Guide to the Human Genome
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Name: C10orf140 Sequence: fasta or formatted (908aa) NCBI GI: 148762982
Description:

hypothetical protein LOC387640

Not currently referenced in the text

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine            13.8        125          21
 C cysteine            2.5         23           1
 D aspartate           3.9         35           2
 E glutamate           6.9         63          10
 F phenylalanine       3.5         32           1
 G glycine             5.3         48           2
 H histidine           4.7         43          15
 I isoleucine          2.6         24           2
 K lysine              6.7         61           2
 L leucine             7.3         66           4
 M methionine          0.4          4           1
 N asparagine          3.7         34           2
 P proline             8.3         75           3
 Q glutamine           3.0         27           2
 R arginine            5.4         49           3
 S serine             10.5         95           4
 T threonine           5.0         45           2
 V valine              3.5         32           1
 W tryptophan          0.8          7           1
 Y tyrosine            2.2         20           2
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   hypothetical protein LOC387640 
FUSSEL18              0.033   PREDICTED: functional smad suppressing element 18 [...
FUSSEL18              0.032   PREDICTED: functional smad suppressing element 18 [...
FUSSEL18              0.032   PREDICTED: functional smad suppressing element 18 [...
C17orf96              0.028   hypothetical protein LOC100170841 
MEOX2                 0.026   mesenchyme homeobox 2 
POU3F3                0.022   POU class 3 homeobox 3 
ARID1B                0.020   AT rich interactive domain 1B (SWI1-like) isoform 2 ...
ARID1B                0.020   AT rich interactive domain 1B (SWI1-like) isoform 1 ...
ARID1B                0.020   AT rich interactive domain 1B (SWI1-like) isoform 3 ...
HOXA13                0.019   homeobox A13 
FOXB2                 0.019   forkhead box B2 
DYRK1A                0.018   dual-specificity tyrosine-(Y)-phosphorylation regula...
DYRK1A                0.018   dual-specificity tyrosine-(Y)-phosphorylation regula...
HRC                   0.018   histidine rich calcium binding protein precursor [Hom...
OTX1                  0.018   orthodenticle homeobox 1 
CDC2L2                0.018   cell division cycle 2-like 2 isoform 4 
CDC2L2                0.018   cell division cycle 2-like 2 isoform 1 
CDC2L1                0.018   cell division cycle 2-like 1 (PITSLRE proteins) isof...
CDC2L1                0.018   cell division cycle 2-like 1 (PITSLRE proteins) isof...
CDC2L1                0.018   cell division cycle 2-like 1 (PITSLRE proteins) isof...
CDC2L1                0.018   cell division cycle 2-like 1 (PITSLRE proteins) isof...
CDC2L1                0.018   cell division cycle 2-like 1 (PITSLRE proteins) isof...
CDC2L5                0.018   cell division cycle 2-like 5 isoform 1 
CDC2L5                0.018   cell division cycle 2-like 5 isoform 2 
FOXA2                 0.017   forkhead box A2 isoform 2 
DSPP                  0.017   dentin sialophosphoprotein preproprotein 
FOXA2                 0.017   forkhead box A2 isoform 1 
DACH2                 0.017   dachshund 2 isoform a 
SOX1                  0.016   SRY (sex determining region Y)-box 1 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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