 (32%), Positives = 52/131 (39%), Gaps = 23/131 (17%) Query: 17 AAGPPDGAGRPAEHEATGGASSLHIKCMEAASLLPRPPGKAPPGAAKSTSRVHCRAAEGG 76 AAGPP G P + G + P PPG+ PG A + +G Sbjct: 1301 AAGPPGAKGPPGDDGPKGNPGPVGFPGD------PGPPGE--PGPAGQDGVGGDKGEDGD 1352 Query: 77 GLRPVPAVPL-----PGPAGRSGGPGAWSAQKHGGHLSGRAGGTGRKTEGLARAPGGAPG 131 +P P P PGP G+ G PGA A+ GR G G K E A P G G Sbjct: 1353 PGQPGPPGPSGEAGPPGPPGKRGPPGAAGAE-------GRQGEKGAKGEAGAEGPPGKTG 1405 Query: 132 H-GLQG--GQP 139 G QG G+P Sbjct: 1406 PVGPQGPAGKP 1416 Score = 40.0 bits (92), Expect = 0.001 Identities = 40/133 (30%), Positives = 43/133 (32%), Gaps = 18/133 (13%) Query: 12 PASWSAAGPPDGAGRPAEHEATGGASSLHIKCMEAASLLPRPPGK-------APPGAAKS 64 P G P AG E G K E A P PPG PPG Sbjct: 1164 PGLQGPVGAPGIAGGDGEPGPRGQQGMFGQKGDEGARGFPGPPGPIGLQGLPGPPG---- 1219 Query: 65 TSRVHCRAAEGGGLRPVPAVPLPGPAGRSGGPGAWSAQKHGGHLSGRAGGTGRKTEGLAR 124 E G + P+ PGP G G GA Q G + G GG G K E Sbjct: 1220 ------EKGENGDVGPMGPPGPPGPRGPQGPNGADGPQGPPGSV-GSVGGVGEKGEPGEA 1272 Query: 125 APGGAPGHGLQGG 137 G PG GG Sbjct: 1273 GNPGPPGEAGVGG 1285 Score = 37.7 bits (86), Expect = 0.006 Identities = 44/138 (31%), Positives = 48/138 (34%), Gaps = 16/138 (11%) Query: 12 PASWSAAGPPDGAGRPAEHEATGGASSLHIKCMEAASLLPRPPGK----APPGAAKSTSR 67 P AGPP G+ A G K + + PPGK P G A Sbjct: 1359 PGPSGEAGPPGPPGKRGPPGAAGAEGRQGEKGAKGEAGAEGPPGKTGPVGPQGPAGKPGP 1418 Query: 68 VHCRAAEGGGLRPVPAVPLPGPAGRSGGPGAWSAQKHGGHLSGRAGGTGRKTE----GLA 123 R G PV LPG AG+ G PG G L G G G K GL Sbjct: 1419 EGLRGIPG----PVGEQGLPGAAGQDGPPGPMGPPGLPG-LKGDPGSKGEKGHPGLIGLI 1473 Query: 124 RAPG--GAPG-HGLQGGQ 138 PG G G GL G Q Sbjct: 1474 GPPGEQGEKGDRGLPGTQ 1491 Score = 32.7 bits (73), Expect = 0.20 Identities = 34/128 (26%), Positives = 40/128 (31%), Gaps = 4/128 (3%) Query: 12 PASWSAAGPPDGAGRPAEHEATGGASSLHIKCMEAASLLPRPPGKAPPGAAKSTSRVHCR 71 P GP G + G + K + P PPG+A G K Sbjct: 1236 PGPRGPQGPNGADGPQGPPGSVGSVGGVGEKGEPGEAGNPGPPGEAGVGGPKGERGEKGE 1295 Query: 72 AAEGGGLRPVPAVPLPGPAGRSGGPGAWSAQKHGGHLSGRAGGTGRKTEGLARAPGGAPG 131 A G P A PG G G PG G G G G+ G + G PG Sbjct: 1296 AGPPGAAGPPGAKGPPGDDGPKGNPGPVGFPGDPGP-PGEPGPAGQDGVGGDKGEDGDPG 1354 Query: 132 HGLQGGQP 139 Q G P Sbjct: 1355 ---QPGPP 1359 Score = 31.6 bits (70), Expect = 0.44 Identities = 22/56 (39%), Positives = 26/56 (46%), Gaps = 6/56 (10%) Query: 87 PGPAGRSGGPGAWSAQKHGGHLS--GRAGGTGRKTEGLARAPG--GAPGHGLQGGQ 138 PGP G+ G PG G + G G G+ GLA PG G PGH + GQ Sbjct: 699 PGPPGQQGNPGPQGLPGPQGPIGPPGEKGPQGK--PGLAGLPGADGPPGHPGKEGQ 752 Score = 30.4 bits (67), Expect = 0.99 Identities = 35/128 (27%), Positives = 40/128 (31%), Gaps = 25/128 (19%) Query: 4 GVRSLVSTPASWSAAGPPDGAGRPAEHEATGGASSLHIKCMEAASLLPRPPGKAPPGAAK 63 G R + P GP G TG + S PPG PPG Sbjct: 880 GARGVAGKPGPRGQRGPTGPRGSRGARGPTGKPGP------KGTSGGDGPPG--PPG--- 928 Query: 64 STSRVHCRAAEGGGLRPVPAVPLPGPAGRSGGPGAWSAQKHGGHLSGRAGGTGRKTEGLA 123 E G P V PGP G G PG H G+ G TG + + Sbjct: 929 ----------ERGPQGPQGPVGFPGPKGPPGPPGKDGLPGH----PGQRGETGFQGKTGP 974 Query: 124 RAPGGAPG 131 PGG G Sbjct: 975 PGPGGVVG 982 Score = 29.6 bits (65), Expect = 1.7 Identities = 34/123 (27%), Positives = 41/123 (33%), Gaps = 10/123 (8%) Query: 12 PASWSAAGPPDGAGRPAEHEATGGASSLHIKCMEAASLLPRPPGK-APPGAAKSTSRVHC 70 P + GPP G P G S K L PPG+ G Sbjct: 1434 PGAAGQDGPPGPMGPPGLPGLKGDPGSKGEKGHPGLIGLIGPPGEQGEKGDRGLPGTQGS 1493 Query: 71 RAAEGGGLRPVPAVPLPGPAGRSGGPGAWSAQKHGGHL--SGRAGGTGRKTEGLARAPGG 128 A+G G +PGPAG G PG G G G G+K + P G Sbjct: 1494 PGAKGDG-------GIPGPAGPLGPPGPPGLPGPQGPKGNKGSTGPAGQKGDSGLPGPPG 1546 Query: 129 APG 131 +PG Sbjct: 1547 SPG 1549 Score = 28.9 bits (63), Expect = 2.9 Identities = 32/138 (23%), Positives = 43/138 (31%), Gaps = 7/138 (5%) Query: 4 GVRSLVSTPASWSAAGPPDGAGRPAEHEATGGASSLHIKCMEAASLLPRPPGKAPPGAAK 63 G++ P GPP G P G ++ + + P + A Sbjct: 469 GLQGPTGPPGDPGDRGPPGRPGLPGADGLPGPPGTMLMLPFRYGGDGSKGPTISAQEAQA 528 Query: 64 STSRVHCRAAEGGGLRPVPAVPLPGPAGRSGGPGAWSAQKHGG-----HLSGRAGGTGRK 118 R A G P+ PGP G G GA G + G G TG+ Sbjct: 529 QAILQQARIALRGPPGPMGLTGRPGPVGGPGSSGAKGESGDPGPQGPRGVQGPPGPTGK- 587 Query: 119 TEGLARAPGGAPGHGLQG 136 G PG G G+ G Sbjct: 588 -PGKRGRPGADGGRGMPG 604 Score = 28.5 bits (62), Expect = 3.7 Identities = 40/143 (27%), Positives = 48/143 (33%), Gaps = 25/143 (17%) Query: 4 GVRSLVSTPASWSAAGPPDGAGRPAEHEATGGASSLHIKCMEAASLLPRPPGKA----PP 59 G + V P GPP G P H G + K PPG P Sbjct: 934 GPQGPVGFPGPKGPPGPPGKDGLPG-HPGQRGETGFQGKT--------GPPGPGGVVGPQ 984 Query: 60 GAAKSTSRVHCRAAEGGGLRPVPAVPLPGPAGRS---GGPGAWSAQKHGGHLSGRAGGTG 116 G T + R G P LPG AG+ G PG +SG+ G G Sbjct: 985 GPTGETGPIGERGHPGPP-GPPGEQGLPGAAGKEGAKGDPGPQG-------ISGKDGPAG 1036 Query: 117 -RKTEGLARAPGGAPGHGLQGGQ 138 R G PG GL+GG+ Sbjct: 1037 LRGFPGERGLPGAQGAPGLKGGE 1059 Score = 27.3 bits (59), Expect = 8.4 Identities = 24/85 (28%), Positives = 32/85 (37%), Gaps = 2/85 (2%) Query: 55 GKAPPGAAKSTSRVHCRAAEGGGLRPVPAVPLPGPAGRSGGPGAWSAQKHGGHLSGRAGG 114 G+ P +S + + G P PGP G+ G G A G + G G Sbjct: 550 GRPGPVGGPGSSGAKGESGDPGPQGPRGVQGPPGPTGKPGKRGRPGAD-GGRGMPGEPGA 608 Query: 115 TG-RKTEGLARAPGGAPGHGLQGGQ 138 G R +GL PG G +G Q Sbjct: 609 KGDRGFDGLPGLPGDKGHRGERGPQ 633 Score = 27.3 bits (59), Expect = 8.4 Identities = 30/92 (32%), Positives = 33/92 (35%), Gaps = 15/92 (16%) Query: 51 PRPPGKA----PPGAAKSTSRVHCRAAEGGGLRPVPAVPLPGPAGRSGGPGAWSAQKHGG 106 P PG A PPG + G P P LPGP G G PG Q G Sbjct: 675 PGQPGMAGVDGPPGPKGNMGPQGEPGPPGQQGNPGPQ-GLPGPQGPIGPPGEKGPQGKPG 733 Query: 107 HLSGRAGGTGRKTEGLARAPGGAPGHGLQGGQ 138 L+G G G P G PG Q G+ Sbjct: 734 -LAGLPGADG---------PPGHPGKEGQSGE 755 >gi|98985808 alpha 1 type XI collagen isoform C preproprotein [Homo sapiens] Length = 1767 Score = 44.3 bits (103), Expect = 7e-05 Identities = 42/130 (32%), Positives = 52/130 (40%), Gaps = 19/130 (14%) Query: 19 GPPDGAGRPAEHEATGGASSLHIKCMEAASLLPRPPGKAPPGAAKSTSRVHCRAAEGGGL 78 GPP G P E + G A + L RP + PPG A + +G Sbjct: 1012 GPPGPVGSPGERGSAGTAGPI--------GLPGRPGPQGPPGPAGEKGAPGEKGPQGPAG 1063 Query: 79 RPVPAVP--LPGPAGRSGGPGAWSAQKHGGHLSGRAGGTGRKTE-------GLARAPGGA 129 R P LPGPAG +G PG + G G+ G G K E GL + P GA Sbjct: 1064 RDGVQGPVGLPGPAGPAGSPGEDGDKGEIGE-PGQKGSKGDKGENGPPGPPGL-QGPVGA 1121 Query: 130 PGHGLQGGQP 139 PG G+P Sbjct: 1122 PGIAGGDGEP 1131 Score = 43.5 bits (101), Expect = 1e-04 Identities = 43/131 (32%), Positives = 52/131 (39%), Gaps = 23/131 (17%) Query: 17 AAGPPDGAGRPAEHEATGGASSLHIKCMEAASLLPRPPGKAPPGAAKSTSRVHCRAAEGG 76 AAGPP G P + G + P PPG+ PG A + +G Sbjct: 1250 AAGPPGAKGPPGDDGPKGNPGPVGFPGD------PGPPGE--PGPAGQDGVGGDKGEDGD 1301 Query: 77 GLRPVPAVPL-----PGPAGRSGGPGAWSAQKHGGHLSGRAGGTGRKTEGLARAPGGAPG 131 +P P P PGP G+ G PGA A+ GR G G K E A P G G Sbjct: 1302 PGQPGPPGPSGEAGPPGPPGKRGPPGAAGAE-------GRQGEKGAKGEAGAEGPPGKTG 1354 Query: 132 H-GLQG--GQP 139 G QG G+P Sbjct: 1355 PVGPQGPAGKP 1365 Score = 40.0 bits (92), Expect = 0.001 Identities = 40/133 (30%), Positives = 43/133 (32%), Gaps = 18/133 (13%) Query: 12 PASWSAAGPPDGAGRPAEHEATGGASSLHIKCMEAASLLPRPPGK-------APPGAAKS 64 P G P AG E G K E A P PPG PPG Sbjct: 1113 PGLQGPVGAPGIAGGDGEPGPRGQQGMFGQKGDEGARGFPGPPGPIGLQGLPGPPG---- 1168 Query: 65 TSRVHCRAAEGGGLRPVPAVPLPGPAGRSGGPGAWSAQKHGGHLSGRAGGTGRKTEGLAR 124 E G + P+ PGP G G GA Q G + G GG G K E Sbjct: 1169 ------EKGENGDVGPMGPPGPPGPRGPQGPNGADGPQGPPGSV-GSVGGVGEKGEPGEA 1221 Query: 125 APGGAPGHGLQGG 137 G PG GG Sbjct: 1222 GNPGPPGEAGVGG 1234 Score = 37.7 bits (86), Expect = 0.006 Identities = 44/138 (31%), Positives = 48/138 (34%), Gaps = 16/138 (11%) Query: 12 PASWSAAGPPDGAGRPAEHEATGGASSLHIKCMEAASLLPRPPGK----APPGAAKSTSR 67 P AGPP G+ A G K + + PPGK P G A Sbjct: 1308 PGPSGEAGPPGPPGKRGPPGAAGAEGRQGEKGAKGEAGAEGPPGKTGPVGPQGPAGKPGP 1367 Query: 68 VHCRAAEGGGLRPVPAVPLPGPAGRSGGPGAWSAQKHGGHLSGRAGGTGRKTE----GLA 123 R G PV LPG AG+ G PG G L G G G K GL Sbjct: 1368 EGLRGIPG----PVGEQGLPGAAGQDGPPGPMGPPGLPG-LKGDPGSKGEKGHPGLIGLI 1422 Query: 124 RAPG--GAPG-HGLQGGQ 138 PG G G GL G Q Sbjct: 1423 GPPGEQGEKGDRGLPGTQ 1440 Score = 32.7 bits (73), Expect = 0.20 Identities = 34/128 (26%), Positives = 40/128 (31%), Gaps = 4/128 (3%) Query: 12 PASWSAAGPPDGAGRPAEHEATGGASSLHIKCMEAASLLPRPPGKAPPGAAKSTSRVHCR 71 P GP G + G + K + P PPG+A G K Sbjct: 1185 PGPRGPQGPNGADGPQGPPGSVGSVGGVGEKGEPGEAGNPGPPGEAGVGGPKGERGEKGE 1244 Query: 72 AAEGGGLRPVPAVPLPGPAGRSGGPGAWSAQKHGGHLSGRAGGTGRKTEGLARAPGGAPG 131 A G P A PG G G PG G G G G+ G + G PG Sbjct: 1245 AGPPGAAGPPGAKGPPGDDGPKGNPGPVGFPGDPGP-PGEPGPAGQDGVGGDKGEDGDPG 1303 Query: 132 HGLQGGQP 139 Q G P Sbjct: 1304 ---QPGPP 1308 Score = 31.6 bits (70), Expect = 0.44 Identities = 22/56 (39%), Positives = 26/56 (46%), Gaps = 6/56 (10%) Query: 87 PGPAGRSGGPGAWSAQKHGGHLS--GRAGGTGRKTEGLARAPG--GAPGHGLQGGQ 138 PGP G+ G PG G + G G G+ GLA PG G PGH + GQ Sbjct: 648 PGPPGQQGNPGPQGLPGPQGPIGPPGEKGPQGK--PGLAGLPGADGPPGHPGKEGQ 701 Score = 30.4 bits (67), Expect = 0.99 Identities = 35/128 (27%), Positives = 40/128 (31%), Gaps = 25/128 (19%) Query: 4 GVRSLVSTPASWSAAGPPDGAGRPAEHEATGGASSLHIKCMEAASLLPRPPGKAPPGAAK 63 G R + P GP G TG + S PPG PPG Sbjct: 829 GARGVAGKPGPRGQRGPTGPRGSRGARGPTGKPGP------KGTSGGDGPPG--PPG--- 877 Query: 64 STSRVHCRAAEGGGLRPVPAVPLPGPAGRSGGPGAWSAQKHGGHLSGRAGGTGRKTEGLA 123 E G P V PGP G G PG H G+ G TG + + Sbjct: 878 ----------ERGPQGPQGPVGFPGPKGPPGPPGKDGLPGH----PGQRGETGFQGKTGP 923 Query: 124 RAPGGAPG 131 PGG G Sbjct: 924 PGPGGVVG 931 Score = 29.6 bits (65), Expect = 1.7 Identities = 34/123 (27%), Positives = 41/123 (33%), Gaps = 10/123 (8%) Query: 12 PASWSAAGPPDGAGRPAEHEATGGASSLHIKCMEAASLLPRPPGK-APPGAAKSTSRVHC 70 P + GPP G P G S K L PPG+ G Sbjct: 1383 PGAAGQDGPPGPMGPPGLPGLKGDPGSKGEKGHPGLIGLIGPPGEQGEKGDRGLPGTQGS 1442 Query: 71 RAAEGGGLRPVPAVPLPGPAGRSGGPGAWSAQKHGGHL--SGRAGGTGRKTEGLARAPGG 128 A+G G +PGPAG G PG G G G G+K + P G Sbjct: 1443 PGAKGDG-------GIPGPAGPLGPPGPPGLPGPQGPKGNKGSTGPAGQKGDSGLPGPPG 1495 Query: 129 APG 131 +PG Sbjct: 1496 SPG 1498 Score = 28.9 bits (63), Expect = 2.9 Identities = 32/138 (23%), Positives = 43/138 (31%), Gaps = 7/138 (5%) Query: 4 GVRSLVSTPASWSAAGPPDGAGRPAEHEATGGASSLHIKCMEAASLLPRPPGKAPPGAAK 63 G++ P GPP G P G ++ + + P + A Sbjct: 418 GLQGPTGPPGDPGDRGPPGRPGLPGADGLPGPPGTMLMLPFRYGGDGSKGPTISAQEAQA 477 Query: 64 STSRVHCRAAEGGGLRPVPAVPLPGPAGRSGGPGAWSAQKHGG-----HLSGRAGGTGRK 118 R A G P+ PGP G G GA G + G G TG+ Sbjct: 478 QAILQQARIALRGPPGPMGLTGRPGPVGGPGSSGAKGESGDPGPQGPRGVQGPPGPTGK- 536 Query: 119 TEGLARAPGGAPGHGLQG 136 G PG G G+ G Sbjct: 537 -PGKRGRPGADGGRGMPG 553 Score = 28.5 bits (62), Expect = 3.7 Identities = 40/143 (27%), Positives = 48/143 (33%), Gaps = 25/143 (17%) Query: 4 GVRSLVSTPASWSAAGPPDGAGRPAEHEATGGASSLHIKCMEAASLLPRPPGKA----PP 59 G + V P GPP G P H G + K PPG P Sbjct: 883 GPQGPVGFPGPKGPPGPPGKDGLPG-HPGQRGETGFQGKT--------GPPGPGGVVGPQ 933 Query: 60 GAAKSTSRVHCRAAEGGGLRPVPAVPLPGPAGRS---GGPGAWSAQKHGGHLSGRAGGTG 116 G T + R G P LPG AG+ G PG +SG+ G G Sbjct: 934 GPTGETGPIGERGHPGPP-GPPGEQGLPGAAGKEGAKGDPGPQG-------ISGKDGPAG 985 Query: 117 -RKTEGLARAPGGAPGHGLQGGQ 138 R G PG GL+GG+ Sbjct: 986 LRGFPGERGLPGAQGAPGLKGGE 1008 Score = 27.3 bits (59), Expect = 8.4 Identities = 24/85 (28%), Positives = 32/85 (37%), Gaps = 2/85 (2%) Query: 55 GKAPPGAAKSTSRVHCRAAEGGGLRPVPAVPLPGPAGRSGGPGAWSAQKHGGHLSGRAGG 114 G+ P +S + + G P PGP G+ G G A G + G G Sbjct: 499 GRPGPVGGPGSSGAKGESGDPGPQGPRGVQGPPGPTGKPGKRGRPGAD-GGRGMPGEPGA 557 Query: 115 TG-RKTEGLARAPGGAPGHGLQGGQ 138 G R +GL PG G +G Q Sbjct: 558 KGDRGFDGLPGLPGDKGHRGERGPQ 582 Score = 27.3 bits (59), Expect = 8.4 Identities = 30/92 (32%), Positives = 33/92 (35%), Gaps = 15/92 (16%) Query: 51 PRPPGKA----PPGAAKSTSRVHCRAAEGGGLRPVPAVPLPGPAGRSGGPGAWSAQKHGG 106 P PG A PPG + G P P LPGP G G PG Q G Sbjct: 624 PGQPGMAGVDGPPGPKGNMGPQGEPGPPGQQGNPGPQ-GLPGPQGPIGPPGEKGPQGKPG 682 Query: 107 HLSGRAGGTGRKTEGLARAPGGAPGHGLQGGQ 138 L+G G G P G PG Q G+ Sbjct: 683 -LAGLPGADG---------PPGHPGKEGQSGE 704 >gi|98985806 alpha 1 type XI collagen isoform A preproprotein [Homo sapiens] Length = 1806 Score = 44.3 bits (103), Expect = 7e-05 Identities = 42/130 (32%), Positives = 52/130 (40%), Gaps = 19/130 (14%) Query: 19 GPPDGAGRPAEHEATGGASSLHIKCMEAASLLPRPPGKAPPGAAKSTSRVHCRAAEGGGL 78 GPP G P E + G A + L RP + PPG A + +G Sbjct: 1051 GPPGPVGSPGERGSAGTAGPI--------GLPGRPGPQGPPGPAGEKGAPGEKGPQGPAG 1102 Query: 79 RPVPAVP--LPGPAGRSGGPGAWSAQKHGGHLSGRAGGTGRKTE-------GLARAPGGA 129 R P LPGPAG +G PG + G G+ G G K E GL + P GA Sbjct: 1103 RDGVQGPVGLPGPAGPAGSPGEDGDKGEIGE-PGQKGSKGDKGENGPPGPPGL-QGPVGA 1160 Query: 130 PGHGLQGGQP 139 PG G+P Sbjct: 1161 PGIAGGDGEP 1170 Score = 43.5 bits (101), Expect = 1e-04 Identities = 43/131 (32%), Positives = 52/131 (39%), Gaps = 23/131 (17%) Query: 17 AAGPPDGAGRPAEHEATGGASSLHIKCMEAASLLPRPPGKAPPGAAKSTSRVHCRAAEGG 76 AAGPP G P + G + P PPG+ PG A + +G Sbjct: 1289 AAGPPGAKGPPGDDGPKGNPGPVGFPGD------PGPPGE--PGPAGQDGVGGDKGEDGD 1340 Query: 77 GLRPVPAVPL-----PGPAGRSGGPGAWSAQKHGGHLSGRAGGTGRKTEGLARAPGGAPG 131 +P P P PGP G+ G PGA A+ GR G G K E A P G G Sbjct: 1341 PGQPGPPGPSGEAGPPGPPGKRGPPGAAGAE-------GRQGEKGAKGEAGAEGPPGKTG 1393 Query: 132 H-GLQG--GQP 139 G QG G+P Sbjct: 1394 PVGPQGPAGKP 1404 Score = 40.0 bits (92), Expect = 0.001 Identities = 40/133 (30%), Positives = 43/133 (32%), Gaps = 18/133 (13%) Query: 12 PASWSAAGPPDGAGRPAEHEATGGASSLHIKCMEAASLLPRPPGK-------APPGAAKS 64 P G P AG E G K E A P PPG PPG Sbjct: 1152 PGLQGPVGAPGIAGGDGEPGPRGQQGMFGQKGDEGARGFPGPPGPIGLQGLPGPPG---- 1207 Query: 65 TSRVHCRAAEGGGLRPVPAVPLPGPAGRSGGPGAWSAQKHGGHLSGRAGGTGRKTEGLAR 124 E G + P+ PGP G G GA Q G + G GG G K E Sbjct: 1208 ------EKGENGDVGPMGPPGPPGPRGPQGPNGADGPQGPPGSV-GSVGGVGEKGEPGEA 1260 Query: 125 APGGAPGHGLQGG 137 G PG GG Sbjct: 1261 GNPGPPGEAGVGG 1273 Score = 37.7 bits (86), Expect = 0.006 Identities = 44/138 (31%), Positives = 48/138 (34%), Gaps = 16/138 (11%) Query: 12 PASWSAAGPPDGAGRPAEHEATGGASSLHIKCMEAASLLPRPPGK----APPGAAKSTSR 67 P AGPP G+ A G K + + PPGK P G A Sbjct: 1347 PGPSGEAGPPGPPGKRGPPGAAGAEGRQGEKGAKGEAGAEGPPGKTGPVGPQGPAGKPGP 1406 Query: 68 VHCRAAEGGGLRPVPAVPLPGPAGRSGGPGAWSAQKHGGHLSGRAGGTGRKTE----GLA 123 R G PV LPG AG+ G PG G L G G G K GL Sbjct: 1407 EGLRGIPG----PVGEQGLPGAAGQDGPPGPMGPPGLPG-LKGDPGSKGEKGHPGLIGLI 1461 Query: 124 RAPG--GAPG-HGLQGGQ 138 PG G G GL G Q Sbjct: 1462 GPPGEQGEKGDRGLPGTQ 1479 Score = 32.7 bits (73), Expect = 0.20 Identities = 34/128 (26%), Positives = 40/128 (31%), Gaps = 4/128 (3%) Query: 12 PASWSAAGPPDGAGRPAEHEATGGASSLHIKCMEAASLLPRPPGKAPPGAAKSTSRVHCR 71 P GP G + G + K + P PPG+A G K Sbjct: 1224 PGPRGPQGPNGADGPQGPPGSVGSVGGVGEKGEPGEAGNPGPPGEAGVGGPKGERGEKGE 1283 Query: 72 AAEGGGLRPVPAVPLPGPAGRSGGPGAWSAQKHGGHLSGRAGGTGRKTEGLARAPGGAPG 131 A G P A PG G G PG G G G G+ G + G PG Sbjct: 1284 AGPPGAAGPPGAKGPPGDDGPKGNPGPVGFPGDPGP-PGEPGPAGQDGVGGDKGEDGDPG 1342 Query: 132 HGLQGGQP 139 Q G P Sbjct: 1343 ---QPGPP 1347 Score = 31.6 bits (70), Expect = 0.44 Identities = 22/56 (39%), Positives = 26/56 (46%), Gaps = 6/56 (10%) Query: 87 PGPAGRSGGPGAWSAQKHGGHLS--GRAGGTGRKTEGLARAPG--GAPGHGLQGGQ 138 PGP G+ G PG G + G G G+ GLA PG G PGH + GQ Sbjct: 687 PGPPGQQGNPGPQGLPGPQGPIGPPGEKGPQGK--PGLAGLPGADGPPGHPGKEGQ 740 Score = 30.4 bits (67), Expect = 0.99 Identities = 35/128 (27%), Positives = 40/128 (31%), Gaps = 25/128 (19%) Query: 4 GVRSLVSTPASWSAAGPPDGAGRPAEHEATGGASSLHIKCMEAASLLPRPPGKAPPGAAK 63 G R + P GP G TG + S PPG PPG Sbjct: 868 GARGVAGKPGPRGQRGPTGPRGSRGARGPTGKPGP------KGTSGGDGPPG--PPG--- 916 Query: 64 STSRVHCRAAEGGGLRPVPAVPLPGPAGRSGGPGAWSAQKHGGHLSGRAGGTGRKTEGLA 123 E G P V PGP G G PG H G+ G TG + + Sbjct: 917 ----------ERGPQGPQGPVGFPGPKGPPGPPGKDGLPGH----PGQRGETGFQGKTGP 962 Query: 124 RAPGGAPG 131 PGG G Sbjct: 963 PGPGGVVG 970 Score = 29.6 bits (65), Expect = 1.7 Identities = 34/123 (27%), Positives = 41/123 (33%), Gaps = 10/123 (8%) Query: 12 PASWSAAGPPDGAGRPAEHEATGGASSLHIKCMEAASLLPRPPGK-APPGAAKSTSRVHC 70 P + GPP G P G S K L PPG+ G Sbjct: 1422 PGAAGQDGPPGPMGPPGLPGLKGDPGSKGEKGHPGLIGLIGPPGEQGEKGDRGLPGTQGS 1481 Query: 71 RAAEGGGLRPVPAVPLPGPAGRSGGPGAWSAQKHGGHL--SGRAGGTGRKTEGLARAPGG 128 A+G G +PGPAG G PG G G G G+K + P G Sbjct: 1482 PGAKGDG-------GIPGPAGPLGPPGPPGLPGPQGPKGNKGSTGPAGQKGDSGLPGPPG 1534 Query: 129 APG 131 +PG Sbjct: 1535 SPG 1537 Score = 28.9 bits (63), Expect = 2.9 Identities = 32/138 (23%), Positives = 43/138 (31%), Gaps = 7/138 (5%) Query: 4 GVRSLVSTPASWSAAGPPDGAGRPAEHEATGGASSLHIKCMEAASLLPRPPGKAPPGAAK 63 G++ P GPP G P G ++ + + P + A Sbjct: 457 GLQGPTGPPGDPGDRGPPGRPGLPGADGLPGPPGTMLMLPFRYGGDGSKGPTISAQEAQA 516 Query: 64 STSRVHCRAAEGGGLRPVPAVPLPGPAGRSGGPGAWSAQKHGG-----HLSGRAGGTGRK 118 R A G P+ PGP G G GA G + G G TG+ Sbjct: 517 QAILQQARIALRGPPGPMGLTGRPGPVGGPGSSGAKGESGDPGPQGPRGVQGPPGPTGK- 575 Query: 119 TEGLARAPGGAPGHGLQG 136 G PG G G+ G Sbjct: 576 -PGKRGRPGADGGRGMPG 592 Score = 28.5 bits (62), Expect = 3.7 Identities = 40/143 (27%), Positives = 48/143 (33%), Gaps = 25/143 (17%) Query: 4 GVRSLVSTPASWSAAGPPDGAGRPAEHEATGGASSLHIKCMEAASLLPRPPGKA----PP 59 G + V P GPP G P H G + K PPG P Sbjct: 922 GPQGPVGFPGPKGPPGPPGKDGLPG-HPGQRGETGFQGKT--------GPPGPGGVVGPQ 972 Query: 60 GAAKSTSRVHCRAAEGGGLRPVPAVPLPGPAGRS---GGPGAWSAQKHGGHLSGRAGGTG 116 G T + R G P LPG AG+ G PG +SG+ G G Sbjct: 973 GPTGETGPIGERGHPGPP-GPPGEQGLPGAAGKEGAKGDPGPQG-------ISGKDGPAG 1024 Query: 117 -RKTEGLARAPGGAPGHGLQGGQ 138 R G PG GL+GG+ Sbjct: 1025 LRGFPGERGLPGAQGAPGLKGGE 1047 Score = 27.3 bits (59), Expect = 8.4 Identities = 24/85 (28%), Positives = 32/85 (37%), Gaps = 2/85 (2%) Query: 55 GKAPPGAAKSTSRVHCRAAEGGGLRPVPAVPLPGPAGRSGGPGAWSAQKHGGHLSGRAGG 114 G+ P +S + + G P PGP G+ G G A G + G G Sbjct: 538 GRPGPVGGPGSSGAKGESGDPGPQGPRGVQGPPGPTGKPGKRGRPGAD-GGRGMPGEPGA 596 Query: 115 TG-RKTEGLARAPGGAPGHGLQGGQ 138 G R +GL PG G +G Q Sbjct: 597 KGDRGFDGLPGLPGDKGHRGERGPQ 621 Score = 27.3 bits (59), Expect = 8.4 Identities = 30/92 (32%), Positives = 33/92 (35%), Gaps = 15/92 (16%) Query: 51 PRPPGKA----PPGAAKSTSRVHCRAAEGGGLRPVPAVPLPGPAGRSGGPGAWSAQKHGG 106 P PG A PPG + G P P LPGP G G PG Q G Sbjct: 663 PGQPGMAGVDGPPGPKGNMGPQGEPGPPGQQGNPGPQ-GLPGPQGPIGPPGEKGPQGKPG 721 Query: 107 HLSGRAGGTGRKTEGLARAPGGAPGHGLQGGQ 138 L+G G G P G PG Q G+ Sbjct: 722 -LAGLPGADG---------PPGHPGKEGQSGE 743 >gi|48762934 alpha 2 type I collagen [Homo sapiens] Length = 1366 Score = 44.3 bits (103), Expect = 7e-05 Identities = 38/121 (31%), Positives = 45/121 (37%), Gaps = 18/121 (14%) Query: 19 GPPDGAGRPAEHEATGGASSLHIKCMEAASLLPRPPGKAPPGAAKSTSRVHCRAAEGGGL 78 GPP GR E TG P PPG PPG + + + G G Sbjct: 45 GPPGPPGRDGEDGPTGPPGP------------PGPPG--PPGLGGNFAAQYDGKGVGLGP 90 Query: 79 RPVPAVPLPGPAGRSGGPGAWSAQKHGGHLSGRAGGTGRKTEGLARAPGGAPGHGLQGGQ 138 P+ + GP G +G PG Q G G G TG AR P G PG + G Sbjct: 91 GPMGLMGPRGPPGAAGAPGPQGFQGPAGE-PGEPGQTG---PAGARGPAGPPGKAGEDGH 146 Query: 139 P 139 P Sbjct: 147 P 147 Score = 42.0 bits (97), Expect = 3e-04 Identities = 46/160 (28%), Positives = 56/160 (35%), Gaps = 27/160 (16%) Query: 4 GVRSLVSTPASWSAAGPPDGAGRPAEHEATG-----------GASSLHIKCMEAASLLPR 52 G+R + P A G P G P ATG G + E + P Sbjct: 661 GLRGEIGNPGRDGARGAPGAVGAPGPAGATGDRGEAGAAGPAGPAGPRGSPGERGEVGPA 720 Query: 53 PPG--KAPPGAAKSTSRVHCRAAEG-----GGLRPVPAVPLPGPAGRSGGPGAWSAQKHG 105 P P GAA R A+G G + P V GPAG +G PG ++ G Sbjct: 721 GPNGFAGPAGAAGQPGAKGERGAKGPKGENGVVGPTGPVGAAGPAGPNGPPGPAGSRGDG 780 Query: 106 G-----HLSGRAGGTGRKTEGLARAPGGAPG----HGLQG 136 G G AG TG P G PG GL+G Sbjct: 781 GPPGMTGFPGAAGRTGPPGPSGISGPPGPPGPAGKEGLRG 820 Score = 41.6 bits (96), Expect = 4e-04 Identities = 42/147 (28%), Positives = 56/147 (38%), Gaps = 27/147 (18%) Query: 4 GVRSLVSTPASWSAAGP-----PDG-AGRPAEHEATGGASSLHIKCMEAASLLPRPPGKA 57 G ++ P S A+GP P+G AGRP E G LP PG Sbjct: 412 GRAGVMGPPGSRGASGPAGVRGPNGDAGRPGEPGLMGPRG------------LPGSPGNI 459 Query: 58 PPGAAKSTSRVHCRAAEGGGLRPVPA------VPLPGPAGRSGGPGAWSAQKHGGHLSGR 111 P + + G + P A + PGP G +G PG + H G L+G Sbjct: 460 GPAGKEGPVGLPGIDGRPGPIGPAGARGEPGNIGFPGPKGPTGDPGKNGDKGHAG-LAGA 518 Query: 112 AGGTGRKTEGLARAPGGAPGHGLQGGQ 138 G G A+ P G G+QGG+ Sbjct: 519 RGAPGPDGNNGAQGPPGP--QGVQGGK 543 Score = 38.9 bits (89), Expect = 0.003 Identities = 41/129 (31%), Positives = 50/129 (38%), Gaps = 12/129 (9%) Query: 4 GVRSLVSTPASWSAAGPPDGAGRPAEHEATGGASSLHIKCMEAASLLPRPPG-KAPPGAA 62 G R V P +GP G P + TG + + + A LP P G P GAA Sbjct: 280 GPRGEVGLPG---LSGPVGPPGNPGANGLTGAKGAAGLPGVAGAPGLPGPRGIPGPVGAA 336 Query: 63 KSTSRVHCRAAEGGGLRPVPAVPLPGPAGRSGGPGAWSAQKHGGHLSGRAGGTGRKTEGL 122 +T A G P PA G +G G PG+ Q G SG G G E Sbjct: 337 GAT------GARGLVGEPGPA-GSKGESGNKGEPGSAGPQGPPGP-SGEEGKRGPNGEAG 388 Query: 123 ARAPGGAPG 131 + P G PG Sbjct: 389 SAGPPGPPG 397 Score = 38.5 bits (88), Expect = 0.004 Identities = 42/136 (30%), Positives = 48/136 (35%), Gaps = 22/136 (16%) Query: 19 GPPDGAGRPAEHEATGGASSLHIKCMEAASLLPRPPG----KAPPG---AAKSTSRVHCR 71 GPP G P G + + LP P G + PPG AA T + R Sbjct: 550 GPPGFQGLPGPSGPAGEVGKPGERGLHGEFGLPGPAGPRGERGPPGESGAAGPTGPIGSR 609 Query: 72 AAEG--------GGLRPVPAVPLPGPAGRSGGPGAWSAQKHGGHLSGRAGGTGRKTEGLA 123 G G V AV GP+G SG PG A +G GG G K E Sbjct: 610 GPSGPPGPDGNKGEPGVVGAVGTAGPSGPSGLPGERGA-------AGIPGGKGEKGEPGL 662 Query: 124 RAPGGAPGHGLQGGQP 139 R G PG G P Sbjct: 663 RGEIGNPGRDGARGAP 678 Score = 36.2 bits (82), Expect = 0.018 Identities = 43/141 (30%), Positives = 49/141 (34%), Gaps = 20/141 (14%) Query: 4 GVRSLVSTPASWSAAGPPDGAGRPAEHEATG--GASSLHIKCMEAASLLPRPPGKAPPGA 61 GV V P AGPP G P + G GA A P PPG Sbjct: 886 GVAGAVGEPGPLGIAGPPGARGPPGAVGSPGVNGAPG-------EAGRDGNPGNDGPPGR 938 Query: 62 AKSTSRVHCRAAEGGGLRPVPAVPLPGPAGRSGGPGAWSAQKHGGHLSGRAGGTGRKTEG 121 R G + PV A PGP G G G KHG G G +G Sbjct: 939 DGQPGHKGERGYP-GNIGPVGAAGAPGPHGPVGPAG-----KHGNR--GETGPSGPVGPA 990 Query: 122 LARAPGGAPG-HGLQG--GQP 139 A P G G G++G G+P Sbjct: 991 GAVGPRGPSGPQGIRGDKGEP 1011 Score = 35.4 bits (80), Expect = 0.031 Identities = 41/132 (31%), Positives = 50/132 (37%), Gaps = 12/132 (9%) Query: 17 AAGPPDGAGRPA---EHEATGGASSLHIKCMEAASLLPRPPGKA-PPGAAKSTSRVHCRA 72 +AGPP G P E A G A LP G PPG + + Sbjct: 251 SAGPPGFPGAPGPKGEIGAVGNAGPAGPAGPRGEVGLPGLSGPVGPPGNPGANGLTGAKG 310 Query: 73 AEGGGLRPVPAVP-LPGPAGRSGGPGAWSAQKHGGHL-----SGRAGGTGRKTEGLARAP 126 A GL V P LPGP G G GA A G + +G G +G K E + P Sbjct: 311 A--AGLPGVAGAPGLPGPRGIPGPVGAAGATGARGLVGEPGPAGSKGESGNKGEPGSAGP 368 Query: 127 GGAPGHGLQGGQ 138 G PG + G+ Sbjct: 369 QGPPGPSGEEGK 380 Score = 34.3 bits (77), Expect = 0.068 Identities = 38/136 (27%), Positives = 45/136 (33%), Gaps = 31/136 (22%) Query: 19 GPPDGAGRPAEHEATGGASSLHIKCMEAASLLPRPPGKAPPGAAKSTSRVHCRAAEGGGL 78 GPP AG P G A P PG+ P A+ + +A E G Sbjct: 100 GPPGAAGAPGPQGFQGPAGE------------PGEPGQTGPAGARGPAGPPGKAGEDGH- 146 Query: 79 RPVPAVP-------LPGPAGRSGGPGA------WSAQKHGG--HLSGRAGGTGRKTEGLA 123 P P + GP G G PG + H G L G+ G G K E A Sbjct: 147 ---PGKPGRPGERGVVGPQGARGFPGTPGLPGFKGIRGHNGLDGLKGQPGAPGVKGEPGA 203 Query: 124 RAPGGAPGHGLQGGQP 139 G PG G P Sbjct: 204 PGENGTPGQTGARGLP 219 Score = 32.7 bits (73), Expect = 0.20 Identities = 41/129 (31%), Positives = 51/129 (39%), Gaps = 14/129 (10%) Query: 19 GPPDGAGRPAEHEATGGASSLHIKCMEAASLLPRPPG----KAPPGAAKSTSRVHCRAAE 74 GPP AG+ G + + E ++ PPG K P G A + + Sbjct: 808 GPPGPAGKEGLRGPRGDQGPVG-RTGEVGAV--GPPGFAGEKGPSGEAGTAGPPGTPGPQ 864 Query: 75 GGGLRPVPAV-PLPGPAGRSGGPGAWSAQKHGGHLSGRAGGTG-RKTEGLARAPG--GAP 130 G L P + LPG G G PG A G L G AG G R G +PG GAP Sbjct: 865 G--LLGAPGILGLPGSRGERGLPGVAGAVGEPGPL-GIAGPPGARGPPGAVGSPGVNGAP 921 Query: 131 GHGLQGGQP 139 G + G P Sbjct: 922 GEAGRDGNP 930 Score = 30.8 bits (68), Expect = 0.76 Identities = 42/146 (28%), Positives = 45/146 (30%), Gaps = 31/146 (21%) Query: 4 GVRSLVSTPASWSAAGPPDGAGRPAEHEATGGASSLHIKCMEAASLLPRPPG-------- 55 G R P G P GRP E G + A P PG Sbjct: 130 GARGPAGPPGKAGEDGHPGKPGRPGERGVVGP---------QGARGFPGTPGLPGFKGIR 180 Query: 56 --------KAPPGAAKSTSRVHCRAAEGGGLRPVPAVPLPGPAGRSGGPGAWSAQKHGGH 107 K PGA E G A LPG GR G PG A+ G Sbjct: 181 GHNGLDGLKGQPGAPGVKGEPGA-PGENGTPGQTGARGLPGERGRVGAPGPAGARGSDGS 239 Query: 108 LSGRAGGTGRKTEGLARAPG--GAPG 131 + G G G G A PG GAPG Sbjct: 240 V-GPVGPAG--PIGSAGPPGFPGAPG 262 >gi|110349772 alpha 1 type I collagen preproprotein [Homo sapiens] Length = 1464 Score = 43.1 bits (100), Expect = 1e-04 Identities = 45/145 (31%), Positives = 55/145 (37%), Gaps = 16/145 (11%) Query: 4 GVRSLVSTPASWSAAGPPDGAGRPAEHEATGGASSLHIKCMEAASLLPRPPGKA-PPGAA 62 G R P AGPP G+P G A + + + P P G A PPG Sbjct: 800 GDRGEPGPPGPAGFAGPPGADGQPGAKGEPGDAGA------KGDAGPPGPAGPAGPPGPI 853 Query: 63 KSTSRVHCRAAEGGGLRPVPAVPLPGPAGRSGGPGAWSAQKHGG--HLSGRAGGTGRKTE 120 + + A G P A PG AGR G PG G +G+ GG G + E Sbjct: 854 GNVGAPGAKGARGSA-GPPGATGFPGAAGRVGPPGPSGNAGPPGPPGPAGKEGGKGPRGE 912 Query: 121 -GLARAPG-----GAPGHGLQGGQP 139 G A PG G PG + G P Sbjct: 913 TGPAGRPGEVGPPGPPGPAGEKGSP 937 Score = 42.4 bits (98), Expect = 3e-04 Identities = 39/136 (28%), Positives = 53/136 (38%), Gaps = 9/136 (6%) Query: 4 GVRSLVSTPASWSAAGPPDGAGRPAEHEATGGASSLHIKCMEAASLLPRPPG-KAPPGAA 62 G+ P + +GP G P +G + K A P P G + PPG A Sbjct: 404 GIAGAPGFPGARGPSGPQGPGGPPGPKGNSGEPGAPGSKGDTGAKGEPGPVGVQGPPGPA 463 Query: 63 KSTSRVHCRAAEGGGLRPVPAVPLPGPAGRSGGPGAWSAQKHGGHLSGRAGGTGRKTEGL 122 + R A G P P LPGP G GGPG+ G ++G G G + Sbjct: 464 GEEGK---RGARG---EPGPT-GLPGPPGERGGPGSRGFPGADG-VAGPKGPAGERGSPG 515 Query: 123 ARAPGGAPGHGLQGGQ 138 P G+PG + G+ Sbjct: 516 PAGPKGSPGEAGRPGE 531 Score = 42.4 bits (98), Expect = 3e-04 Identities = 45/138 (32%), Positives = 52/138 (37%), Gaps = 18/138 (13%) Query: 19 GPPDGAGRPA---EHEATGGASSLHIKCMEAASLLPRPPGKA----PPGA---AKSTSRV 68 GPP AG P E +G A + P PPG A PPGA + Sbjct: 770 GPPGPAGAPGDKGESGPSGPAGPTGARGAPGDRGEPGPPGPAGFAGPPGADGQPGAKGEP 829 Query: 69 HCRAAEGGGLRPVPAVPL--PGPAGRSGGPGAWSAQKHGG-----HLSGRAGGTGRKTEG 121 A+G P PA P PGP G G PGA A+ G G AG G Sbjct: 830 GDAGAKGDAGPPGPAGPAGPPGPIGNVGAPGAKGARGSAGPPGATGFPGAAGRVGPPGPS 889 Query: 122 LARAPGGAPG-HGLQGGQ 138 P G PG G +GG+ Sbjct: 890 GNAGPPGPPGPAGKEGGK 907 Score = 40.8 bits (94), Expect = 7e-04 Identities = 43/142 (30%), Positives = 53/142 (37%), Gaps = 17/142 (11%) Query: 12 PASWSAAGPPDGAGRPAEHEATGGASSLHIKCMEAASLLPRPPGKAPP-------GAAKS 64 P G P GRP A G A + A+ P P G A P GA Sbjct: 298 PGQMGPRGLPGERGRPG---APGPAGARGNDGATGAAGPPGPTGPAGPPGFPGAVGAKGE 354 Query: 65 TSRVHCRAAEGG-GLRPVPAVPLP----GPAGRSGGPGAWSAQKHGGH--LSGRAGGTGR 117 R +EG G+R P P P GPAG G G A+ G ++G G G Sbjct: 355 AGPQGPRGSEGPQGVRGEPGPPGPAGAAGPAGNPGADGQPGAKGANGAPGIAGAPGFPGA 414 Query: 118 KTEGLARAPGGAPGHGLQGGQP 139 + + PGG PG G+P Sbjct: 415 RGPSGPQGPGGPPGPKGNSGEP 436 Score = 39.3 bits (90), Expect = 0.002 Identities = 45/151 (29%), Positives = 51/151 (33%), Gaps = 25/151 (16%) Query: 4 GVRSLVSTPASWSAAGPPD---GAGRPAEHEATGGASSLHIKCMEAASLLPRPPGKA--- 57 G + P AGPP G P A G A A+ PPG + Sbjct: 833 GAKGDAGPPGPAGPAGPPGPIGNVGAPGAKGARGSAGPPGATGFPGAAGRVGPPGPSGNA 892 Query: 58 ----PPGAAKSTSRVHCRAAEGGGLRPVPAVPL--PGPAGRSGGPGAWSAQKHGGHLSGR 111 PPG A R G RP P PGPAG G PGA G Sbjct: 893 GPPGPPGPAGKEGGKGPRGETGPAGRPGEVGPPGPPGPAGEKGSPGA----------DGP 942 Query: 112 AGGTGRK-TEGLARAPG--GAPGHGLQGGQP 139 AG G +G+A G G PG + G P Sbjct: 943 AGAPGTPGPQGIAGQRGVVGLPGQRGERGFP 973 Score = 37.0 bits (84), Expect = 0.011 Identities = 31/123 (25%), Positives = 39/123 (31%), Gaps = 7/123 (5%) Query: 17 AAGPPDGAGRPAEHEATGGASSLHIKCMEAASLLPRPPGKAPPGAAKSTSRVHCRAAEGG 76 A GP G P G + + P PG + + S G Sbjct: 939 ADGPAGAPGTPGPQGIAGQRGVVGLPGQRGERGFPGLPGPSGEPGKQGPSGASGERGPPG 998 Query: 77 GLRPVPAVPLPGPAGRSGGPGAWSAQKHGGHLSGRAGGTGRKTEGLARAPGGAPGHGLQG 136 + P PG +GR G PGA + GR G G K + P G PG Sbjct: 999 PMGPPGLAGPPGESGREGAPGAEGS-------PGRDGSPGAKGDRGETGPAGPPGAPGAP 1051 Query: 137 GQP 139 G P Sbjct: 1052 GAP 1054 Score = 36.2 bits (82), Expect = 0.018 Identities = 41/139 (29%), Positives = 45/139 (32%), Gaps = 9/139 (6%) Query: 4 GVRSLVSTPASWSAAGPPDGAGRPAEHEATGGASSLHIKCMEAASLLPRPPG-KAPPGAA 62 G R P GPP G P G K P P G K PG A Sbjct: 467 GKRGARGEPGPTGLPGPPGERGGPGSRGFPGADGVAGPKGPAGERGSPGPAGPKGSPGEA 526 Query: 63 KSTSRVHCRAAEG-----GGLRPVPAVPLPGPAGRSGGPGAWSAQKHGGHLSGRAGGTGR 117 A+G G P PGPAG+ G PG G +G G G Sbjct: 527 GRPGEAGLPGAKGLTGSPGSPGPDGKTGPPGPAGQDGRPGPPGPPGARGQ-AGVMGFPGP 585 Query: 118 KTEGLARAPGGAPGHGLQG 136 K G A PG A G+ G Sbjct: 586 K--GAAGEPGKAGERGVPG 602 Score = 35.4 bits (80), Expect = 0.031 Identities = 42/145 (28%), Positives = 49/145 (33%), Gaps = 29/145 (20%) Query: 11 TPASWSAAGPPDGAGRPAEHEATGGASSLHIKCMEAASLLPRPPGKA----------PPG 60 +P G P AGRP E G PPG A PPG Sbjct: 513 SPGPAGPKGSPGEAGRPGEAGLPGAKGLTGSPGSPGPDGKTGPPGPAGQDGRPGPPGPPG 572 Query: 61 AAKSTSRVHCRAAEGG-------GLRPVPAVP-LPGPAGRSGGPGAWSAQKHGGHLSGRA 112 A + +G G R VP P GPAG+ G GA G A Sbjct: 573 ARGQAGVMGFPGPKGAAGEPGKAGERGVPGPPGAVGPAGKDGEAGAQGP-------PGPA 625 Query: 113 GGTGRKTEGLARAPGGAPG-HGLQG 136 G G + E + P G+PG GL G Sbjct: 626 GPAGERGE---QGPAGSPGFQGLPG 647 Score = 34.7 bits (78), Expect = 0.052 Identities = 41/145 (28%), Positives = 46/145 (31%), Gaps = 24/145 (16%) Query: 2 HGGVRSLVSTPASWSAAGPPDGAGRPAEHEATGGASSLHIKCMEAASLLPR--PPGKAPP 59 H G L AGP G P E+ A G + PR P + P Sbjct: 267 HRGFSGLDGAKGDAGPAGPKGEPGSPGENGAPG-------------QMGPRGLPGERGRP 313 Query: 60 GAAKSTSRVHCRAAEGGGLRPVPAVPLPGPAGRSGGPGAWSAQKHGGHLSGRAGGTGRKT 119 GA A G P P GPAG G PGA A+ G R + Sbjct: 314 GAPGPAGARGNDGATGAAGPPGPT----GPAGPPGFPGAVGAKGEAGPQGPRGSEGPQGV 369 Query: 120 EGLARAPGGAPGHGLQG-----GQP 139 G PG A G G GQP Sbjct: 370 RGEPGPPGPAGAAGPAGNPGADGQP 394 Score = 33.9 bits (76), Expect = 0.089 Identities = 42/137 (30%), Positives = 47/137 (34%), Gaps = 24/137 (17%) Query: 4 GVRSLVSTPASWSAAGPPDGAGRPAEHEATGGASSLHIKCMEAASLLPR-PPGKAPPGAA 62 G R L P A GP G P E G + + PR PPG PPG Sbjct: 185 GPRGLPGPPG---APGPQGFQGPPGEPGEPGASGPMG----------PRGPPG--PPGKN 229 Query: 63 KSTSRVHCRAAEGGGLRPVPAVPLPGPAGRSGGPGAWSAQKHGGHLSGRAGGTGRKTEGL 122 G RP P PGP G G PG GH G +G G K + Sbjct: 230 GDDGEA------GKPGRPGERGP-PGPQGARGLPGTAGLPGMKGH-RGFSGLDGAKGDAG 281 Query: 123 ARAPGGAPGHGLQGGQP 139 P G PG + G P Sbjct: 282 PAGPKGEPGSPGENGAP 298 Score = 33.1 bits (74), Expect = 0.15 Identities = 40/146 (27%), Positives = 50/146 (34%), Gaps = 35/146 (23%) Query: 18 AGPPDGAGRPAEH------EATGGASSLHIKCMEAASLLPRPPGKAPPGAAKSTSRVHCR 71 AGPP AG+P E A G + + + + PPG A P A Sbjct: 649 AGPPGEAGKPGEQGVPGDLGAPGPSGARGERGFPGERGVQGPPGPAGPRGANGAPGNDGA 708 Query: 72 AAEGG-----------GLRPVP----AVPLPGPAGRSGGPGAWSAQKHGGH-----LSGR 111 + G GL+ +P A LPGP G G G A G L+G Sbjct: 709 KGDAGAPGAPGSQGAPGLQGMPGERGAAGLPGPKGDRGDAGPKGADGSPGKDGVRGLTGP 768 Query: 112 AGGTGRKTEGLARAPGGAPGHGLQGG 137 G G P GAPG + G Sbjct: 769 IGPPG---------PAGAPGDKGESG 785 Score = 33.1 bits (74), Expect = 0.15 Identities = 40/140 (28%), Positives = 45/140 (32%), Gaps = 33/140 (23%) Query: 4 GVRSLVSTPASWSAAGPPDGAGRPAEHEATGGASSLHIKCMEAASLLPRPPGK----APP 59 G + P + + G P G P E A G LP P G P Sbjct: 707 GAKGDAGAPGAPGSQGAPGLQGMPGERGAAG---------------LPGPKGDRGDAGPK 751 Query: 60 GAAKSTSRVHCRAAEGGGLRPVPAVPLPGPAGRSGGPGAWSAQKHGGHLSGRAGGTGRKT 119 GA S + R G P P PGPAG G G SG AG TG + Sbjct: 752 GADGSPGKDGVRGLTG------PIGP-PGPAGAPGDKGESGP-------SGPAGPTGARG 797 Query: 120 EGLARAPGGAPGHGLQGGQP 139 R G PG G P Sbjct: 798 APGDRGEPGPPGPAGFAGPP 817 Score = 32.7 bits (73), Expect = 0.20 Identities = 48/164 (29%), Positives = 55/164 (33%), Gaps = 41/164 (25%) Query: 4 GVRSLVSTPASWSA---AGPPDGAG---RPAEHEATGGASSLHIKCMEAASLLPRPPGKA 57 G + L +P S GPP AG RP G + PGKA Sbjct: 536 GAKGLTGSPGSPGPDGKTGPPGPAGQDGRPGPPGPPGARGQAGVMGFPGPKGAAGEPGKA 595 Query: 58 -------PPGAAKSTSRVHCRAAEGGGLRPVPAVP-----------------LPGPAGRS 93 PPGA + A+G P PA P LPGPAG Sbjct: 596 GERGVPGPPGAVGPAGKDGEAGAQGP---PGPAGPAGERGEQGPAGSPGFQGLPGPAGPP 652 Query: 94 GGPGAWSAQKHGGHLSGRAGGTGRKTEGLARAPGGAPG-HGLQG 136 G G Q G L G G +G AR G PG G+QG Sbjct: 653 GEAGKPGEQGVPGDL-GAPGPSG------ARGERGFPGERGVQG 689 Score = 28.5 bits (62), Expect = 3.7 Identities = 36/137 (26%), Positives = 47/137 (34%), Gaps = 42/137 (30%) Query: 21 PDGAGRPAEHEATGGASSLHIKCMEAASLLPRPPGKAPPGAAKSTSRVHCRAAEGGGLRP 80 PDG+ P + E TG + P G P + A G Sbjct: 96 PDGSESPTDQETTG---------------VEGPKGDTGPRGPRGP-------AGPPGRDG 133 Query: 81 VPAVP-LPGPAGRSGGPG--------------AWSAQKHGG-HLSGRAGGTGRKTEGLAR 124 +P P LPGP G G PG + + GG + G G +G + GL Sbjct: 134 IPGQPGLPGPPGPPGPPGPPGLGGNFAPQLSYGYDEKSTGGISVPGPMGPSGPR--GLPG 191 Query: 125 APGGAPGHGLQG--GQP 139 PG G QG G+P Sbjct: 192 PPGAPGPQGFQGPPGEP 208 Score = 28.5 bits (62), Expect = 3.7 Identities = 38/137 (27%), Positives = 43/137 (31%), Gaps = 11/137 (8%) Query: 4 GVRSLVSTPASWSAAGPPDGAGRPAEHEATGGASSLHIKCMEAASLLPRPPGKAPP--GA 61 G L P G P G P + G P PG P A Sbjct: 1001 GPPGLAGPPGESGREGAPGAEGSPGRDGSPGAKGDRGETGPAGPPGAPGAPGAPGPVGPA 1060 Query: 62 AKSTSRVHCR-AAEGGGLRPVPAVPLPGPAGRSGGPGAWSAQKHGGHLSGRAGGTGRKTE 120 KS R A G + PV A GP G G G Q G + G G +G Sbjct: 1061 GKSGDRGETGPAGPAGPVGPVGARGPAGPQGPRGDKGETGEQGDRG-IKGHRGFSG---- 1115 Query: 121 GLARAPGGAPGH-GLQG 136 + P G PG G QG Sbjct: 1116 --LQGPPGPPGSPGEQG 1130 Score = 28.1 bits (61), Expect = 4.9 Identities = 31/102 (30%), Positives = 38/102 (37%), Gaps = 19/102 (18%) Query: 2 HGGVRSLVSTPASWSAAGP--PDGAGRPAEHEATGGASSLHIKCMEAASLLPRPPGKAPP 59 H G L P + G P GA PA G++ K + + LP P G PP Sbjct: 1110 HRGFSGLQGPPGPPGSPGEQGPSGASGPAGPRGPPGSAGAPGK--DGLNGLPGPIG--PP 1165 Query: 60 GAAKSTSRVHCRAAEGGGLRPVPAVPLPGPAGRSGGPGAWSA 101 G R + G + P PGP G G PG SA Sbjct: 1166 GPRG-------RTGDAGPVGP------PGPPGPPGPPGPPSA 1194 >gi|89276751 alpha 1 type V collagen preproprotein [Homo sapiens] Length = 1838 Score = 42.7 bits (99), Expect = 2e-04 Identities = 44/124 (35%), Positives = 49/124 (39%), Gaps = 20/124 (16%) Query: 19 GPPDGAGRPAEHEATGGASSLHIKCMEAASLLPRPPGKAPPGAAKST-SRVHCRAAEGGG 77 GPP G P + G +L +K E PPG PPG A S R AA G Sbjct: 1051 GPPGLRGFPGDRGLPGPVGALGLKGNEG------PPG--PPGPAGSPGERGPAGAAGPIG 1102 Query: 78 L--RPVPAVPLPGPAGRSGGPGAWSAQKHGGH--------LSGRAGGTGRKTEGLARAPG 127 + RP P P PGPAG G PG Q G L G AG G E + Sbjct: 1103 IPGRPGPQGP-PGPAGEKGAPGEKGPQGPAGRDGLQGPVGLPGPAGPVGPPGEDGDKGEI 1161 Query: 128 GAPG 131 G PG Sbjct: 1162 GEPG 1165 Score = 41.2 bits (95), Expect = 6e-04 Identities = 40/123 (32%), Positives = 47/123 (38%), Gaps = 14/123 (11%) Query: 19 GPPDGAGRPAEHEATGGASSLHIKCMEAASLLPRPPGKAPPGAAKSTSRVHCRAAEGGGL 78 GPP AG P E G A + I RP + PPG A + +G Sbjct: 1081 GPPGPAGSPGERGPAGAAGPIGIP--------GRPGPQGPPGPAGEKGAPGEKGPQGPAG 1132 Query: 79 RP--VPAVPLPGPAGRSGGPGAWSAQKHGGHLSGRAGGTGRKTEGLARAPGGAPGHGLQG 136 R V LPGPAG G PG + G G+ G G K E + P G G Sbjct: 1133 RDGLQGPVGLPGPAGPVGPPGEDGDKGEIGE-PGQKGSKGDKGE---QGPPGPTGPQGPI 1188 Query: 137 GQP 139 GQP Sbjct: 1189 GQP 1191 Score = 38.1 bits (87), Expect = 0.005 Identities = 37/122 (30%), Positives = 39/122 (31%), Gaps = 18/122 (14%) Query: 19 GPPDGAGRPAEHEATGGASSLHIKCMEAASLLPRPPGKA-------PPGAAKSTSRVHCR 71 G P +G E G K E P PPG PPG T V Sbjct: 1189 GQPGPSGADGEPGPRGQQGLFGQKGDEGPRGFPGPPGPVGLQGLPGPPGEKGETGDVGQM 1248 Query: 72 AAEGGGLRPVPAVPLPGPAGRSGGPGAWSAQKHGGHLSGRAGGTGRKTEGLARAPGGAPG 131 G PGP G SG PGA Q G + G G G K E G PG Sbjct: 1249 GPPGP----------PGPRGPSGAPGADGPQGPPGGI-GNPGAVGEKGEPGEAGEPGLPG 1297 Query: 132 HG 133 G Sbjct: 1298 EG 1299 Score = 35.4 bits (80), Expect = 0.031 Identities = 47/159 (29%), Positives = 56/159 (35%), Gaps = 19/159 (11%) Query: 12 PASWSAAGPPDGAGRPAEHEATGGASSLHIKCMEAASLLPRPPG-------KAPPGAAKS 64 P S GPP G P G + K L PPG + PG S Sbjct: 1452 PGSPGPDGPPGPMGPPGLPGLKGDSGPKGEKGHPGLIGLIGPPGEQGEKGDRGLPGPQGS 1511 Query: 65 TSRVHCRAAEGGGLRPVPAVPLPGPAGRSGGPGAWSAQKHGGHLSGRAGGTGRKTEGLAR 124 + E G P + PGP G G PG A+ G +G TG K E Sbjct: 1512 SGP----KGEQGITGPSGPIGPPGPPGLPGPPGPKGAK-------GSSGPTGPKGEAGHP 1560 Query: 125 APGGAPGHGLQGGQPHCCLQADSRRILLLAEQALRAGLG 163 P G PG + QP +QA R + A Q L G G Sbjct: 1561 GPPGPPGPPGEVIQP-LPIQASRTRRNIDASQLLDDGNG 1598 Score = 33.5 bits (75), Expect = 0.12 Identities = 34/126 (26%), Positives = 44/126 (34%), Gaps = 9/126 (7%) Query: 18 AGPPDGAGRPAEHEATGGASSLHIKCMEAASLLPRPPGKAPPGAAKSTSRVHCRAAEGGG 77 +GPP G E G + L P G P + + + G Sbjct: 651 SGPPGPPGDDGERGDDGEVGPRGLPGEPGPRGLLGPKGPPGPPGPPGVTGMDGQPGPKGN 710 Query: 78 LRPVPAVPLPGPAGRSGGPGAWSAQKHGGHLS--GRAGGTGRKTEGLARAPG--GAPGHG 133 + P PGP G+ G PGA G + G G G+ GL PG G PGH Sbjct: 711 VGPQGE---PGPPGQQGNPGAQGLPGPQGAIGPPGEKGPLGK--PGLPGMPGADGPPGHP 765 Query: 134 LQGGQP 139 + G P Sbjct: 766 GKEGPP 771 Score = 32.0 bits (71), Expect = 0.34 Identities = 43/152 (28%), Positives = 49/152 (32%), Gaps = 20/152 (13%) Query: 4 GVRSLVSTPASWSAAGPPDGAGRPAEHEATGGASSLHIKCMEAASLLPRPPGK------- 56 G R P + GPP G G P G + P P G+ Sbjct: 1255 GPRGPSGAPGADGPQGPPGGIGNPGAVGEKGEPGEAGEPGLPGEGGPPGPKGERGEKGES 1314 Query: 57 APPGAAKSTSRVHCRAAEG--GGLRPV-----PAVP-LPGPAGRSGGPGAWSAQKHGGHL 108 P GAA +G G PV P P PGPAG+ G PG G Sbjct: 1315 GPSGAAGPPGPKGPPGDDGPKGSPGPVGFPGDPGPPGEPGPAGQDGPPGDKGDDGEPGQ- 1373 Query: 109 SGRAGGTGRK----TEGLARAPGGAPGHGLQG 136 +G G TG G PG A G QG Sbjct: 1374 TGSPGPTGEPGPSGPPGKRGPPGPAGPEGRQG 1405 Score = 31.6 bits (70), Expect = 0.44 Identities = 37/146 (25%), Positives = 47/146 (32%), Gaps = 23/146 (15%) Query: 4 GVRSLVSTPASWSAAGPPDGAGRPAEHEATGGASSLHIKCMEAASLLPRPPGKA-PPGAA 62 G + P GPP AG G ++ LP P G PPG Sbjct: 1096 GAAGPIGIPGRPGPQGPPGPAGEKGAPGEKGPQGPAGRDGLQGPVGLPGPAGPVGPPGED 1155 Query: 63 KSTSRVHCRAAEG-----------GGLRPVPAVPLPGPAGRSGGPGAWSAQKHGGHLSGR 111 + +G G P + PGP+G G PG G+ Sbjct: 1156 GDKGEIGEPGQKGSKGDKGEQGPPGPTGPQGPIGQPGPSGADGEPGP----------RGQ 1205 Query: 112 AGGTGRKTEGLARAPGGAPGH-GLQG 136 G G+K + R G PG GLQG Sbjct: 1206 QGLFGQKGDEGPRGFPGPPGPVGLQG 1231 Score = 30.0 bits (66), Expect = 1.3 Identities = 29/91 (31%), Positives = 32/91 (35%), Gaps = 19/91 (20%) Query: 53 PPGK-APPGAAKSTSRVHCRAAEG-----------GGLRPVPAVPLPGPAGRSGGPGAWS 100 PPGK PPG A R + A+G G + P A PGP G G PG Sbjct: 1388 PPGKRGPPGPAGPEGRQGEKGAKGEAGLEGPPGKTGPIGPQGAPGKPGPDGLRGIPGPVG 1447 Query: 101 AQKHGGHLSGRAGGTGRKTEGLARAPGGAPG 131 Q G G G P G PG Sbjct: 1448 EQ-------GLPGSPGPDGPPGPMGPPGLPG 1471 Score = 28.1 bits (61), Expect = 4.9 Identities = 22/55 (40%), Positives = 25/55 (45%), Gaps = 4/55 (7%) Query: 87 PGPAGRSGGPGAWSAQKHGGHLSGRAGGTG-RKTEGLARAPG--GAPGHGLQGGQ 138 PGP G SGG G G +G G TG +G PG G PGH Q G+ Sbjct: 930 PGPKGNSGGDGPAGPPGERGP-NGPQGPTGFPGPKGPPGPPGKDGLPGHPGQRGE 983 >gi|25777671 protein phosphatase 1, regulatory subunit 10 [Homo sapiens] Length = 940 Score = 41.6 bits (96), Expect = 4e-04 Identities = 37/125 (29%), Positives = 47/125 (37%), Gaps = 22/125 (17%) Query: 16 SAAGPPDGAGRPAEHEATGGASSLHIKCMEAASLLPRPPGKAPPGAAKSTSRVHCRAAEG 75 S GPP+G G P GG P + P G ++S G Sbjct: 730 SGGGPPNGRGGPGGGMVGGGG---------------HRPHEGPGGGMGNSSGHRPHEGPG 774 Query: 76 GGLRPVPAVPLPGPAGRSGGPGAWSAQKHGGHLSGRAGGTGRKTEGLARAPGGAPGHGLQ 135 GG+ P GP G GG G + H G G +GG+G + PGG G G Sbjct: 775 GGMGSGHR-PHEGPGGSMGGGG--GHRPHEGPGGGISGGSGHRPH---EGPGGGMGAG-G 827 Query: 136 GGQPH 140 G +PH Sbjct: 828 GHRPH 832 Score = 32.7 bits (73), Expect = 0.20 Identities = 23/70 (32%), Positives = 28/70 (40%), Gaps = 6/70 (8%) Query: 71 RAAEGGGLRPVPAVPLPGPAGRSGGPGAWSAQKHGGHLSGRAGGTGRKTEGLARAPGGAP 130 R GG P P P G G G G + + GG G GG G + PGG Sbjct: 707 RGGRGGNEPPPPPPPFRGARGGRSGGGPPNGR--GGPGGGMVGGGGHRPH---EGPGGGM 761 Query: 131 GHGLQGGQPH 140 G+ G +PH Sbjct: 762 GNS-SGHRPH 770 >gi|110832843 TBP-associated factor 4 [Homo sapiens] Length = 1085 Score = 41.6 bits (96), Expect = 4e-04 Identities = 42/129 (32%), Positives = 50/129 (38%), Gaps = 14/129 (10%) Query: 7 SLVSTPASWSAAGPP-DGAGRPAEHEATGGASSLHIKCMEAASLLPRPPGK--APPGAAK 63 +++ TP AA PP A P A ++ A + L RPPG PP AA Sbjct: 236 TVIQTPPFVGAAAPPAPAAPSPPAAPAPAAPAAAPPPPPPAPATLARPPGHPAGPPTAAP 295 Query: 64 STSRVHCRAAEGG--GLRPVPAVPLPGPAGRSGGPGAWSAQKHGGHLSGRAGGTGRKTEG 121 + A GG G P PA GPAG SG PG +A A G K E Sbjct: 296 AVPPP-AAAQNGGSAGAAPAPAPAAGGPAGVSGQPGPGAA--------AAAPAPGVKAES 346 Query: 122 LARAPGGAP 130 R AP Sbjct: 347 PKRVVQAAP 355 Score = 35.0 bits (79), Expect = 0.040 Identities = 27/80 (33%), Positives = 33/80 (41%), Gaps = 7/80 (8%) Query: 20 PPDGAGRPAEHEATGGASSLHIKCMEAASLLPRPPGKAPPGAAKSTSRVHCRAAEGGGLR 79 PP RP + G + + AA+ + P AP G AK A G G Sbjct: 121 PPAAKLRPPPEGSAGSCAPV-----PAAAAVAAGPEPAPAGPAKPAGPAALAARAGPGPG 175 Query: 80 PVPAVPLPGPA-GRSGGPGA 98 P P P PGP G+ GPGA Sbjct: 176 PGPG-PGPGPGPGKPAGPGA 194 Score = 31.6 bits (70), Expect = 0.44 Identities = 59/222 (26%), Positives = 77/222 (34%), Gaps = 45/222 (20%) Query: 12 PASWSAAGPPDGAGRPAEHEAT----GGASSLHIKCMEA----------ASLLPRP---- 53 P GP G G+PA A G A+ L+ A A+LLP P Sbjct: 174 PGPGPGPGPGPGPGKPAGPGAAQTLNGSAALLNSHHAAAPAVSLVNNGPAALLPLPKPAA 233 Query: 54 PG-----------KAPPG-AAKSTSRVHCRAAEGGGLRPVPAVP--LPGPAGRSGGP--G 97 PG APP AA S AA P P P L P G GP Sbjct: 234 PGTVIQTPPFVGAAAPPAPAAPSPPAAPAPAAPAAAPPPPPPAPATLARPPGHPAGPPTA 293 Query: 98 AWSAQKHGGHLSGRAGGTGRKTEGLARAPGGA---PGHGLQGGQPHCCLQADS-RRILLL 153 A + +G + G A P G PG G P ++A+S +R++ Sbjct: 294 APAVPPPAAAQNGGSAGAAPAPAPAAGGPAGVSGQPGPGAAAAAPAPGVKAESPKRVVQA 353 Query: 154 AEQALR--AGLGARPSALDLVLSCAASVPFIHTALGRPRRCP 193 A A + A G +A +V+ P + AL P P Sbjct: 354 APPAAQTLAASGPASTAASMVIG-----PTMQGALPSPAAVP 390 Score = 31.2 bits (69), Expect = 0.58 Identities = 30/82 (36%), Positives = 34/82 (41%), Gaps = 23/82 (28%) Query: 52 RPPGKAPPGAAKSTSRVHCRAAEGGGLRPVPAVPLPGPAGRSGGPGAWSAQKHGGHLSGR 111 RPP P G+A S + V AA G P PA GPA + GP A L+ R Sbjct: 127 RPP---PEGSAGSCAPVPAAAAVAAGPEPAPA----GPA-KPAGPAA---------LAAR 169 Query: 112 AGGTGRKTEGLARAPGGAPGHG 133 AG G PG PG G Sbjct: 170 AG------PGPGPGPGPGPGPG 185 >gi|110735435 collagen, type V, alpha 3 preproprotein [Homo sapiens] Length = 1745 Score = 41.6 bits (96), Expect = 4e-04 Identities = 34/115 (29%), Positives = 39/115 (33%), Gaps = 13/115 (11%) Query: 17 AAGPPDGAGRPAEHEATGGASSLHIKCMEAASLLPRPPGKAPPGAAKSTSRVHCRAAEGG 76 AAGPP G P E A G + PG P S + E G Sbjct: 1239 AAGPPGKKGPPGEDGAKGSVGPTGL------------PGDLGPPGDPGVSGIDGSPGEKG 1286 Query: 77 GLRPVPAVPLPGPAGRSGGPGAWSAQKHGGHLSGRAGGTGRKTEGLARAPGGAPG 131 V PG +G G PG + GH+ GR G G K P G PG Sbjct: 1287 DPGDVGGPGPPGASGEPGAPGPPGKRGPSGHM-GREGREGEKGAKGEPGPDGPPG 1340 Score = 35.8 bits (81), Expect = 0.023 Identities = 42/147 (28%), Positives = 50/147 (34%), Gaps = 26/147 (17%) Query: 11 TPASWSAAGPPDGAGRPAEHEATGGASSLHIKCMEAASLLPRPPGK----------APPG 60 +P GP G G P + + G K P P GK PPG Sbjct: 1008 SPGERGPLGPAGGIGLPGQSGSEGPVGPAGKKGSRGERGPPGPTGKDGIPGPLGPLGPPG 1067 Query: 61 AAKSTSRVHCRAAEG-----------GGLRPVPAVPLPGPAGRSGGPGAWSAQKHGG--H 107 AA + + G G P + GPAG G PGA AQ G Sbjct: 1068 AAGPSGEEGDKGDVGAPGHKGSKGDKGDAGPPGQPGIRGPAGHPGPPGADGAQGRRGPPG 1127 Query: 108 LSGRAGGTG-RKTEGLARAPG--GAPG 131 L G+ G G R G+ PG G PG Sbjct: 1128 LFGQKGDDGVRGFVGVIGPPGLQGLPG 1154 Score = 34.7 bits (78), Expect = 0.052 Identities = 32/121 (26%), Positives = 40/121 (33%), Gaps = 2/121 (1%) Query: 19 GPPDGAGRPAEHEATGGASSLHIKCMEAASLLPRPPGKAPPGAAKSTSRVHCRAAEGGGL 78 GP G P E G A + + + P GK + + G L Sbjct: 1001 GPVGANGSPGERGPLGPAGGIGLPGQSGSEGPVGPAGKKGSRGERGPPGPTGKDGIPGPL 1060 Query: 79 RPVPAVPLPGPAGRSGGPGAWSAQKHGGHLSGRAGGTGRKTEGLARAPGGAPG-HGLQGG 137 P+ GP+G G G A H G G G G + R P G PG G G Sbjct: 1061 GPLGPPGAAGPSGEEGDKGDVGAPGHKGS-KGDKGDAGPPGQPGIRGPAGHPGPPGADGA 1119 Query: 138 Q 138 Q Sbjct: 1120 Q 1120 Score = 32.3 bits (72), Expect = 0.26 Identities = 19/53 (35%), Positives = 24/53 (45%), Gaps = 1/53 (1%) Query: 87 PGPAGRSGGPGAWSAQKHGGHLSGRAGGTGRKTEGLARAPGGAPGHGLQGGQP 139 PGP G +G PG H G L G G G + + P G PG + G+P Sbjct: 481 PGPVGLTGRPGPVGLPGHPG-LKGEEGAEGPQGPRGLQGPHGPPGRVGKMGRP 532 Score = 31.6 bits (70), Expect = 0.44 Identities = 34/113 (30%), Positives = 39/113 (34%), Gaps = 16/113 (14%) Query: 19 GPPDGAGRPAEHEATGGASSLHIKCMEAASLLPRPPGKAPPGAAKSTSRVHCRAAEGGGL 78 GPP AG TG L + PPG P + + R G L Sbjct: 911 GPPGPAGVLGPQGKTGEVGPLGER---------GPPGPPGPPGEQGLPGLEGREGAKGEL 961 Query: 79 RPVPAVPLPGPAGRSGGPGAWSAQKHGGHLSGRAGGTGRKTEGLARAPGGAPG 131 P + GPAG G PG GG G G TG K + P GA G Sbjct: 962 GPPGPLGKEGPAGLRGFPG-----PKGG--PGDPGPTGLKGDKGPPGPVGANG 1007 Score = 31.6 bits (70), Expect = 0.44 Identities = 43/149 (28%), Positives = 51/149 (34%), Gaps = 36/149 (24%) Query: 9 VSTPASWSAAGPPDGAGRPAEHEATGGASSLHIKCMEAASLLPRPPGKAPPGAAKSTSRV 68 V P A+G P G P + +G + + A P P G PPG T + Sbjct: 1291 VGGPGPPGASGEPGAPGPPGKRGPSGHMGREGREGEKGAKGEPGPDG--PPGR---TGPM 1345 Query: 69 HCRAAEGG----GLRPVPA-------------VPLPGPAGRSGGPGAWSAQKHGGHLSGR 111 R G GLR +P + PGP G SG PG L G Sbjct: 1346 GARGPPGRVGPEGLRGIPGPVGEPGLLGAPGQMGPPGPLGPSGLPG----------LKGD 1395 Query: 112 AGGTGRKTE----GLARAPGGAPGHGLQG 136 G G K GL PG A G QG Sbjct: 1396 TGPKGEKGHIGLIGLIGPPGEAGEKGDQG 1424 Score = 30.0 bits (66), Expect = 1.3 Identities = 36/125 (28%), Positives = 39/125 (31%), Gaps = 24/125 (19%) Query: 19 GPPDGAGRPAEHEATGGASSLHIKCMEAASLLPRPPGK-APPGAAKSTSRVHCRAAEGGG 77 GPP G P G + K S PPGK PPG E G Sbjct: 1214 GPPGAPGIP------GPKGDIGEKGDSGPSGAAGPPGKKGPPG-------------EDGA 1254 Query: 78 LRPVPAVPLPGPAGRSGGPGAWSAQKHGGHLS--GRAGGTGRKTEGLARAPGGAPGHGLQ 135 V LPG G G PG G G GG G G + PG G + Sbjct: 1255 KGSVGPTGLPGDLGPPGDPGVSGIDGSPGEKGDPGDVGGPG--PPGASGEPGAPGPPGKR 1312 Query: 136 GGQPH 140 G H Sbjct: 1313 GPSGH 1317 Score = 28.1 bits (61), Expect = 4.9 Identities = 29/96 (30%), Positives = 39/96 (40%), Gaps = 4/96 (4%) Query: 53 PPGK-APPGAAKSTSRVHCRAAEGGGLRPVPAVPLPGPAGRSGGPGAWSAQKHGGHLSGR 111 PPG+ PPG + +G P P PG G G PG+ H GH G Sbjct: 633 PPGEPGPPGQQGNHGSQGLPGPQGLIGTPGEKGP-PGNPGIPGLPGSDGPLGHPGH-EGP 690 Query: 112 AGGTGRKTEGLARAPGGAPG-HGLQGGQPHCCLQAD 146 G G + + P G PG G++G + LQ + Sbjct: 691 TGEKGAQGPPGSAGPPGYPGPRGVKGTSGNRGLQGE 726 Score = 28.1 bits (61), Expect = 4.9 Identities = 35/118 (29%), Positives = 41/118 (34%), Gaps = 20/118 (16%) Query: 19 GPPDGAGRPAEHEATGGASSLHIKCMEAASLLPRPPGKAPPGAAKSTSRVHCRAAEGGGL 78 GPP G P E G ++ E A PPG P G +GG Sbjct: 935 GPPGPPGPPGEQGLPG------LEGREGAKGELGPPG--PLGKEGPAGLRGFPGPKGGPG 986 Query: 79 RPVPA-----VPLPGPAGRSGGPGAWSAQKHGGHLSGRAGGTGRKTEGLARAPGGAPG 131 P P PGP G +G PG G L G AGG G + + P G G Sbjct: 987 DPGPTGLKGDKGPPGPVGANGSPG------ERGPL-GPAGGIGLPGQSGSEGPVGPAG 1037 Score = 27.7 bits (60), Expect = 6.4 Identities = 34/125 (27%), Positives = 41/125 (32%), Gaps = 3/125 (2%) Query: 16 SAAGPPDGAGRPAEHEATGGASSLHIKCMEAASLLPRPPG-KAPPGAAKSTSRVHCRAAE 74 S GPP G G +K E A P G + P G ++ A+ Sbjct: 476 SMKGPPGPVGLTGRPGPVGLPGHPGLKGEEGAEGPQGPRGLQGPHGPPGRVGKMGRPGAD 535 Query: 75 GGGLRPVPAVPLPGPAGRSGGPGAWSAQKHGGHLSGRAGGTGRKTEGLARAPGGAPGHGL 134 G P P G G G PG + G G G G E R G PG Sbjct: 536 GARGLPGDTGP-KGDRGFDGLPGLPGEKGQRGDF-GHVGQPGPPGEDGERGAEGPPGPTG 593 Query: 135 QGGQP 139 Q G+P Sbjct: 594 QAGEP 598 Score = 27.3 bits (59), Expect = 8.4 Identities = 22/61 (36%), Positives = 25/61 (40%), Gaps = 8/61 (13%) Query: 87 PGPAGRSGGPGAWSAQKHGGHLS--GRAGGTGRK-TEGLARAPG-----GAPGHGLQGGQ 138 PG G G PGA G + G G G K GL PG G PGH + G+ Sbjct: 835 PGSRGERGQPGATGQPGPKGDVGQDGAPGIPGEKGLPGLQGPPGFPGPKGPPGHQGKDGR 894 Query: 139 P 139 P Sbjct: 895 P 895 >gi|239753839 PREDICTED: hypothetical protein [Homo sapiens] Length = 257 Score = 41.2 bits (95), Expect = 6e-04 Identities = 46/144 (31%), Positives = 57/144 (39%), Gaps = 11/144 (7%) Query: 2 HGGVRSLVSTPASWSAAGPPDGAGRPAEHEATGGASSLHIKCMEAASLLPRPPGKAPPGA 61 H G + PA +A GPP A R A A A+ R P AP A Sbjct: 68 HPGAGGPLCFPARSAAWGPPARASRAAGRRAGPAGPPCRAPGRGRAAATRRSP--APGTA 125 Query: 62 AKSTSRVH----CRAAEGGGLRPVPAVPLPGP-AGRSGGPGAWSAQKHGGHLSGRAGGTG 116 S + V AA G R VPA LP P G S G G+ + ++ G R+ + Sbjct: 126 RGSPAGVERAGGATAASSAGTRSVPARRLPPPCGGTSLGAGSRALRRPGSAALPRSPSSS 185 Query: 117 RKTEGLARAPG-GAPGHGLQGGQP 139 R+ A PG GAP G G P Sbjct: 186 RR---WAAMPGPGAPRPGAPGTWP 206 >gi|119508426 alpha 3 type IX collagen [Homo sapiens] Length = 684 Score = 41.2 bits (95), Expect = 6e-04 Identities = 40/134 (29%), Positives = 48/134 (35%), Gaps = 20/134 (14%) Query: 4 GVRSLVSTPASWSAAGPPDGAGRPAEHEATGGASSLHIKCMEAASLLPRPPGKAPPGAAK 63 G + L P +GPP G G +G LP PPG PPG Sbjct: 115 GGKGLPGPPGEAGVSGPPGGIGLRGPPGPSGLPG------------LPGPPG--PPGPPG 160 Query: 64 STSRVHCRAAEGGGLRPVPAVPLPGPAGRSGGPGAWSAQKHGGHLSGRAGGTGRKTEGLA 123 + EG P++ PGP G G PG + G G G G K + Sbjct: 161 HPGVL----PEGATDLQCPSICPPGPPGPPGMPGFKGPTGYKGE-QGEVGKDGEKGDPGP 215 Query: 124 RAPGGAPGH-GLQG 136 P G PG GLQG Sbjct: 216 PGPAGLPGSVGLQG 229 Score = 33.1 bits (74), Expect = 0.15 Identities = 28/84 (33%), Positives = 33/84 (39%), Gaps = 5/84 (5%) Query: 50 LPRPPGKAPPGAAKSTSRVHCRAAEGGGLRPVPAVPLPGPAGRSGGPGAWSAQKHGG--H 107 +P PGKA + R +G RP P PG AG SG PG G Sbjct: 257 IPGAPGKAGDRGERGPEGF--RGPKGDLGRPGPK-GTPGVAGPSGEPGMPGKDGQNGVPG 313 Query: 108 LSGRAGGTGRKTEGLARAPGGAPG 131 L G+ G GR + P G PG Sbjct: 314 LDGQKGEAGRNGAPGEKGPNGLPG 337 Score = 32.7 bits (73), Expect = 0.20 Identities = 28/90 (31%), Positives = 29/90 (32%), Gaps = 10/90 (11%) Query: 50 LPRPPGKAPPGAAKSTSRVHCRAAEGGGLRPVPAVPLPGPAGRSGGPGAWSAQKHGGHLS 109 LP PPG P + A G LPGP G G PG G L Sbjct: 30 LPGPPGPPGPPGKPGQDGIDGEAGPPG---------LPGPPGPKGAPGKPGKPGEAG-LP 79 Query: 110 GRAGGTGRKTEGLARAPGGAPGHGLQGGQP 139 G G G P GAPG G P Sbjct: 80 GLPGVDGLTGRDGPPGPKGAPGERGSLGPP 109 Score = 30.4 bits (67), Expect = 0.99 Identities = 31/88 (35%), Positives = 35/88 (39%), Gaps = 17/88 (19%) Query: 50 LPRPPGKAPPGAAKSTSRVHCRAAEGGGLRPVPAVPLPGPAGRSGGPGAWSAQKHGGHLS 109 LP PG+A +K RA E G P +PG AG G G GH Sbjct: 335 LPGLPGRA---GSKGEKGERGRAGELGEAGPSGEPGVPGDAGMPGERG------EAGH-R 384 Query: 110 GRAGGTGRKTEGLARAPGGAPG-HGLQG 136 G AG G + P GAPG G QG Sbjct: 385 GSAGALG------PQGPPGAPGVRGFQG 406 Score = 28.1 bits (61), Expect = 4.9 Identities = 20/58 (34%), Positives = 23/58 (39%), Gaps = 8/58 (13%) Query: 87 PGPAGRSGGPGAWSAQKHGGHL--------SGRAGGTGRKTEGLARAPGGAPGHGLQG 136 PGPAG G PG + H G +G G G + R GA G GL G Sbjct: 556 PGPAGPPGPPGPPGSIGHPGARGPPGYRGPTGELGDPGPRGNQGDRGDKGAAGAGLDG 613 >gi|148536823 type IV alpha 6 collagen isoform A precursor [Homo sapiens] Length = 1691 Score = 40.4 bits (93), Expect = 0.001 Identities = 40/151 (26%), Positives = 52/151 (34%), Gaps = 28/151 (18%) Query: 4 GVRSLVSTPASWSAAGPPDGAGRPAEHEATGGASSLHIKCMEAASLLPRPPGK-APPGAA 62 GV L + A GP G + + G +++ + LP PPG PP Sbjct: 386 GVPGLPALSGVPGALGPQGFPGLKGD-QGNPGRTTIGAAGLPGRDGLPGPPGPPGPPSPE 444 Query: 63 KSTSRVHCRAAEGGGLRPVPA----------------------VPLPGPAGRSGGPGAWS 100 T +H + + GLR VP GP G G PG W Sbjct: 445 FETETLHNKESGFPGLRGEQGPKGNLGLKGIKGDSGFCACDGGVPNTGPPGEPGPPGPWG 504 Query: 101 AQKHGGHLSGRAGGTGRKTEGLARAPGGAPG 131 L G G G + G A+ P GAPG Sbjct: 505 LI----GLPGLKGARGDRGSGGAQGPAGAPG 531 Score = 35.0 bits (79), Expect = 0.040 Identities = 42/150 (28%), Positives = 55/150 (36%), Gaps = 18/150 (12%) Query: 4 GVRSLVSTPASWSAAGPPDGAGRPAEHEATGGASSLHIKC-MEAASLLPRPPGKAPPGAA 62 G R L P S GP AG P E G + I S L K G+A Sbjct: 918 GTRGLKGIPGSTGKMGPSGRAGTPGEKGDRGNPGPVGIPSPRRPMSNLWLKGDKGSQGSA 977 Query: 63 KSTSRVHCRAAEGGGLRP----VPAVP-----LPGPAGRSGGPGAWSAQKHGGHLSGRAG 113 S R +G RP +P P + G +G+ G PG + G L G +G Sbjct: 978 GSNGFPGPRGDKGEAGRPGPPGLPGAPGLPGIIKGVSGKPGPPGFMGIRGLPG-LKGSSG 1036 Query: 114 GTG-------RKTEGLARAPGGAPGHGLQG 136 TG ++G+ +PG GL G Sbjct: 1037 ITGFPGMPGESGSQGIRGSPGLPGASGLPG 1066 Score = 29.3 bits (64), Expect = 2.2 Identities = 39/137 (28%), Positives = 43/137 (31%), Gaps = 8/137 (5%) Query: 8 LVSTPASWSAAGPPDGAGRPAEHEATGGASSLHIKCMEAASLLPRPPGKAPPGAAKSTSR 67 L P AG G P G L + P PG T Sbjct: 1125 LPGAPGFPGVAGMRGEPGLPGSSGHQGAIGPLGSPGLIGPKGFPGFPGLHGLNGLPGTKG 1184 Query: 68 VHCRAAEGGGLRPVPA-VPLPGPAGRSGGPGAWSAQKHGGHLSGRAGGTG-RKTEGLARA 125 H G + VP LPGP G G PG L G+ G G +G A Sbjct: 1185 TH--GTPGPSITGVPGPAGLPGPKGEKGYPGIGIGAPGKPGLRGQKGDRGFPGLQGPAGL 1242 Query: 126 PGGAPGHGLQ---GGQP 139 P GAPG L GQP Sbjct: 1243 P-GAPGISLPSLIAGQP 1258 Score = 28.1 bits (61), Expect = 4.9 Identities = 40/146 (27%), Positives = 49/146 (33%), Gaps = 33/146 (22%) Query: 4 GVRSLVSTPASWSAAGPPDGAGRPAEHEATG--GASSLH-----IKCMEAASLLPRPPGK 56 G + TP GPP G P G G+S L EA + P P G Sbjct: 1328 GEPGFMGTPGK---VGPPGDPGFPGMKGKAGPRGSSGLQGDPGQTPTAEAVQVPPGPLGL 1384 Query: 57 APPGAAKSTSRVHCRAAEGG----GLRPVPAVP-------LPGPAGRSGGPGAWSAQKHG 105 PG A+G G + +P +P LPGP G G PG Sbjct: 1385 --PGIDGIPGLTGDPGAQGPVGLQGSKGLPGIPGKDGPSGLPGPPGALGDPG-------- 1434 Query: 106 GHLSGRAGGTGRKTEGLARAPGGAPG 131 L G G G + + P G PG Sbjct: 1435 --LPGLQGPPGFEGAPGQQGPFGMPG 1458 Score = 27.3 bits (59), Expect = 8.4 Identities = 23/58 (39%), Positives = 26/58 (44%), Gaps = 5/58 (8%) Query: 87 PGPAGRSGGPGAWSAQKHGGH--LSGRAGGTGRKTEGLARAPGGAPGH-GLQG--GQP 139 PGPAG G PG S Q G G G G K + G PG GL+G G+P Sbjct: 1273 PGPAGPPGPPGPSSNQGDTGDPGFPGIPGPKGPKGDQGIPGFSGLPGELGLKGMRGEP 1330 >gi|16357503 type IV alpha 6 collagen isoform B precursor [Homo sapiens] Length = 1690 Score = 40.4 bits (93), Expect = 0.001 Identities = 40/151 (26%), Positives = 52/151 (34%), Gaps = 28/151 (18%) Query: 4 GVRSLVSTPASWSAAGPPDGAGRPAEHEATGGASSLHIKCMEAASLLPRPPGK-APPGAA 62 GV L + A GP G + + G +++ + LP PPG PP Sbjct: 385 GVPGLPALSGVPGALGPQGFPGLKGD-QGNPGRTTIGAAGLPGRDGLPGPPGPPGPPSPE 443 Query: 63 KSTSRVHCRAAEGGGLRPVPA----------------------VPLPGPAGRSGGPGAWS 100 T +H + + GLR VP GP G G PG W Sbjct: 444 FETETLHNKESGFPGLRGEQGPKGNLGLKGIKGDSGFCACDGGVPNTGPPGEPGPPGPWG 503 Query: 101 AQKHGGHLSGRAGGTGRKTEGLARAPGGAPG 131 L G G G + G A+ P GAPG Sbjct: 504 LI----GLPGLKGARGDRGSGGAQGPAGAPG 530 Score = 35.0 bits (79), Expect = 0.040 Identities = 42/150 (28%), Positives = 55/150 (36%), Gaps = 18/150 (12%) Query: 4 GVRSLVSTPASWSAAGPPDGAGRPAEHEATGGASSLHIKC-MEAASLLPRPPGKAPPGAA 62 G R L P S GP AG P E G + I S L K G+A Sbjct: 917 GTRGLKGIPGSTGKMGPSGRAGTPGEKGDRGNPGPVGIPSPRRPMSNLWLKGDKGSQGSA 976 Query: 63 KSTSRVHCRAAEGGGLRP----VPAVP-----LPGPAGRSGGPGAWSAQKHGGHLSGRAG 113 S R +G RP +P P + G +G+ G PG + G L G +G Sbjct: 977 GSNGFPGPRGDKGEAGRPGPPGLPGAPGLPGIIKGVSGKPGPPGFMGIRGLPG-LKGSSG 1035 Query: 114 GTG-------RKTEGLARAPGGAPGHGLQG 136 TG ++G+ +PG GL G Sbjct: 1036 ITGFPGMPGESGSQGIRGSPGLPGASGLPG 1065 Score = 29.3 bits (64), Expect = 2.2 Identities = 39/137 (28%), Positives = 43/137 (31%), Gaps = 8/137 (5%) Query: 8 LVSTPASWSAAGPPDGAGRPAEHEATGGASSLHIKCMEAASLLPRPPGKAPPGAAKSTSR 67 L P AG G P G L + P PG T Sbjct: 1124 LPGAPGFPGVAGMRGEPGLPGSSGHQGAIGPLGSPGLIGPKGFPGFPGLHGLNGLPGTKG 1183 Query: 68 VHCRAAEGGGLRPVPA-VPLPGPAGRSGGPGAWSAQKHGGHLSGRAGGTG-RKTEGLARA 125 H G + VP LPGP G G PG L G+ G G +G A Sbjct: 1184 TH--GTPGPSITGVPGPAGLPGPKGEKGYPGIGIGAPGKPGLRGQKGDRGFPGLQGPAGL 1241 Query: 126 PGGAPGHGLQ---GGQP 139 P GAPG L GQP Sbjct: 1242 P-GAPGISLPSLIAGQP 1257 Score = 28.1 bits (61), Expect = 4.9 Identities = 40/146 (27%), Positives = 49/146 (33%), Gaps = 33/146 (22%) Query: 4 GVRSLVSTPASWSAAGPPDGAGRPAEHEATG--GASSLH-----IKCMEAASLLPRPPGK 56 G + TP GPP G P G G+S L EA + P P G Sbjct: 1327 GEPGFMGTPGK---VGPPGDPGFPGMKGKAGPRGSSGLQGDPGQTPTAEAVQVPPGPLGL 1383 Query: 57 APPGAAKSTSRVHCRAAEGG----GLRPVPAVP-------LPGPAGRSGGPGAWSAQKHG 105 PG A+G G + +P +P LPGP G G PG Sbjct: 1384 --PGIDGIPGLTGDPGAQGPVGLQGSKGLPGIPGKDGPSGLPGPPGALGDPG-------- 1433 Query: 106 GHLSGRAGGTGRKTEGLARAPGGAPG 131 L G G G + + P G PG Sbjct: 1434 --LPGLQGPPGFEGAPGQQGPFGMPG 1457 Score = 27.3 bits (59), Expect = 8.4 Identities = 23/58 (39%), Positives = 26/58 (44%), Gaps = 5/58 (8%) Query: 87 PGPAGRSGGPGAWSAQKHGGH--LSGRAGGTGRKTEGLARAPGGAPGH-GLQG--GQP 139 PGPAG G PG S Q G G G G K + G PG GL+G G+P Sbjct: 1272 PGPAGPPGPPGPSSNQGDTGDPGFPGIPGPKGPKGDQGIPGFSGLPGELGLKGMRGEP 1329 >gi|206597445 alpha 1 type XVIII collagen isoform 3 precursor [Homo sapiens] Length = 1751 Score = 40.0 bits (92), Expect = 0.001 Identities = 41/141 (29%), Positives = 50/141 (35%), Gaps = 24/141 (17%) Query: 19 GPPDGAGRPAEHEAT------GGASSLHIKCMEAASLLPRPPGK-APPGAAKSTSRVHCR 71 GPP G H+ G ++ + P PPG PG R Sbjct: 867 GPPGPPGPSFRHDKLTFIDMEGSGFGGDLEALRGPRGFPGPPGPPGVPGLPGEPGRFGVN 926 Query: 72 AAEGGGLRPVPAVP-------------LPGPAGRSGGPGAWSAQKHGGHLSGRAGGTGRK 118 +++ G +P VP PGP GR G PG + QK G L G AG G K Sbjct: 927 SSDVPGPAGLPGVPGREGPPGFPGLPGPPGPPGREGPPGR-TGQK--GSL-GEAGAPGHK 982 Query: 119 TEGLARAPGGAPGHGLQGGQP 139 A P GA G G P Sbjct: 983 GSKGAPGPAGARGESGLAGAP 1003 Score = 33.5 bits (75), Expect = 0.12 Identities = 34/103 (33%), Positives = 43/103 (41%), Gaps = 19/103 (18%) Query: 50 LPRPPGKA-PPGAA--KSTSRVHCRAAE----GGGLRPVPAVP-LPGPAGRSGGPGAWSA 101 +P PPG+A PPG+ + C + G L+ VP PGP GR G PG Sbjct: 762 VPGPPGRAGPPGSPCLPGPPGLPCPVSPLGPAGPALQTVPGPQGPPGPPGRDGTPGRDGE 821 Query: 102 QKHGGHLSGRAGGTGRKTEGLARAPG--------GAPGHGLQG 136 G G+ G TG +G PG G PG G +G Sbjct: 822 PGDPGE-DGKPGDTG--PQGFPGTPGDVGPKGDKGDPGVGERG 861 Score = 28.5 bits (62), Expect = 3.7 Identities = 30/118 (25%), Positives = 40/118 (33%), Gaps = 4/118 (3%) Query: 22 DGAGRPAEHEATGGASSLHIKCMEAASLLPRPPGKAPPGAAKSTSRVHCRAAEGGGLRPV 81 DG G+P G + + S+L P + PG A A G L Sbjct: 1110 DGVGQPGLPGPPGPPGPVVYVSEQDGSVLSVPGPEGRPGFAGFPGP----AGPKGNLGSK 1165 Query: 82 PAVPLPGPAGRSGGPGAWSAQKHGGHLSGRAGGTGRKTEGLARAPGGAPGHGLQGGQP 139 PGP G G PG+ + G + G G P G PG+ + G P Sbjct: 1166 GERGSPGPKGEKGEPGSIFSPDGGALGPAQKGAKGEPGFRGPPGPYGRPGYKGEIGFP 1223 Score = 27.7 bits (60), Expect = 6.4 Identities = 33/131 (25%), Positives = 42/131 (32%), Gaps = 17/131 (12%) Query: 12 PASWSAAGPPDGAGRPAEHEATGGASSLHIKCMEAASLLPRPPGKAPPGAAKSTSRVHCR 71 PA A G P G P + G + P PG+ K Sbjct: 1193 PAQKGAKGEPGFRGPPGPYGRPGYKGEIGF---------PGRPGRPGMNGLKGEKGEPGD 1243 Query: 72 AAEGGGLRPVPAVPLPGPAGRSGGPGAWSAQKHGGHL---SGRAGGTGRKTEGLARAPGG 128 A+ G G+R +PGP G G PG + ++ S R G G P G Sbjct: 1244 ASLGFGMRG-----MPGPPGPPGPPGPPGTPVYDSNVFAESSRPGPPGLPGNQGPPGPKG 1298 Query: 129 APGHGLQGGQP 139 A G G P Sbjct: 1299 AKGEVGPPGPP 1309 >gi|110611233 alpha 1 type XVIII collagen isoform 2 precursor [Homo sapiens] Length = 1336 Score = 40.0 bits (92), Expect = 0.001 Identities = 41/141 (29%), Positives = 50/141 (35%), Gaps = 24/141 (17%) Query: 19 GPPDGAGRPAEHEAT------GGASSLHIKCMEAASLLPRPPGK-APPGAAKSTSRVHCR 71 GPP G H+ G ++ + P PPG PG R Sbjct: 452 GPPGPPGPSFRHDKLTFIDMEGSGFGGDLEALRGPRGFPGPPGPPGVPGLPGEPGRFGVN 511 Query: 72 AAEGGGLRPVPAVP-------------LPGPAGRSGGPGAWSAQKHGGHLSGRAGGTGRK 118 +++ G +P VP PGP GR G PG + QK G L G AG G K Sbjct: 512 SSDVPGPAGLPGVPGREGPPGFPGLPGPPGPPGREGPPGR-TGQK--GSL-GEAGAPGHK 567 Query: 119 TEGLARAPGGAPGHGLQGGQP 139 A P GA G G P Sbjct: 568 GSKGAPGPAGARGESGLAGAP 588 Score = 33.5 bits (75), Expect = 0.12 Identities = 34/103 (33%), Positives = 43/103 (41%), Gaps = 19/103 (18%) Query: 50 LPRPPGKA-PPGAA--KSTSRVHCRAAE----GGGLRPVPAVP-LPGPAGRSGGPGAWSA 101 +P PPG+A PPG+ + C + G L+ VP PGP GR G PG Sbjct: 347 VPGPPGRAGPPGSPCLPGPPGLPCPVSPLGPAGPALQTVPGPQGPPGPPGRDGTPGRDGE 406 Query: 102 QKHGGHLSGRAGGTGRKTEGLARAPG--------GAPGHGLQG 136 G G+ G TG +G PG G PG G +G Sbjct: 407 PGDPGE-DGKPGDTG--PQGFPGTPGDVGPKGDKGDPGVGERG 446 Score = 28.5 bits (62), Expect = 3.7 Identities = 30/118 (25%), Positives = 40/118 (33%), Gaps = 4/118 (3%) Query: 22 DGAGRPAEHEATGGASSLHIKCMEAASLLPRPPGKAPPGAAKSTSRVHCRAAEGGGLRPV 81 DG G+P G + + S+L P + PG A A G L Sbjct: 695 DGVGQPGLPGPPGPPGPVVYVSEQDGSVLSVPGPEGRPGFAGFPGP----AGPKGNLGSK 750 Query: 82 PAVPLPGPAGRSGGPGAWSAQKHGGHLSGRAGGTGRKTEGLARAPGGAPGHGLQGGQP 139 PGP G G PG+ + G + G G P G PG+ + G P Sbjct: 751 GERGSPGPKGEKGEPGSIFSPDGGALGPAQKGAKGEPGFRGPPGPYGRPGYKGEIGFP 808 Score = 27.7 bits (60), Expect = 6.4 Identities = 33/131 (25%), Positives = 42/131 (32%), Gaps = 17/131 (12%) Query: 12 PASWSAAGPPDGAGRPAEHEATGGASSLHIKCMEAASLLPRPPGKAPPGAAKSTSRVHCR 71 PA A G P G P + G + P PG+ K Sbjct: 778 PAQKGAKGEPGFRGPPGPYGRPGYKGEIGF---------PGRPGRPGMNGLKGEKGEPGD 828 Query: 72 AAEGGGLRPVPAVPLPGPAGRSGGPGAWSAQKHGGHL---SGRAGGTGRKTEGLARAPGG 128 A+ G G+R +PGP G G PG + ++ S R G G P G Sbjct: 829 ASLGFGMRG-----MPGPPGPPGPPGPPGTPVYDSNVFAESSRPGPPGLPGNQGPPGPKG 883 Query: 129 APGHGLQGGQP 139 A G G P Sbjct: 884 AKGEVGPPGPP 894 >gi|110611235 alpha 1 type XVIII collagen isoform 1 precursor [Homo sapiens] Length = 1516 Score = 40.0 bits (92), Expect = 0.001 Identities = 41/141 (29%), Positives = 50/141 (35%), Gaps = 24/141 (17%) Query: 19 GPPDGAGRPAEHEAT------GGASSLHIKCMEAASLLPRPPGK-APPGAAKSTSRVHCR 71 GPP G H+ G ++ + P PPG PG R Sbjct: 632 GPPGPPGPSFRHDKLTFIDMEGSGFGGDLEALRGPRGFPGPPGPPGVPGLPGEPGRFGVN 691 Query: 72 AAEGGGLRPVPAVP-------------LPGPAGRSGGPGAWSAQKHGGHLSGRAGGTGRK 118 +++ G +P VP PGP GR G PG + QK G L G AG G K Sbjct: 692 SSDVPGPAGLPGVPGREGPPGFPGLPGPPGPPGREGPPGR-TGQK--GSL-GEAGAPGHK 747 Query: 119 TEGLARAPGGAPGHGLQGGQP 139 A P GA G G P Sbjct: 748 GSKGAPGPAGARGESGLAGAP 768 Score = 33.5 bits (75), Expect = 0.12 Identities = 34/103 (33%), Positives = 43/103 (41%), Gaps = 19/103 (18%) Query: 50 LPRPPGKA-PPGAA--KSTSRVHCRAAE----GGGLRPVPAVP-LPGPAGRSGGPGAWSA 101 +P PPG+A PPG+ + C + G L+ VP PGP GR G PG Sbjct: 527 VPGPPGRAGPPGSPCLPGPPGLPCPVSPLGPAGPALQTVPGPQGPPGPPGRDGTPGRDGE 586 Query: 102 QKHGGHLSGRAGGTGRKTEGLARAPG--------GAPGHGLQG 136 G G+ G TG +G PG G PG G +G Sbjct: 587 PGDPGE-DGKPGDTG--PQGFPGTPGDVGPKGDKGDPGVGERG 626 Score = 28.5 bits (62), Expect = 3.7 Identities = 30/118 (25%), Positives = 40/118 (33%), Gaps = 4/118 (3%) Query: 22 DGAGRPAEHEATGGASSLHIKCMEAASLLPRPPGKAPPGAAKSTSRVHCRAAEGGGLRPV 81 DG G+P G + + S+L P + PG A A G L Sbjct: 875 DGVGQPGLPGPPGPPGPVVYVSEQDGSVLSVPGPEGRPGFAGFPGP----AGPKGNLGSK 930 Query: 82 PAVPLPGPAGRSGGPGAWSAQKHGGHLSGRAGGTGRKTEGLARAPGGAPGHGLQGGQP 139 PGP G G PG+ + G + G G P G PG+ + G P Sbjct: 931 GERGSPGPKGEKGEPGSIFSPDGGALGPAQKGAKGEPGFRGPPGPYGRPGYKGEIGFP 988 Score = 27.7 bits (60), Expect = 6.4 Identities = 33/131 (25%), Positives = 42/131 (32%), Gaps = 17/131 (12%) Query: 12 PASWSAAGPPDGAGRPAEHEATGGASSLHIKCMEAASLLPRPPGKAPPGAAKSTSRVHCR 71 PA A G P G P + G + P PG+ K Sbjct: 958 PAQKGAKGEPGFRGPPGPYGRPGYKGEIGF---------PGRPGRPGMNGLKGEKGEPGD 1008 Query: 72 AAEGGGLRPVPAVPLPGPAGRSGGPGAWSAQKHGGHL---SGRAGGTGRKTEGLARAPGG 128 A+ G G+R +PGP G G PG + ++ S R G G P G Sbjct: 1009 ASLGFGMRG-----MPGPPGPPGPPGPPGTPVYDSNVFAESSRPGPPGLPGNQGPPGPKG 1063 Query: 129 APGHGLQGGQP 139 A G G P Sbjct: 1064 AKGEVGPPGPP 1074 >gi|148536825 alpha 1 type IV collagen preproprotein [Homo sapiens] Length = 1669 Score = 39.3 bits (90), Expect = 0.002 Identities = 37/124 (29%), Positives = 40/124 (32%), Gaps = 22/124 (17%) Query: 19 GPPDGAGRPAEHEATGGASSLHIKCMEAASLLPRPPGKAPPGAAKSTSRVHCRAAEGGGL 78 GPP G G P TG P PPG P G + G Sbjct: 586 GPPGGVGFPGSRGDTGP---------------PGPPGYGPAGPIGDKGQAGFPGGPGSPG 630 Query: 79 RPVPA------VPLPGPAGRSGGPGAWSAQKHGGHLSGRAGGTGRKTEGLARAPGGAPGH 132 P P VPLPGP G G PG+ G G G GR + G PG Sbjct: 631 LPGPKGEPGKIVPLPGPPGAEGLPGSPGFPGPQGD-RGFPGTPGRPGLPGEKGAVGQPGI 689 Query: 133 GLQG 136 G G Sbjct: 690 GFPG 693 Score = 37.4 bits (85), Expect = 0.008 Identities = 33/94 (35%), Positives = 38/94 (40%), Gaps = 17/94 (18%) Query: 51 PRPPGKAPPGAAKSTSRVHCRAAEGGGLRPVPAVPLPGPAGRSGGPGAWSAQKHGGHLSG 110 P PPG PG A + R +G R P LPGP+GR G PG G Sbjct: 370 PGPPGLPVPGQAGAPGFPGERGEKGD--RGFPGTSLPGPSGRDGLPGP----------PG 417 Query: 111 RAGGTGRK--TEGLARAPGGAPG-HGLQG--GQP 139 G G+ T G+ G PG G G GQP Sbjct: 418 SPGPPGQPGYTNGIVECQPGPPGDQGPPGIPGQP 451 Score = 33.1 bits (74), Expect = 0.15 Identities = 40/144 (27%), Positives = 52/144 (36%), Gaps = 15/144 (10%) Query: 4 GVRSLVSTPASWSAAGPPDGAGRPAEHEATGGASSLHIKCMEAASLLPRPPG-------K 56 G++ ++ P GP G+ + G + + AS P PG Sbjct: 55 GLQGVIGFPGMQGPEGPQGPPGQKGDTGEPGLPGTKGTRGPPGASGYPGNPGLPGIPGQD 114 Query: 57 APPGAAKSTSRVHCRAAEGGGLRPVPAVPLPGPAGRSGGPGAWSAQKHGGHLSGRAGGTG 116 PPG C +G P+ LPG AG G PG + G + G G Sbjct: 115 GPPGPPGIPG---CNGTKGER-GPLGPPGLPGFAGNPGPPGLPGMKGDPGEILGHVPGML 170 Query: 117 RKTE-GLARAPG--GAPG-HGLQG 136 K E G PG G PG GLQG Sbjct: 171 LKGERGFPGIPGTPGPPGLPGLQG 194 Score = 28.5 bits (62), Expect = 3.7 Identities = 43/149 (28%), Positives = 48/149 (32%), Gaps = 47/149 (31%) Query: 4 GVRSLVSTPASWSAAGPPDGAGRPAEHEATGGASSLHIKCMEAASLLPRPPGKAPPGAAK 63 G+ + TP + G P G P EH A G I+ P PPG PG+ Sbjct: 746 GLPGIPGTPGEKGSIGVP---GVPGEHGAIGPPGLQGIRGE------PGPPGL--PGSVG 794 Query: 64 STSRVHCRAAEGGGLRPVPAVPLPGPAGRSGGPGAWSAQKHGGHLSGRAGGTGRKTEGLA 123 S P VP GP G G PG LSG G G K G Sbjct: 795 S-----------------PGVPGIGPPGARGPPGGQGPP----GLSGPPGIKGEK--GFP 831 Query: 124 RAPG-------------GAPGHGLQGGQP 139 PG G PG Q G P Sbjct: 832 GFPGLDMPGPKGDKGAQGLPGITGQSGLP 860 Score = 28.5 bits (62), Expect = 3.7 Identities = 37/145 (25%), Positives = 47/145 (32%), Gaps = 26/145 (17%) Query: 4 GVRSLVSTPASWSAAGPPDGAGRPAEHEATGGASSLHIKCMEAASLLPRPPGKAPPGAAK 63 GV+ P + GP G P G A P PG+ PG Sbjct: 1130 GVKGEAGLPGTPGPTGPAGQKGEPGSDGIPGSAGEKGE---------PGLPGRGFPGFPG 1180 Query: 64 STSRVHCRAAEG-GGLRPVPAVP----------LPGPAGRSGGPGAWSAQKHGGHLSGRA 112 + + G GL P +P PGP G+ G PG+ G G Sbjct: 1181 AKGDKGSKGEVGFPGLAGSPGIPGSKGEQGFMGPPGPQGQPGLPGS-----PGHATEGPK 1235 Query: 113 GGTGRKTE-GLARAPGGAPGHGLQG 136 G G + + GL PG GL G Sbjct: 1236 GDRGPQGQPGLPGLPGPMGPPGLPG 1260 Score = 28.1 bits (61), Expect = 4.9 Identities = 39/147 (26%), Positives = 47/147 (31%), Gaps = 24/147 (16%) Query: 4 GVRSLVSTPASWSAAGPPDGAGRPAEHEATGGASSLHIKCMEAASLLPRPPGK------- 56 G++ V P GPP G P E + G S K + + PPG Sbjct: 191 GLQGPVGPPGFTGPPGPPGPPGPPGE-KGQMGLSFQGPKGDKGDQGVSGPPGVPGQAQVQ 249 Query: 57 -----APPGAAKSTSRVHCRAAEGGGLRPVPAVPLP-------GPAGRSGGPGAWSAQKH 104 A G + G G + P P P G G G PG + Sbjct: 250 EKGDFATKGEKGQKGEPGFQGMPGVGEKGEPGKPGPRGKPGKDGDKGEKGSPGFPGEPGY 309 Query: 105 GGHLSGRAGGTGRKTEGLARAPGGAPG 131 G L GR G G K E P G PG Sbjct: 310 PG-LIGRQGPQGEKGEA---GPPGPPG 332 Score = 28.1 bits (61), Expect = 4.9 Identities = 33/100 (33%), Positives = 37/100 (37%), Gaps = 20/100 (20%) Query: 53 PPGKAPPGAAKSTSRVHCRAAEGGGLRPVPAVPLP-GPAGRSGGPGAWSAQKHGGHLSGR 111 PPG PPG T + + G R P P P G G G PG L G+ Sbjct: 327 PPG--PPGIVIGTGPLGEK-----GERGYPGTPGPRGEPGPKGFPG----------LPGQ 369 Query: 112 AGGTGRKTEGLARAPGGAPGHGLQG--GQPHCCLQADSRR 149 G G G A APG G +G G P L S R Sbjct: 370 PGPPGLPVPGQAGAPGFPGERGEKGDRGFPGTSLPGPSGR 409 Score = 28.1 bits (61), Expect = 4.9 Identities = 41/147 (27%), Positives = 52/147 (35%), Gaps = 29/147 (19%) Query: 19 GPPDGAGRPAEHEATGGASSLHIKCMEAASLL-------PRPPG-KAPPGAAKSTSRVHC 70 GPP G P G + K + S L PPG + PPG + Sbjct: 437 GPPGDQGPPGIPGQPGFIGEIGEKGQKGESCLICDIDGYRGPPGPQGPPGEIGFPGQPGA 496 Query: 71 RAAEG-GGLRPVPAVPLP-GPAGRSGGPGA--------WSAQKHGGH----------LSG 110 + G G V VP P G G G PGA + + G ++G Sbjct: 497 KGDRGLPGRDGVAGVPGPQGTPGLIGQPGAKGEPGEFYFDLRLKGDKGDPGFPGQPGMTG 556 Query: 111 RAGGTGRKTEGLARAPGGAPGH-GLQG 136 RAG GR P G+PG GL+G Sbjct: 557 RAGSPGRDGHPGLPGPKGSPGSVGLKG 583 Score = 28.1 bits (61), Expect = 4.9 Identities = 36/137 (26%), Positives = 44/137 (32%), Gaps = 25/137 (18%) Query: 9 VSTPASWSAAGPPDGAGRPAEHEATGGASSLHIKCMEAASLLPRPPGKAP-PGAAKSTSR 67 + P G AG P G S+ I M + L PG PG+ Sbjct: 1057 IGIPGLRGEKGDQGIAGFPGSPGEKGEKGSIGIPGMPGSPGLKGSPGSVGYPGSPGLPGE 1116 Query: 68 VHCRAAEG-------GGLRPVPAVPLP-GPAGRSGGPGAWSAQKHGGHLSGRAGGTGRKT 119 + G G +P P P GPAG+ G PG+ G G G K Sbjct: 1117 KGDKGLPGLDGIPGVKGEAGLPGTPGPTGPAGQKGEPGS----------DGIPGSAGEKG 1166 Query: 120 EGLARAPGGAPGHGLQG 136 E G PG G G Sbjct: 1167 E------PGLPGRGFPG 1177 >gi|239754955 PREDICTED: similar to COL22A1 protein [Homo sapiens] Length = 1073 Score = 39.3 bits (90), Expect = 0.002 Identities = 39/140 (27%), Positives = 53/140 (37%), Gaps = 12/140 (8%) Query: 2 HGGVRSLVSTPASWSAAGPPDGAGRPAEHEATGGASSLHIKCMEAASLLPRPPGKAPPGA 61 H G+ P GPP G+P G + S+ L + Sbjct: 871 HTGLMGPQGLPGENGPVGPPGPPGQPGFPGLRGESPSMETLRRLIQEELGKQLETRLAYL 930 Query: 62 AKSTSRVHCRAAEGGGLRPVPAVP-----LPGPAGRSGGPGAWSAQKHGGHLSGRAGGTG 116 + ++++G RP P P LPG AG G PG + G L G +G G Sbjct: 931 LAQMPPAYMKSSQG---RPGPPGPPGKDGLPGRAGPMGEPG----RPGQGGLEGPSGPIG 983 Query: 117 RKTEGLARAPGGAPGHGLQG 136 K E A+ GAPG GL+G Sbjct: 984 PKGERGAKGDPGAPGVGLRG 1003 Score = 33.9 bits (76), Expect = 0.089 Identities = 37/130 (28%), Positives = 45/130 (34%), Gaps = 10/130 (7%) Query: 19 GPPDGAGRPAEHEATGGASSLHIKCMEAASLLPR---PPGK-APPGAAKSTSRVHCRAAE 74 GPP AG G + K + +P PPG PPGA + Sbjct: 606 GPPGIAGPQGSQGERGADGEVGQKGDQGHPGVPGFMGPPGNPGPPGADGIAGAAGPPGIQ 665 Query: 75 GGGLRPVPAVPLPGPAGRSGGPGAWSAQKHGGHLS-----GRAGGTGRKTEGLARAPGGA 129 G + P P GP+G G PG + G G+AG G AR P G Sbjct: 666 GSPGKEGPPGP-QGPSGLPGIPGEEGKEGRDGKPGPPGEPGKAGEPGLPGPEGARGPPGF 724 Query: 130 PGHGLQGGQP 139 GH G P Sbjct: 725 KGHTGDSGAP 734 Score = 33.5 bits (75), Expect = 0.12 Identities = 42/144 (29%), Positives = 52/144 (36%), Gaps = 13/144 (9%) Query: 4 GVRSLVSTPASWSAAGPPDGAGRPAEHEATGGASSLHIKCMEAASLLPR-PPGKAPPGAA 62 G R S + G P +G P + + G S + L PR PPG+ Sbjct: 768 GPRGPPGKNGSPGSPGEPGPSGTPGQKGSKGENGSPGLP----GFLGPRGPPGEPGEKGV 823 Query: 63 KSTSRVHCRAAEGG--GLRPVPAVPLP-GPAGRSGGPGAWSAQKHGGHLSGRAGGTGRKT 119 V + E G G R P + GP G G PG H GH +G G G Sbjct: 824 PGKEGVPGKPGEPGFKGERGDPGIKGDKGPPGGKGQPGDPGIPGHKGH-TGLMGPQGLPG 882 Query: 120 EGLARAPGGAPGH----GLQGGQP 139 E P G PG GL+G P Sbjct: 883 ENGPVGPPGPPGQPGFPGLRGESP 906 Score = 33.1 bits (74), Expect = 0.15 Identities = 40/131 (30%), Positives = 46/131 (35%), Gaps = 14/131 (10%) Query: 17 AAGPPDGAGRPAEHEATG--GASSLH----IKCMEAASLLPRPPGKAPPGAAKSTSRVHC 70 AAGPP G P + G G S L + E P PPG+ PG A Sbjct: 658 AAGPPGIQGSPGKEGPPGPQGPSGLPGIPGEEGKEGRDGKPGPPGE--PGKAGEPGLPGP 715 Query: 71 RAAEG--GGLRPVPAVPLPGPAGRSGGPGAWSAQKHGGHLSGRAGGTGRKTEGLARAPGG 128 A G G PGP G SG G + L G+ G TG + P G Sbjct: 716 EGARGPPGFKGHTGDSGAPGPRGESGAMGLPGQEG----LPGKDGDTGPTGPQGPQGPRG 771 Query: 129 APGHGLQGGQP 139 PG G P Sbjct: 772 PPGKNGSPGSP 782 Score = 32.0 bits (71), Expect = 0.34 Identities = 44/142 (30%), Positives = 50/142 (35%), Gaps = 20/142 (14%) Query: 4 GVRSLVSTPASWSAAGPPDGAGRPA---EHEATGGASSLHIKCMEAASLLPRPPGKA-PP 59 G + L P AG P G P E G L + ++ G A PP Sbjct: 271 GEQGLAGRPGEKGEAGLPGAPGFPGVRGEKGDQGEKGELGLPGLKGDRGEKGEAGPAGPP 330 Query: 60 GAAKSTSRV--HCRAAEGGGLRPVPAVP-LPGPAGRSGGPGAWSAQKHGGHLSGRAGGTG 116 G +TS H R G + P LPG G G PG Q G G G Sbjct: 331 GLPGTTSLFTPHPRMPGEQGPKGEKGDPGLPGEPGLQGRPGELGPQ-------GPTGPPG 383 Query: 117 RK-TEGLARAPG-----GAPGH 132 K EG APG GAPGH Sbjct: 384 AKGQEGAHGAPGAAGNPGAPGH 405 Score = 31.2 bits (69), Expect = 0.58 Identities = 26/87 (29%), Positives = 29/87 (33%), Gaps = 7/87 (8%) Query: 53 PPGKAPPGAAKSTSRVHCRAAEGGGLRPVPAVPLPGPAGRSGGPGAWSAQKHGGHLSGRA 112 P G P AK H G V PGP+G G GA L G Sbjct: 375 PQGPTGPPGAKGQEGAHGAPGAAGNPGAPGHVGAPGPSGPPGSVGA-------PGLRGTP 427 Query: 113 GGTGRKTEGLARAPGGAPGHGLQGGQP 139 G G + E A G+PG G P Sbjct: 428 GKDGERGEKGAAGEEGSPGPVGPRGDP 454 Score = 28.1 bits (61), Expect = 4.9 Identities = 37/139 (26%), Positives = 41/139 (29%), Gaps = 21/139 (15%) Query: 4 GVRSLVSTPASWSAAGPPDGAGRPAEHEATGGASSLHIKCMEAASLLPRPPGKAP----- 58 G L TP G AG G A LP PPGK Sbjct: 419 GAPGLRGTPGKDGERGEKGAAGEEGSPGPVGPRGD------PGAPGLPGPPGKGKDGEPG 472 Query: 59 ----PGAAKSTSRVHCRAAEG----GGLRPVPAVPLPGPAGRSGGPGAWSAQKHGG--HL 108 PG R A G G R P + + GP G SG PG + G Sbjct: 473 LRGSPGLPGPLGTKGDRGAPGIPGSPGSRGDPGIGVAGPPGPSGPPGDKGSPGSRGLPGF 532 Query: 109 SGRAGGTGRKTEGLARAPG 127 G G GR +PG Sbjct: 533 PGPQGPAGRDGLSSLLSPG 551 Score = 27.7 bits (60), Expect = 6.4 Identities = 22/53 (41%), Positives = 24/53 (45%), Gaps = 4/53 (7%) Query: 88 GPAGRSGGPGAWSAQKHGGHLSGRAGGTGRKTE-GLARAPG--GAPGH-GLQG 136 GPAG G PG S + G G G K + GL PG G PG G QG Sbjct: 325 GPAGPPGLPGTTSLFTPHPRMPGEQGPKGEKGDPGLPGEPGLQGRPGELGPQG 377 >gi|47778921 alpha 1 type XIX collagen precursor [Homo sapiens] Length = 1142 Score = 39.3 bits (90), Expect = 0.002 Identities = 40/138 (28%), Positives = 49/138 (35%), Gaps = 19/138 (13%) Query: 4 GVRSLVSTPASWSAAGPPDGAGRPAEHEATGGASSLHIKCMEAASL----LPRPPGKA-P 58 G++ + S GPP G P EH G K + LP P G+A P Sbjct: 522 GLKGQQGSAGSMGPRGPPGDVGLPGEHGIPGKQGIKGEKGDPGGIIGPPGLPGPKGEAGP 581 Query: 59 PGAAKSTSRVHCRAAEGGGLRPVPAVPLP-GPAGRSGGPGAWSAQ----KHGGHLSGRAG 113 PG + GL P P P GP G G PG + G + GR G Sbjct: 582 PGKSLPGE---------PGLDGNPGAPGPRGPKGERGLPGVHGSPGDIGPQGIGIPGRTG 632 Query: 114 GTGRKTEGLARAPGGAPG 131 G E + P G PG Sbjct: 633 AQGPAGEPGIQGPRGLPG 650 Score = 37.7 bits (86), Expect = 0.006 Identities = 35/125 (28%), Positives = 48/125 (38%), Gaps = 19/125 (15%) Query: 10 STPASWSAAGPPDGAGRPAEHEATGGASSLHIKCMEAASLLPRPPGKAPPGAAKSTSRVH 69 S P S G GAG P ++++ + + P PG+ P +K Sbjct: 702 SVPGLKSNKGEEGGAGEPGKYDSMARKGDIGPRGP------PGIPGREGPKGSKGERGYP 755 Query: 70 CRAAEGG--GLRPVPAVP-LPGPAGRSGGPGAWSAQKHGGHLSGRAGGTGRKTEGLARAP 126 E G GL+ +P +P PGP G G G +G G TG K E + P Sbjct: 756 GIPGEKGDEGLQGIPGIPGAPGPTGPPGLMGR----------TGHPGPTGAKGEKGSDGP 805 Query: 127 GGAPG 131 G PG Sbjct: 806 PGKPG 810 Score = 35.8 bits (81), Expect = 0.023 Identities = 42/146 (28%), Positives = 57/146 (39%), Gaps = 17/146 (11%) Query: 5 VRSLVSTPASWSAAGPPDGAGRPAEHEATGGASSLHIKCMEAASLLPRPPGKA-PPGAAK 63 ++ V+ P+ GPP G P G ++ + +E + G A PPG A Sbjct: 831 IKGGVNVPSYPGPPGPPGPKGDPGP---VGEPGAMGLPGLEGFPGVKGDRGPAGPPGIAG 887 Query: 64 STSRVHCRAAEG-----GGLRPVPAVPLPGPAGRSGGPGAWSAQKHGG--HLSGRAGGTG 116 + + G G PV + PGP G SG PG G + G+ G G Sbjct: 888 MSGKPGAPGPPGVPGEPGERGPVGDIGFPGPEGPSGKPGINGKDGIPGAQGIMGKPGDRG 947 Query: 117 RKTEGLARAPGGAPG-HGLQG--GQP 139 K E R G PG G QG G+P Sbjct: 948 PKGE---RGDQGIPGDRGSQGERGKP 970 Score = 30.4 bits (67), Expect = 0.99 Identities = 46/158 (29%), Positives = 52/158 (32%), Gaps = 35/158 (22%) Query: 4 GVRSLVSTPASWSAAGPPDGAGRPAEHEATGGASSLHIKCM---EAASL--------LPR 52 G R P GPP G H+ GG + K EA L LP Sbjct: 409 GRRGKTGPPGKPGPPGPPGPPGIQGIHQTLGGYYNKDNKGNDEHEAGGLKGDKGETGLPG 468 Query: 53 PPGKAPPGAAKSTSRVHCRAAEGG--------GLRPVPAVPL-PGPAGRSGGPGAWSAQK 103 PG P K E G G + V P PGP G G PG Sbjct: 469 FPGSVGPKGQKGEPGEPFTKGEKGDRGEPGVIGSQGVKGEPGDPGPPGLIGSPG------ 522 Query: 104 HGGHLSGRAGGTGRKTEGLARAPG--GAPG-HGLQGGQ 138 L G+ G G + G PG G PG HG+ G Q Sbjct: 523 ----LKGQQGSAG--SMGPRGPPGDVGLPGEHGIPGKQ 554 >gi|40805823 collagen, type XXII, alpha 1 [Homo sapiens] Length = 1626 Score = 39.3 bits (90), Expect = 0.002 Identities = 39/140 (27%), Positives = 53/140 (37%), Gaps = 12/140 (8%) Query: 2 HGGVRSLVSTPASWSAAGPPDGAGRPAEHEATGGASSLHIKCMEAASLLPRPPGKAPPGA 61 H G+ P GPP G+P G + S+ L + Sbjct: 1424 HTGLMGPQGLPGENGPVGPPGPPGQPGFPGLRGESPSMETLRRLIQEELGKQLETRLAYL 1483 Query: 62 AKSTSRVHCRAAEGGGLRPVPAVP-----LPGPAGRSGGPGAWSAQKHGGHLSGRAGGTG 116 + ++++G RP P P LPG AG G PG + G L G +G G Sbjct: 1484 LAQMPPAYMKSSQG---RPGPPGPPGKDGLPGRAGPMGEPG----RPGQGGLEGPSGPIG 1536 Query: 117 RKTEGLARAPGGAPGHGLQG 136 K E A+ GAPG GL+G Sbjct: 1537 PKGERGAKGDPGAPGVGLRG 1556 Score = 36.6 bits (83), Expect = 0.014 Identities = 41/133 (30%), Positives = 51/133 (38%), Gaps = 25/133 (18%) Query: 19 GPP--DGA----GRPAEHEATGGASSLHIKCMEAASLLPRPPGKA-PPGAAKSTSRVHCR 71 GPP DG+ G P E G + ++ + LP PPG+ PG R Sbjct: 539 GPPGRDGSKGMRGEPGELGEPGLPGEVGMRGPQGPPGLPGPPGRVGAPGLQGERGEKGTR 598 Query: 72 AAEGG-GLRPVPAVPLPGPAGRSGGPGAWSAQKHGGHLSGRAGGTGRKTEGLARAPGGAP 130 +G GL P P G G+ G PG SG AG G K + P G P Sbjct: 599 GEKGERGLDGFPGKP--GDTGQQGRPGP----------SGVAGPQGEKGDVGPAGPPGVP 646 Query: 131 G-----HGLQGGQ 138 G GL+G Q Sbjct: 647 GSVVQQEGLKGEQ 659 Score = 33.9 bits (76), Expect = 0.089 Identities = 37/130 (28%), Positives = 45/130 (34%), Gaps = 10/130 (7%) Query: 19 GPPDGAGRPAEHEATGGASSLHIKCMEAASLLPR---PPGK-APPGAAKSTSRVHCRAAE 74 GPP AG G + K + +P PPG PPGA + Sbjct: 1159 GPPGIAGPQGSQGERGADGEVGQKGDQGHPGVPGFMGPPGNPGPPGADGIAGAAGPPGIQ 1218 Query: 75 GGGLRPVPAVPLPGPAGRSGGPGAWSAQKHGGHLS-----GRAGGTGRKTEGLARAPGGA 129 G + P P GP+G G PG + G G+AG G AR P G Sbjct: 1219 GSPGKEGPPGP-QGPSGLPGIPGEEGKEGRDGKPGPPGEPGKAGEPGLPGPEGARGPPGF 1277 Query: 130 PGHGLQGGQP 139 GH G P Sbjct: 1278 KGHTGDSGAP 1287 Score = 33.5 bits (75), Expect = 0.12 Identities = 42/144 (29%), Positives = 52/144 (36%), Gaps = 13/144 (9%) Query: 4 GVRSLVSTPASWSAAGPPDGAGRPAEHEATGGASSLHIKCMEAASLLPR-PPGKAPPGAA 62 G R S + G P +G P + + G S + L PR PPG+ Sbjct: 1321 GPRGPPGKNGSPGSPGEPGPSGTPGQKGSKGENGSPGLP----GFLGPRGPPGEPGEKGV 1376 Query: 63 KSTSRVHCRAAEGG--GLRPVPAVPLP-GPAGRSGGPGAWSAQKHGGHLSGRAGGTGRKT 119 V + E G G R P + GP G G PG H GH +G G G Sbjct: 1377 PGKEGVPGKPGEPGFKGERGDPGIKGDKGPPGGKGQPGDPGIPGHKGH-TGLMGPQGLPG 1435 Query: 120 EGLARAPGGAPGH----GLQGGQP 139 E P G PG GL+G P Sbjct: 1436 ENGPVGPPGPPGQPGFPGLRGESP 1459 Score = 33.1 bits (74), Expect = 0.15 Identities = 35/126 (27%), Positives = 42/126 (33%), Gaps = 6/126 (4%) Query: 19 GPPDGAGRPAEHEATGGASSLHIKCMEAASLLPRPPGKAPPGAAKSTSRVHCRAAEGGGL 78 GPP G+ H A G A + A PPG + T E G Sbjct: 898 GPPGAKGQEGAHGAPGAAGNPGAPGHVGAPGPSGPPGSVGAPGLRGTPGKDGERGEKGAA 957 Query: 79 RPVPAVPLPGPAGRSGGPGAWSAQKHGGHLSGRAGGTG-RKTEGLARAPGGAPGHGLQGG 137 + PGP G G PGA G G+ G G R + GL G G G Sbjct: 958 GEEGS---PGPVGPRGDPGAPGLPGPPG--KGKDGEPGLRGSPGLPGPLGTKAACGKVRG 1012 Query: 138 QPHCCL 143 +C L Sbjct: 1013 SENCAL 1018 Score = 33.1 bits (74), Expect = 0.15 Identities = 40/131 (30%), Positives = 46/131 (35%), Gaps = 14/131 (10%) Query: 17 AAGPPDGAGRPAEHEATG--GASSLH----IKCMEAASLLPRPPGKAPPGAAKSTSRVHC 70 AAGPP G P + G G S L + E P PPG+ PG A Sbjct: 1211 AAGPPGIQGSPGKEGPPGPQGPSGLPGIPGEEGKEGRDGKPGPPGE--PGKAGEPGLPGP 1268 Query: 71 RAAEG--GGLRPVPAVPLPGPAGRSGGPGAWSAQKHGGHLSGRAGGTGRKTEGLARAPGG 128 A G G PGP G SG G + L G+ G TG + P G Sbjct: 1269 EGARGPPGFKGHTGDSGAPGPRGESGAMGLPGQEG----LPGKDGDTGPTGPQGPQGPRG 1324 Query: 129 APGHGLQGGQP 139 PG G P Sbjct: 1325 PPGKNGSPGSP 1335 Score = 32.7 bits (73), Expect = 0.20 Identities = 32/98 (32%), Positives = 41/98 (41%), Gaps = 12/98 (12%) Query: 51 PRPPGKAP-PGAAK----STSRVHCRAAEGGGLRPVPAVPLPGPAGRSG--GP-GAWSAQ 102 P PP + P PG+ + T C A E G + + LPGP G G GP GA + Sbjct: 454 PPPPQRPPTPGSEQIGFLKTINCSCPAGEKGEMGVAGPMGLPGPKGDIGAIGPVGAPGPK 513 Query: 103 KHGGHLSGRAGGTGRKTE----GLARAPGGAPGHGLQG 136 G + G G K E GL PG G++G Sbjct: 514 GEKGDVGIGPFGQGEKGEKGSLGLPGPPGRDGSKGMRG 551 Score = 32.3 bits (72), Expect = 0.26 Identities = 43/131 (32%), Positives = 49/131 (37%), Gaps = 19/131 (14%) Query: 17 AAGPPDGAGRPAEHEATGGASSLHIKCMEAASL-LPRPPGKAPPGAAKSTSRVHCRAAEG 75 A GP G E G + E SL LP PPG+ +K E Sbjct: 503 AIGPVGAPGPKGEKGDVGIGPFGQGEKGEKGSLGLPGPPGR---DGSKGMRGEPGELGEP 559 Query: 76 G-----GLRPVPAVP-LPGPAGRSGGPGAWSAQKHGGHLSGRAGGTGRKTE-GLARAPGG 128 G G+R P LPGP GR G PG + G G G K E GL P G Sbjct: 560 GLPGEVGMRGPQGPPGLPGPPGRVGAPGLQGER-------GEKGTRGEKGERGLDGFP-G 611 Query: 129 APGHGLQGGQP 139 PG Q G+P Sbjct: 612 KPGDTGQQGRP 622 Score = 32.0 bits (71), Expect = 0.34 Identities = 44/142 (30%), Positives = 50/142 (35%), Gaps = 20/142 (14%) Query: 4 GVRSLVSTPASWSAAGPPDGAGRPA---EHEATGGASSLHIKCMEAASLLPRPPGKA-PP 59 G + L P AG P G P E G L + ++ G A PP Sbjct: 789 GEQGLAGRPGEKGEAGLPGAPGFPGVRGEKGDQGEKGELGLPGLKGDRGEKGEAGPAGPP 848 Query: 60 GAAKSTSRV--HCRAAEGGGLRPVPAVP-LPGPAGRSGGPGAWSAQKHGGHLSGRAGGTG 116 G +TS H R G + P LPG G G PG Q G G G Sbjct: 849 GLPGTTSLFTPHPRMPGEQGPKGEKGDPGLPGEPGLQGRPGELGPQ-------GPTGPPG 901 Query: 117 RK-TEGLARAPG-----GAPGH 132 K EG APG GAPGH Sbjct: 902 AKGQEGAHGAPGAAGNPGAPGH 923 Score = 31.2 bits (69), Expect = 0.58 Identities = 26/87 (29%), Positives = 29/87 (33%), Gaps = 7/87 (8%) Query: 53 PPGKAPPGAAKSTSRVHCRAAEGGGLRPVPAVPLPGPAGRSGGPGAWSAQKHGGHLSGRA 112 P G P AK H G V PGP+G G GA L G Sbjct: 893 PQGPTGPPGAKGQEGAHGAPGAAGNPGAPGHVGAPGPSGPPGSVGA-------PGLRGTP 945 Query: 113 GGTGRKTEGLARAPGGAPGHGLQGGQP 139 G G + E A G+PG G P Sbjct: 946 GKDGERGEKGAAGEEGSPGPVGPRGDP 972 Score = 29.3 bits (64), Expect = 2.2 Identities = 18/46 (39%), Positives = 21/46 (45%), Gaps = 11/46 (23%) Query: 53 PPGKAPPGAAKSTSRVHCRAAEGGGLRPVPAVPLP-GPAGRSGGPG 97 PPG + P K + G R +P P P GPAGR G PG Sbjct: 1049 PPGPSGPPGDKGSP----------GSRGLPGFPGPQGPAGRDGAPG 1084 Score = 28.9 bits (63), Expect = 2.9 Identities = 32/96 (33%), Positives = 35/96 (36%), Gaps = 14/96 (14%) Query: 51 PRPPG-KAPPGAAKSTSRVHCRAAEGGGLRPVPAVPL--------PGPAGRSGGPGAWSA 101 P PPG PPG S G P P P PGP G G PG Sbjct: 716 PGPPGVPGPPGPGGSPGLPGEIGFPGKPGPPGPTGPPGKDGPNGPPGPPGTKGEPG---- 771 Query: 102 QKHGGHLSGRAGGTGRKTE-GLARAPGGAPGHGLQG 136 ++ L G+ G G E GLA PG GL G Sbjct: 772 ERGEDGLPGKPGLRGEIGEQGLAGRPGEKGEAGLPG 807 Score = 28.5 bits (62), Expect = 3.7 Identities = 41/135 (30%), Positives = 48/135 (35%), Gaps = 18/135 (13%) Query: 19 GPPDGAGRPAEHEATG--GASSLHIKCMEAASLLPRPPGKAPPGAAKSTSRVHCRAAEGG 76 GPP G P E G G L + E L RP K G + R +G Sbjct: 762 GPPGTKGEPGERGEDGLPGKPGLRGEIGEQG-LAGRPGEKGEAGLPGAPGFPGVRGEKGD 820 Query: 77 ----GLRPVPAVP-------LPGPAGRSGGPGAWSAQKHGGHLSGRAGGTGRKTE-GLAR 124 G +P + GPAG G PG S + G G G K + GL Sbjct: 821 QGEKGELGLPGLKGDRGEKGEAGPAGPPGLPGTTSLFTPHPRMPGEQGPKGEKGDPGLPG 880 Query: 125 APG--GAPGH-GLQG 136 PG G PG G QG Sbjct: 881 EPGLQGRPGELGPQG 895 Score = 28.1 bits (61), Expect = 4.9 Identities = 41/142 (28%), Positives = 49/142 (34%), Gaps = 17/142 (11%) Query: 4 GVRSLVSTPASWSAAGPPDGAGRPAEHEATG--GASSL----HIKCMEAASLLPRPPGKA 57 G R L P AG G P E G G SSL I + PPG Sbjct: 1063 GSRGLPGFPGPQGPAGRDGAPGNPGERGPPGKPGLSSLLSPGDINLLAKDVCNDCPPG-- 1120 Query: 58 PPGAA-----KSTSRVHCRAAEGG--GLRPVPAVP-LPGPAGRSGGPGAWSAQKHGGHLS 109 PPG K V + G G + P LPGP G +G G+ + G + Sbjct: 1121 PPGLPGLPGFKGDKGVPGKPGREGTEGKKGEAGPPGLPGPPGIAGPQGSQGERGADGEV- 1179 Query: 110 GRAGGTGRKTEGLARAPGGAPG 131 G+ G G P G PG Sbjct: 1180 GQKGDQGHPGVPGFMGPPGNPG 1201 Score = 27.3 bits (59), Expect = 8.4 Identities = 20/56 (35%), Positives = 23/56 (41%), Gaps = 2/56 (3%) Query: 77 GLRPVPAVP-LPGPAGRSGGPGAWSAQKHGGHLSGRAGGTGRKTEGLARAPGGAPG 131 GL+ P P +PGP G G PG G G G TG + P G PG Sbjct: 711 GLQGPPGPPGVPGPPGPGGSPGLPGEIGFPGK-PGPPGPTGPPGKDGPNGPPGPPG 765 >gi|122937269 Wilms tumor 1 interacting protein [Homo sapiens] Length = 430 Score = 39.3 bits (90), Expect = 0.002 Identities = 32/97 (32%), Positives = 36/97 (37%), Gaps = 17/97 (17%) Query: 2 HGGVRSLVSTPASWSAAGPPDGAGRPAEHEATGGASSLHIKCMEAASLLPRPPGKAPPGA 61 HG RS + P G G P+ A SSL + A PPG P A Sbjct: 118 HGSPRS--------GRSDPRPGPGPPSVGSARSSVSSLGSRGSAGAYADFLPPGACPAPA 169 Query: 62 AKSTSRVHCRAAEGGGLRPVPAVPLPGPAGRSGGPGA 98 R+ E G P P LP P GR GGP A Sbjct: 170 ---------RSPEPAGPAPFPLPALPLPPGREGGPSA 197 >gi|239748099 PREDICTED: hypothetical protein [Homo sapiens] Length = 295 Score = 38.9 bits (89), Expect = 0.003 Identities = 33/89 (37%), Positives = 38/89 (42%), Gaps = 15/89 (16%) Query: 51 PRPPGKAPPGAAKSTSRVHCRAAEGGGLRPVPA-VPLPGPAGRSGGPGAWSAQKHGGHLS 109 P P PG + RAA GGG R P VP PAG S GG+ S Sbjct: 176 PTTPASRNPGLRAQERQSGRRAAGGGGARAEPPRVPPCRPAGCS-----------GGNRS 224 Query: 110 GRAGGTGRKT---EGLARAPGGAPGHGLQ 135 RA G G +T + R PG AP GL+ Sbjct: 225 RRAAGAGPRTTRRKPPPRPPGTAPAAGLR 253 Score = 27.3 bits (59), Expect = 8.4 Identities = 41/141 (29%), Positives = 48/141 (34%), Gaps = 21/141 (14%) Query: 17 AAGPPDGAGRPAEHEATGGAS---SLHIKCMEAASLLPRPPG--KAPPGAAKSTSRVHCR 71 A+ A P+ A G SL + A+S L G P G KS Sbjct: 23 ASSSSRSAAAPSSSSAQSGPELGLSLGPRLPSASSKLRVFTGYFSVPHGVGKSAGAA--- 79 Query: 72 AAEGGGLRPVPAVPLP------GP--AGRSGGPGAWSAQKHGGHLSGRAGGTGRKTEGLA 123 A E GG R P GP A R GG G W GG L R T + G + Sbjct: 80 AGEEGGARLQATRTWPAGILEGGPQVAARGGGRG-WE----GGGLGARRAVTAARRGGAS 134 Query: 124 RAPGGAPGHGLQGGQPHCCLQ 144 R G P +P C Q Sbjct: 135 RPLAGEPWREAARRRPQQCPQ 155 Database: hs.faa Posted date: Aug 4, 2009 4:42 PM Number of letters in database: 18,247,518 Number of sequences in database: 37,866 Lambda K H 0.316 0.135 0.432 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 11,438,543 Number of Sequences: 37866 Number of extensions: 783698 Number of successful extensions: 7164 Number of sequences better than 10.0: 30 Number of HSP's better than 10.0 without gapping: 144 Number of HSP's successfully gapped in prelim test: 698 Number of HSP's that attempted gapping in prelim test: 4716 Number of HSP's gapped (non-prelim): 2355 length of query: 194 length of database: 18,247,518 effective HSP length: 97 effective length of query: 97 effective length of database: 14,574,516 effective search space: 1413728052 effective search space used: 1413728052 T: 11 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.6 bits) S2: 59 (27.3 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.