Guide to the Human Genome
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Name: LOC100293538 Sequence: fasta or formatted (193aa) NCBI GI: 239756163
Description:

PREDICTED: hypothetical protein

Not currently referenced in the text

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             7.8         15           2
 C cysteine            1.0          2           1
 D aspartate           2.1          4           1
 E glutamate           1.0          2           1
 F phenylalanine       2.6          5           1
 G glycine             9.8         19           2
 H histidine           4.1          8           1
 I isoleucine          1.6          3           1
 K lysine              1.6          3           1
 L leucine             7.8         15           2
 M methionine          1.6          3           1
 N asparagine          2.1          4           1
 P proline            20.2         39           2
 Q glutamine           3.6          7           1
 R arginine           14.0         27           2
 S serine              8.3         16           3
 T threonine           5.2         10           1
 V valine              5.2         10           1
 W tryptophan          0.0          0           0
 Y tyrosine            0.5          1           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   PREDICTED: hypothetical protein 
LOC100291263          1.000   PREDICTED: hypothetical protein XP_002347505 
LOC100287521          1.000   PREDICTED: hypothetical protein XP_002343324 
LOC100127930          0.057   PREDICTED: hypothetical protein 
COL22A1               0.049   collagen, type XXII, alpha 1 
SPRED3                0.047   sprouty-related, EVH1 domain containing 3 isoform a...
PRB3                  0.047   proline-rich protein BstNI subfamily 3 precursor [H...
FLJ22184              0.044   PREDICTED: hypothetical protein LOC80164 
COL3A1                0.044   collagen type III alpha 1 preproprotein 
FLJ22184              0.044   PREDICTED: hypothetical protein FLJ22184 
COL4A6                0.044   type IV alpha 6 collagen isoform A precursor 
COLEC12               0.044   collectin sub-family member 12 
COL11A2               0.044   collagen, type XI, alpha 2 isoform 2 preproprotein ...
COL11A2               0.044   collagen, type XI, alpha 2 isoform 3 preproprotein ...
COL11A2               0.044   collagen, type XI, alpha 2 isoform 1 preproprotein ...
COL27A1               0.044   collagen, type XXVII, alpha 1 
PRRT1                 0.044   NG5 protein 
COL4A6                0.044   type IV alpha 6 collagen isoform B precursor 
SRRM1                 0.044   serine/arginine repetitive matrix 1 
LOC100290139          0.042   PREDICTED: hypothetical protein XP_002346782 
LOC100288835          0.042   PREDICTED: hypothetical protein XP_002342616 
SCARA3                0.042   scavenger receptor class A, member 3 isoform 1 [Homo...
C15orf39              0.042   hypothetical protein LOC56905 
COL1A1                0.039   alpha 1 type I collagen preproprotein 
MAPT                  0.039   microtubule-associated protein tau isoform 6 
COL4A5                0.039   type IV collagen alpha 5 isoform 2 precursor 
CASKIN1               0.039   CASK interacting protein 1 
COL2A1                0.039   collagen, type II, alpha 1 isoform 1 precursor [Hom...
COL2A1                0.039   collagen, type II, alpha 1 isoform 2 precursor [Hom...
COL7A1                0.039   alpha 1 type VII collagen precursor 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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