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Search of human proteins with 239756163
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|239756163 PREDICTED: hypothetical protein [Homo sapiens]
(193 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|239756163 PREDICTED: hypothetical protein [Homo sapiens] 409 e-114
gi|239750683 PREDICTED: hypothetical protein XP_002347505 [Homo ... 409 e-114
gi|239744993 PREDICTED: hypothetical protein XP_002343324 [Homo ... 409 e-114
gi|169210256 PREDICTED: hypothetical protein [Homo sapiens] 47 1e-05
gi|40805823 collagen, type XXII, alpha 1 [Homo sapiens] 44 1e-04
gi|110225353 sprouty-related, EVH1 domain containing 3 isoform a... 43 1e-04
gi|117306167 proline-rich protein BstNI subfamily 3 precursor [H... 43 2e-04
gi|239746149 PREDICTED: hypothetical protein LOC80164 [Homo sapi... 42 2e-04
gi|4502951 collagen type III alpha 1 preproprotein [Homo sapiens] 42 4e-04
gi|239757130 PREDICTED: hypothetical protein FLJ22184 [Homo sapi... 42 4e-04
gi|148536823 type IV alpha 6 collagen isoform A precursor [Homo ... 42 4e-04
gi|18641360 collectin sub-family member 12 [Homo sapiens] 42 4e-04
gi|111118972 collagen, type XI, alpha 2 isoform 2 preproprotein ... 42 4e-04
gi|111118968 collagen, type XI, alpha 2 isoform 3 preproprotein ... 42 4e-04
gi|111118970 collagen, type XI, alpha 2 isoform 1 preproprotein ... 42 4e-04
gi|32140760 collagen, type XXVII, alpha 1 [Homo sapiens] 42 4e-04
gi|77681565 NG5 protein [Homo sapiens] 42 4e-04
gi|16357503 type IV alpha 6 collagen isoform B precursor [Homo s... 42 4e-04
gi|42542379 serine/arginine repetitive matrix 1 [Homo sapiens] 42 4e-04
gi|239748716 PREDICTED: hypothetical protein XP_002346782 [Homo ... 41 6e-04
gi|239742745 PREDICTED: hypothetical protein XP_002342616 [Homo ... 41 6e-04
gi|33598924 scavenger receptor class A, member 3 isoform 1 [Homo... 41 6e-04
gi|45120115 hypothetical protein LOC56905 [Homo sapiens] 41 7e-04
gi|110349772 alpha 1 type I collagen preproprotein [Homo sapiens] 40 0.001
gi|178557734 microtubule-associated protein tau isoform 6 [Homo ... 40 0.001
gi|15890086 type IV collagen alpha 5 isoform 2 precursor [Homo s... 40 0.001
gi|18079216 CASK interacting protein 1 [Homo sapiens] 40 0.002
gi|111118976 collagen, type II, alpha 1 isoform 1 precursor [Hom... 40 0.002
gi|111118974 collagen, type II, alpha 1 isoform 2 precursor [Hom... 40 0.002
gi|4502961 alpha 1 type VII collagen precursor [Homo sapiens] 40 0.002
>gi|239756163 PREDICTED: hypothetical protein [Homo sapiens]
Length = 193
Score = 409 bits (1050), Expect = e-114
Identities = 193/193 (100%), Positives = 193/193 (100%)
Query: 1 MPRDSPDQGESIRPRLPPRTRGVRTSPRMLVAPGQGHTRGVRRGVSPVAQADPAQDASSF 60
MPRDSPDQGESIRPRLPPRTRGVRTSPRMLVAPGQGHTRGVRRGVSPVAQADPAQDASSF
Sbjct: 1 MPRDSPDQGESIRPRLPPRTRGVRTSPRMLVAPGQGHTRGVRRGVSPVAQADPAQDASSF 60
Query: 61 SYSTPVQTATNPGPRHLRPETSSSKQHFRTKAPRNLSPPGRARSPRNGPPLLVSHTGFPS 120
SYSTPVQTATNPGPRHLRPETSSSKQHFRTKAPRNLSPPGRARSPRNGPPLLVSHTGFPS
Sbjct: 61 SYSTPVQTATNPGPRHLRPETSSSKQHFRTKAPRNLSPPGRARSPRNGPPLLVSHTGFPS 120
Query: 121 PNRPRPAPHLLGHRLRGPGGHKGPGPARGRPCPRCLPGLPGLPITHIRFPAAPLPPRLVA 180
PNRPRPAPHLLGHRLRGPGGHKGPGPARGRPCPRCLPGLPGLPITHIRFPAAPLPPRLVA
Sbjct: 121 PNRPRPAPHLLGHRLRGPGGHKGPGPARGRPCPRCLPGLPGLPITHIRFPAAPLPPRLVA 180
Query: 181 QVPSRPAAVLFPM 193
QVPSRPAAVLFPM
Sbjct: 181 QVPSRPAAVLFPM 193
>gi|239750683 PREDICTED: hypothetical protein XP_002347505 [Homo
sapiens]
Length = 193
Score = 409 bits (1050), Expect = e-114
Identities = 193/193 (100%), Positives = 193/193 (100%)
Query: 1 MPRDSPDQGESIRPRLPPRTRGVRTSPRMLVAPGQGHTRGVRRGVSPVAQADPAQDASSF 60
MPRDSPDQGESIRPRLPPRTRGVRTSPRMLVAPGQGHTRGVRRGVSPVAQADPAQDASSF
Sbjct: 1 MPRDSPDQGESIRPRLPPRTRGVRTSPRMLVAPGQGHTRGVRRGVSPVAQADPAQDASSF 60
Query: 61 SYSTPVQTATNPGPRHLRPETSSSKQHFRTKAPRNLSPPGRARSPRNGPPLLVSHTGFPS 120
SYSTPVQTATNPGPRHLRPETSSSKQHFRTKAPRNLSPPGRARSPRNGPPLLVSHTGFPS
Sbjct: 61 SYSTPVQTATNPGPRHLRPETSSSKQHFRTKAPRNLSPPGRARSPRNGPPLLVSHTGFPS 120
Query: 121 PNRPRPAPHLLGHRLRGPGGHKGPGPARGRPCPRCLPGLPGLPITHIRFPAAPLPPRLVA 180
PNRPRPAPHLLGHRLRGPGGHKGPGPARGRPCPRCLPGLPGLPITHIRFPAAPLPPRLVA
Sbjct: 121 PNRPRPAPHLLGHRLRGPGGHKGPGPARGRPCPRCLPGLPGLPITHIRFPAAPLPPRLVA 180
Query: 181 QVPSRPAAVLFPM 193
QVPSRPAAVLFPM
Sbjct: 181 QVPSRPAAVLFPM 193
>gi|239744993 PREDICTED: hypothetical protein XP_002343324 [Homo
sapiens]
Length = 193
Score = 409 bits (1050), Expect = e-114
Identities = 193/193 (100%), Positives = 193/193 (100%)
Query: 1 MPRDSPDQGESIRPRLPPRTRGVRTSPRMLVAPGQGHTRGVRRGVSPVAQADPAQDASSF 60
MPRDSPDQGESIRPRLPPRTRGVRTSPRMLVAPGQGHTRGVRRGVSPVAQADPAQDASSF
Sbjct: 1 MPRDSPDQGESIRPRLPPRTRGVRTSPRMLVAPGQGHTRGVRRGVSPVAQADPAQDASSF 60
Query: 61 SYSTPVQTATNPGPRHLRPETSSSKQHFRTKAPRNLSPPGRARSPRNGPPLLVSHTGFPS 120
SYSTPVQTATNPGPRHLRPETSSSKQHFRTKAPRNLSPPGRARSPRNGPPLLVSHTGFPS
Sbjct: 61 SYSTPVQTATNPGPRHLRPETSSSKQHFRTKAPRNLSPPGRARSPRNGPPLLVSHTGFPS 120
Query: 121 PNRPRPAPHLLGHRLRGPGGHKGPGPARGRPCPRCLPGLPGLPITHIRFPAAPLPPRLVA 180
PNRPRPAPHLLGHRLRGPGGHKGPGPARGRPCPRCLPGLPGLPITHIRFPAAPLPPRLVA
Sbjct: 121 PNRPRPAPHLLGHRLRGPGGHKGPGPARGRPCPRCLPGLPGLPITHIRFPAAPLPPRLVA 180
Query: 181 QVPSRPAAVLFPM 193
QVPSRPAAVLFPM
Sbjct: 181 QVPSRPAAVLFPM 193
>gi|169210256 PREDICTED: hypothetical protein [Homo sapiens]
Length = 447
Score = 46.6 bits (109), Expect = 1e-05
Identities = 39/113 (34%), Positives = 46/113 (40%), Gaps = 24/113 (21%)
Query: 79 PETSSSKQHFRTKAPRNLSPPGRARSPRNGPPLLVSHTGFPSPNRPRPAPHLLGHRLR-G 137
P TS+ + AP + PGRAR+PR+ PS PR +G R R G
Sbjct: 280 PRTSAGLAGVGSGAPGEPAEPGRARAPRSA----------PSSREPRQTKRRVGSRARAG 329
Query: 138 PGGHKGPGPARGR------PCPRCLPG------LPGLPITHIRFPAAPLPPRL 178
G GP PA + P PRCLP P H R PA PP L
Sbjct: 330 AGAVTGPCPAAAQGARGSWPSPRCLPSDGGAREAPPTSAPHPRRPAGS-PPAL 381
>gi|40805823 collagen, type XXII, alpha 1 [Homo sapiens]
Length = 1626
Score = 43.5 bits (101), Expect = 1e-04
Identities = 38/85 (44%), Positives = 40/85 (47%), Gaps = 17/85 (20%)
Query: 98 PPGRARSP-----RNGPPLLVSHTGFPSPNRPRPAPHLLGHRLRGPGGHKG-PGPARGRP 151
PPG AR P R+GPP L G P P LLG L+GP G G PGP P
Sbjct: 673 PPG-ARGPIGPEGRDGPPGLQGLRGKKGDMGPPGIPGLLG--LQGPPGPPGVPGP----P 725
Query: 152 CPRCLPGLPGLPITHIRFPAAPLPP 176
P PGLPG I FP P PP
Sbjct: 726 GPGGSPGLPG----EIGFPGKPGPP 746
Score = 35.8 bits (81), Expect = 0.023
Identities = 25/66 (37%), Positives = 27/66 (40%), Gaps = 7/66 (10%)
Query: 98 PPGRARSPRNGPPLLVSHTGFPSPNRPRPAPHLLGHRLRGPGGHKGPGPARGRPCPRCLP 157
PPG SP G P + G P P P P GP G GP +G P R
Sbjct: 724 PPGPGGSP--GLPGEIGFPGKPGPPGPTGPPGK-----DGPNGPPGPPGTKGEPGERGED 776
Query: 158 GLPGLP 163
GLPG P
Sbjct: 777 GLPGKP 782
Score = 33.5 bits (75), Expect = 0.12
Identities = 33/108 (30%), Positives = 36/108 (33%), Gaps = 17/108 (15%)
Query: 73 GPRHLRPETSSSKQHFRTKAPRNLSPPGRARSP-------RNGPPLLVSHTG---FPSPN 122
GP L + R P PG+A P GPP HTG P P
Sbjct: 1231 GPSGLPGIPGEEGKEGRDGKPGPPGEPGKAGEPGLPGPEGARGPPGFKGHTGDSGAPGPR 1290
Query: 123 RPRPAPHLLGHRL-------RGPGGHKGPGPARGRPCPRCLPGLPGLP 163
A L G GP G +GP RG P PG PG P
Sbjct: 1291 GESGAMGLPGQEGLPGKDGDTGPTGPQGPQGPRGPPGKNGSPGSPGEP 1338
Score = 32.3 bits (72), Expect = 0.26
Identities = 29/72 (40%), Positives = 32/72 (44%), Gaps = 12/72 (16%)
Query: 99 PGRARSPRNGPPLLVSHTGFPSPNRPRP---APHLLGHRLR-GPGGHKGPGPARGRPCP- 153
PG A +P G P H G P P+ P AP L G + G G KG G P P
Sbjct: 912 PGAAGNP--GAP---GHVGAPGPSGPPGSVGAPGLRGTPGKDGERGEKGAAGEEGSPGPV 966
Query: 154 --RCLPGLPGLP 163
R PG PGLP
Sbjct: 967 GPRGDPGAPGLP 978
Score = 30.8 bits (68), Expect = 0.75
Identities = 37/147 (25%), Positives = 45/147 (30%), Gaps = 22/147 (14%)
Query: 17 PPRTRGVRTSPRMLVAPGQGHTRGVRRGVSPVAQADPAQDASSFSYSTPVQTATNPGPRH 76
PP +G+R + PG G++ P P S + PGP
Sbjct: 688 PPGLQGLRGKKGDMGPPGIPGLLGLQGPPGPPGVPGPPGPGGSPGLPGEIGFPGKPGP-- 745
Query: 77 LRPETSSSKQHFRTKAPRNLSPPGRARSPRNGPPLLVSHTGFPSPNRPRPAPHLLGHRLR 136
P PPG+ NGPP G P P G LR
Sbjct: 746 ----------------PGPTGPPGK--DGPNGPPGPPGTKGEPGERGEDGLPGKPG--LR 785
Query: 137 GPGGHKGPGPARGRPCPRCLPGLPGLP 163
G G +G G LPG PG P
Sbjct: 786 GEIGEQGLAGRPGEKGEAGLPGAPGFP 812
Score = 30.4 bits (67), Expect = 0.98
Identities = 28/80 (35%), Positives = 31/80 (38%), Gaps = 14/80 (17%)
Query: 98 PPGRARSPRN-GPPLLVSHTGFPSPNRPRPAPHLLGHR-LRGPGGHKG------PGPAR- 148
PPG + P + G P GFP P P G+ RGP G G PG
Sbjct: 1049 PPGPSGPPGDKGSPGSRGLPGFPGPQGPAGRDGAPGNPGERGPPGKPGLSSLLSPGDINL 1108
Query: 149 -----GRPCPRCLPGLPGLP 163
CP PGLPGLP
Sbjct: 1109 LAKDVCNDCPPGPPGLPGLP 1128
Score = 30.0 bits (66), Expect = 1.3
Identities = 18/45 (40%), Positives = 20/45 (44%), Gaps = 3/45 (6%)
Query: 117 GFPSPNRPRPAPHLLGHRLRGPGGHKGPGPARGRPCPRCLPGLPG 161
G P R P G + GP G GP +G P R LPG PG
Sbjct: 1031 GIPGSPGSRGDP---GIGVAGPPGPSGPPGDKGSPGSRGLPGFPG 1072
Score = 30.0 bits (66), Expect = 1.3
Identities = 23/72 (31%), Positives = 27/72 (37%), Gaps = 8/72 (11%)
Query: 99 PGRARSP----RNGPPLLVSHTGFPSPNRPRPAPHLLGHR----LRGPGGHKGPGPARGR 150
PG+ P G P + G P P + GH+ L GP G G G
Sbjct: 1383 PGKPGEPGFKGERGDPGIKGDKGPPGGKGQPGDPGIPGHKGHTGLMGPQGLPGENGPVGP 1442
Query: 151 PCPRCLPGLPGL 162
P P PG PGL
Sbjct: 1443 PGPPGQPGFPGL 1454
Score = 29.6 bits (65), Expect = 1.7
Identities = 33/105 (31%), Positives = 34/105 (32%), Gaps = 18/105 (17%)
Query: 73 GPRHLRPETSSSKQHFRTKAPRNLSPPGRARSPR-NGPPLLVSHTGFPSPNRPRPAPHLL 131
GP L TS H R P P G P G P L G P P
Sbjct: 846 GPPGLPGTTSLFTPHPRM--PGEQGPKGEKGDPGLPGEPGLQGRPGELGPQGPT------ 897
Query: 132 GHRLRGPGGHKGPGPARGRPCPRCLPGLPGLPITHIRFPAAPLPP 176
GP G KG A G P PG PG H+ P PP
Sbjct: 898 -----GPPGAKGQEGAHGAPGAAGNPGAPG----HVGAPGPSGPP 933
Score = 28.9 bits (63), Expect = 2.8
Identities = 24/70 (34%), Positives = 28/70 (40%), Gaps = 9/70 (12%)
Query: 98 PPGRARSPRN----GPPLLVSHTGFPSPNRPRPAPHLLGHRLRGPGGHKGPGPARGRPCP 153
PPG+ SP + GP G N P LG R GP G G +G P
Sbjct: 1325 PPGKNGSPGSPGEPGPSGTPGQKGSKGENGSPGLPGFLGPR--GPPGEPGE---KGVPGK 1379
Query: 154 RCLPGLPGLP 163
+PG PG P
Sbjct: 1380 EGVPGKPGEP 1389
Score = 28.1 bits (61), Expect = 4.8
Identities = 25/77 (32%), Positives = 28/77 (36%), Gaps = 14/77 (18%)
Query: 98 PPGRARSP-RNGPPLLVSHTGFPS----------PNRPRPAPHLLGHRLRGPGGHKGPGP 146
PPGR S G P + G P P P P + L+G G KG
Sbjct: 540 PPGRDGSKGMRGEPGELGEPGLPGEVGMRGPQGPPGLPGPPGRVGAPGLQGERGEKG--- 596
Query: 147 ARGRPCPRCLPGLPGLP 163
RG R L G PG P
Sbjct: 597 TRGEKGERGLDGFPGKP 613
Score = 27.3 bits (59), Expect = 8.3
Identities = 23/68 (33%), Positives = 26/68 (38%), Gaps = 4/68 (5%)
Query: 99 PGRARSPRNGPPLLVSHTGFPSPNRPRPAPHLLGHR----LRGPGGHKGPGPARGRPCPR 154
PG SP + + G P P+ P G R GP G G A G P R
Sbjct: 1030 PGIPGSPGSRGDPGIGVAGPPGPSGPPGDKGSPGSRGLPGFPGPQGPAGRDGAPGNPGER 1089
Query: 155 CLPGLPGL 162
PG PGL
Sbjct: 1090 GPPGKPGL 1097
Score = 27.3 bits (59), Expect = 8.3
Identities = 20/55 (36%), Positives = 24/55 (43%), Gaps = 8/55 (14%)
Query: 115 HTGFPS----PNRPRP--APHLLGHRLRGPGGHKGPGPARGRPCPRCLPGLPGLP 163
H G P P P P A + G GP G +G G P P+ GLPG+P
Sbjct: 1187 HPGVPGFMGPPGNPGPPGADGIAG--AAGPPGIQGSPGKEGPPGPQGPSGLPGIP 1239
>gi|110225353 sprouty-related, EVH1 domain containing 3 isoform a
[Homo sapiens]
Length = 410
Score = 43.1 bits (100), Expect = 1e-04
Identities = 44/156 (28%), Positives = 57/156 (36%), Gaps = 28/156 (17%)
Query: 57 ASSFSYSTPVQ-TATNPGPRHLRPETSSSKQHFRTKAPRNLS-----------------P 98
+SS S S+P Q TA P P ++ SS H R + P + + P
Sbjct: 121 SSSSSSSSPSQDTAETPCPLTSHVDSDSSSSHSRQETPPSAAAAPIITMESASGFGPTTP 180
Query: 99 PGRARSPRNGPPLLVSHTGFPSPNRPRPAPHLLGHRLRGPGGHKGPGPARGRPCPRCL-- 156
P R RS P L+ TG P P+ P LG RG ++ GP C+
Sbjct: 181 PQRRRSSAQSYPPLLPFTGIPEPSEPLAGAGGLGWGGRGYEDYRRSGPPAPLALSTCVVR 240
Query: 157 ----PGLPGLPITHIRFPAAPLPPRLVAQVPSRPAA 188
L G + P A LP L P P A
Sbjct: 241 FAKTGALRGAALG----PPAALPAPLTEAAPPAPPA 272
>gi|117306167 proline-rich protein BstNI subfamily 3 precursor [Homo
sapiens]
Length = 309
Score = 42.7 bits (99), Expect = 2e-04
Identities = 49/183 (26%), Positives = 63/183 (34%), Gaps = 28/183 (15%)
Query: 2 PRDSPDQGESIRPRLPPRTRGVRTSPRMLVAPGQGHTRGVRRGVSPVAQADPAQDASSFS 61
P P QG + PPR G P P QG + P P + S
Sbjct: 120 PEGPPPQGGNQSQGPPPRP-GKPEGP-----PPQGGNQSQGPPPRPGKPEGPPPQGGNQS 173
Query: 62 YSTPVQTATNPGPRHLRPETSSSKQHFRTKAPRNLSPPGRARSPRNGPPLLVSHTGFPSP 121
P GP P+ + Q + + PP + + GPP P P
Sbjct: 174 QGPPPHPGKPEGPP---PQGGNQSQGPPPRPGKPEGPPPQGGNQSQGPP--------PRP 222
Query: 122 NRPRPAPHLLGHRLRGPGGH----KGPGPARG----RPCPRCLPGLPGLPITHIRFPAAP 173
+P P G++ +GP H +GP P G RP P PG P P P P
Sbjct: 223 GKPEGPPSQGGNKPQGPPPHPGKPQGPPPQEGNKPQRPPP---PGRPQGPPPPGGNPQQP 279
Query: 174 LPP 176
LPP
Sbjct: 280 LPP 282
>gi|239746149 PREDICTED: hypothetical protein LOC80164 [Homo
sapiens]
Length = 816
Score = 42.4 bits (98), Expect = 2e-04
Identities = 58/202 (28%), Positives = 73/202 (36%), Gaps = 27/202 (13%)
Query: 1 MPRDSPDQGESIRPRLP---PRTRGVRTSPRMLVAPGQGHTR------GVRRGVSPVAQA 51
+PR +P S RPR P PR S P R G++R S + +
Sbjct: 180 LPRPAP----SARPRPPTEGPRKSVSSASEHSTTEPSPAARRRPSAGGGLQRPASR-SLS 234
Query: 52 DPAQDASSFSYSTPVQTATNPGPRHLRPETSSSKQHFRTKAPRNLSPPGRARSPRNGPPL 111
A SS + S P T P H Q R P ++PP + +P GP L
Sbjct: 235 SSATPLSSPARSGPSARGTPRAPAHPSQPKPKGLQALR---PPQVTPPRKDAAPALGP-L 290
Query: 112 LVSHTGFPSPNRPRPAPHLLGHRLRGPGGHKGPGPARGRPCPRCLP-GLPGLPITHIRFP 170
S PSP+ P P+P P P P P G P L TH P
Sbjct: 291 SSSPLATPSPSAP-PSPSA------PPSLQTLPSPPATPPSQATTSLGSPTLQATHSFLP 343
Query: 171 AAPLPPRLVAQVPSRPAAVLFP 192
+ PL P L P P A+ P
Sbjct: 344 SPPLSP-LATPPPQAPPALALP 364
Score = 37.7 bits (86), Expect = 0.006
Identities = 45/182 (24%), Positives = 65/182 (35%), Gaps = 17/182 (9%)
Query: 15 RLPPRTRGVRTSPRMLVAPGQGHTRGVRRGVSPVAQADPAQDASSFSYSTPVQTATNPGP 74
R P RG +PR P Q +G++ + P P +DA+ P P
Sbjct: 245 RSGPSARG---TPRAPAHPSQPKPKGLQ-ALRPPQVTPPRKDAAPALGPLSSSPLATPSP 300
Query: 75 RHLRPETSSSKQHFRTKAPRNLSPPGRARSPRNGPPLLVSHTGFPSP-------NRPRPA 127
P + S+ +T +PP +A + P L +H+ PSP P+
Sbjct: 301 S--APPSPSAPPSLQTLPSPPATPPSQATTSLGSPTLQATHSFLPSPPLSPLATPPPQAP 358
Query: 128 PHLLGHRLRGPGGHKGPGPARGRPCPRCLPGLPGLPITH-IRFPAAPLPPRLVAQVPSRP 186
P L L+ P P P P P H ++ P +P PP Q P P
Sbjct: 359 PALALPPLQAPPSPPASPPLSPLATPS--PQAPNALAVHLLQAPFSP-PPSPPVQAPFSP 415
Query: 187 AA 188
A
Sbjct: 416 PA 417
>gi|4502951 collagen type III alpha 1 preproprotein [Homo sapiens]
Length = 1466
Score = 41.6 bits (96), Expect = 4e-04
Identities = 53/183 (28%), Positives = 64/183 (34%), Gaps = 26/183 (14%)
Query: 2 PRDSPDQGESIRPRLPPRTRGVRTSPRMLV---------APGQGHTRGVRRGVSPVAQAD 52
P QGES RP PP G R P ++ APG+ RG G P Q
Sbjct: 551 PGPPGSQGESGRPG-PPGPSGPRGQPGVMGFPGPKGNDGAPGKNGERGGPGGPGP--QGP 607
Query: 53 PAQDASSFSYSTPVQTATN--------PGPRHLRPETSSSKQHFRTKAPRNLSPPGRARS 104
P ++ + P T PGP+ L+ + P P G A +
Sbjct: 608 PGKNGETGPQGPPGPTGPGGDKGDTGPPGPQGLQGLPGTGGPPGENGKPGEPGPKGDAGA 667
Query: 105 PRNGPPLLVSHTGFPSPNRP---RPAPHLLGHR-LRGPGGHKGPGPARGRPCPRCLPGLP 160
P G P G P P AP L G GP G KG G P PGL
Sbjct: 668 P--GAPGGKGDAGAPGERGPPGLAGAPGLRGGAGPPGPEGGKGAAGPPGPPGAAGTPGLQ 725
Query: 161 GLP 163
G+P
Sbjct: 726 GMP 728
Score = 38.9 bits (89), Expect = 0.003
Identities = 55/181 (30%), Positives = 64/181 (35%), Gaps = 43/181 (23%)
Query: 2 PRDSPDQGESIRPRLPPRTR-----GVRTSPRMLVAPGQGHTRGVRRGVSPVAQADPAQD 56
PR +P GE RP LP G R S PG T G SP A+ +
Sbjct: 301 PRGAP--GERGRPGLPGAAGARGNDGARGSDGQPGPPGPPGTAGFPG--SPGAKGEVGPA 356
Query: 57 ASSFSYSTPVQTATNPGPRHLRPETSSSKQHFRTKAPRNLSPPGRARSPRN--------- 107
S S P Q PGP+ H + P PPG SP
Sbjct: 357 GSPGSNGAPGQRG-EPGPQG----------HAGAQGPPG--PPGINGSPGGKGEMGPAGI 403
Query: 108 -GPPLLVSHTGFPSPNRPRPAPHLLGHRLRGPGGHKGPGPARGRPCPR------CLPGLP 160
G P L+ G P P AP L RG G G A+G P PR +PG+P
Sbjct: 404 PGAPGLMGARGPPGPAGANGAPGL-----RGGAGEPGKNGAKGEPGPRGERGEAGIPGVP 458
Query: 161 G 161
G
Sbjct: 459 G 459
Score = 35.4 bits (80), Expect = 0.030
Identities = 26/71 (36%), Positives = 29/71 (40%), Gaps = 6/71 (8%)
Query: 93 PRNLSPPGRARSPR-NGPPLLVSHTGFPSPNRPRPAPHLLGHRLRGPGGHKGPGPARGRP 151
P PG SP GPP G P+ P P +G GP G G GRP
Sbjct: 185 PGTSGHPGSPGSPGYQGPP---GEPGQAGPSGPPGPPGAIGPS--GPAGKDGESGRPGRP 239
Query: 152 CPRCLPGLPGL 162
R LPG PG+
Sbjct: 240 GERGLPGPPGI 250
Score = 35.0 bits (79), Expect = 0.040
Identities = 28/74 (37%), Positives = 31/74 (41%), Gaps = 6/74 (8%)
Query: 94 RNLSPPGRARSPRNGP--PLLVSHTGFPSPNRPRP---APHLLGHR-LRGPGGHKGPGPA 147
R L P + P P P + H GF N + AP L G L G G GP
Sbjct: 242 RGLPGPPGIKGPAGIPGFPGMKGHRGFDGRNGEKGETGAPGLKGENGLPGENGAPGPMGP 301
Query: 148 RGRPCPRCLPGLPG 161
RG P R PGLPG
Sbjct: 302 RGAPGERGRPGLPG 315
Score = 35.0 bits (79), Expect = 0.040
Identities = 53/183 (28%), Positives = 71/183 (38%), Gaps = 31/183 (16%)
Query: 2 PRDSP-DQGESIRPRLPPRTRGVRTSPRMLVAPGQGHTRGVRRGVSPVAQADPAQDASSF 60
PR SP ++GE+ PP G +P PG +G R + P A
Sbjct: 793 PRGSPGERGETG----PPGPAGFPGAPGQNGEPGG---KGERGAPGEKGEGGPPGVAGPP 845
Query: 61 SYSTPVQTATNPGPRHLRPETSSSKQHFRTKAPR------------NLSPPGRARSP-RN 107
S P A PGP+ ++ E S P N PPG + SP ++
Sbjct: 846 GGSGP---AGPPGPQGVKGERGSPGGPGAAGFPGARGLPGPPGSNGNPGPPGPSGSPGKD 902
Query: 108 GPPLLVSHTGFP-SP--NRPRPAPHLLGHR----LRGPGGHKGPGPARGRPCPRCLPGLP 160
GPP +TG P SP + P+ G + +GP G GP G R L G P
Sbjct: 903 GPPGPAGNTGAPGSPGVSGPKGDAGQPGEKGSPGAQGPPGAPGPLGIAGITGARGLAGPP 962
Query: 161 GLP 163
G+P
Sbjct: 963 GMP 965
Score = 34.3 bits (77), Expect = 0.068
Identities = 29/94 (30%), Positives = 36/94 (38%), Gaps = 11/94 (11%)
Query: 72 PGPRHLRPETSSSKQHFRTKAPRNLSPPGRARSP-------RNGPPLLVSHTGFPSPNRP 124
PGP+ L ++ + R P + PGR SP NG P G P P P
Sbjct: 995 PGPQGLPGLAGTAGEPGRDGNPGSDGLPGRDGSPGGKGDRGENGSPGAPGAPGHPGPPGP 1054
Query: 125 RPAPHLLGHRLR----GPGGHKGPGPARGRPCPR 154
G R GP G GP +RG P P+
Sbjct: 1055 VGPAGKSGDRGESGPAGPAGAPGPAGSRGAPGPQ 1088
Score = 30.8 bits (68), Expect = 0.75
Identities = 21/66 (31%), Positives = 27/66 (40%), Gaps = 9/66 (13%)
Query: 121 PNRPRPAPHLLGHRLRGPGGHKGPGPARGRPCPRCLPGLPGLPITHIRFPAAPLPPRLVA 180
P P P+ G +GP G GP GR +PG PG P +P PP +
Sbjct: 92 PTAPTRPPN--GQGPQGPKGDPGPPGIPGRNGDPGIPGQPG-------SPGSPGPPGICE 142
Query: 181 QVPSRP 186
P+ P
Sbjct: 143 SCPTGP 148
Score = 30.8 bits (68), Expect = 0.75
Identities = 44/156 (28%), Positives = 53/156 (33%), Gaps = 11/156 (7%)
Query: 14 PRLPPRTRGVRTSPRMLVAPGQGHTRGVRRGVSPVAQADPAQDASSFSYSTPVQTATN-- 71
P P +G R SP A G RG+ P + S P A N
Sbjct: 853 PPGPQGVKGERGSPGGPGAAGFPGARGLPGPPGSNGNPGPPGPSGSPGKDGPPGPAGNTG 912
Query: 72 -PGPRHLRPETSSSKQHFRTKAPRNLSPPGRARSPRN-----GPPLLVSHTGFPSPNRPR 125
PG + + Q +P PPG A P G L G P P R
Sbjct: 913 APGSPGVSGPKGDAGQPGEKGSPGAQGPPG-APGPLGIAGITGARGLAGPPGMPGP-RGS 970
Query: 126 PAPHLLGHRLRGPGGHKGPGPARGRPCPRCLPGLPG 161
P P + PG + G RG P P+ LPGL G
Sbjct: 971 PGPQGVKGESGKPGAN-GLSGERGPPGPQGLPGLAG 1005
Score = 30.4 bits (67), Expect = 0.98
Identities = 24/73 (32%), Positives = 27/73 (36%), Gaps = 8/73 (10%)
Query: 98 PPGRARSPRN-GPPLLVSHTGFPSPN-------RPRPAPHLLGHRLRGPGGHKGPGPARG 149
PPG A P + G V G P N P P H GP G G +G
Sbjct: 337 PPGTAGFPGSPGAKGEVGPAGSPGSNGAPGQRGEPGPQGHAGAQGPPGPPGINGSPGGKG 396
Query: 150 RPCPRCLPGLPGL 162
P +PG PGL
Sbjct: 397 EMGPAGIPGAPGL 409
Score = 30.0 bits (66), Expect = 1.3
Identities = 24/68 (35%), Positives = 31/68 (45%), Gaps = 8/68 (11%)
Query: 97 SPPGRARSPRNGPPLLVSHTGF---PSPNRPRPAPHLLGHRLRGPGGHKGPGPARGRPCP 153
SP G + GPP +G P P+ PR P ++G GP G+ G A G+
Sbjct: 541 SPGGPGSDGKPGPPGSQGESGRPGPPGPSGPRGQPGVMG--FPGPKGNDG---APGKNGE 595
Query: 154 RCLPGLPG 161
R PG PG
Sbjct: 596 RGGPGGPG 603
Score = 29.3 bits (64), Expect = 2.2
Identities = 25/74 (33%), Positives = 29/74 (39%), Gaps = 8/74 (10%)
Query: 98 PPGRARSPR-NGPPLLVSHTGFPSPNRPRPAPHLLG-------HRLRGPGGHKGPGPARG 149
PPG A +P G P G P P + P G RGP G GP G
Sbjct: 715 PPGAAGTPGLQGMPGERGGLGSPGPKGDKGEPGGPGADGVPGKDGPRGPTGPIGPPGPAG 774
Query: 150 RPCPRCLPGLPGLP 163
+P + G PGLP
Sbjct: 775 QPGDKGEGGAPGLP 788
Score = 29.3 bits (64), Expect = 2.2
Identities = 46/172 (26%), Positives = 53/172 (30%), Gaps = 50/172 (29%)
Query: 21 RGVRTSPRMLVAPGQGHTRGVRRGVSPVAQADPAQDASSFSYSTPVQTATNPGPRHLRPE 80
RG SP APG P PA + S P A PGP R
Sbjct: 1034 RGENGSPGAPGAPGHP---------GPPGPVGPAGKSGDRGESGPAGPAGAPGPAGSRG- 1083
Query: 81 TSSSKQHFRTKAPRNLSPPG-RARSPRNGPPLLVSHTGFP----SPNRPRPAPHLLGHRL 135
AP P G + + G + H GFP +P P PA
Sbjct: 1084 -----------APGPQGPRGDKGETGERGAAGIKGHRGFPGNPGAPGSPGPAGQQGAIGS 1132
Query: 136 RGPGGHKGP-GPAR--------------GRPCPRC---------LPGLPGLP 163
GP G +GP GP+ G P PR PG PG P
Sbjct: 1133 PGPAGPRGPVGPSGPPGKDGTSGHPGPIGPPGPRGNRGERGSEGSPGHPGQP 1184
Score = 28.5 bits (62), Expect = 3.7
Identities = 31/101 (30%), Positives = 37/101 (36%), Gaps = 18/101 (17%)
Query: 72 PGPRHLRPETSSSKQHFRTKAPRNLSPPGRARSP----RNGPPLLVSHTGFPSPNRPRPA 127
PGPR R E P G+ SP NG P G P P
Sbjct: 443 PGPRGERGEAGIPG------VPGAKGEDGKDGSPGEPGANGLPGAAGERGAPGFRGPAGP 496
Query: 128 PHLLGHRLRGPGGHKG-PGP-----ARGRPCPRCLPGLPGL 162
+ G + GP G +G PGP A G P +PG PG+
Sbjct: 497 NGIPGEK--GPAGERGAPGPAGPRGAAGEPGRDGVPGGPGM 535
Score = 28.5 bits (62), Expect = 3.7
Identities = 24/65 (36%), Positives = 29/65 (44%), Gaps = 7/65 (10%)
Query: 99 PGRARSP--RNGPPLLVSHTGFPSPNRPRPAPHLLGHRLRGPGGHKGPGPARGRPCPRCL 156
P R P +GPP +G P P P P P G+R G G +G G+P P
Sbjct: 1135 PAGPRGPVGPSGPPGKDGTSGHPGPIGP-PGPR--GNR--GERGSEGSPGHPGQPGPPGP 1189
Query: 157 PGLPG 161
PG PG
Sbjct: 1190 PGAPG 1194
Score = 28.1 bits (61), Expect = 4.8
Identities = 22/59 (37%), Positives = 23/59 (38%), Gaps = 7/59 (11%)
Query: 112 LVSHTGFPSPNRPRPAPHLLGHR-LRGPGGHKGPGPARGR------PCPRCLPGLPGLP 163
L G P P PR AP G L G G +G ARG P P G PG P
Sbjct: 289 LPGENGAPGPMGPRGAPGERGRPGLPGAAGARGNDGARGSDGQPGPPGPPGTAGFPGSP 347
Score = 27.7 bits (60), Expect = 6.3
Identities = 20/54 (37%), Positives = 21/54 (38%), Gaps = 5/54 (9%)
Query: 108 GPPLLVSHTGFPSPNRPRPAPHLLGHRLRGPGGHKGPGPARGRPCPRCLPGLPG 161
GPP G P AP L G + GP G G G P P PG PG
Sbjct: 768 GPP---GPAGQPGDKGEGGAPGLPG--IAGPRGSPGERGETGPPGPAGFPGAPG 816
>gi|239757130 PREDICTED: hypothetical protein FLJ22184 [Homo
sapiens]
Length = 855
Score = 41.6 bits (96), Expect = 4e-04
Identities = 61/215 (28%), Positives = 80/215 (37%), Gaps = 34/215 (15%)
Query: 2 PRDSPDQ-GESIR--PRLP-----PRTRGVR-------TSPRMLVAPGQGHTRGVRRGV- 45
P SP + G S R PR P P+ +G++ T PR AP G
Sbjct: 248 PLSSPARSGPSARGTPRAPAHPSQPKPKGLQALRPPQVTPPRKDAAPALGPLSSSPLATP 307
Query: 46 SPVA----QADPAQDASSFSYSTPVQTATNPGPRHLRPETSSSKQHFRTKAPRNLSPPGR 101
SP A QA P A+ S S Q AT P L P + S+ +T +PP +
Sbjct: 308 SPSAALQSQAPPTLPATPHSSSLTCQLAT---PLPLAPPSPSAPPSLQTLPSPPATPPSQ 364
Query: 102 ARSPRNGPPLLVSHTGFPSP-------NRPRPAPHLLGHRLRGPGGHKGPGPARGRPCPR 154
A + P L +H+ PSP P+ P L L+ P P P
Sbjct: 365 ATTSLGSPTLQATHSFLPSPPLSPLATPPPQAPPALALPPLQAPPSPPASPPLSPLATPS 424
Query: 155 CLPGLPGLPITH-IRFPAAPLPPRLVAQVPSRPAA 188
P P H ++ P +P PP Q P P A
Sbjct: 425 --PQAPNALAVHLLQAPFSP-PPSPPVQAPFSPPA 456
Score = 35.8 bits (81), Expect = 0.023
Identities = 58/225 (25%), Positives = 75/225 (33%), Gaps = 43/225 (19%)
Query: 1 MPRDSPDQGESIRPRLP---PRTRGVRTSPRMLVAPGQGHTR------GVRRGVSPVAQA 51
+PR +P S RPR P PR S P R G++R S + +
Sbjct: 189 LPRPAP----SARPRPPTEGPRKSVSSASEHSTTEPSPAARRRPSAGGGLQRPASR-SLS 243
Query: 52 DPAQDASSFSYSTPVQTATNPGPRHLRPETSSSKQHFRTKAPRNLSPPGRARSPRNGPPL 111
A SS + S P T P H Q R P ++PP + +P GP L
Sbjct: 244 SSATPLSSPARSGPSARGTPRAPAHPSQPKPKGLQALR---PPQVTPPRKDAAPALGP-L 299
Query: 112 LVSHTGFPSPNRPRPA---------PHLLGHRLR-------GPGGHKGPGPARGRPCPRC 155
S PSP+ + PH + P P + P P
Sbjct: 300 SSSPLATPSPSAALQSQAPPTLPATPHSSSLTCQLATPLPLAPPSPSAPPSLQTLPSPPA 359
Query: 156 LP--------GLPGLPITHIRFPAAPLPPRLVAQVPSRPAAVLFP 192
P G P L TH P+ PL P L P P A+ P
Sbjct: 360 TPPSQATTSLGSPTLQATHSFLPSPPLSP-LATPPPQAPPALALP 403
>gi|148536823 type IV alpha 6 collagen isoform A precursor [Homo
sapiens]
Length = 1691
Score = 41.6 bits (96), Expect = 4e-04
Identities = 34/89 (38%), Positives = 38/89 (42%), Gaps = 8/89 (8%)
Query: 96 LSPPGRARSP-RNGPPLLVSHTGFPSPNRPRPAPHLLGHR-LRGPGGHKG-PGPA----- 147
+ P GRA +P G G PSP RP L G + +G G G PGP
Sbjct: 932 MGPSGRAGTPGEKGDRGNPGPVGIPSPRRPMSNLWLKGDKGSQGSAGSNGFPGPRGDKGE 991
Query: 148 RGRPCPRCLPGLPGLPITHIRFPAAPLPP 176
GRP P LPG PGLP P PP
Sbjct: 992 AGRPGPPGLPGAPGLPGIIKGVSGKPGPP 1020
Score = 31.2 bits (69), Expect = 0.57
Identities = 41/160 (25%), Positives = 59/160 (36%), Gaps = 19/160 (11%)
Query: 17 PPRTRGVRTSPRMLVA---------PGQGHTRGVRRGVS-PVAQADPAQDASSFSYSTPV 66
PP G+R P + + PG+ ++G+R P A P + V
Sbjct: 1019 PPGFMGIRGLPGLKGSSGITGFPGMPGESGSQGIRGSPGLPGASGLPGLKGDN---GQTV 1075
Query: 67 QTATNPGPRHLRPETSSSKQHFRTKAPRNLSPPGR----ARSPRNGPPLLVSHTGFPSPN 122
+ + +PGP+ E+ R N+ PG + +G L GFP
Sbjct: 1076 EISGSPGPKGQPGESGFKGTKGRDGLIGNIGFPGNKGEDGKVGVSGDVGLPGAPGFPGVA 1135
Query: 123 RPRPAPHLLGHRLRGPGGHKGPGPARGRPCPRCLPGLPGL 162
R P L G G G GP + G P+ PG PGL
Sbjct: 1136 GMRGEPGLPGSS--GHQGAIGPLGSPGLIGPKGFPGFPGL 1173
Score = 30.4 bits (67), Expect = 0.98
Identities = 21/71 (29%), Positives = 27/71 (38%), Gaps = 4/71 (5%)
Query: 93 PRNLSPPGRARSPRNGPPLLVSHTGFPSPNRPRPAPHLLGHRLRGPGGHKGPGPARGRPC 152
P L P G G + G P P P P+ L G KG ++G P
Sbjct: 210 PGPLGPDGNMGLGFQGEKGVKGDVGLPGPAGPPPSTG----ELEFMGFPKGKKGSKGEPG 265
Query: 153 PRCLPGLPGLP 163
P+ PG+ G P
Sbjct: 266 PKGFPGISGPP 276
Score = 30.0 bits (66), Expect = 1.3
Identities = 26/93 (27%), Positives = 35/93 (37%), Gaps = 15/93 (16%)
Query: 72 PGPRHLRPETSSSKQHFRTKAPRNLSPPGRARSP-RNGPPLLVSHTGFPSPNRPRPAPHL 130
PG + R + S AP + P G + + G P+L + G P
Sbjct: 509 PGLKGARGDRGSGGAQGPAGAPGLVGPLGPSGPKGKKGEPILSTIQGMPGD--------- 559
Query: 131 LGHRLRGPGGHKGPGPARGRPCPRCLPGLPGLP 163
RG G +G G P +PGLPGLP
Sbjct: 560 -----RGDSGSQGFRGVIGEPGKDGVPGLPGLP 587
Score = 28.9 bits (63), Expect = 2.8
Identities = 26/68 (38%), Positives = 26/68 (38%), Gaps = 14/68 (20%)
Query: 108 GPPLLVSHTGFPSPNRPRPAPHLLGHRLRGPGGHKG----PGPAR-----GRPCPRC--- 155
GP GFP P R P G G G KG PG G P PR
Sbjct: 664 GPSGFPGTPGFPGPKGSRGLPGTPGQP--GSSGSKGEPGSPGLVHLPELPGFPGPRGEKG 721
Query: 156 LPGLPGLP 163
LPG PGLP
Sbjct: 722 LPGFPGLP 729
Score = 28.9 bits (63), Expect = 2.8
Identities = 27/81 (33%), Positives = 30/81 (37%), Gaps = 12/81 (14%)
Query: 93 PRNLSPPGRARSPRNGPPLLVSHTGFPSPNRPRPAPHLLG----HRLRGPGGHKGPGPAR 148
P L P G SP G P V G P + P G G GH G R
Sbjct: 791 PGLLGPKGERGSP--GTPGQVGQPGTPGSSGPYGIKGKSGLPGAPGFPGISGHPGKKGTR 848
Query: 149 GRPCP------RCLPGLPGLP 163
G+ P + LPGL GLP
Sbjct: 849 GKKGPPGSIVKKGLPGLKGLP 869
Score = 28.1 bits (61), Expect = 4.8
Identities = 27/84 (32%), Positives = 31/84 (36%), Gaps = 6/84 (7%)
Query: 80 ETSSSKQHFRTKAPRNLSPPGRARSPRNGPPLLVSHTGFPSPNRPRPAPHLLGHRLRGPG 139
+ S S Q F K R P + P GP TG R P LLG P
Sbjct: 35 DCSGSCQCFPEKGARGRPGPIGIQGP-TGPQGFTGSTGLSGLKGERGFPGLLG-----PY 88
Query: 140 GHKGPGPARGRPCPRCLPGLPGLP 163
G KG G P + G+PG P
Sbjct: 89 GPKGDKGPMGVPGFLGINGIPGHP 112
Score = 28.1 bits (61), Expect = 4.8
Identities = 24/81 (29%), Positives = 31/81 (38%), Gaps = 16/81 (19%)
Query: 98 PPGRARSPRNGPPLLVSHTGFPSPNRPRPAPHLLGHR-------------LRGPGGHKGP 144
P + + GPP + G P P L+G + L GP G KG
Sbjct: 842 PGKKGTRGKKGPPGSIVKKGLPGLKGLPGNPGLVGLKGSPGSPGVAGLPALSGPKGEKGS 901
Query: 145 GPARGRPCPRCLPGLPGLPIT 165
G P +PGLPG+P T
Sbjct: 902 VGFVGFPG---IPGLPGIPGT 919
Score = 27.3 bits (59), Expect = 8.3
Identities = 18/46 (39%), Positives = 24/46 (52%), Gaps = 5/46 (10%)
Query: 116 TGFPSPNRPRPAPHLLGHRLRGPGGHKGPGPARGRPCPRCLPGLPG 161
+G P P P L G L+GP G +G A G+ P +PG+PG
Sbjct: 1421 SGLPGPPGALGDPGLPG--LQGPPGFEG---APGQQGPFGMPGMPG 1461
>gi|18641360 collectin sub-family member 12 [Homo sapiens]
Length = 742
Score = 41.6 bits (96), Expect = 4e-04
Identities = 49/177 (27%), Positives = 61/177 (34%), Gaps = 28/177 (15%)
Query: 17 PPRTRGVRTSPRMLVAPGQGHTRGVRRGVSPVAQADPAQDASSFSYSTPVQTATNPGPRH 76
PP RG R PG +G + PA + P+ A PG R
Sbjct: 444 PPGPRGPRGDRGSQGPPGPTGNKGQKGEKGEPGPPGPAGERG------PIGPAGPPGERG 497
Query: 77 LRPETSSSKQHFRTKAPRNLSPPGRARSPRNGPPLLVSHTGFPSPNRPRPAPHLLGHRLR 136
+ S +P P G + P GPP G P P P P G L+
Sbjct: 498 GKGSKGSQGPKGSRGSPGKPGPQGPSGDP--GPPGPPGKEGLPGPQGP---PGFQG--LQ 550
Query: 137 GPGGHKGPGPARGRPCPRCLPGLPGLPITHIRFPAAPLPPRLVAQVPSRPAAVLFPM 193
G G G P PR LPGLPG+P P PP P P+ + P+
Sbjct: 551 GTVGEPGV------PGPRGLPGLPGVP----GMPGPKGPPG-----PPGPSGAVVPL 592
>gi|111118972 collagen, type XI, alpha 2 isoform 2 preproprotein [Homo
sapiens]
Length = 1650
Score = 41.6 bits (96), Expect = 4e-04
Identities = 49/160 (30%), Positives = 57/160 (35%), Gaps = 12/160 (7%)
Query: 7 DQGESIRPRLP--PRTRGVRTSPRMLVAPGQGHTRGVR-RGVSPVAQADPAQDASSFSYS 63
D+GE P P P G P L G + G R A+ DP +
Sbjct: 1206 DRGEDGEPGQPGSPGPTGENGPPGPLGKRGPAGSPGSEGRQGGKGAKGDPGAIGAPGKTG 1265
Query: 64 T--PVQTATNPGPRHLRPETSSSKQHFRTKAPRNLSPPGRARSPRNGPPLLVSHTGFPSP 121
P A PGP LR S Q R A PPG GPP L G
Sbjct: 1266 PVGPAGPAGKPGPDGLRGLPGSVGQQGRPGATGQAGPPGPV-----GPPGLPGLRGDAGA 1320
Query: 122 NRPRPAPHLLGHRLRGPGGHKGPGPARGRPCPRCLPGLPG 161
+ P L+G L GP G +G RG P P+ PG G
Sbjct: 1321 KGEKGHPGLIG--LIGPPGEQGEKGDRGLPGPQGSPGQKG 1358
Score = 40.0 bits (92), Expect = 0.001
Identities = 41/133 (30%), Positives = 50/133 (37%), Gaps = 13/133 (9%)
Query: 33 PGQGHTRGVRRGVSPVAQADPAQDASSFSYSTPVQTATN--PGPRHLRPETSSSKQHFRT 90
PG+G RG A+ D +D +P T N PGP R S R
Sbjct: 1192 PGEGGPRG-----QDGAKGDRGEDGEPGQPGSPGPTGENGPPGPLGKRGPAGSPGSEGRQ 1246
Query: 91 KAPRNLSPPGRARSP-RNGPPLLVSHTGFPSPNRPRPAPHLLGHRLRGPGGHKGPGPARG 149
PG +P + GP G P P+ R P +G + R PG GP
Sbjct: 1247 GGKGAKGDPGAIGAPGKTGPVGPAGPAGKPGPDGLRGLPGSVGQQGR-PGATGQAGP--- 1302
Query: 150 RPCPRCLPGLPGL 162
P P PGLPGL
Sbjct: 1303 -PGPVGPPGLPGL 1314
Score = 37.4 bits (85), Expect = 0.008
Identities = 33/93 (35%), Positives = 40/93 (43%), Gaps = 8/93 (8%)
Query: 73 GPRHLRPETSSSKQHFRTKAPRNL-SPPG-RARSPRNGPPLLVSHTGFPSPNRPRPAPHL 130
GPR L P S + K P + PPG R GP + G P P + P
Sbjct: 512 GPRGL-PGESGPRGLLGPKGPPGIPGPPGVRGMDGPQGPKGSLGPQGEPGPPGQQGTPGT 570
Query: 131 LGHRLRGPGGHKGPGPARGRPCPRCLPGLPGLP 163
G L GP G GP +G P+ PGLPG+P
Sbjct: 571 QG--LPGPQGAIGPHGEKG---PQGKPGLPGMP 598
Score = 37.0 bits (84), Expect = 0.010
Identities = 40/141 (28%), Positives = 48/141 (34%), Gaps = 10/141 (7%)
Query: 32 APGQGHTRGVRRGVSPVAQAD---PAQDASSFSYSTPVQTATNPGPRHLRPETSSSKQHF 88
A G TRG P+ P+ + P+ PGPR +
Sbjct: 1053 AKGDEGTRGFNGPPGPIGLQGLPGPSGEKGETGDVGPMGPPGPPGPRGPAGPNGADGPQG 1112
Query: 89 RTKAPRNLSPPGRARSP-RNGPPLLVSHTGFPSPNRPRPAPHLLGHRLR-GPGGHKGP-- 144
NL PPG P +G P + G P R G GP G KGP
Sbjct: 1113 PPGGVGNLGPPGEKGEPGESGSPGIQGEPGVKGPRGERGEKGESGQPGEPGPPGPKGPTG 1172
Query: 145 --GPARGRPCPRCLPGLPGLP 163
GP +G P P PG PG P
Sbjct: 1173 DDGP-KGNPGPVGFPGDPGPP 1192
Score = 35.0 bits (79), Expect = 0.040
Identities = 25/68 (36%), Positives = 29/68 (42%), Gaps = 4/68 (5%)
Query: 98 PPGRARSPRNGPPLLVSHTGFPSPNRPRPAPHLLGHRLRGPGGHKGPGPARGRPCPRCLP 157
PPG+ P G P GF P P ++G + G G GP RG P P P
Sbjct: 810 PPGKDGLP--GHPGQRGEVGFQGKTGPPGPPGVVGPQ--GAAGETGPMGERGHPGPPGPP 865
Query: 158 GLPGLPIT 165
G GLP T
Sbjct: 866 GEQGLPGT 873
Score = 32.3 bits (72), Expect = 0.26
Identities = 24/67 (35%), Positives = 29/67 (43%), Gaps = 3/67 (4%)
Query: 96 LSPPGRARSP-RNGPPLLVSHTGFPSPNRPRPAPHLLGHRLRGPGGHKGPGPARGRPCPR 154
L PG P R GP + GFP + + A L G GP G +GP RG+ PR
Sbjct: 709 LGVPGLPGYPGRQGPKGSLGFPGFPGASGEKGARGLSGKS--GPRGERGPTGPRGQRGPR 766
Query: 155 CLPGLPG 161
G G
Sbjct: 767 GATGKSG 773
Score = 30.4 bits (67), Expect = 0.98
Identities = 27/73 (36%), Positives = 32/73 (43%), Gaps = 10/73 (13%)
Query: 101 RARSPRNGPPLLVSHTGFPSPNRPRPAPHLLGHR-------LRGPGGHKG-PGPA--RGR 150
+AR GPP + +TG P P +P L G RGP G G PG A RGR
Sbjct: 394 QARLALRGPPGPMGYTGRPGPLGQPGSPGLKGESGDLGPQGPRGPQGLTGPPGKAGRRGR 453
Query: 151 PCPRCLPGLPGLP 163
G+PG P
Sbjct: 454 AGADGARGMPGDP 466
Score = 28.5 bits (62), Expect = 3.7
Identities = 38/131 (29%), Positives = 51/131 (38%), Gaps = 27/131 (20%)
Query: 78 RPETSSSKQHFRTKAPRNLSPPGRARSPRNGPPLLVSHTGFP---SPNRPR--------P 126
R + S +Q R P+N P + +P +L S P + + PR P
Sbjct: 243 RAQRSPQQQPSRLHRPQNQEPQSQDPTPGEEEEILESSLLPPLEEAAHGPRGLKGEKGEP 302
Query: 127 APHLLGHRLRGPGGHKGP----GPA--RGRPCP------RCLPGLPGLPITHIRFPAAPL 174
A G + GP G +GP GP +G P P R PG GLP + AP
Sbjct: 303 AVLEPGMLVEGPPGPEGPAGLIGPPGIQGNPGPVGDPGERGPPGRAGLPGS----DGAPG 358
Query: 175 PPRLVAQVPSR 185
PP +P R
Sbjct: 359 PPGTSLMLPFR 369
Score = 28.1 bits (61), Expect = 4.8
Identities = 46/167 (27%), Positives = 56/167 (33%), Gaps = 37/167 (22%)
Query: 22 GVRTSPRMLVAPGQGHTRGVR--RGVS-------PVAQADPAQDASSFSYSTPVQTATNP 72
G SP + PG RG R +G S P P D PV +P
Sbjct: 1130 GESGSPGIQGEPGVKGPRGERGEKGESGQPGEPGPPGPKGPTGDDGPKGNPGPVGFPGDP 1189
Query: 73 GPRHLRPETSSSKQHFRTKAPRNLS-PPGRARSP----RNGPPLLVSHTGFPSPNRPRPA 127
GP P + K R PG+ SP NGPP + G P +
Sbjct: 1190 GP----PGEGGPRGQDGAKGDRGEDGEPGQPGSPGPTGENGPPGPLGKRG------PAGS 1239
Query: 128 PHLLGHR-----------LRGPG--GHKGPGPARGRPCPRCLPGLPG 161
P G + + PG G GP G+P P L GLPG
Sbjct: 1240 PGSEGRQGGKGAKGDPGAIGAPGKTGPVGPAGPAGKPGPDGLRGLPG 1286
Score = 27.7 bits (60), Expect = 6.3
Identities = 24/77 (31%), Positives = 27/77 (35%), Gaps = 11/77 (14%)
Query: 98 PPG----RARSPRNGPPLLVSHTGFPSPNRPRPAPHLLGHRLR-------GPGGHKGPGP 146
PPG + + GP H G P P + P G G G GP
Sbjct: 837 PPGVVGPQGAAGETGPMGERGHPGPPGPPGEQGLPGTAGKEGTKGDPGPPGAPGKDGPAG 896
Query: 147 ARGRPCPRCLPGLPGLP 163
RG P R LPG G P
Sbjct: 897 LRGFPGERGLPGTAGGP 913
>gi|111118968 collagen, type XI, alpha 2 isoform 3 preproprotein [Homo
sapiens]
Length = 1629
Score = 41.6 bits (96), Expect = 4e-04
Identities = 49/160 (30%), Positives = 57/160 (35%), Gaps = 12/160 (7%)
Query: 7 DQGESIRPRLP--PRTRGVRTSPRMLVAPGQGHTRGVR-RGVSPVAQADPAQDASSFSYS 63
D+GE P P P G P L G + G R A+ DP +
Sbjct: 1185 DRGEDGEPGQPGSPGPTGENGPPGPLGKRGPAGSPGSEGRQGGKGAKGDPGAIGAPGKTG 1244
Query: 64 T--PVQTATNPGPRHLRPETSSSKQHFRTKAPRNLSPPGRARSPRNGPPLLVSHTGFPSP 121
P A PGP LR S Q R A PPG GPP L G
Sbjct: 1245 PVGPAGPAGKPGPDGLRGLPGSVGQQGRPGATGQAGPPGPV-----GPPGLPGLRGDAGA 1299
Query: 122 NRPRPAPHLLGHRLRGPGGHKGPGPARGRPCPRCLPGLPG 161
+ P L+G L GP G +G RG P P+ PG G
Sbjct: 1300 KGEKGHPGLIG--LIGPPGEQGEKGDRGLPGPQGSPGQKG 1337
Score = 40.0 bits (92), Expect = 0.001
Identities = 41/133 (30%), Positives = 50/133 (37%), Gaps = 13/133 (9%)
Query: 33 PGQGHTRGVRRGVSPVAQADPAQDASSFSYSTPVQTATN--PGPRHLRPETSSSKQHFRT 90
PG+G RG A+ D +D +P T N PGP R S R
Sbjct: 1171 PGEGGPRG-----QDGAKGDRGEDGEPGQPGSPGPTGENGPPGPLGKRGPAGSPGSEGRQ 1225
Query: 91 KAPRNLSPPGRARSP-RNGPPLLVSHTGFPSPNRPRPAPHLLGHRLRGPGGHKGPGPARG 149
PG +P + GP G P P+ R P +G + R PG GP
Sbjct: 1226 GGKGAKGDPGAIGAPGKTGPVGPAGPAGKPGPDGLRGLPGSVGQQGR-PGATGQAGP--- 1281
Query: 150 RPCPRCLPGLPGL 162
P P PGLPGL
Sbjct: 1282 -PGPVGPPGLPGL 1293
Score = 37.4 bits (85), Expect = 0.008
Identities = 33/93 (35%), Positives = 40/93 (43%), Gaps = 8/93 (8%)
Query: 73 GPRHLRPETSSSKQHFRTKAPRNL-SPPG-RARSPRNGPPLLVSHTGFPSPNRPRPAPHL 130
GPR L P S + K P + PPG R GP + G P P + P
Sbjct: 491 GPRGL-PGESGPRGLLGPKGPPGIPGPPGVRGMDGPQGPKGSLGPQGEPGPPGQQGTPGT 549
Query: 131 LGHRLRGPGGHKGPGPARGRPCPRCLPGLPGLP 163
G L GP G GP +G P+ PGLPG+P
Sbjct: 550 QG--LPGPQGAIGPHGEKG---PQGKPGLPGMP 577
Score = 37.0 bits (84), Expect = 0.010
Identities = 40/141 (28%), Positives = 48/141 (34%), Gaps = 10/141 (7%)
Query: 32 APGQGHTRGVRRGVSPVAQAD---PAQDASSFSYSTPVQTATNPGPRHLRPETSSSKQHF 88
A G TRG P+ P+ + P+ PGPR +
Sbjct: 1032 AKGDEGTRGFNGPPGPIGLQGLPGPSGEKGETGDVGPMGPPGPPGPRGPAGPNGADGPQG 1091
Query: 89 RTKAPRNLSPPGRARSP-RNGPPLLVSHTGFPSPNRPRPAPHLLGHRLR-GPGGHKGP-- 144
NL PPG P +G P + G P R G GP G KGP
Sbjct: 1092 PPGGVGNLGPPGEKGEPGESGSPGIQGEPGVKGPRGERGEKGESGQPGEPGPPGPKGPTG 1151
Query: 145 --GPARGRPCPRCLPGLPGLP 163
GP +G P P PG PG P
Sbjct: 1152 DDGP-KGNPGPVGFPGDPGPP 1171
Score = 35.0 bits (79), Expect = 0.040
Identities = 25/68 (36%), Positives = 29/68 (42%), Gaps = 4/68 (5%)
Query: 98 PPGRARSPRNGPPLLVSHTGFPSPNRPRPAPHLLGHRLRGPGGHKGPGPARGRPCPRCLP 157
PPG+ P G P GF P P ++G + G G GP RG P P P
Sbjct: 789 PPGKDGLP--GHPGQRGEVGFQGKTGPPGPPGVVGPQ--GAAGETGPMGERGHPGPPGPP 844
Query: 158 GLPGLPIT 165
G GLP T
Sbjct: 845 GEQGLPGT 852
Score = 33.1 bits (74), Expect = 0.15
Identities = 36/120 (30%), Positives = 45/120 (37%), Gaps = 26/120 (21%)
Query: 78 RPETSSSKQHFRTKAPRNLSPPGRARSPRNGPPLLVSHTGFPSPNRPR------PAPHLL 131
R + S +Q R P+N P +A +GP L G P+ P P P
Sbjct: 243 RAQRSPQQQPSRLHRPQNQEPQSQAA---HGPRGLKGEKGEPAVLEPGMLVEGPPGPE-- 297
Query: 132 GHRLRGPGGHKGPGPARGRPCP------RCLPGLPGLPITHIRFPAAPLPPRLVAQVPSR 185
GP G GP +G P P R PG GLP + AP PP +P R
Sbjct: 298 -----GPAGLIGPPGIQGNPGPVGDPGERGPPGRAGLPGS----DGAPGPPGTSLMLPFR 348
Score = 32.3 bits (72), Expect = 0.26
Identities = 24/67 (35%), Positives = 29/67 (43%), Gaps = 3/67 (4%)
Query: 96 LSPPGRARSP-RNGPPLLVSHTGFPSPNRPRPAPHLLGHRLRGPGGHKGPGPARGRPCPR 154
L PG P R GP + GFP + + A L G GP G +GP RG+ PR
Sbjct: 688 LGVPGLPGYPGRQGPKGSLGFPGFPGASGEKGARGLSGKS--GPRGERGPTGPRGQRGPR 745
Query: 155 CLPGLPG 161
G G
Sbjct: 746 GATGKSG 752
Score = 30.4 bits (67), Expect = 0.98
Identities = 27/73 (36%), Positives = 32/73 (43%), Gaps = 10/73 (13%)
Query: 101 RARSPRNGPPLLVSHTGFPSPNRPRPAPHLLGHR-------LRGPGGHKG-PGPA--RGR 150
+AR GPP + +TG P P +P L G RGP G G PG A RGR
Sbjct: 373 QARLALRGPPGPMGYTGRPGPLGQPGSPGLKGESGDLGPQGPRGPQGLTGPPGKAGRRGR 432
Query: 151 PCPRCLPGLPGLP 163
G+PG P
Sbjct: 433 AGADGARGMPGDP 445
Score = 28.1 bits (61), Expect = 4.8
Identities = 46/167 (27%), Positives = 56/167 (33%), Gaps = 37/167 (22%)
Query: 22 GVRTSPRMLVAPGQGHTRGVR--RGVS-------PVAQADPAQDASSFSYSTPVQTATNP 72
G SP + PG RG R +G S P P D PV +P
Sbjct: 1109 GESGSPGIQGEPGVKGPRGERGEKGESGQPGEPGPPGPKGPTGDDGPKGNPGPVGFPGDP 1168
Query: 73 GPRHLRPETSSSKQHFRTKAPRNLS-PPGRARSP----RNGPPLLVSHTGFPSPNRPRPA 127
GP P + K R PG+ SP NGPP + G P +
Sbjct: 1169 GP----PGEGGPRGQDGAKGDRGEDGEPGQPGSPGPTGENGPPGPLGKRG------PAGS 1218
Query: 128 PHLLGHR-----------LRGPG--GHKGPGPARGRPCPRCLPGLPG 161
P G + + PG G GP G+P P L GLPG
Sbjct: 1219 PGSEGRQGGKGAKGDPGAIGAPGKTGPVGPAGPAGKPGPDGLRGLPG 1265
Score = 27.7 bits (60), Expect = 6.3
Identities = 24/77 (31%), Positives = 27/77 (35%), Gaps = 11/77 (14%)
Query: 98 PPG----RARSPRNGPPLLVSHTGFPSPNRPRPAPHLLGHRLR-------GPGGHKGPGP 146
PPG + + GP H G P P + P G G G GP
Sbjct: 816 PPGVVGPQGAAGETGPMGERGHPGPPGPPGEQGLPGTAGKEGTKGDPGPPGAPGKDGPAG 875
Query: 147 ARGRPCPRCLPGLPGLP 163
RG P R LPG G P
Sbjct: 876 LRGFPGERGLPGTAGGP 892
>gi|111118970 collagen, type XI, alpha 2 isoform 1 preproprotein [Homo
sapiens]
Length = 1736
Score = 41.6 bits (96), Expect = 4e-04
Identities = 49/160 (30%), Positives = 57/160 (35%), Gaps = 12/160 (7%)
Query: 7 DQGESIRPRLP--PRTRGVRTSPRMLVAPGQGHTRGVR-RGVSPVAQADPAQDASSFSYS 63
D+GE P P P G P L G + G R A+ DP +
Sbjct: 1292 DRGEDGEPGQPGSPGPTGENGPPGPLGKRGPAGSPGSEGRQGGKGAKGDPGAIGAPGKTG 1351
Query: 64 T--PVQTATNPGPRHLRPETSSSKQHFRTKAPRNLSPPGRARSPRNGPPLLVSHTGFPSP 121
P A PGP LR S Q R A PPG GPP L G
Sbjct: 1352 PVGPAGPAGKPGPDGLRGLPGSVGQQGRPGATGQAGPPGPV-----GPPGLPGLRGDAGA 1406
Query: 122 NRPRPAPHLLGHRLRGPGGHKGPGPARGRPCPRCLPGLPG 161
+ P L+G L GP G +G RG P P+ PG G
Sbjct: 1407 KGEKGHPGLIG--LIGPPGEQGEKGDRGLPGPQGSPGQKG 1444
Score = 40.0 bits (92), Expect = 0.001
Identities = 41/133 (30%), Positives = 50/133 (37%), Gaps = 13/133 (9%)
Query: 33 PGQGHTRGVRRGVSPVAQADPAQDASSFSYSTPVQTATN--PGPRHLRPETSSSKQHFRT 90
PG+G RG A+ D +D +P T N PGP R S R
Sbjct: 1278 PGEGGPRG-----QDGAKGDRGEDGEPGQPGSPGPTGENGPPGPLGKRGPAGSPGSEGRQ 1332
Query: 91 KAPRNLSPPGRARSP-RNGPPLLVSHTGFPSPNRPRPAPHLLGHRLRGPGGHKGPGPARG 149
PG +P + GP G P P+ R P +G + R PG GP
Sbjct: 1333 GGKGAKGDPGAIGAPGKTGPVGPAGPAGKPGPDGLRGLPGSVGQQGR-PGATGQAGP--- 1388
Query: 150 RPCPRCLPGLPGL 162
P P PGLPGL
Sbjct: 1389 -PGPVGPPGLPGL 1400
Score = 37.4 bits (85), Expect = 0.008
Identities = 33/93 (35%), Positives = 40/93 (43%), Gaps = 8/93 (8%)
Query: 73 GPRHLRPETSSSKQHFRTKAPRNL-SPPG-RARSPRNGPPLLVSHTGFPSPNRPRPAPHL 130
GPR L P S + K P + PPG R GP + G P P + P
Sbjct: 598 GPRGL-PGESGPRGLLGPKGPPGIPGPPGVRGMDGPQGPKGSLGPQGEPGPPGQQGTPGT 656
Query: 131 LGHRLRGPGGHKGPGPARGRPCPRCLPGLPGLP 163
G L GP G GP +G P+ PGLPG+P
Sbjct: 657 QG--LPGPQGAIGPHGEKG---PQGKPGLPGMP 684
Score = 37.0 bits (84), Expect = 0.010
Identities = 40/141 (28%), Positives = 48/141 (34%), Gaps = 10/141 (7%)
Query: 32 APGQGHTRGVRRGVSPVAQAD---PAQDASSFSYSTPVQTATNPGPRHLRPETSSSKQHF 88
A G TRG P+ P+ + P+ PGPR +
Sbjct: 1139 AKGDEGTRGFNGPPGPIGLQGLPGPSGEKGETGDVGPMGPPGPPGPRGPAGPNGADGPQG 1198
Query: 89 RTKAPRNLSPPGRARSP-RNGPPLLVSHTGFPSPNRPRPAPHLLGHRLR-GPGGHKGP-- 144
NL PPG P +G P + G P R G GP G KGP
Sbjct: 1199 PPGGVGNLGPPGEKGEPGESGSPGIQGEPGVKGPRGERGEKGESGQPGEPGPPGPKGPTG 1258
Query: 145 --GPARGRPCPRCLPGLPGLP 163
GP +G P P PG PG P
Sbjct: 1259 DDGP-KGNPGPVGFPGDPGPP 1278
Score = 35.0 bits (79), Expect = 0.040
Identities = 25/68 (36%), Positives = 29/68 (42%), Gaps = 4/68 (5%)
Query: 98 PPGRARSPRNGPPLLVSHTGFPSPNRPRPAPHLLGHRLRGPGGHKGPGPARGRPCPRCLP 157
PPG+ P G P GF P P ++G + G G GP RG P P P
Sbjct: 896 PPGKDGLP--GHPGQRGEVGFQGKTGPPGPPGVVGPQ--GAAGETGPMGERGHPGPPGPP 951
Query: 158 GLPGLPIT 165
G GLP T
Sbjct: 952 GEQGLPGT 959
Score = 32.3 bits (72), Expect = 0.26
Identities = 24/67 (35%), Positives = 29/67 (43%), Gaps = 3/67 (4%)
Query: 96 LSPPGRARSP-RNGPPLLVSHTGFPSPNRPRPAPHLLGHRLRGPGGHKGPGPARGRPCPR 154
L PG P R GP + GFP + + A L G GP G +GP RG+ PR
Sbjct: 795 LGVPGLPGYPGRQGPKGSLGFPGFPGASGEKGARGLSGKS--GPRGERGPTGPRGQRGPR 852
Query: 155 CLPGLPG 161
G G
Sbjct: 853 GATGKSG 859
Score = 30.4 bits (67), Expect = 0.98
Identities = 27/73 (36%), Positives = 32/73 (43%), Gaps = 10/73 (13%)
Query: 101 RARSPRNGPPLLVSHTGFPSPNRPRPAPHLLGHR-------LRGPGGHKG-PGPA--RGR 150
+AR GPP + +TG P P +P L G RGP G G PG A RGR
Sbjct: 480 QARLALRGPPGPMGYTGRPGPLGQPGSPGLKGESGDLGPQGPRGPQGLTGPPGKAGRRGR 539
Query: 151 PCPRCLPGLPGLP 163
G+PG P
Sbjct: 540 AGADGARGMPGDP 552
Score = 28.1 bits (61), Expect = 4.8
Identities = 42/129 (32%), Positives = 50/129 (38%), Gaps = 22/129 (17%)
Query: 59 SFSYSTPVQTATNPGPRHLRPETSSSKQHFRTKAPRNLSPPGRARSPRN-GPPLLVSHTG 117
++ Y + T GP L ET+ S PR L G P P +LV G
Sbjct: 347 TYGYGDDYREETELGPA-LSAETAHSGA--AAHGPRGLK--GEKGEPAVLEPGMLVE--G 399
Query: 118 FPSPNRPRPAPHLLGHRLRGPGGHKG-PGPARGRPCPRCLPGLPGLPITHIRFPAAPLPP 176
P P P L GP G +G PGP G P R PG GLP + AP PP
Sbjct: 400 PPGPEGPAG--------LIGPPGIQGNPGPV-GDPGERGPPGRAGLPGS----DGAPGPP 446
Query: 177 RLVAQVPSR 185
+P R
Sbjct: 447 GTSLMLPFR 455
Score = 28.1 bits (61), Expect = 4.8
Identities = 46/167 (27%), Positives = 56/167 (33%), Gaps = 37/167 (22%)
Query: 22 GVRTSPRMLVAPGQGHTRGVR--RGVS-------PVAQADPAQDASSFSYSTPVQTATNP 72
G SP + PG RG R +G S P P D PV +P
Sbjct: 1216 GESGSPGIQGEPGVKGPRGERGEKGESGQPGEPGPPGPKGPTGDDGPKGNPGPVGFPGDP 1275
Query: 73 GPRHLRPETSSSKQHFRTKAPRNLS-PPGRARSP----RNGPPLLVSHTGFPSPNRPRPA 127
GP P + K R PG+ SP NGPP + G P +
Sbjct: 1276 GP----PGEGGPRGQDGAKGDRGEDGEPGQPGSPGPTGENGPPGPLGKRG------PAGS 1325
Query: 128 PHLLGHR-----------LRGPG--GHKGPGPARGRPCPRCLPGLPG 161
P G + + PG G GP G+P P L GLPG
Sbjct: 1326 PGSEGRQGGKGAKGDPGAIGAPGKTGPVGPAGPAGKPGPDGLRGLPG 1372
Score = 27.7 bits (60), Expect = 6.3
Identities = 24/77 (31%), Positives = 27/77 (35%), Gaps = 11/77 (14%)
Query: 98 PPG----RARSPRNGPPLLVSHTGFPSPNRPRPAPHLLGHRLR-------GPGGHKGPGP 146
PPG + + GP H G P P + P G G G GP
Sbjct: 923 PPGVVGPQGAAGETGPMGERGHPGPPGPPGEQGLPGTAGKEGTKGDPGPPGAPGKDGPAG 982
Query: 147 ARGRPCPRCLPGLPGLP 163
RG P R LPG G P
Sbjct: 983 LRGFPGERGLPGTAGGP 999
>gi|32140760 collagen, type XXVII, alpha 1 [Homo sapiens]
Length = 1860
Score = 41.6 bits (96), Expect = 4e-04
Identities = 57/206 (27%), Positives = 72/206 (34%), Gaps = 49/206 (23%)
Query: 17 PPRTRGVRTSPRMLVAPGQGHTRGVRRGVSPVAQADPAQDASSFSYSTPVQTATNPGPRH 76
PP + +SP AP G TR R P A P +S + P P
Sbjct: 481 PPPFTALSSSP----APTPGSTRSTR----PPATMVPPTSGTSTPRTAPAVPTPGSAPTG 532
Query: 77 LRPETSS--SKQHFRTKAPRNLSPPGRARSPRNGPPLLVSHTGFPSPNRPRPAP------ 128
+ S SK+ +PR P ++ R+ P L T PSP +P+P+
Sbjct: 533 SKKPIGSEASKKAGPKSSPRKPVPLRPGKAARDVP--LSDLTTRPSPRQPQPSQQTTPAL 590
Query: 129 ----------------------HLLGHR----LRGPGGHKGPGPARGRPCPRCLPGLPGL 162
HL G L GP G KG G P P LPGLPG+
Sbjct: 591 VLAPAQFLSSSPRPTSSGYSIFHLAGSTPFPLLMGPPGPKGDC---GLPGPPGLPGLPGI 647
Query: 163 PITHIRFPAAPLPPRLVAQVPSRPAA 188
P R P P P +P P A
Sbjct: 648 P--GARGPRGPPGPYGNPGLPGPPGA 671
Score = 33.9 bits (76), Expect = 0.088
Identities = 47/154 (30%), Positives = 61/154 (39%), Gaps = 25/154 (16%)
Query: 17 PPRTRGVRTSPRMLVAPGQGHTRGVRRGVSPVAQADPAQ-----DASSFSYSTPVQTATN 71
PP +G P L PG+ T G R G+ P Q +P D+ +
Sbjct: 1488 PPGFKGESGLPGQLGPPGKRGTEG-RTGL-PGNQGEPGSKGQPGDSGEMGFPGMAGLFGP 1545
Query: 72 PGPRHLRPETSSSKQHFRTKAPRNLSPPG-RARSPRNGPPLLVSHTGFPSPNRPRPAPHL 130
GP P K + PR PPG + GP ++ +G P P + +
Sbjct: 1546 KGP----PGDIGFKG---IQGPRG--PPGLMGKEGIVGPLGILGPSGLPGPKGDKGSRGD 1596
Query: 131 LGHRLRGPGGHKGPGPARGRPCPRCLPGLPGLPI 164
G L+GP G GP RGRP P PG PG PI
Sbjct: 1597 WG--LQGPRGPPGP---RGRPGP---PGPPGGPI 1622
Score = 31.2 bits (69), Expect = 0.57
Identities = 28/95 (29%), Positives = 36/95 (37%), Gaps = 14/95 (14%)
Query: 72 PGPRHLRPETSSSKQHFRT------KAPRNLSPPGRARSPRNGPPLLVSHTGFPSPNRPR 125
P R L P TSSSK+ T K + S P AR+ + PP + + P+P
Sbjct: 438 PSTRPLPPTTSSSKKPIPTLARTEAKITSHASKPASARTSTHKPPPFTALSSSPAPTPG- 496
Query: 126 PAPHLLGHRLRGPGGHKGPGPARGRPCPRCLPGLP 160
R P P P G PR P +P
Sbjct: 497 ------STRSTRPPATMVP-PTSGTSTPRTAPAVP 524
Score = 31.2 bits (69), Expect = 0.57
Identities = 18/45 (40%), Positives = 21/45 (46%), Gaps = 5/45 (11%)
Query: 117 GFPSPNRPRPAPHLLGHRLRGPGGHKGPGPARGRPCPRCLPGLPG 161
GFP P P P +G P G GP +G+P R LPG G
Sbjct: 901 GFPGPPGPEGFPGDIG-----PPGDNGPEGMKGKPGARGLPGPRG 940
Score = 30.4 bits (67), Expect = 0.98
Identities = 26/79 (32%), Positives = 31/79 (39%), Gaps = 8/79 (10%)
Query: 93 PRNLSPPGRA-----RSPR--NGPPLLVSHTGFPSPNRPRPAPHLLGHR-LRGPGGHKGP 144
P + PPG R PR +GP G P P+ P G + + G GH G
Sbjct: 1050 PGSRGPPGMRGAKGRRGPRGPDGPAGEQGSRGLKGPPGPQGRPGRPGQQGVAGERGHLGS 1109
Query: 145 GPARGRPCPRCLPGLPGLP 163
G P P PG GLP
Sbjct: 1110 RGFPGIPGPSGPPGTKGLP 1128
Score = 29.6 bits (65), Expect = 1.7
Identities = 41/157 (26%), Positives = 57/157 (36%), Gaps = 15/157 (9%)
Query: 17 PPRTRGVRTSPRMLVAPGQGHTRGVRRGVSPVAQADPAQDASSFSYSTPVQTATNPGPR- 75
PP +G + P + +PG+ H P +P P A +PG +
Sbjct: 668 PPGAKGQKGDPGL--SPGKAHDGAKGDMGLPGLSGNPGPPGRKGHKGYP-GPAGHPGEQG 724
Query: 76 HLRPETSSSKQHF--RTKAPRNLSPPGRARSPRNGPPLLVSHTGFPSPNRPRPAPHLLGH 133
PE S + + R P + PG S G L G P + R P + G
Sbjct: 725 QPGPEGSPGAKGYPGRQGLPGPVGDPGPKGS--RGYIGLPGLFGLPGSDGERGLPGVPGK 782
Query: 134 RLR-------GPGGHKGPGPARGRPCPRCLPGLPGLP 163
R + G G +GP G P LPG PG+P
Sbjct: 783 RGKMGMPGFPGVFGERGPPGLDGNPGELGLPGPPGVP 819
Score = 29.6 bits (65), Expect = 1.7
Identities = 25/85 (29%), Positives = 33/85 (38%), Gaps = 24/85 (28%)
Query: 96 LSPPGRARSPRNGPPLLVSHTGFP----SPNRPRPA--------PHLLGHRLR------- 136
+ PPG GP + H G P +P P P P + G + R
Sbjct: 1017 MGPPGVP-----GPKGSMGHPGMPGGMGTPGEPGPQGPPGSRGPPGMRGAKGRRGPRGPD 1071
Query: 137 GPGGHKGPGPARGRPCPRCLPGLPG 161
GP G +G +G P P+ PG PG
Sbjct: 1072 GPAGEQGSRGLKGPPGPQGRPGRPG 1096
Score = 29.6 bits (65), Expect = 1.7
Identities = 40/148 (27%), Positives = 53/148 (35%), Gaps = 31/148 (20%)
Query: 14 PRLPPRTRGVRTSPRMLVAPGQGHTRGVRRGVSPVAQADPAQDASSFSYSTPVQTATNPG 73
P+ PP +RG PG +G RRG P PA + S P PG
Sbjct: 1046 PQGPPGSRG---------PPGMRGAKG-RRG--PRGPDGPAGEQGSRGLKGPPGPQGRPG 1093
Query: 74 PRHLRPETSSSKQHFRTKAPRNLSPPGRARSPRNGPPLLVSHTGFPSPNRPRPAPHLLGH 133
R + + + H ++ + P +GPP G P P P+
Sbjct: 1094 -RPGQQGVAGERGHLGSRGFPGIPGP-------SGPPGTKGLPGEPGPQGPQGPI----- 1140
Query: 134 RLRGPGGHKGPGPARGRPCPRCLPGLPG 161
GP G GP +G P PGLPG
Sbjct: 1141 ---GPPGEMGP---KGPPGAVGEPGLPG 1162
Score = 28.5 bits (62), Expect = 3.7
Identities = 22/70 (31%), Positives = 28/70 (40%), Gaps = 7/70 (10%)
Query: 93 PRNLSPPGRARSPRNGPPLLVSHTGFPSPNRPRPAPHLLGHRLRGPGGHKGPGPARGRPC 152
P ++ PPG NGP + G + P P L GP G G G+P
Sbjct: 912 PGDIGPPGD-----NGPEGMKGKPG--ARGLPGPRGQLGPEGDEGPMGPPGAPGLEGQPG 964
Query: 153 PRCLPGLPGL 162
+ PG PGL
Sbjct: 965 RKGFPGRPGL 974
Score = 27.7 bits (60), Expect = 6.3
Identities = 52/193 (26%), Positives = 66/193 (34%), Gaps = 36/193 (18%)
Query: 2 PRDSPDQGESIRP--RLPPRTRGVRTSPRMLVA---PGQGHTRGVRRGVSPVAQADPAQD 56
P +P S RP + P T G T PR A PG T G ++ + A + A
Sbjct: 491 PAPTPGSTRSTRPPATMVPPTSGTST-PRTAPAVPTPGSAPT-GSKKPIGSEA-SKKAGP 547
Query: 57 ASSFSYSTPVQTA------------TNPGPRHLRPETSSSKQ------HFRTKAPRNLSP 98
SS P++ T P PR +P ++ F + +PR S
Sbjct: 548 KSSPRKPVPLRPGKAARDVPLSDLTTRPSPRQPQPSQQTTPALVLAPAQFLSSSPRPTSS 607
Query: 99 -------PGRARSPR-NGPPLLVSHTGFPSPNRPRPAPHLLGHRLRGPGGHKGPGPARGR 150
G P GPP G P P P + G RGP G GP G
Sbjct: 608 GYSIFHLAGSTPFPLLMGPPGPKGDCGLPGPPGLPGLPGIPG--ARGPRGPPGPYGNPGL 665
Query: 151 PCPRCLPGLPGLP 163
P P G G P
Sbjct: 666 PGPPGAKGQKGDP 678
Score = 27.7 bits (60), Expect = 6.3
Identities = 21/57 (36%), Positives = 21/57 (36%), Gaps = 1/57 (1%)
Query: 108 GPPLLVSHTGFPSPNRPRPAPHLLGHR-LRGPGGHKGPGPARGRPCPRCLPGLPGLP 163
GP G P N P G R L GP G GP G P PGL G P
Sbjct: 907 GPEGFPGDIGPPGDNGPEGMKGKPGARGLPGPRGQLGPEGDEGPMGPPGAPGLEGQP 963
>gi|77681565 NG5 protein [Homo sapiens]
Length = 306
Score = 41.6 bits (96), Expect = 4e-04
Identities = 44/147 (29%), Positives = 49/147 (33%), Gaps = 29/147 (19%)
Query: 52 DPAQDASSFSYSTPVQTATNPGPRHLRPETSSSKQHFRTKAPRNLSPPGRARSPRNGPPL 111
D S Y+ P A P P P+ + S H + G A PR G
Sbjct: 10 DSVPHTSPPPYNAPQPPAEPPAPP---PQAAPSSHHHHH---HHYHQSGTATLPRLGAGG 63
Query: 112 LVSHTGFP------SPNRPRPAPHLLGHRLRGPGGHKGPGPARGRPCPRC-----LPGLP 160
L S S PRP PH H PGPA G P P C +P P
Sbjct: 64 LASSAATAQRGPSSSATLPRP-PH-----------HAPPGPAAGAPPPGCATLPRMPPDP 111
Query: 161 GLPITHIRFPAAPLPPRLVAQVPSRPA 187
L T P P PP A P PA
Sbjct: 112 YLQETRFEGPLPPPPPAAAAPPPPAPA 138
>gi|16357503 type IV alpha 6 collagen isoform B precursor [Homo
sapiens]
Length = 1690
Score = 41.6 bits (96), Expect = 4e-04
Identities = 34/89 (38%), Positives = 38/89 (42%), Gaps = 8/89 (8%)
Query: 96 LSPPGRARSP-RNGPPLLVSHTGFPSPNRPRPAPHLLGHR-LRGPGGHKG-PGPA----- 147
+ P GRA +P G G PSP RP L G + +G G G PGP
Sbjct: 931 MGPSGRAGTPGEKGDRGNPGPVGIPSPRRPMSNLWLKGDKGSQGSAGSNGFPGPRGDKGE 990
Query: 148 RGRPCPRCLPGLPGLPITHIRFPAAPLPP 176
GRP P LPG PGLP P PP
Sbjct: 991 AGRPGPPGLPGAPGLPGIIKGVSGKPGPP 1019
Score = 31.2 bits (69), Expect = 0.57
Identities = 41/160 (25%), Positives = 59/160 (36%), Gaps = 19/160 (11%)
Query: 17 PPRTRGVRTSPRMLVA---------PGQGHTRGVRRGVS-PVAQADPAQDASSFSYSTPV 66
PP G+R P + + PG+ ++G+R P A P + V
Sbjct: 1018 PPGFMGIRGLPGLKGSSGITGFPGMPGESGSQGIRGSPGLPGASGLPGLKGDN---GQTV 1074
Query: 67 QTATNPGPRHLRPETSSSKQHFRTKAPRNLSPPGR----ARSPRNGPPLLVSHTGFPSPN 122
+ + +PGP+ E+ R N+ PG + +G L GFP
Sbjct: 1075 EISGSPGPKGQPGESGFKGTKGRDGLIGNIGFPGNKGEDGKVGVSGDVGLPGAPGFPGVA 1134
Query: 123 RPRPAPHLLGHRLRGPGGHKGPGPARGRPCPRCLPGLPGL 162
R P L G G G GP + G P+ PG PGL
Sbjct: 1135 GMRGEPGLPGSS--GHQGAIGPLGSPGLIGPKGFPGFPGL 1172
Score = 30.4 bits (67), Expect = 0.98
Identities = 21/71 (29%), Positives = 27/71 (38%), Gaps = 4/71 (5%)
Query: 93 PRNLSPPGRARSPRNGPPLLVSHTGFPSPNRPRPAPHLLGHRLRGPGGHKGPGPARGRPC 152
P L P G G + G P P P P+ L G KG ++G P
Sbjct: 209 PGPLGPDGNMGLGFQGEKGVKGDVGLPGPAGPPPSTG----ELEFMGFPKGKKGSKGEPG 264
Query: 153 PRCLPGLPGLP 163
P+ PG+ G P
Sbjct: 265 PKGFPGISGPP 275
Score = 30.0 bits (66), Expect = 1.3
Identities = 26/93 (27%), Positives = 35/93 (37%), Gaps = 15/93 (16%)
Query: 72 PGPRHLRPETSSSKQHFRTKAPRNLSPPGRARSP-RNGPPLLVSHTGFPSPNRPRPAPHL 130
PG + R + S AP + P G + + G P+L + G P
Sbjct: 508 PGLKGARGDRGSGGAQGPAGAPGLVGPLGPSGPKGKKGEPILSTIQGMPGD--------- 558
Query: 131 LGHRLRGPGGHKGPGPARGRPCPRCLPGLPGLP 163
RG G +G G P +PGLPGLP
Sbjct: 559 -----RGDSGSQGFRGVIGEPGKDGVPGLPGLP 586
Score = 28.9 bits (63), Expect = 2.8
Identities = 26/68 (38%), Positives = 26/68 (38%), Gaps = 14/68 (20%)
Query: 108 GPPLLVSHTGFPSPNRPRPAPHLLGHRLRGPGGHKG----PGPAR-----GRPCPRC--- 155
GP GFP P R P G G G KG PG G P PR
Sbjct: 663 GPSGFPGTPGFPGPKGSRGLPGTPGQP--GSSGSKGEPGSPGLVHLPELPGFPGPRGEKG 720
Query: 156 LPGLPGLP 163
LPG PGLP
Sbjct: 721 LPGFPGLP 728
Score = 28.9 bits (63), Expect = 2.8
Identities = 27/81 (33%), Positives = 30/81 (37%), Gaps = 12/81 (14%)
Query: 93 PRNLSPPGRARSPRNGPPLLVSHTGFPSPNRPRPAPHLLG----HRLRGPGGHKGPGPAR 148
P L P G SP G P V G P + P G G GH G R
Sbjct: 790 PGLLGPKGERGSP--GTPGQVGQPGTPGSSGPYGIKGKSGLPGAPGFPGISGHPGKKGTR 847
Query: 149 GRPCP------RCLPGLPGLP 163
G+ P + LPGL GLP
Sbjct: 848 GKKGPPGSIVKKGLPGLKGLP 868
Score = 28.1 bits (61), Expect = 4.8
Identities = 27/84 (32%), Positives = 31/84 (36%), Gaps = 6/84 (7%)
Query: 80 ETSSSKQHFRTKAPRNLSPPGRARSPRNGPPLLVSHTGFPSPNRPRPAPHLLGHRLRGPG 139
+ S S Q F K R P + P GP TG R P LLG P
Sbjct: 34 DCSGSCQCFPEKGARGRPGPIGIQGP-TGPQGFTGSTGLSGLKGERGFPGLLG-----PY 87
Query: 140 GHKGPGPARGRPCPRCLPGLPGLP 163
G KG G P + G+PG P
Sbjct: 88 GPKGDKGPMGVPGFLGINGIPGHP 111
Score = 28.1 bits (61), Expect = 4.8
Identities = 24/81 (29%), Positives = 31/81 (38%), Gaps = 16/81 (19%)
Query: 98 PPGRARSPRNGPPLLVSHTGFPSPNRPRPAPHLLGHR-------------LRGPGGHKGP 144
P + + GPP + G P P L+G + L GP G KG
Sbjct: 841 PGKKGTRGKKGPPGSIVKKGLPGLKGLPGNPGLVGLKGSPGSPGVAGLPALSGPKGEKGS 900
Query: 145 GPARGRPCPRCLPGLPGLPIT 165
G P +PGLPG+P T
Sbjct: 901 VGFVGFPG---IPGLPGIPGT 918
Score = 27.3 bits (59), Expect = 8.3
Identities = 18/46 (39%), Positives = 24/46 (52%), Gaps = 5/46 (10%)
Query: 116 TGFPSPNRPRPAPHLLGHRLRGPGGHKGPGPARGRPCPRCLPGLPG 161
+G P P P L G L+GP G +G A G+ P +PG+PG
Sbjct: 1420 SGLPGPPGALGDPGLPG--LQGPPGFEG---APGQQGPFGMPGMPG 1460
>gi|42542379 serine/arginine repetitive matrix 1 [Homo sapiens]
Length = 904
Score = 41.6 bits (96), Expect = 4e-04
Identities = 35/118 (29%), Positives = 45/118 (38%), Gaps = 24/118 (20%)
Query: 69 ATNPGPRHLRPETSSSKQHFRTKAPRNLSPPGRARSPRNGPPLLVSHTGFPSPNRPRPAP 128
+ +P PR + ETS + R+ +P P R RSP PP T P P R P+P
Sbjct: 528 SASPSPRKRQKETSPRGRRRRSPSP---PPTRRRRSPSPAPPPRRRRTPTPPPRRRTPSP 584
Query: 129 HLLGHRLRGPGGHKGPGPARGRPCPRCLPGLPGLPITHIRFPAAPLPPRLVAQVPSRP 186
P + P P R P PI R+ +P P R A P P
Sbjct: 585 ---------PPRRRSPSPRRYSP-----------PIQR-RYSPSPPPKRRTASPPPPP 621
Score = 36.2 bits (82), Expect = 0.018
Identities = 54/203 (26%), Positives = 67/203 (33%), Gaps = 34/203 (16%)
Query: 2 PRDSPDQGESIRPRLPPRTRGVRTSPRMLVAPGQGHTRGVRRGVSPVAQADPAQDASSFS 61
P +P P PPR R PR RR SP + P Q S S
Sbjct: 561 PSPAPPPRRRRTPTPPPRRRTPSPPPR-------------RRSPSPRRYSPPIQRRYSPS 607
Query: 62 YSTPVQTATNPGPRHLRPETSSSKQHFRTKAPRNLSPPGRARSP---RNGPPLLVSHTGF 118
+TA+ P P R S + + +P PP + SP R P L H
Sbjct: 608 PPPKRRTASPPPPPKRRASPSPPPKRRVSHSP----PPKQRSSPVTKRRSPSLSSKHRKG 663
Query: 119 PSPNR-------PRP-APHLLGHRLRGPGGHKGPGPAR----GRPCPRCLPGLPGLPITH 166
SP+R P+P H R R P P P R P R P PI
Sbjct: 664 SSPSRSTREARSPQPNKRHSPSPRPRAPQTSSSPPPVRRGASSSPQRRQSPSPSTRPIR- 722
Query: 167 IRFPAAPLPPRLVAQVPSRPAAV 189
R P P ++ P +V
Sbjct: 723 -RVSRTPEPKKIKKAASPSPQSV 744
Score = 34.3 bits (77), Expect = 0.068
Identities = 39/124 (31%), Positives = 53/124 (42%), Gaps = 12/124 (9%)
Query: 5 SPDQGESIRPRLPPRTRGVRTSPRMLVAPGQGHTRGVRRGVSPVAQADPAQDASSFSYST 64
SP + S R R PR R T PR + P + RR SPV + + + S S S+
Sbjct: 310 SPRRRPSPRRRPSPRRR---TPPRRMPPPPRH-----RRSRSPVRRRRRSSASLSGSSSS 361
Query: 65 PVQTATNPGPRHLRPETSSSKQHFRTKAPRNLSPPGRAR--SPRNGPPLLVSHTGFP-SP 121
+ + P+ TSS + R +P + SPP R SP PP H+ P
Sbjct: 362 SSSSRSRSPPKKPPKRTSSPPRKTRRLSP-SASPPRRRHRPSPPATPPPKTRHSPTPQQS 420
Query: 122 NRPR 125
NR R
Sbjct: 421 NRTR 424
Score = 32.3 bits (72), Expect = 0.26
Identities = 36/114 (31%), Positives = 45/114 (39%), Gaps = 18/114 (15%)
Query: 18 PRTRGVRTSPRMLVAPGQGHTRGVRRGVSPVAQADPAQDASSFSYSTPVQTATNPGPRHL 77
PR R TSPR G R R SP P + S S + P + P P
Sbjct: 533 PRKRQKETSPR-------GRRR---RSPSP----PPTRRRRSPSPAPPPRRRRTPTPPPR 578
Query: 78 RPETSSSKQHFRTKAPRNLSPPGRARSPRNGPPLLVSHTGFPSPNR---PRPAP 128
R T S R+ +PR SPP + R + PP + + P P R P P P
Sbjct: 579 R-RTPSPPPRRRSPSPRRYSPPIQRRYSPSPPPKRRTASPPPPPKRRASPSPPP 631
Score = 30.0 bits (66), Expect = 1.3
Identities = 43/180 (23%), Positives = 60/180 (33%), Gaps = 14/180 (7%)
Query: 5 SPDQGESIRPRLPPRTRGVRTSPRMLVAPGQGHTRGVRRGVSPVAQADPAQDASSFSYST 64
SP + PP+ R + R + H +G S P +
Sbjct: 628 SPPPKRRVSHSPPPKQRSSPVTKRRSPSLSSKHRKGSSPSRSTREARSPQPNKRHSPSPR 687
Query: 65 PVQTATNPGPRHLRPETSSSKQHFRTKAPRNLSPPGRARSPRNGPPLLVSHTGFPSPNRP 124
P T+ P +R SSS Q R ++P + P R R R P + PSP
Sbjct: 688 PRAPQTSSSPPPVRRGASSSPQ--RRQSPSPSTRPIR-RVSRTPEPKKIKKAASPSPQSV 744
Query: 125 RPAPHLLGHRLRG---PGGHKGPGPARGRPCPRCLPGL---PGLPITHIRFPA-APLPPR 177
R + G P K P P P P P +P+ + P +P PPR
Sbjct: 745 RRVSS--SRSVSGSPEPAAKKPPAPP--SPVQSQSPSTNWSPAVPVKKAKSPTPSPSPPR 800
>gi|239748716 PREDICTED: hypothetical protein XP_002346782 [Homo
sapiens]
Length = 267
Score = 41.2 bits (95), Expect = 6e-04
Identities = 43/128 (33%), Positives = 53/128 (41%), Gaps = 18/128 (14%)
Query: 18 PRTRGVRTSPRMLVA--PGQGHTRGVRRGVSPVAQADPAQDASSFSYSTPVQTATNPGPR 75
P TRG + R A PG G R G SP Q F+ P+Q TN
Sbjct: 144 PETRGGVPARRRETANPPGPGRARP---GGSPFGHRPLLQPRQIFA---PLQAITNQVRP 197
Query: 76 HLRPETSSSKQHFRTKAPRNLSPPGRARSPRNGPPLLVSHTGFPSPNR----PRPAPHLL 131
RPE + R+ R PGR RSP++ P + +G S +R PR AP
Sbjct: 198 QQRPEPPPAGSAARSG--RRAQRPGRKRSPQSAP----AESGELSIDREEGGPRQAPQGA 251
Query: 132 GHRLRGPG 139
GH L G G
Sbjct: 252 GHALEGRG 259
>gi|239742745 PREDICTED: hypothetical protein XP_002342616 [Homo
sapiens]
Length = 248
Score = 41.2 bits (95), Expect = 6e-04
Identities = 43/128 (33%), Positives = 53/128 (41%), Gaps = 18/128 (14%)
Query: 18 PRTRGVRTSPRMLVA--PGQGHTRGVRRGVSPVAQADPAQDASSFSYSTPVQTATNPGPR 75
P TRG + R A PG G R G SP Q F+ P+Q TN
Sbjct: 125 PETRGGVPARRRETANPPGPGRARP---GGSPFGHRPLLQPRQIFA---PLQAITNQVRP 178
Query: 76 HLRPETSSSKQHFRTKAPRNLSPPGRARSPRNGPPLLVSHTGFPSPNR----PRPAPHLL 131
RPE + R+ R PGR RSP++ P + +G S +R PR AP
Sbjct: 179 QQRPEPPPAGSAARSG--RRAQRPGRKRSPQSAP----AESGELSIDREEGGPRQAPQGA 232
Query: 132 GHRLRGPG 139
GH L G G
Sbjct: 233 GHALEGRG 240
>gi|33598924 scavenger receptor class A, member 3 isoform 1 [Homo
sapiens]
Length = 606
Score = 41.2 bits (95), Expect = 6e-04
Identities = 43/154 (27%), Positives = 57/154 (37%), Gaps = 24/154 (15%)
Query: 17 PPRTRGVRTSPRMLVAPGQGHTRGVRRGVSPVAQADPAQDASSFSYSTPVQTATNPGPRH 76
PP RG + + G +G + P+ P + PV GPR
Sbjct: 461 PPGPRGFKGDMGVKGPVGGRGPKGDPGSLGPLGPQGPQGQPGE---AGPVGERGPVGPRG 517
Query: 77 LRPETSSSKQHFRTKAPR-------NLSPPGRARSPRNGPPLLVSHTGFPSPNRPRPAPH 129
P SK F T PR ++ PPG GPP G P P+ P+ P
Sbjct: 518 F-PGLKGSKGSFGTGGPRGQPGPKGDIGPPGP-----EGPP------GSPGPSGPQGKPG 565
Query: 130 LLGHRLRGPGGHKGPGPARGRPCPRCLPGLPGLP 163
+ G G G +G +G P + PGLPG P
Sbjct: 566 IAGKT--GSPGQRGAMGPKGEPGIQGPPGLPGPP 597
>gi|45120115 hypothetical protein LOC56905 [Homo sapiens]
Length = 1047
Score = 40.8 bits (94), Expect = 7e-04
Identities = 40/142 (28%), Positives = 53/142 (37%), Gaps = 24/142 (16%)
Query: 70 TNPGPRHLRPETSSSKQHFRTKAPRNLSPPGRARSPRNGPPLLVSHTGFPSPNRPRPAPH 129
T P PR+ + S T+ + L PP + P + PP H P P + P P
Sbjct: 231 TGPYPRNSKQAMSEGPSSPWTQLAQPLGPPCQDTGPTHYPP---PHHPPPHPPQALPCPP 287
Query: 130 LLGH-----------RLRGPGGHKGPGPARG-------RPCPRCLPGLPGLPITHIRFPA 171
H L+ GGHKG G G R P +P L + +P+
Sbjct: 288 ACRHPEKQGSYSPALPLQPLGGHKGTGYQAGGLGSPYLRQQAAQAPYIPPLGLDAYPYPS 347
Query: 172 APLP---PRLVAQVPSRPAAVL 190
APLP P L + P P L
Sbjct: 348 APLPAPSPGLKLEPPLTPRCPL 369
>gi|110349772 alpha 1 type I collagen preproprotein [Homo sapiens]
Length = 1464
Score = 40.4 bits (93), Expect = 0.001
Identities = 56/194 (28%), Positives = 67/194 (34%), Gaps = 35/194 (18%)
Query: 2 PRDSPDQGESIRPRLPPRTRGVRTSPRMLVAPGQGHTRGVRRGVSPVAQADPAQDASSFS 61
P D+GE+ P PP G +P + G+ RG P A P +
Sbjct: 1030 PGAKGDRGET-GPAGPPGAPGAPGAPGPVGPAGKSGDRGE---TGPAGPAGPVGPVGARG 1085
Query: 62 YSTPVQTATNPGPRHLRPETSSSKQHFRTKAPRNLS----PPGRARSPRNGPPLLVSHTG 117
+ P GPR + ET K R S PPG SP P +G
Sbjct: 1086 PAGP------QGPRGDKGETGEQGDR-GIKGHRGFSGLQGPPGPPGSPGEQGP-----SG 1133
Query: 118 FPSPNRPRPAPHLLG-------HRLRGPGGHKGP-------GPARGRPCPRCLPGLPGLP 163
P PR P G + L GP G GP GP G P P PG PG P
Sbjct: 1134 ASGPAGPRGPPGSAGAPGKDGLNGLPGPIGPPGPRGRTGDAGPV-GPPGPPGPPGPPGPP 1192
Query: 164 ITHIRFPAAPLPPR 177
F P PP+
Sbjct: 1193 SAGFDFSFLPQPPQ 1206
Score = 35.4 bits (80), Expect = 0.030
Identities = 45/160 (28%), Positives = 54/160 (33%), Gaps = 15/160 (9%)
Query: 32 APGQGHTRGVRRGVSPVAQADPAQDASSFSYSTPVQTATNPGPRHLRPETSSSKQHFRTK 91
APG RG P A + V GP+ P S Q R +
Sbjct: 315 APGPAGARGNDGATGAAGPPGPTGPAGPPGFPGAVGAKGEAGPQG--PRGSEGPQGVRGE 372
Query: 92 APRNLSPPGRARSPRNGPPLLVSHTGFPSPNRPRPAPHLLGHR----LRGPGGHKGPGPA 147
PPG A + GP G P AP + G RGP G +GPG
Sbjct: 373 P----GPPGPAGAA--GPAGNPGADGQPGAKGANGAPGIAGAPGFPGARGPSGPQGPG-- 424
Query: 148 RGRPCPRCLPGLPGLPITHIRFPAAPLPPRLVAQVPSRPA 187
G P P+ G PG P + A P + Q P PA
Sbjct: 425 -GPPGPKGNSGEPGAPGSKGDTGAKGEPGPVGVQGPPGPA 463
Score = 35.4 bits (80), Expect = 0.030
Identities = 43/168 (25%), Positives = 48/168 (28%), Gaps = 24/168 (14%)
Query: 18 PRTRGVRTSPRMLVAPGQGHTRGVRRGVSPVAQADPAQDASSFSYSTPVQTATNPGPRHL 77
P G R P PG G + PA S + A PG + L
Sbjct: 481 PGPPGERGGPGSRGFPGADGVAGPKGPAGERGSPGPAGPKGSPGEAGRPGEAGLPGAKGL 540
Query: 78 RPETSSSKQHFRTKAPRNLSPPGRARSPRNGPPLLVSHTG---FPSPNRPRPAPHLLGHR 134
S +T P GR P GPP G FP P P G R
Sbjct: 541 TGSPGSPGPDGKTGPPGPAGQDGRPGPP--GPPGARGQAGVMGFPGPKGAAGEPGKAGER 598
Query: 135 -------------------LRGPGGHKGPGPARGRPCPRCLPGLPGLP 163
+GP G GP RG P PG GLP
Sbjct: 599 GVPGPPGAVGPAGKDGEAGAQGPPGPAGPAGERGEQGPAGSPGFQGLP 646
Score = 34.3 bits (77), Expect = 0.068
Identities = 46/167 (27%), Positives = 51/167 (30%), Gaps = 20/167 (11%)
Query: 14 PRLPPRTRG---VRTSPRMLVAPGQGHTRGVRRGVSPVAQADPAQDASSFSYSTPVQTAT 70
P PP RG V P A G+ G R P PA P A
Sbjct: 567 PPGPPGARGQAGVMGFPGPKGAAGEPGKAGERGVPGPPGAVGPAGKDGEAGAQGPPGPA- 625
Query: 71 NPGPRHLRPETSSSKQHFRTKAPRNLSPPGRARSPRN----------GPPLLVSHTGFPS 120
GP R E + P PPG A P GP GFP
Sbjct: 626 --GPAGERGEQGPAGSPGFQGLPGPAGPPGEAGKPGEQGVPGDLGAPGPSGARGERGFPG 683
Query: 121 PNRPRPAPHLLGHR----LRGPGGHKGPGPARGRPCPRCLPGLPGLP 163
+ P G R G G KG A G P + PGL G+P
Sbjct: 684 ERGVQGPPGPAGPRGANGAPGNDGAKGDAGAPGAPGSQGAPGLQGMP 730
Score = 33.1 bits (74), Expect = 0.15
Identities = 49/176 (27%), Positives = 62/176 (35%), Gaps = 26/176 (14%)
Query: 1 MPRDSPDQGESIRPRLPPRTRGVRTSPRMLVAPGQGHTRGVR-----RGVSPV------- 48
+P + GE+ +P G + P L APG RG R RGV
Sbjct: 645 LPGPAGPPGEAGKP-------GEQGVPGDLGAPGPSGARGERGFPGERGVQGPPGPAGPR 697
Query: 49 -AQADPAQDASSFSYSTPVQTATN--PGPRHLRPETSSSKQHFRTKAPRNLSPPGRARSP 105
A P D + P + PG + + E ++ + P G SP
Sbjct: 698 GANGAPGNDGAKGDAGAPGAPGSQGAPGLQGMPGERGAAGLPGPKGDRGDAGPKGADGSP 757
Query: 106 RNGPPLLVSHTGFPSPNRPRPAPHLLGHRLRGPGGHKGPGPARGRPCPRCLPGLPG 161
G + TG P P AP G GP G GP ARG P R PG PG
Sbjct: 758 --GKDGVRGLTGPIGPPGPAGAPGDKGES--GPSGPAGPTGARGAPGDRGEPGPPG 809
Score = 32.0 bits (71), Expect = 0.34
Identities = 25/68 (36%), Positives = 28/68 (41%), Gaps = 12/68 (17%)
Query: 98 PPG-RARSPRNGPPLLVSHTGF---PSPNRPRPAPHLLGHRLRGPGGHKGPGPARGRPCP 153
PPG + S G P TG P P + P GP G +G ARG P P
Sbjct: 426 PPGPKGNSGEPGAPGSKGDTGAKGEPGPVGVQGPP--------GPAGEEGKRGARGEPGP 477
Query: 154 RCLPGLPG 161
LPG PG
Sbjct: 478 TGLPGPPG 485
Score = 30.8 bits (68), Expect = 0.75
Identities = 27/81 (33%), Positives = 29/81 (35%), Gaps = 12/81 (14%)
Query: 93 PRNLSPPGRARSPRN--GPPLLVSHTGFPSPNRPRPAPHLLGHR----------LRGPGG 140
PR L P A P+ GPP G P PR P G G G
Sbjct: 186 PRGLPGPPGAPGPQGFQGPPGEPGEPGASGPMGPRGPPGPPGKNGDDGEAGKPGRPGERG 245
Query: 141 HKGPGPARGRPCPRCLPGLPG 161
GP ARG P LPG+ G
Sbjct: 246 PPGPQGARGLPGTAGLPGMKG 266
Score = 30.4 bits (67), Expect = 0.98
Identities = 53/184 (28%), Positives = 64/184 (34%), Gaps = 30/184 (16%)
Query: 2 PRDSP-DQGESIRPRLPPRTRGVRTSPRMLVAPGQGHTRGVR----RGVSPVAQADPAQD 56
P +P D+GES P P G R +P PG G P A+ +P D
Sbjct: 774 PAGAPGDKGES-GPSGPAGPTGARGAPGDRGEPGPPGPAGFAGPPGADGQPGAKGEPG-D 831
Query: 57 ASSFSYSTPVQTATNPGPRHLRPETSSSKQHFRTKAPR-NLSPPGRARSP----RNGPPL 111
A + + P A GP P + K R + PPG P R GPP
Sbjct: 832 AGAKGDAGPPGPAGPAGP----PGPIGNVGAPGAKGARGSAGPPGATGFPGAAGRVGPPG 887
Query: 112 LVSHTGFPSPNRPRPAPHLLGHRLRG------------PGGHKGPGPARGRPCPRCLPGL 159
+ G P P P PA G RG P G GP +G P G
Sbjct: 888 PSGNAGPPGP--PGPAGKEGGKGPRGETGPAGRPGEVGPPGPPGPAGEKGSPGADGPAGA 945
Query: 160 PGLP 163
PG P
Sbjct: 946 PGTP 949
Score = 28.5 bits (62), Expect = 3.7
Identities = 46/179 (25%), Positives = 54/179 (30%), Gaps = 41/179 (22%)
Query: 17 PPRTRGVRTSPRMLVAPGQGHTRGVRRGVSPVAQADPAQDASSFSYSTPVQTATNPGPRH 76
PP G P + G +G R P A P A PGP
Sbjct: 840 PPGPAGPAGPPGPIGNVGAPGAKGARGSAGPPGATGFPGAAGRVGPPGPSGNAGPPGP-- 897
Query: 77 LRPETSSSKQHFRTKAPRN----LSPPGRARSPRNGPPLLVSHTGFPSPNRPRPAPHLLG 132
P + + K PR PG P GPP G P + P AP G
Sbjct: 898 --PGPAGKEGG---KGPRGETGPAGRPGEVGPP--GPPGPAGEKGSPGADGPAGAPGTPG 950
Query: 133 HR----------LRGPGGHKG----PGPA--------------RGRPCPRCLPGLPGLP 163
+ L G G +G PGP+ RG P P PGL G P
Sbjct: 951 PQGIAGQRGVVGLPGQRGERGFPGLPGPSGEPGKQGPSGASGERGPPGPMGPPGLAGPP 1009
Score = 27.7 bits (60), Expect = 6.3
Identities = 20/46 (43%), Positives = 22/46 (47%), Gaps = 9/46 (19%)
Query: 135 LRGPGGHKGP----GPARGRPCPRCLPGLPGLPITHIRFPAAPLPP 176
+ GP G GP GPA G P +PG PGLP P P PP
Sbjct: 110 VEGPKGDTGPRGPRGPA-GPPGRDGIPGQPGLPGP----PGPPGPP 150
Score = 27.7 bits (60), Expect = 6.3
Identities = 30/91 (32%), Positives = 34/91 (37%), Gaps = 20/91 (21%)
Query: 91 KAPRN-LSPPGRARSPRNGPPLLVSHTGFPSPNRPRP-----APHL-LGHRLRGPGGHKG 143
+ PR PPGR P G P L G P P P AP L G+ + GG
Sbjct: 120 RGPRGPAGPPGRDGIP--GQPGLPGPPGPPGPPGPPGLGGNFAPQLSYGYDEKSTGGISV 177
Query: 144 PGPAR-----------GRPCPRCLPGLPGLP 163
PGP G P P+ G PG P
Sbjct: 178 PGPMGPSGPRGLPGPPGAPGPQGFQGPPGEP 208
>gi|178557734 microtubule-associated protein tau isoform 6 [Homo
sapiens]
Length = 776
Score = 40.4 bits (93), Expect = 0.001
Identities = 41/158 (25%), Positives = 62/158 (39%), Gaps = 24/158 (15%)
Query: 45 VSPVAQADPAQDASSFSYSTPVQTAT-NPGPRHLRPETSSSKQHFRTKAPRNLSPPGR-- 101
+ P + A + SS + + V + T + G + ++ + + K T PR +PPG+
Sbjct: 424 IQPSSPAVCPEPPSSPKHVSSVTSRTGSSGAKEMKLKGADGKTKIAT--PRGAAPPGQKG 481
Query: 102 ----ARSPRNGPPLLVSHTGFPSPN---RPRPAPHLLGHRLRGPGGHKGPGPARGRPCPR 154
R P PP + + RP PA GP +G P G
Sbjct: 482 QANATRIPAKTPPAPKTPPSSATKQVQRRPPPA---------GPRSERGEPPKSGDRSGY 532
Query: 155 CLPGLPGLPITHIRFPAAPLPPRLVAQVPSRPAAVLFP 192
PG PG P + R P+ P PP + P + A V P
Sbjct: 533 SSPGSPGTPGSRSRTPSLPTPP---TREPKKVAVVRTP 567
>gi|15890086 type IV collagen alpha 5 isoform 2 precursor [Homo
sapiens]
Length = 1691
Score = 40.4 bits (93), Expect = 0.001
Identities = 31/91 (34%), Positives = 34/91 (37%), Gaps = 8/91 (8%)
Query: 71 NPGPRHLRPETSSSKQHFRTKAPRNLSPPGRARSPRNGPPLLVSHTGFPSPNRPRPAPHL 130
NPGP L + P N PG P+ P GFP P P
Sbjct: 1191 NPGPPGLPGLSGQKGDGGLPGIPGNPGLPG----PKGEP----GFHGFPGVQGPPGPPGS 1242
Query: 131 LGHRLRGPGGHKGPGPARGRPCPRCLPGLPG 161
G L GP G+ GP GRP P GLPG
Sbjct: 1243 PGPALEGPKGNPGPQGPPGRPGPTGFQGLPG 1273
Score = 37.0 bits (84), Expect = 0.010
Identities = 27/66 (40%), Positives = 29/66 (43%), Gaps = 10/66 (15%)
Query: 108 GPPLLVSHTGFPSPNRPRPAPHLLGHR-LRGPGGHKG-------PGP--ARGRPCPRCLP 157
G P L G P P P+ P L G L GP G KG PGP G P P +P
Sbjct: 991 GQPGLSGQPGLPGPPGPKGNPGLPGQPGLIGPPGLKGTIGDMGFPGPQGVEGPPGPSGVP 1050
Query: 158 GLPGLP 163
G PG P
Sbjct: 1051 GQPGSP 1056
Score = 34.3 bits (77), Expect = 0.068
Identities = 48/162 (29%), Positives = 53/162 (32%), Gaps = 36/162 (22%)
Query: 33 PGQGHTRGV-RRGVSPVAQADPAQDASSFSYSTPVQTATNPGPRHLRPETSSSKQHFRTK 91
PG G V +G+ VA +P Q P QT T PG L
Sbjct: 623 PGFGPPGPVGEKGIQGVA-GNPGQPGIPGPKGDPGQTITQPGKPGL-------------- 667
Query: 92 APRNLSPPGRARSPRNGPPLLVSHTGFPSPNRPRPAPHLLGHRLRGPGGHKG----PGP- 146
P N G P G P L G P + P + G L GP G KG PGP
Sbjct: 668 -PGNPGRDGDVGLP--GDPGLPGQPGLPGIPGSKGEPGIPGIGLPGPPGPKGFPGIPGPP 724
Query: 147 ----------ARGRPCPRCLPGLPGLPITHIRFPAAPLPPRL 178
G P P PG G P P P PP L
Sbjct: 725 GAPGTPGRIGLEGPPGPPGFPGPKGEP--GFALPGPPGPPGL 764
Score = 34.3 bits (77), Expect = 0.068
Identities = 26/70 (37%), Positives = 28/70 (40%), Gaps = 7/70 (10%)
Query: 98 PPGRARSPRNGPPLLVSHTGFPSPNRPRPAPHLLGHR----LRGPGGHKGPGPARGRPCP 153
PPG SP P L G P P P P G + GP G G G +G
Sbjct: 1236 PPGPPGSPG---PALEGPKGNPGPQGPPGRPGPTGFQGLPGPEGPPGLPGNGGIKGEKGN 1292
Query: 154 RCLPGLPGLP 163
PGLPGLP
Sbjct: 1293 PGQPGLPGLP 1302
Score = 33.9 bits (76), Expect = 0.088
Identities = 24/66 (36%), Positives = 26/66 (39%), Gaps = 12/66 (18%)
Query: 108 GPPLLVSHTGFPSPNRPRPAPHLLGHRLRGPGGHKGPGPARGRPCPRCLPGLPGLPITHI 167
G P L H G P P P GP G KG G P P+ + G PGLP
Sbjct: 51 GFPGLEGHPGLPGFPGPEGPP--------GPRGQKGDDGIPGPPGPKGIRGPPGLP---- 98
Query: 168 RFPAAP 173
FP P
Sbjct: 99 GFPGTP 104
Score = 33.1 bits (74), Expect = 0.15
Identities = 28/75 (37%), Positives = 31/75 (41%), Gaps = 14/75 (18%)
Query: 99 PGRARSPRNGPPLLVSHTG---------FPSPNRPRPAPHLLGHRLRGPGGHKGPGPARG 149
PG A GPP L G FP P P L G L GP G GP G
Sbjct: 751 PGFALPGPPGPPGLPGFKGALGPKGDRGFPGPPGPPGRTGLDG--LPGPKGDVGPN---G 805
Query: 150 RPCPRCLPGLPGLPI 164
+P P PGLPG+ +
Sbjct: 806 QPGPMGPPGLPGIGV 820
Score = 32.0 bits (71), Expect = 0.34
Identities = 22/60 (36%), Positives = 26/60 (43%), Gaps = 4/60 (6%)
Query: 108 GPPLLVSHTGFPSPNRPRPAPHLLG----HRLRGPGGHKGPGPARGRPCPRCLPGLPGLP 163
GPP L + G P N + P L G ++GP G G G P PG PGLP
Sbjct: 1309 GPPGLQGNPGRPGLNGMKGDPGLPGVPGFPGMKGPSGVPGSAGPEGEPGLIGPPGPPGLP 1368
Score = 31.6 bits (70), Expect = 0.44
Identities = 26/82 (31%), Positives = 30/82 (36%), Gaps = 16/82 (19%)
Query: 93 PRNLSPPGRARSPRNGPPLLVSHTGFPSP-----------NRPRPAPHLLGHRLRGPGGH 141
P + PPG GPP G P P + P P G + GP G
Sbjct: 807 PGPMGPPGLPGIGVQGPP---GPPGIPGPIGQPGLHGIPGEKGDPGPP--GLDVPGPPGE 861
Query: 142 KGPGPARGRPCPRCLPGLPGLP 163
+G G P P PG PGLP
Sbjct: 862 RGSPGIPGAPGPIGPPGSPGLP 883
Score = 30.8 bits (68), Expect = 0.75
Identities = 32/90 (35%), Positives = 36/90 (40%), Gaps = 21/90 (23%)
Query: 93 PRNLS-PPGRARSPRN-GPPLLVSHTGFPSPNRPRPAPHLLGHRLRGPGGHKG-PG-PAR 148
P+ +S PPG P GP H G P P + P G + GP G KG PG P
Sbjct: 1132 PKGISGPPGNPGLPGEPGPVGGGGHPGQPGPPGEKGKPGQDG--IPGPAGQKGEPGQPGF 1189
Query: 149 GRPCPRCLPG---------------LPGLP 163
G P P LPG PGLP
Sbjct: 1190 GNPGPPGLPGLSGQKGDGGLPGIPGNPGLP 1219
Score = 30.8 bits (68), Expect = 0.75
Identities = 30/86 (34%), Positives = 32/86 (37%), Gaps = 7/86 (8%)
Query: 93 PRNLSPPGRARSP-RNGPPLLVSHTGFPS-PNRPRPAPHLLGHRLRGPGGHKGPGPARGR 150
P PPG P ++G P G P P P P L G G KG G G
Sbjct: 1157 PGQPGPPGEKGKPGQDGIPGPAGQKGEPGQPGFGNPGPP----GLPGLSGQKGDGGLPGI 1212
Query: 151 PCPRCLPGLPGLPITHIRFPAAPLPP 176
P LPG G P H FP PP
Sbjct: 1213 PGNPGLPGPKGEPGFH-GFPGVQGPP 1237
Score = 30.4 bits (67), Expect = 0.98
Identities = 22/68 (32%), Positives = 28/68 (41%), Gaps = 11/68 (16%)
Query: 113 VSHTGFPSPNRPRPAPHLLGHR----LRGPGGHKGPGPARGRPCPRCLPGLPGLPITHIR 168
+S G P P+ P L G+ ++G G G G P + PGLPG
Sbjct: 1070 ISSIGLPGLPGPKGEPGLPGYPGNPGIKGSVGDPGLPGLPGTPGAKGQPGLPG------- 1122
Query: 169 FPAAPLPP 176
FP P PP
Sbjct: 1123 FPGTPGPP 1130
Score = 30.0 bits (66), Expect = 1.3
Identities = 22/57 (38%), Positives = 25/57 (43%), Gaps = 11/57 (19%)
Query: 107 NGPPLLVSHTGFPSPNRPRPAPHLLGHRLRGPGGHKGPGPARGRPCPRCLPGLPGLP 163
+GPP G P P P LG G G KG A G P+ LPG+PG P
Sbjct: 490 SGPPGQPGLPGLPGP------PGSLG--FPGQKGEKGQAGATG---PKGLPGIPGAP 535
Score = 28.9 bits (63), Expect = 2.8
Identities = 26/79 (32%), Positives = 28/79 (35%), Gaps = 6/79 (7%)
Query: 98 PPGRARSPRNGPPLLVSHTGFPSPNRPRPAPHLLGHRLRGPGGHKGPGPARGRPCPRCLP 157
PPG A GPP GFP + G + GP G G A G P P
Sbjct: 387 PPGAAVMGPPGPP------GFPGERGQKGDEGPPGISIPGPPGLDGQPGAPGLPGPPGPA 440
Query: 158 GLPGLPITHIRFPAAPLPP 176
G P I P P PP
Sbjct: 441 GPHIPPSDEICEPGPPGPP 459
Score = 28.9 bits (63), Expect = 2.8
Identities = 24/66 (36%), Positives = 25/66 (37%), Gaps = 2/66 (3%)
Query: 98 PPGRARSPR-NGPPLLVSHTGFPSPNRPRPAPHLLG-HRLRGPGGHKGPGPARGRPCPRC 155
PPG P G P G P P P P G G GG KG G+P R
Sbjct: 1383 PPGIPGQPGLKGLPGPQGPQGLPGPTGPPGDPGRNGLPGFDGAGGRKGDPGLPGQPGTRG 1442
Query: 156 LPGLPG 161
L G PG
Sbjct: 1443 LDGPPG 1448
Score = 28.1 bits (61), Expect = 4.8
Identities = 25/69 (36%), Positives = 28/69 (40%), Gaps = 4/69 (5%)
Query: 98 PPGRARSP-RNGPPLLVSHTGFPSP--NRPRPAPHLLGHRLRGPGGHKGPGPARGRPCPR 154
PPG P G P + + P P N P P + L GP G GP G P
Sbjct: 145 PPGPPGIPGMKGEPGSIIMSSLPGPKGNPGYPGPPGI-QGLPGPTGIPGPIGPPGPPGLM 203
Query: 155 CLPGLPGLP 163
PG PGLP
Sbjct: 204 GPPGPPGLP 212
Score = 27.3 bits (59), Expect = 8.3
Identities = 21/64 (32%), Positives = 27/64 (42%), Gaps = 11/64 (17%)
Query: 90 TKAPRNLSPPGRARSPRNGPPLLVSHTGFPSPNRPRPAPHLLGHRLRGPGGHKGPGPARG 149
T P + PPG PP L+ G P P P ++ G +GP G KG +G
Sbjct: 188 TGIPGPIGPPG--------PPGLMGPPG--PPGLPGPKGNM-GLNFQGPKGEKGEQGLQG 236
Query: 150 RPCP 153
P P
Sbjct: 237 PPGP 240
Score = 27.3 bits (59), Expect = 8.3
Identities = 20/60 (33%), Positives = 26/60 (43%), Gaps = 14/60 (23%)
Query: 117 GFPSPNRPRPAPHLLGHR-------------LRGPGGHKGPGPARGRPCPRCLPGLPGLP 163
G P P P P+LLG + + GP G++G G+P PGLPG P
Sbjct: 947 GLPGPPGPMD-PNLLGSKGEKGEPGLPGIPGVSGPKGYQGLPGDPGQPGLSGQPGLPGPP 1005
>gi|18079216 CASK interacting protein 1 [Homo sapiens]
Length = 1431
Score = 39.7 bits (91), Expect = 0.002
Identities = 42/127 (33%), Positives = 51/127 (40%), Gaps = 15/127 (11%)
Query: 64 TPVQTATNPGPRHLRPETSSSKQHFRTKAPRNLSPPGRARSPR-NGPPLLVSHTGFPSPN 122
+P T P P+ T +SK K P L PG R +G P VS P P
Sbjct: 1227 SPKPVLTQPVPKLQGSPTPTSK-----KVP--LPGPGSPEVKRAHGTPPPVSPKPPPPPT 1279
Query: 123 RPRPAPHLLGHRLRGPGGHKGPGPA--RGRPCPRCLPGLPGLPITHIRFPAAPLPPRLVA 180
P+P + G P G GP PA R P L PG P + PA P P A
Sbjct: 1280 APKPVKAVAGL----PSGSAGPSPAPSPARQPPAALAKPPGTPPSLGASPAKPPSPGAPA 1335
Query: 181 -QVPSRP 186
VP++P
Sbjct: 1336 LHVPAKP 1342
Score = 33.9 bits (76), Expect = 0.088
Identities = 33/115 (28%), Positives = 38/115 (33%), Gaps = 15/115 (13%)
Query: 69 ATNPGPRHLRPETSSSKQHF----RTKAPRNLSPPGRARSPRNGPPLLVSHTGFPSPNRP 124
A GP + P T H R ++ S GRAR + LL PS
Sbjct: 663 AAMTGPAEVGPTTEKPSSHLPPTPRATTRQDSSLGGRARHMSSSQELLGDGPPGPSSPMS 722
Query: 125 RPAPHLLGHRLRGPGGHKGPGPARGRPCPRCLPGLPGLPITHIRFPAAPLPPRLV 179
R +LL GPA G P PG G I P P PR V
Sbjct: 723 RSQEYLLDE-----------GPAPGTPPREARPGRHGHSIKRASVPPVPGKPRQV 766
Score = 33.1 bits (74), Expect = 0.15
Identities = 40/161 (24%), Positives = 59/161 (36%), Gaps = 39/161 (24%)
Query: 47 PVAQADPAQDAS---SFSYSTPVQTATNPGPRHLRPETSSSKQHFRTKAPRNLSPPGRAR 103
P +A QD+S + + Q GP S S+++ + P +PP AR
Sbjct: 684 PTPRATTRQDSSLGGRARHMSSSQELLGDGPPGPSSPMSRSQEYLLDEGPAPGTPPREAR 743
Query: 104 SPRNG-------------------PPLLVSHTGFPSPNRPRP-APHLLGHRLRGPGGHKG 143
R+G PP T +P + RP +P LG GP G
Sbjct: 744 PGRHGHSIKRASVPPVPGKPRQVLPPGTSHFTPPQTPTKTRPGSPQALG----GPHG-PA 798
Query: 144 PGPARGRPCPRCLPGLPGLPITHIRFPAAPLPPRLVAQVPS 184
P A+ +P P+ LP P+ PR + Q P+
Sbjct: 799 PATAKVKPTPQLLPP-----------TERPMSPRSLPQSPT 828
Score = 30.0 bits (66), Expect = 1.3
Identities = 32/92 (34%), Positives = 38/92 (41%), Gaps = 12/92 (13%)
Query: 98 PPGRARSPRNGPPLLVSHTGFPSPNRPRPAPHLLGHRLRGPGGHKGPGPARGRPCPRCLP 157
P G AR P P VS P P +P P L G P K P P G P +
Sbjct: 1214 PEGEARKPAKPP---VS----PKPVLTQPVPKLQGSPT--PTSKKVPLPGPGSPEVKRAH 1264
Query: 158 GLPGLPITHIRFP--AAPLPPRLVAQVPSRPA 187
G P P++ P AP P + VA +PS A
Sbjct: 1265 GTPP-PVSPKPPPPPTAPKPVKAVAGLPSGSA 1295
>gi|111118976 collagen, type II, alpha 1 isoform 1 precursor [Homo
sapiens]
Length = 1487
Score = 39.7 bits (91), Expect = 0.002
Identities = 53/168 (31%), Positives = 61/168 (36%), Gaps = 20/168 (11%)
Query: 2 PRDSPDQGESIRP-----RLPPRTRGVRTSPRMLVAPGQGHTRGVRRGVSPVAQADPAQD 56
P D GE+ +P R PP +G R P PG RG G+ A
Sbjct: 248 PGKPGDDGEAGKPGKAGERGPPGPQGARGFPGTPGLPGVKGHRGYP-GLDGAKGEAGAPG 306
Query: 57 ASSFSYSTPVQTATNP-GPRHLRPETSSSKQHFRTKAPRNLSPPGRARSPRNGPPLLVSH 115
S S + P GPR L E + A N PG A P GP
Sbjct: 307 VKGESGSPGENGSPGPMGPRGLPGERGRTGPAGAAGARGNDGQPGPAGPP--GPVGPAGG 364
Query: 116 TGFPSPNRPRPAPHLLGHRLRGPGGHKGPGPARGRPCPRCLPGLPGLP 163
GFP AP G GP G +GP A+G PR PG PG P
Sbjct: 365 PGFPG------APGAKGEA--GPTGARGPEGAQG---PRGEPGTPGSP 401
Score = 36.6 bits (83), Expect = 0.014
Identities = 46/161 (28%), Positives = 61/161 (37%), Gaps = 24/161 (14%)
Query: 9 GESIRPRLPPRTRGVRTSPRMLVAPGQGHTRGV-----RRGV--SPVAQADPAQDASSFS 61
GE RP PP +G R P ++ PG G +G+ +P + P +D + +
Sbjct: 582 GEDGRPG-PPGPQGARGQPGVMGFPGPKGANGEPGKAGEKGLPGAPGLRGLPGKDGETGA 640
Query: 62 YSTPVQTATNPGPRHLRPETSSSKQHFRTKAPRNLSPPGRARSPRNGPPLLVSHTGFPSP 121
P GP R E + P PPG P + G P
Sbjct: 641 AGPPGPA----GPAGERGEQGAPGPSGFQGLPGPPGPPGEGGKPGD--------QGVPGE 688
Query: 122 NRPRPAPHLLGHR-LRGPGGHKGPGPARGRPCPRCLPGLPG 161
AP L+G R RG G +G A+G PR LPG PG
Sbjct: 689 ---AGAPGLVGPRGERGFPGERGSPGAQGLQGPRGLPGTPG 726
Score = 32.7 bits (73), Expect = 0.20
Identities = 38/141 (26%), Positives = 47/141 (33%), Gaps = 9/141 (6%)
Query: 14 PRLPPRTRGVRTSPRMLVAPGQGHTRGVRRGVSPVAQADPAQDASSFSYSTPVQTATNPG 73
P PP G P APG G P P + + P + NPG
Sbjct: 352 PAGPPGPVGPAGGPGFPGAPGAKGEAGPTGARGPEGAQGPRGEPGTPGSPGPAGASGNPG 411
Query: 74 PRHLRPETSSSKQHFRTKAPRNLSPPGRARSPRNGPPLLVSHTGFPSPNRPRPAPHLLGH 133
+ S+ AP PG PR GPP TG P P + G
Sbjct: 412 TDGIPGAKGSAG------APGIAGAPGFP-GPR-GPPGPQGATGPLGPKGQTGEPGIAGF 463
Query: 134 R-LRGPGGHKGPGPARGRPCP 153
+ +GP G GP +G P P
Sbjct: 464 KGEQGPKGEPGPAGPQGAPGP 484
Score = 32.7 bits (73), Expect = 0.20
Identities = 37/135 (27%), Positives = 44/135 (32%), Gaps = 17/135 (12%)
Query: 32 APGQGHTRGVRRGVSPVAQADPAQDASSFSYSTPVQTATNPGPRHLRPETSSSKQHFRTK 91
APG+ RG+ + P A + P +A G R ET
Sbjct: 778 APGKDGGRGLTGPIGPPGPAGANGEKGEVGPPGPAGSAGARGAPGERGETGPP------- 830
Query: 92 APRNLS-PPGRARSP----RNGPPLLVSHTGFPSPNRPRPAPHLLGHRLRGPGGHKGPGP 146
P + PPG P G G P P P AP +GP G GP
Sbjct: 831 GPAGFAGPPGADGQPGAKGEQGEAGQKGDAGAPGPQGPSGAPGP-----QGPTGVTGPKG 885
Query: 147 ARGRPCPRCLPGLPG 161
ARG P G PG
Sbjct: 886 ARGAQGPPGATGFPG 900
Score = 32.3 bits (72), Expect = 0.26
Identities = 25/69 (36%), Positives = 29/69 (42%), Gaps = 16/69 (23%)
Query: 96 LSPPGRARSPRNGPPLLVSHTGFPSPNR---PRPAPHLLGHRLRGPGGHKGPGPARGRPC 152
+ PPG +P N GFP + P+ AP RGP G GP A G P
Sbjct: 503 IGPPGERGAPGN--------RGFPGQDGLAGPKGAPGE-----RGPSGLAGPKGANGDPG 549
Query: 153 PRCLPGLPG 161
PGLPG
Sbjct: 550 RPGEPGLPG 558
Score = 30.0 bits (66), Expect = 1.3
Identities = 42/166 (25%), Positives = 51/166 (30%), Gaps = 25/166 (15%)
Query: 14 PRLPPRTRGVRTSPRMLVAPGQGHTRGVRRGVSPVAQADPAQDASSFSYSTPVQTATNPG 73
PR P RG RT P G RG P P A + G
Sbjct: 325 PRGLPGERG-RTGPA-----GAAGARGNDGQPGPAGPPGPVGPAGGPGFPGAPGAKGEAG 378
Query: 74 PRHLRPETSSSKQHFRTKAPRNLSPPGRARSPRN----------GPPLLVSHTGFPSPNR 123
P R + P + P G + +P G P + GFP P
Sbjct: 379 PTGARGPEGAQGPRGEPGTPGSPGPAGASGNPGTDGIPGAKGSAGAPGIAGAPGFPGPRG 438
Query: 124 PRPAPH----LLGHRLR----GPGGHKGPGPARGRPCPRCLPGLPG 161
P P P LG + + G G KG +G P P G PG
Sbjct: 439 P-PGPQGATGPLGPKGQTGEPGIAGFKGEQGPKGEPGPAGPQGAPG 483
Score = 30.0 bits (66), Expect = 1.3
Identities = 41/162 (25%), Positives = 54/162 (33%), Gaps = 16/162 (9%)
Query: 14 PRLPPRTRGVRTSPRMLVAPGQGHTRGVRRGVSPVA----------QADPAQDASSFSYS 63
P+ P G + +P G+ RG GV P+ + P QD +
Sbjct: 469 PKGEPGPAGPQGAPGPAGEEGKRGARGEPGGVGPIGPPGERGAPGNRGFPGQDGLAGPKG 528
Query: 64 TPVQTATNPGPRHLRPETSSSKQHFRTKAPRNLSPPGRARSPRN-GPPLLVSHTGFPSPN 122
P + GP L ++ R P G P + GP V +G P +
Sbjct: 529 APGER----GPSGLAGPKGANGDPGRPGEPGLPGARGLTGRPGDAGPQGKVGPSGAPGED 584
Query: 123 -RPRPAPHLLGHRLRGPGGHKGPGPARGRPCPRCLPGLPGLP 163
RP P G G GP A G P GLPG P
Sbjct: 585 GRPGPPGPQGARGQPGVMGFPGPKGANGEPGKAGEKGLPGAP 626
Score = 30.0 bits (66), Expect = 1.3
Identities = 32/87 (36%), Positives = 33/87 (37%), Gaps = 17/87 (19%)
Query: 97 SPPGRARSPRNGPPLLVSHTG------FPSPNRPRPAPHLLGHRLRGPGGHKGPGPARGR 150
S P PR GPP V +G P P P P P RG G GP G
Sbjct: 1154 SGPAGPSGPR-GPPGPVGPSGKDGANGIPGPIGP-PGP-------RGRSGETGPAGPPGN 1204
Query: 151 PCPRCLPGLPGLPITHIRFPAAPLPPR 177
P P PG PG I F A L PR
Sbjct: 1205 PGPPGPPGPPGPGIDMSAF--AGLGPR 1229
Score = 29.3 bits (64), Expect = 2.2
Identities = 34/140 (24%), Positives = 44/140 (31%), Gaps = 40/140 (28%)
Query: 64 TPVQTATN-PGPRHLRPETSSSKQHFRTKAPRNLSPPGRARSPR---------------- 106
T + TA+ PGP+ + E K K P P + PR
Sbjct: 91 TDLATASGQPGPKGQKGEPGDIKDIVGPKGPPGPQGPAGEQGPRGDRGDKGEKGAPGPRG 150
Query: 107 -NGPPLLVSHTGFPSPNRPRPAPHLLGHRLR----------------------GPGGHKG 143
+G P + G P P P P L G+ GP G +G
Sbjct: 151 RDGEPGTPGNPGPPGPPGPPGPPGLGGNFAAQMAGGFDEKAGGAQLGVMQGPMGPMGPRG 210
Query: 144 PGPARGRPCPRCLPGLPGLP 163
P G P P+ G PG P
Sbjct: 211 PPGPAGAPGPQGFQGNPGEP 230
Score = 29.3 bits (64), Expect = 2.2
Identities = 25/69 (36%), Positives = 25/69 (36%), Gaps = 18/69 (26%)
Query: 98 PPGRARSP----RNGPPLLVSHTGFPSPNRPRPAPHLLGHRLRGPGGHKGPGPARGRPCP 153
PPG P R GPP G P P P GP G GP ARG P
Sbjct: 892 PPGATGFPGAAGRVGPP---GSNGNPGPPGPP-----------GPSGKDGPKGARGDSGP 937
Query: 154 RCLPGLPGL 162
G PGL
Sbjct: 938 PGRAGEPGL 946
Score = 28.9 bits (63), Expect = 2.8
Identities = 21/65 (32%), Positives = 25/65 (38%), Gaps = 12/65 (18%)
Query: 112 LVSHTGFPSPNRPRPAPHLLGHRLRGPGGHKGPGPARGRPCPRCLPGLPGLPITHIRFPA 171
+V G P P P +GP G +G +G P PR G PG P P
Sbjct: 115 IVGPKGPPGPQGPAGE--------QGPRGDRGDKGEKGAPGPRGRDGEPGTPGN----PG 162
Query: 172 APLPP 176
P PP
Sbjct: 163 PPGPP 167
Score = 28.9 bits (63), Expect = 2.8
Identities = 24/71 (33%), Positives = 26/71 (36%), Gaps = 5/71 (7%)
Query: 98 PPGRARSPR----NGPPLLVSHTGFPSPNRPRPAPHLLGHRLR-GPGGHKGPGPARGRPC 152
PPG A +P G P G P PR P G G G G RG P
Sbjct: 211 PPGPAGAPGPQGFQGNPGEPGEPGVSGPMGPRGPPGPPGKPGDDGEAGKPGKAGERGPPG 270
Query: 153 PRCLPGLPGLP 163
P+ G PG P
Sbjct: 271 PQGARGFPGTP 281
Score = 28.9 bits (63), Expect = 2.8
Identities = 32/97 (32%), Positives = 35/97 (36%), Gaps = 15/97 (15%)
Query: 71 NPGPRHLRPETSSSKQHFRTKAPRNLSPPGRARSPR----NGPPLLVSHTGFPSPNRPRP 126
NPGP P S K + A + PPGRA P GPP G P+
Sbjct: 913 NPGPPG--PPGPSGKDGPKG-ARGDSGPPGRAGEPGLQGPAGPPGEKGEPGDDGPSGAEG 969
Query: 127 APHLLGHRLRGPGGHKGPGPARGRPCPRCLPGLPGLP 163
P GP G G G P R G PGLP
Sbjct: 970 PP--------GPQGLAGQRGIVGLPGQRGERGFPGLP 998
Score = 28.5 bits (62), Expect = 3.7
Identities = 44/169 (26%), Positives = 51/169 (30%), Gaps = 24/169 (14%)
Query: 14 PRLPPRTRGVRTSPRMLVAPGQGHTRGVRRGVSPVAQ-ADPAQDASSFSYSTPVQTATN- 71
PR PP G PG+ GV + P P + P +
Sbjct: 208 PRGPPGPAGAPGPQGFQGNPGEPGEPGVSGPMGPRGPPGPPGKPGDDGEAGKPGKAGERG 267
Query: 72 -PGPRHLR-----PETSSSKQHFRTKAPRNLSPPGRARSP----RNGPPLLVSHTGFPSP 121
PGP+ R P K H P G A +P +G P G P P
Sbjct: 268 PPGPQGARGFPGTPGLPGVKGH--RGYPGLDGAKGEAGAPGVKGESGSP---GENGSPGP 322
Query: 122 NRPRPAPHLLGHR-------LRGPGGHKGPGPARGRPCPRCLPGLPGLP 163
PR P G RG G GP G P PG PG P
Sbjct: 323 MGPRGLPGERGRTGPAGAAGARGNDGQPGPAGPPGPVGPAGGPGFPGAP 371
Score = 28.5 bits (62), Expect = 3.7
Identities = 22/61 (36%), Positives = 22/61 (36%), Gaps = 4/61 (6%)
Query: 107 NGPPLLVSHTGFPSPNRPRPAPHLLGHR-LRGPGGHKGPGPARGR---PCPRCLPGLPGL 162
NG P G P R P G GP G GP RG P P GLPG
Sbjct: 611 NGEPGKAGEKGLPGAPGLRGLPGKDGETGAAGPPGPAGPAGERGEQGAPGPSGFQGLPGP 670
Query: 163 P 163
P
Sbjct: 671 P 671
>gi|111118974 collagen, type II, alpha 1 isoform 2 precursor [Homo
sapiens]
Length = 1418
Score = 39.7 bits (91), Expect = 0.002
Identities = 53/168 (31%), Positives = 61/168 (36%), Gaps = 20/168 (11%)
Query: 2 PRDSPDQGESIRP-----RLPPRTRGVRTSPRMLVAPGQGHTRGVRRGVSPVAQADPAQD 56
P D GE+ +P R PP +G R P PG RG G+ A
Sbjct: 179 PGKPGDDGEAGKPGKAGERGPPGPQGARGFPGTPGLPGVKGHRGYP-GLDGAKGEAGAPG 237
Query: 57 ASSFSYSTPVQTATNP-GPRHLRPETSSSKQHFRTKAPRNLSPPGRARSPRNGPPLLVSH 115
S S + P GPR L E + A N PG A P GP
Sbjct: 238 VKGESGSPGENGSPGPMGPRGLPGERGRTGPAGAAGARGNDGQPGPAGPP--GPVGPAGG 295
Query: 116 TGFPSPNRPRPAPHLLGHRLRGPGGHKGPGPARGRPCPRCLPGLPGLP 163
GFP AP G GP G +GP A+G PR PG PG P
Sbjct: 296 PGFPG------APGAKGEA--GPTGARGPEGAQG---PRGEPGTPGSP 332
Score = 36.6 bits (83), Expect = 0.014
Identities = 46/161 (28%), Positives = 61/161 (37%), Gaps = 24/161 (14%)
Query: 9 GESIRPRLPPRTRGVRTSPRMLVAPGQGHTRGV-----RRGV--SPVAQADPAQDASSFS 61
GE RP PP +G R P ++ PG G +G+ +P + P +D + +
Sbjct: 513 GEDGRPG-PPGPQGARGQPGVMGFPGPKGANGEPGKAGEKGLPGAPGLRGLPGKDGETGA 571
Query: 62 YSTPVQTATNPGPRHLRPETSSSKQHFRTKAPRNLSPPGRARSPRNGPPLLVSHTGFPSP 121
P GP R E + P PPG P + G P
Sbjct: 572 AGPPGPA----GPAGERGEQGAPGPSGFQGLPGPPGPPGEGGKPGD--------QGVPGE 619
Query: 122 NRPRPAPHLLGHR-LRGPGGHKGPGPARGRPCPRCLPGLPG 161
AP L+G R RG G +G A+G PR LPG PG
Sbjct: 620 ---AGAPGLVGPRGERGFPGERGSPGAQGLQGPRGLPGTPG 657
Score = 32.7 bits (73), Expect = 0.20
Identities = 38/141 (26%), Positives = 47/141 (33%), Gaps = 9/141 (6%)
Query: 14 PRLPPRTRGVRTSPRMLVAPGQGHTRGVRRGVSPVAQADPAQDASSFSYSTPVQTATNPG 73
P PP G P APG G P P + + P + NPG
Sbjct: 283 PAGPPGPVGPAGGPGFPGAPGAKGEAGPTGARGPEGAQGPRGEPGTPGSPGPAGASGNPG 342
Query: 74 PRHLRPETSSSKQHFRTKAPRNLSPPGRARSPRNGPPLLVSHTGFPSPNRPRPAPHLLGH 133
+ S+ AP PG PR GPP TG P P + G
Sbjct: 343 TDGIPGAKGSAG------APGIAGAPGFP-GPR-GPPGPQGATGPLGPKGQTGEPGIAGF 394
Query: 134 R-LRGPGGHKGPGPARGRPCP 153
+ +GP G GP +G P P
Sbjct: 395 KGEQGPKGEPGPAGPQGAPGP 415
Score = 32.7 bits (73), Expect = 0.20
Identities = 37/135 (27%), Positives = 44/135 (32%), Gaps = 17/135 (12%)
Query: 32 APGQGHTRGVRRGVSPVAQADPAQDASSFSYSTPVQTATNPGPRHLRPETSSSKQHFRTK 91
APG+ RG+ + P A + P +A G R ET
Sbjct: 709 APGKDGGRGLTGPIGPPGPAGANGEKGEVGPPGPAGSAGARGAPGERGETGPP------- 761
Query: 92 APRNLS-PPGRARSP----RNGPPLLVSHTGFPSPNRPRPAPHLLGHRLRGPGGHKGPGP 146
P + PPG P G G P P P AP +GP G GP
Sbjct: 762 GPAGFAGPPGADGQPGAKGEQGEAGQKGDAGAPGPQGPSGAPGP-----QGPTGVTGPKG 816
Query: 147 ARGRPCPRCLPGLPG 161
ARG P G PG
Sbjct: 817 ARGAQGPPGATGFPG 831
Score = 32.3 bits (72), Expect = 0.26
Identities = 25/69 (36%), Positives = 29/69 (42%), Gaps = 16/69 (23%)
Query: 96 LSPPGRARSPRNGPPLLVSHTGFPSPNR---PRPAPHLLGHRLRGPGGHKGPGPARGRPC 152
+ PPG +P N GFP + P+ AP RGP G GP A G P
Sbjct: 434 IGPPGERGAPGN--------RGFPGQDGLAGPKGAPGE-----RGPSGLAGPKGANGDPG 480
Query: 153 PRCLPGLPG 161
PGLPG
Sbjct: 481 RPGEPGLPG 489
Score = 30.0 bits (66), Expect = 1.3
Identities = 42/166 (25%), Positives = 51/166 (30%), Gaps = 25/166 (15%)
Query: 14 PRLPPRTRGVRTSPRMLVAPGQGHTRGVRRGVSPVAQADPAQDASSFSYSTPVQTATNPG 73
PR P RG RT P G RG P P A + G
Sbjct: 256 PRGLPGERG-RTGPA-----GAAGARGNDGQPGPAGPPGPVGPAGGPGFPGAPGAKGEAG 309
Query: 74 PRHLRPETSSSKQHFRTKAPRNLSPPGRARSPRN----------GPPLLVSHTGFPSPNR 123
P R + P + P G + +P G P + GFP P
Sbjct: 310 PTGARGPEGAQGPRGEPGTPGSPGPAGASGNPGTDGIPGAKGSAGAPGIAGAPGFPGPRG 369
Query: 124 PRPAPH----LLGHRLR----GPGGHKGPGPARGRPCPRCLPGLPG 161
P P P LG + + G G KG +G P P G PG
Sbjct: 370 P-PGPQGATGPLGPKGQTGEPGIAGFKGEQGPKGEPGPAGPQGAPG 414
Score = 30.0 bits (66), Expect = 1.3
Identities = 41/162 (25%), Positives = 54/162 (33%), Gaps = 16/162 (9%)
Query: 14 PRLPPRTRGVRTSPRMLVAPGQGHTRGVRRGVSPVA----------QADPAQDASSFSYS 63
P+ P G + +P G+ RG GV P+ + P QD +
Sbjct: 400 PKGEPGPAGPQGAPGPAGEEGKRGARGEPGGVGPIGPPGERGAPGNRGFPGQDGLAGPKG 459
Query: 64 TPVQTATNPGPRHLRPETSSSKQHFRTKAPRNLSPPGRARSPRN-GPPLLVSHTGFPSPN 122
P + GP L ++ R P G P + GP V +G P +
Sbjct: 460 APGER----GPSGLAGPKGANGDPGRPGEPGLPGARGLTGRPGDAGPQGKVGPSGAPGED 515
Query: 123 -RPRPAPHLLGHRLRGPGGHKGPGPARGRPCPRCLPGLPGLP 163
RP P G G GP A G P GLPG P
Sbjct: 516 GRPGPPGPQGARGQPGVMGFPGPKGANGEPGKAGEKGLPGAP 557
Score = 30.0 bits (66), Expect = 1.3
Identities = 32/87 (36%), Positives = 33/87 (37%), Gaps = 17/87 (19%)
Query: 97 SPPGRARSPRNGPPLLVSHTG------FPSPNRPRPAPHLLGHRLRGPGGHKGPGPARGR 150
S P PR GPP V +G P P P P P RG G GP G
Sbjct: 1085 SGPAGPSGPR-GPPGPVGPSGKDGANGIPGPIGP-PGP-------RGRSGETGPAGPPGN 1135
Query: 151 PCPRCLPGLPGLPITHIRFPAAPLPPR 177
P P PG PG I F A L PR
Sbjct: 1136 PGPPGPPGPPGPGIDMSAF--AGLGPR 1160
Score = 29.6 bits (65), Expect = 1.7
Identities = 32/136 (23%), Positives = 40/136 (29%), Gaps = 39/136 (28%)
Query: 67 QTATNPGPRHLRPETSSSKQHFRTKAPRNLSPPGRARSPR-----------------NGP 109
Q PGP+ + E K K P P + PR +G
Sbjct: 26 QDVRQPGPKGQKGEPGDIKDIVGPKGPPGPQGPAGEQGPRGDRGDKGEKGAPGPRGRDGE 85
Query: 110 PLLVSHTGFPSPNRPRPAPHLLGHRLR----------------------GPGGHKGPGPA 147
P + G P P P P L G+ GP G +GP
Sbjct: 86 PGTPGNPGPPGPPGPPGPPGLGGNFAAQMAGGFDEKAGGAQLGVMQGPMGPMGPRGPPGP 145
Query: 148 RGRPCPRCLPGLPGLP 163
G P P+ G PG P
Sbjct: 146 AGAPGPQGFQGNPGEP 161
Score = 29.3 bits (64), Expect = 2.2
Identities = 25/69 (36%), Positives = 25/69 (36%), Gaps = 18/69 (26%)
Query: 98 PPGRARSP----RNGPPLLVSHTGFPSPNRPRPAPHLLGHRLRGPGGHKGPGPARGRPCP 153
PPG P R GPP G P P P GP G GP ARG P
Sbjct: 823 PPGATGFPGAAGRVGPP---GSNGNPGPPGPP-----------GPSGKDGPKGARGDSGP 868
Query: 154 RCLPGLPGL 162
G PGL
Sbjct: 869 PGRAGEPGL 877
Score = 28.9 bits (63), Expect = 2.8
Identities = 21/65 (32%), Positives = 25/65 (38%), Gaps = 12/65 (18%)
Query: 112 LVSHTGFPSPNRPRPAPHLLGHRLRGPGGHKGPGPARGRPCPRCLPGLPGLPITHIRFPA 171
+V G P P P +GP G +G +G P PR G PG P P
Sbjct: 46 IVGPKGPPGPQGPAGE--------QGPRGDRGDKGEKGAPGPRGRDGEPGTPGN----PG 93
Query: 172 APLPP 176
P PP
Sbjct: 94 PPGPP 98
Score = 28.9 bits (63), Expect = 2.8
Identities = 24/71 (33%), Positives = 26/71 (36%), Gaps = 5/71 (7%)
Query: 98 PPGRARSPR----NGPPLLVSHTGFPSPNRPRPAPHLLGHRLR-GPGGHKGPGPARGRPC 152
PPG A +P G P G P PR P G G G G RG P
Sbjct: 142 PPGPAGAPGPQGFQGNPGEPGEPGVSGPMGPRGPPGPPGKPGDDGEAGKPGKAGERGPPG 201
Query: 153 PRCLPGLPGLP 163
P+ G PG P
Sbjct: 202 PQGARGFPGTP 212
Score = 28.9 bits (63), Expect = 2.8
Identities = 32/97 (32%), Positives = 35/97 (36%), Gaps = 15/97 (15%)
Query: 71 NPGPRHLRPETSSSKQHFRTKAPRNLSPPGRARSPR----NGPPLLVSHTGFPSPNRPRP 126
NPGP P S K + A + PPGRA P GPP G P+
Sbjct: 844 NPGPPG--PPGPSGKDGPKG-ARGDSGPPGRAGEPGLQGPAGPPGEKGEPGDDGPSGAEG 900
Query: 127 APHLLGHRLRGPGGHKGPGPARGRPCPRCLPGLPGLP 163
P GP G G G P R G PGLP
Sbjct: 901 PP--------GPQGLAGQRGIVGLPGQRGERGFPGLP 929
Score = 28.5 bits (62), Expect = 3.7
Identities = 44/169 (26%), Positives = 51/169 (30%), Gaps = 24/169 (14%)
Query: 14 PRLPPRTRGVRTSPRMLVAPGQGHTRGVRRGVSPVAQ-ADPAQDASSFSYSTPVQTATN- 71
PR PP G PG+ GV + P P + P +
Sbjct: 139 PRGPPGPAGAPGPQGFQGNPGEPGEPGVSGPMGPRGPPGPPGKPGDDGEAGKPGKAGERG 198
Query: 72 -PGPRHLR-----PETSSSKQHFRTKAPRNLSPPGRARSP----RNGPPLLVSHTGFPSP 121
PGP+ R P K H P G A +P +G P G P P
Sbjct: 199 PPGPQGARGFPGTPGLPGVKGH--RGYPGLDGAKGEAGAPGVKGESGSP---GENGSPGP 253
Query: 122 NRPRPAPHLLGHR-------LRGPGGHKGPGPARGRPCPRCLPGLPGLP 163
PR P G RG G GP G P PG PG P
Sbjct: 254 MGPRGLPGERGRTGPAGAAGARGNDGQPGPAGPPGPVGPAGGPGFPGAP 302
Score = 28.5 bits (62), Expect = 3.7
Identities = 22/61 (36%), Positives = 22/61 (36%), Gaps = 4/61 (6%)
Query: 107 NGPPLLVSHTGFPSPNRPRPAPHLLGHR-LRGPGGHKGPGPARGR---PCPRCLPGLPGL 162
NG P G P R P G GP G GP RG P P GLPG
Sbjct: 542 NGEPGKAGEKGLPGAPGLRGLPGKDGETGAAGPPGPAGPAGERGEQGAPGPSGFQGLPGP 601
Query: 163 P 163
P
Sbjct: 602 P 602
>gi|4502961 alpha 1 type VII collagen precursor [Homo sapiens]
Length = 2944
Score = 39.7 bits (91), Expect = 0.002
Identities = 35/98 (35%), Positives = 42/98 (42%), Gaps = 13/98 (13%)
Query: 73 GPRHLRPETSSSKQHFRTKAPRNLSPPGRARSPR-NGPPLLVSHTGFPSPNRPRPAPHLL 131
GPR + E + Q + P PGR P +GPP G P P P P L
Sbjct: 1341 GPRGPKGEPGAPGQVIGGEGP---GLPGRKGDPGPSGPPGPRGPLGDPGPRGP---PGLP 1394
Query: 132 GHRLRGPGGHKG----PGPARGRPCPR--CLPGLPGLP 163
G ++G G +G PGP G P LPGLPG P
Sbjct: 1395 GTAMKGDKGDRGERGPPGPGEGGIAPGEPGLPGLPGSP 1432
Score = 35.4 bits (80), Expect = 0.030
Identities = 30/87 (34%), Positives = 35/87 (40%), Gaps = 24/87 (27%)
Query: 101 RARSPRNGPPLLVSHTGFPSPNRPR-----PAPHLLGHR----LRG----PGGHKGPGPA 147
R R+GPP L G P P P+ P P L G + L+G PG + GP
Sbjct: 2069 RGEQGRDGPPGLPGTPGPPGPPGPKVSVDEPGPGLSGEQGPPGLKGAKGEPGSNGDQGPK 2128
Query: 148 -----------RGRPCPRCLPGLPGLP 163
RG P PR G PGLP
Sbjct: 2129 GDRGVPGIKGDRGEPGPRGQDGNPGLP 2155
Score = 34.3 bits (77), Expect = 0.068
Identities = 35/113 (30%), Positives = 43/113 (38%), Gaps = 23/113 (20%)
Query: 72 PGPRHLRPETSSSKQHFRTKAPRNLSPPGRARSPRN-GPPLLVSHTGFPSPNR------- 123
PGP+ ++ + A PGRA +P G P L G P P
Sbjct: 1283 PGPQGPPGSATAKGERGFPGADGRPGSPGRAGNPGTPGAPGLKGSPGLPGPRGDPGERGP 1342
Query: 124 --PRPAPHLLGHRLRGPG----GHKG-PGPAR--------GRPCPRCLPGLPG 161
P+ P G + G G G KG PGP+ G P PR PGLPG
Sbjct: 1343 RGPKGEPGAPGQVIGGEGPGLPGRKGDPGPSGPPGPRGPLGDPGPRGPPGLPG 1395
Score = 34.3 bits (77), Expect = 0.068
Identities = 24/74 (32%), Positives = 30/74 (40%), Gaps = 7/74 (9%)
Query: 96 LSPPGRARSP---RNGPPLLVSHTGFPSPNRPRPAPHLLGHR----LRGPGGHKGPGPAR 148
+ PPG+ +G P L G P PR P +G + GP G G R
Sbjct: 1438 VGPPGKKGEKGDSEDGAPGLPGQPGSPGEQGPRGPPGAIGPKGDRGFPGPLGEAGEKGER 1497
Query: 149 GRPCPRCLPGLPGL 162
G P P GLPG+
Sbjct: 1498 GPPGPAGSRGLPGV 1511
Score = 32.0 bits (71), Expect = 0.34
Identities = 27/77 (35%), Positives = 28/77 (36%), Gaps = 6/77 (7%)
Query: 93 PRNLSPPGRARSPRN--GPPLLVSHTGFPS----PNRPRPAPHLLGHRLRGPGGHKGPGP 146
P PPG A R GP L G P P R RG G KG
Sbjct: 2011 PGPQGPPGLALGERGPPGPSGLAGEPGKPGIPGLPGRAGGVGEAGRPGERGERGEKGERG 2070
Query: 147 ARGRPCPRCLPGLPGLP 163
+GR P LPG PG P
Sbjct: 2071 EQGRDGPPGLPGTPGPP 2087
Score = 31.2 bits (69), Expect = 0.57
Identities = 26/79 (32%), Positives = 28/79 (35%), Gaps = 18/79 (22%)
Query: 108 GPPLLVSHTGFPSPNRPRPAPHLLGHR----------LRGPGGHKGPGPARGRPCPRCLP 157
G P + G P P P L G R L+GP G GP G P P P
Sbjct: 2132 GVPGIKGDRGEPGPRGQDGNPGLPGERGMAGPEGKPGLQGPRGPPGPVGGHGDPGPPGAP 2191
Query: 158 GLPGLPITHIRFPAAPLPP 176
GL G PA P P
Sbjct: 2192 GLAG--------PAGPQGP 2202
Score = 30.8 bits (68), Expect = 0.75
Identities = 26/75 (34%), Positives = 32/75 (42%), Gaps = 7/75 (9%)
Query: 93 PRNLSPPGRARSPRNGPPLLVSHTGFPSPNR---PRPAPHLLGH-RLRGPGGHKGPGPAR 148
P PPGR + GP V G P P+ P+ +P L G G G G A
Sbjct: 2209 PGETGPPGRGLT---GPTGAVGLPGPPGPSGLVGPQGSPGLPGQVGETGKPGAPGRDGAS 2265
Query: 149 GRPCPRCLPGLPGLP 163
G+ R PG+PG P
Sbjct: 2266 GKDGDRGSPGVPGSP 2280
Score = 30.4 bits (67), Expect = 0.98
Identities = 33/112 (29%), Positives = 39/112 (34%), Gaps = 15/112 (13%)
Query: 89 RTKAPRNLSPPGRARSPRNGPPLLVSHTGFPSPNRPRPAPHLLGHR-------LRGPGGH 141
RT AP PPG A + GFP + +P G+ L+G G
Sbjct: 1279 RTGAPGPQGPPGSATAK--------GERGFPGADGRPGSPGRAGNPGTPGAPGLKGSPGL 1330
Query: 142 KGPGPARGRPCPRCLPGLPGLPITHIRFPAAPLPPRLVAQVPSRPAAVLFPM 193
GP G PR G PG P I LP R PS P P+
Sbjct: 1331 PGPRGDPGERGPRGPKGEPGAPGQVIGGEGPGLPGRKGDPGPSGPPGPRGPL 1382
Score = 29.3 bits (64), Expect = 2.2
Identities = 29/79 (36%), Positives = 33/79 (41%), Gaps = 12/79 (15%)
Query: 103 RSPRNGPPLLVSHTGFPSPNRPRPAPHLLGHRLRGPGGHKGPGPARGRPCPRCLP--GLP 160
+ PR GPP V G P P P G L GP G +GP +G P P GL
Sbjct: 2170 QGPR-GPPGPVGGHGDPGP------PGAPG--LAGPAGPQGPSGLKGEPGETGPPGRGLT 2220
Query: 161 GLPITHIRFPAAPLPPRLV 179
G P + P P P LV
Sbjct: 2221 G-PTGAVGLPGPPGPSGLV 2238
Score = 28.5 bits (62), Expect = 3.7
Identities = 47/167 (28%), Positives = 58/167 (34%), Gaps = 30/167 (17%)
Query: 7 DQGESIRPRLPPRT--RGVRTSPRMLVAPGQGHTRGVRRGVSPVA-QADPAQDASSFS-- 61
D+G P LP + RG+R +P GVR V Q DP +D + S
Sbjct: 1641 DEGPPGDPGLPGKAGERGLRGAP------------GVRGPVGEKGDQGDPGEDGRNGSPG 1688
Query: 62 YSTPVQTATNPGPRHLRPETSSSKQHFRTKAPRNLSPPGRARSPRNGPPLLVSH-----T 116
S P PGP + R K R P+ P L +
Sbjct: 1689 SSGPKGDRGEPGPPGPPGRLVDTGPGAREKGEPGDRGQEGPRGPKGDPGLPGAPGERGIE 1748
Query: 117 GFPSPNRPRPAPHLLGHRLRGPGGHKGPGPARGRPCPRCLPGLPGLP 163
GF P P+ P + RGP G KG RG P GL G P
Sbjct: 1749 GFRGPPGPQGDPGV-----RGPAGEKGD---RGPPGLDGRSGLDGKP 1787
Score = 28.5 bits (62), Expect = 3.7
Identities = 29/82 (35%), Positives = 34/82 (41%), Gaps = 15/82 (18%)
Query: 100 GRARSPRNGPPLLVSHTGFPSPNRPRPAPHLL----GHRLRGPGGHKGPGPARGRPCPRC 155
GR SP + P G P P P P L+ G R +G G +G RG P+
Sbjct: 1682 GRNGSPGSSGPK--GDRGEPGP--PGPPGRLVDTGPGAREKGEPGDRGQEGPRG---PKG 1734
Query: 156 LPGLPGLP----ITHIRFPAAP 173
PGLPG P I R P P
Sbjct: 1735 DPGLPGAPGERGIEGFRGPPGP 1756
Score = 28.1 bits (61), Expect = 4.8
Identities = 33/112 (29%), Positives = 42/112 (37%), Gaps = 21/112 (18%)
Query: 72 PGPRHLRPETSSSKQHFRT--KAPRNLSPPGRARSPRN-----GPPLLVSHTGFPS---- 120
PGPR R E + R + PR L+ P +R R G L G +
Sbjct: 2468 PGPRGERGEPGIRGEDGRPGQEGPRGLTGPPGSRGERGEKGDVGSAGLKGDKGDSAVILG 2527
Query: 121 PNRPRPAPHLLGHR----------LRGPGGHKGPGPARGRPCPRCLPGLPGL 162
P PR A +G R RG G G ++G P + GLPGL
Sbjct: 2528 PPGPRGAKGDMGERGPRGLDGDKGPRGDNGDPGDKGSKGEPGDKGSAGLPGL 2579
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.318 0.138 0.444
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 12,064,489
Number of Sequences: 37866
Number of extensions: 913849
Number of successful extensions: 8206
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 173
Number of HSP's successfully gapped in prelim test: 815
Number of HSP's that attempted gapping in prelim test: 4589
Number of HSP's gapped (non-prelim): 3309
length of query: 193
length of database: 18,247,518
effective HSP length: 97
effective length of query: 96
effective length of database: 14,574,516
effective search space: 1399153536
effective search space used: 1399153536
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 59 (27.3 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.