Guide to the Human Genome
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Name: LOC100290082 Sequence: fasta or formatted (194aa) NCBI GI: 239751597
Description:

PREDICTED: hypothetical protein XP_002347925

Not currently referenced in the text

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine            16.0         31           2
 C cysteine            3.1          6           2
 D aspartate           1.5          3           1
 E glutamate           3.1          6           1
 F phenylalanine       0.5          1           1
 G glycine            17.0         33           3
 H histidine           4.6          9           1
 I isoleucine          1.5          3           1
 K lysine              2.6          5           1
 L leucine            10.3         20           3
 M methionine          1.0          2           1
 N asparagine          0.0          0           0
 P proline            11.3         22           2
 Q glutamine           2.6          5           1
 R arginine            8.8         17           2
 S serine              8.2         16           2
 T threonine           3.1          6           1
 V valine              3.6          7           1
 W tryptophan          1.0          2           1
 Y tyrosine            0.0          0           0
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   PREDICTED: hypothetical protein XP_002347925 
LOC100292513          1.000   PREDICTED: hypothetical protein 
LOC100287331          1.000   PREDICTED: hypothetical protein XP_002344192 
COL3A1                0.058   collagen type III alpha 1 preproprotein 
COL2A1                0.053   collagen, type II, alpha 1 isoform 1 precursor [Hom...
COL2A1                0.053   collagen, type II, alpha 1 isoform 2 precursor [Hom...
COL10A1               0.053   type X collagen alpha 1 precursor 
SFPQ                  0.053   splicing factor proline/glutamine rich (polypyrimidin...
COL11A1               0.050   alpha 1 type XI collagen isoform B preproprotein [Ho...
COL11A1               0.050   alpha 1 type XI collagen isoform C preproprotein [Ho...
COL11A1               0.050   alpha 1 type XI collagen isoform A preproprotein [Ho...
COL1A2                0.050   alpha 2 type I collagen 
COL1A1                0.047   alpha 1 type I collagen preproprotein 
COL5A1                0.047   alpha 1 type V collagen preproprotein 
PPP1R10               0.045   protein phosphatase 1, regulatory subunit 10 
TAF4                  0.045   TBP-associated factor 4 
COL5A3                0.045   collagen, type V, alpha 3 preproprotein 
LOC100293375          0.042   PREDICTED: hypothetical protein 
COL9A3                0.042   alpha 3 type IX collagen 
COL4A6                0.040   type IV alpha 6 collagen isoform A precursor 
COL4A6                0.040   type IV alpha 6 collagen isoform B precursor 
COL18A1               0.040   alpha 1 type XVIII collagen isoform 3 precursor [Ho...
COL18A1               0.040   alpha 1 type XVIII collagen isoform 2 precursor [Ho...
COL18A1               0.040   alpha 1 type XVIII collagen isoform 1 precursor [Ho...
COL4A1                0.037   alpha 1 type IV collagen preproprotein 
LOC100293055          0.037   PREDICTED: similar to COL22A1 protein 
COL19A1               0.037   alpha 1 type XIX collagen precursor 
COL22A1               0.037   collagen, type XXII, alpha 1 
WTIP                  0.037   Wilms tumor 1 interacting protein 
LOC100287063          0.037   PREDICTED: hypothetical protein 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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