Guide to the Human Genome
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Name: LOC100287063 Sequence: fasta or formatted (295aa) NCBI GI: 239748099
Description:

PREDICTED: hypothetical protein

Not currently referenced in the text

Other entries for this name:
alt prot {224aa} PREDICTED: hypothetical protein XP_002342368
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine            15.3         45           3
 C cysteine            1.0          3           1
 D aspartate           0.3          1           1
 E glutamate           4.4         13           2
 F phenylalanine       1.0          3           1
 G glycine            13.9         41           4
 H histidine           1.0          3           1
 I isoleucine          1.7          5           1
 K lysine              1.4          4           1
 L leucine             6.8         20           2
 M methionine          0.7          2           1
 N asparagine          1.4          4           1
 P proline            13.2         39           3
 Q glutamine           3.7         11           2
 R arginine           12.9         38           3
 S serine              9.8         29           4
 T threonine           4.1         12           2
 V valine              4.7         14           1
 W tryptophan          1.4          4           1
 Y tyrosine            1.4          4           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   PREDICTED: hypothetical protein 
LOC100287063          0.695   PREDICTED: hypothetical protein XP_002342368 
FLJ37078              0.052   hypothetical protein LOC222183 
LOC100287499          0.049   PREDICTED: hypothetical protein 
LOC100287499          0.049   PREDICTED: hypothetical protein XP_002343643 
TAF4                  0.047   TBP-associated factor 4 
LOC100290812          0.045   PREDICTED: hypothetical protein XP_002347678 
LOC100288205          0.045   PREDICTED: hypothetical protein XP_002343496 
COL1A2                0.044   alpha 2 type I collagen 
LOC100292370          0.044   PREDICTED: hypothetical protein 
LOC100130360          0.044   PREDICTED: hypothetical protein 
LOC348751             0.042   PREDICTED: hypothetical protein 
LOC348751             0.042   PREDICTED: hypothetical protein isoform 4 
LOC348751             0.042   PREDICTED: hypothetical protein isoform 2 
MAGI2                 0.042   membrane associated guanylate kinase, WW and PDZ dom...
LOC100290023          0.042   PREDICTED: hypothetical protein XP_002348147 
LOC338758             0.040   PREDICTED: hypothetical protein 
LOC338758             0.040   PREDICTED: hypothetical protein 
LOC338758             0.040   PREDICTED: hypothetical protein 
C17orf65              0.040   hypothetical protein LOC339201 
LOC100293975          0.038   PREDICTED: hypothetical protein 
LOC100292745          0.037   PREDICTED: hypothetical protein 
LOC100289661          0.037   PREDICTED: hypothetical protein 
LOC100290074          0.037   PREDICTED: hypothetical protein XP_002346855 
LOC100130360          0.037   PREDICTED: hypothetical protein 
LOC100289661          0.037   PREDICTED: hypothetical protein XP_002343723 
LOC100287034          0.037   PREDICTED: hypothetical protein XP_002342693 
SYN1                  0.035   synapsin I isoform Ia 
SYN1                  0.035   synapsin I isoform Ib 
LOC100129571          0.035   PREDICTED: similar to hCG1646049 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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