Guide to the Human Genome
Home | Table of Contents | Search text | Search genes | Search sequences | Purchase | FAQ | Blog | Help

Search of human proteins with 239752218

BLASTP 2.2.11 [Jun-05-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= gi|239752218 PREDICTED: hypothetical protein XP_002348134 [Homo
sapiens]
         (133 letters)

Database: hs.faa 
           37,866 sequences; 18,247,518 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|239757727 PREDICTED: similar to hCG2013141 [Homo sapiens]          286   3e-78
gi|239752218 PREDICTED: hypothetical protein XP_002348134 [Homo ...   286   3e-78
gi|239754166 PREDICTED: hypothetical protein [Homo sapiens]            43   6e-05
gi|239748699 PREDICTED: hypothetical protein [Homo sapiens]            43   6e-05
gi|239742726 PREDICTED: hypothetical protein XP_002342623 [Homo ...    43   6e-05
gi|116256356 alpha 4 type IV collagen precursor [Homo sapiens]         37   0.005
gi|89363017 alpha 2 type V collagen preproprotein [Homo sapiens]       36   0.008
gi|239746530 PREDICTED: hypothetical protein XP_002343754 [Homo ...    36   0.008
gi|189571647 hypothetical protein LOC79684 [Homo sapiens]              36   0.008
gi|32895368 alpha 1 type VIII collagen precursor [Homo sapiens]        36   0.008
gi|17738302 alpha 1 type VIII collagen precursor [Homo sapiens]        36   0.008
gi|239749709 PREDICTED: hypothetical protein [Homo sapiens]            35   0.018
gi|148536825 alpha 1 type IV collagen preproprotein [Homo sapiens]     35   0.023
gi|4502961 alpha 1 type VII collagen precursor [Homo sapiens]          34   0.039
gi|117414137 retinitis pigmentosa 1-like 1 [Homo sapiens]              34   0.039
gi|115511036 alpha-kinase 3 [Homo sapiens]                             34   0.039
gi|115392133 collagen, type XXIV, alpha 1 [Homo sapiens]               34   0.039
gi|110349772 alpha 1 type I collagen preproprotein [Homo sapiens]      33   0.051
gi|7662162 ALEX2 protein [Homo sapiens]                                33   0.051
gi|29540562 ALEX2 protein [Homo sapiens]                               33   0.051
gi|73486666 alpha 1 type IX collagen isoform 1 precursor [Homo s...    33   0.067
gi|18105032 type X collagen alpha 1 precursor [Homo sapiens]           33   0.067
gi|32140760 collagen, type XXVII, alpha 1 [Homo sapiens]               33   0.067
gi|73486664 alpha 1 type IX collagen isoform 2 precursor [Homo s...    33   0.067
gi|48762934 alpha 2 type I collagen [Homo sapiens]                     33   0.087
gi|185136021 spinster homolog 2 [Homo sapiens]                         32   0.11 
gi|111118976 collagen, type II, alpha 1 isoform 1 precursor [Hom...    32   0.11 
gi|111118974 collagen, type II, alpha 1 isoform 2 precursor [Hom...    32   0.11 
gi|89276751 alpha 1 type V collagen preproprotein [Homo sapiens]       32   0.11 
gi|32964830 collagen, type VIII, alpha 2 [Homo sapiens]                32   0.11 

>gi|239757727 PREDICTED: similar to hCG2013141 [Homo sapiens]
          Length = 133

 Score =  286 bits (732), Expect = 3e-78
 Identities = 133/133 (100%), Positives = 133/133 (100%)

Query: 1   MEGEACAGTWVARGPAPVLGGQGLSGPCTRSGRLVPLAPGSEGLSTWASSCRGGTGSPST 60
           MEGEACAGTWVARGPAPVLGGQGLSGPCTRSGRLVPLAPGSEGLSTWASSCRGGTGSPST
Sbjct: 1   MEGEACAGTWVARGPAPVLGGQGLSGPCTRSGRLVPLAPGSEGLSTWASSCRGGTGSPST 60

Query: 61  AGLPALTTLELSPGLSHLPAGQGSGLAACHAQASLRWAPCEARASRMGASHCSTAPGPVH 120
           AGLPALTTLELSPGLSHLPAGQGSGLAACHAQASLRWAPCEARASRMGASHCSTAPGPVH
Sbjct: 61  AGLPALTTLELSPGLSHLPAGQGSGLAACHAQASLRWAPCEARASRMGASHCSTAPGPVH 120

Query: 121 CPRAEEYRCPVWD 133
           CPRAEEYRCPVWD
Sbjct: 121 CPRAEEYRCPVWD 133


>gi|239752218 PREDICTED: hypothetical protein XP_002348134 [Homo
           sapiens]
          Length = 133

 Score =  286 bits (732), Expect = 3e-78
 Identities = 133/133 (100%), Positives = 133/133 (100%)

Query: 1   MEGEACAGTWVARGPAPVLGGQGLSGPCTRSGRLVPLAPGSEGLSTWASSCRGGTGSPST 60
           MEGEACAGTWVARGPAPVLGGQGLSGPCTRSGRLVPLAPGSEGLSTWASSCRGGTGSPST
Sbjct: 1   MEGEACAGTWVARGPAPVLGGQGLSGPCTRSGRLVPLAPGSEGLSTWASSCRGGTGSPST 60

Query: 61  AGLPALTTLELSPGLSHLPAGQGSGLAACHAQASLRWAPCEARASRMGASHCSTAPGPVH 120
           AGLPALTTLELSPGLSHLPAGQGSGLAACHAQASLRWAPCEARASRMGASHCSTAPGPVH
Sbjct: 61  AGLPALTTLELSPGLSHLPAGQGSGLAACHAQASLRWAPCEARASRMGASHCSTAPGPVH 120

Query: 121 CPRAEEYRCPVWD 133
           CPRAEEYRCPVWD
Sbjct: 121 CPRAEEYRCPVWD 133


>gi|239754166 PREDICTED: hypothetical protein [Homo sapiens]
          Length = 91

 Score = 43.1 bits (100), Expect = 6e-05
 Identities = 19/29 (65%), Positives = 21/29 (72%)

Query: 100 CEARASRMGASHCSTAPGPVHCPRAEEYR 128
           C A AS   A+ CSTAPGP+ CPRAEE R
Sbjct: 43  CAAPASPTSAAPCSTAPGPIDCPRAEECR 71


>gi|239748699 PREDICTED: hypothetical protein [Homo sapiens]
          Length = 91

 Score = 43.1 bits (100), Expect = 6e-05
 Identities = 19/29 (65%), Positives = 21/29 (72%)

Query: 100 CEARASRMGASHCSTAPGPVHCPRAEEYR 128
           C A AS   A+ CSTAPGP+ CPRAEE R
Sbjct: 43  CAAPASPTSAAPCSTAPGPIDCPRAEECR 71


>gi|239742726 PREDICTED: hypothetical protein XP_002342623 [Homo
           sapiens]
          Length = 91

 Score = 43.1 bits (100), Expect = 6e-05
 Identities = 19/29 (65%), Positives = 21/29 (72%)

Query: 100 CEARASRMGASHCSTAPGPVHCPRAEEYR 128
           C A AS   A+ CSTAPGP+ CPRAEE R
Sbjct: 43  CAAPASPTSAAPCSTAPGPIDCPRAEECR 71


>gi|116256356 alpha 4 type IV collagen precursor [Homo sapiens]
          Length = 1690

 Score = 37.0 bits (84), Expect = 0.005
 Identities = 29/90 (32%), Positives = 33/90 (36%), Gaps = 18/90 (20%)

Query: 12  ARGPAPVLGGQGLSGPCTRSG----------------RLVPLAPGSEGLSTWASS--CRG 53
           A GPA + G  GL GP  R G                R  P  PG  GL  +  S    G
Sbjct: 793 AEGPAGIPGFLGLKGPKGREGHAGFPGVPGPPGHSCERGAPGIPGQPGLPGYPGSPGAPG 852

Query: 54  GTGSPSTAGLPALTTLELSPGLSHLPAGQG 83
           G G P   G P    ++  PGL   P   G
Sbjct: 853 GKGQPGDVGPPGPAGMKGLPGLPGRPGAHG 882



 Score = 35.8 bits (81), Expect = 0.010
 Identities = 30/87 (34%), Positives = 35/87 (40%), Gaps = 23/87 (26%)

Query: 3   GEACAGTWVARGPAPVLGGQGLSGPCTRSGRLVPLAPGSEGLSTWASSCRGGTGSPSTAG 62
           GEACAG     GP      QG  G        +P  PG  G+     S  G  G P + G
Sbjct: 397 GEACAGMIGPPGP------QGFPG--------LPGLPGEAGIPGRPDSAPGKPGKPGSPG 442

Query: 63  LPALTTLELSPGLSHLPAGQGSGLAAC 89
           LP       +PGL  LP   GS +  C
Sbjct: 443 LPG------APGLQGLP---GSSVIYC 460



 Score = 28.5 bits (62), Expect = 1.6
 Identities = 27/91 (29%), Positives = 31/91 (34%), Gaps = 4/91 (4%)

Query: 14   GPAPVLGGQGLSGPCTRSGRLVPL--APGSEGLSTWASSCRGGTGSPSTAGLPALTTLEL 71
            GP    G  G  GP    G        PG +G    +  C G  G+    GLP +     
Sbjct: 1057 GPPGFSGIDGARGPKGNKGDPASHFGPPGPKG-EPGSPGCPGHFGASGEQGLPGIQGPRG 1115

Query: 72   SPGLSHLPAGQG-SGLAACHAQASLRWAPCE 101
            SPG    P   G  G    H    LR  P E
Sbjct: 1116 SPGRPGPPGSSGPPGCPGDHGMPGLRGQPGE 1146


>gi|89363017 alpha 2 type V collagen preproprotein [Homo sapiens]
          Length = 1499

 Score = 36.2 bits (82), Expect = 0.008
 Identities = 31/83 (37%), Positives = 38/83 (45%), Gaps = 5/83 (6%)

Query: 1   MEGEACAGTWVARGPAPVLGGQGLSGPCTRSGRLVPLAPGSEGLSTWASSCRGGTGSPST 60
           M+GEA  G   ARGP    G +G +GP    G   P  PG+ G +      +G TGSP T
Sbjct: 385 MKGEA--GPTGARGPEGPQGQRGETGPPGPVGS--PGLPGAIG-TDGTPGAKGPTGSPGT 439

Query: 61  AGLPALTTLELSPGLSHLPAGQG 83
           +G P       SPG       QG
Sbjct: 440 SGPPGSAGPPGSPGPQGSTGPQG 462



 Score = 31.2 bits (69), Expect = 0.25
 Identities = 28/86 (32%), Positives = 32/86 (37%), Gaps = 9/86 (10%)

Query: 7    AGTWVARGPAPVLGGQGLSGPCTRSGRLVPLA-PGSEGLS--------TWASSCRGGTGS 57
            AGT    GP    G +G  GP    G   P+  PG EG +          A   RG  G 
Sbjct: 1013 AGTPGKVGPTGATGDKGPPGPVGPPGSNGPVGEPGPEGPAGNDGTPGRDGAVGERGDRGD 1072

Query: 58   PSTAGLPALTTLELSPGLSHLPAGQG 83
            P  AGLP       +PG    P   G
Sbjct: 1073 PGPAGLPGSQGAPGTPGPVGAPGDAG 1098



 Score = 27.7 bits (60), Expect = 2.8
 Identities = 23/69 (33%), Positives = 28/69 (40%), Gaps = 7/69 (10%)

Query: 20  GGQGLSGPCTRSGRLVPLAPGSEGLSTWASSCRGGTGSPSTAGLPALTTLELSPGLSHLP 79
           G  GL GP    G   P+  GS G        +G  G P   GLP    L  +PG+   P
Sbjct: 531 GSDGLPGPKGAQGERGPV--GSSG----PKGSQGDPGRPGEPGLPGARGLTGNPGVQG-P 583

Query: 80  AGQGSGLAA 88
            G+   L A
Sbjct: 584 EGKLGPLGA 592



 Score = 26.9 bits (58), Expect = 4.8
 Identities = 21/64 (32%), Positives = 24/64 (37%), Gaps = 9/64 (14%)

Query: 20  GGQGLSGPCTRSGRLVPLAPGSEGLSTWASSCRGGTGSPSTAGLPALTTLELSPGLSHLP 79
           G +G  GP    G + P  PG EG        RG  G P T G P       +PG    P
Sbjct: 480 GPKGEPGPHGIQGPIGP--PGEEGK-------RGPRGDPGTVGPPGPVGERGAPGNRGFP 530

Query: 80  AGQG 83
              G
Sbjct: 531 GSDG 534



 Score = 26.2 bits (56), Expect = 8.2
 Identities = 19/62 (30%), Positives = 23/62 (37%)

Query: 13   RGPAPVLGGQGLSGPCTRSGRLVPLAPGSEGLSTWASSCRGGTGSPSTAGLPALTTLELS 72
            RGPA   GG G  G     G+  P  P     +T      G  G     G+P L     +
Sbjct: 956  RGPAGPPGGPGDKGDPGEDGQPGPDGPPGPAGTTGQRGIVGMPGQRGERGMPGLPGPAGT 1015

Query: 73   PG 74
            PG
Sbjct: 1016 PG 1017


>gi|239746530 PREDICTED: hypothetical protein XP_002343754 [Homo
          sapiens]
          Length = 536

 Score = 36.2 bits (82), Expect = 0.008
 Identities = 24/60 (40%), Positives = 28/60 (46%), Gaps = 4/60 (6%)

Query: 4  EACAGTWVARGPA-PVLGGQGLSGPCTRSGRLVPLAPGSEGLSTW--ASSCRGGTGSPST 60
          E C     ARG   P LG  G +G  +  G   P  PG  GL +W  A S RG  G PS+
Sbjct: 40 EPCMAPGAARGRGKPALGAHG-AGCSSMGGAPPPTDPGRAGLRSWGAAGSARGSEGRPSS 98


>gi|189571647 hypothetical protein LOC79684 [Homo sapiens]
          Length = 507

 Score = 36.2 bits (82), Expect = 0.008
 Identities = 30/85 (35%), Positives = 36/85 (42%), Gaps = 7/85 (8%)

Query: 20  GGQGLSGPCTRSGRLVPLAPGSEGLSTWASSCRGGTGSPSTAGLPALTTLELSPGLSHLP 79
           G   LS P T  G   PL PGS   S  A+S  GG G        A +++  SPG     
Sbjct: 34  GNPSLSDPSTPRGAS-PLGPGSAAGSGAAAS--GGLGLGLGGRSAASSSVSFSPG----G 86

Query: 80  AGQGSGLAACHAQASLRWAPCEARA 104
            G G+  AA  A   + W P E  A
Sbjct: 87  GGGGAAAAAAAACRGMSWTPAETNA 111


>gi|32895368 alpha 1 type VIII collagen precursor [Homo sapiens]
          Length = 744

 Score = 36.2 bits (82), Expect = 0.008
 Identities = 26/71 (36%), Positives = 32/71 (45%), Gaps = 11/71 (15%)

Query: 13  RGPAPVLGGQGLSGPCTRSGRLVPLAPGSEGLSTWASSCRGGTGSPSTAGLPALTTLELS 72
           RGP  + G QGL GP    G  +P APG +G         G  G P   GLP +      
Sbjct: 225 RGPKGLPGPQGLRGPKGDKGFGMPGAPGVKGPP-------GMHGPPGPVGLPGVG----K 273

Query: 73  PGLSHLPAGQG 83
           PG++  P  QG
Sbjct: 274 PGVTGFPGPQG 284


>gi|17738302 alpha 1 type VIII collagen precursor [Homo sapiens]
          Length = 744

 Score = 36.2 bits (82), Expect = 0.008
 Identities = 26/71 (36%), Positives = 32/71 (45%), Gaps = 11/71 (15%)

Query: 13  RGPAPVLGGQGLSGPCTRSGRLVPLAPGSEGLSTWASSCRGGTGSPSTAGLPALTTLELS 72
           RGP  + G QGL GP    G  +P APG +G         G  G P   GLP +      
Sbjct: 225 RGPKGLPGPQGLRGPKGDKGFGMPGAPGVKGPP-------GMHGPPGPVGLPGVG----K 273

Query: 73  PGLSHLPAGQG 83
           PG++  P  QG
Sbjct: 274 PGVTGFPGPQG 284


>gi|239749709 PREDICTED: hypothetical protein [Homo sapiens]
          Length = 178

 Score = 35.0 bits (79), Expect = 0.018
 Identities = 32/105 (30%), Positives = 41/105 (39%), Gaps = 14/105 (13%)

Query: 26  GPCTRSGRLVPLAPGSEGLSTWASSCRGGTGSPSTAGLPALTTLELSPGLSHLPAGQGSG 85
           G   +  RL  +A G  G        +G  G+   A  P     E   GLSHL    G+G
Sbjct: 86  GQVPQGERLRAMAKGGVG--------KGSQGAERQASRPHA---EHRLGLSHLTRAAGAG 134

Query: 86  LAACHAQASLRWAPCEARASRMGASHCSTAPGPVHCPRAEEYRCP 130
            A   A A+   +P   +  R GA+    A GP    R    RCP
Sbjct: 135 AARRRAGAARTRSP---KGCRAGAARLERAGGPAAPARVPPARCP 176


>gi|148536825 alpha 1 type IV collagen preproprotein [Homo sapiens]
          Length = 1669

 Score = 34.7 bits (78), Expect = 0.023
 Identities = 22/51 (43%), Positives = 26/51 (50%), Gaps = 4/51 (7%)

Query: 20  GGQGLSGPCTRSGRLVPL--APGSEGL--STWASSCRGGTGSPSTAGLPAL 66
           G  GL GP    G++VPL   PG+EGL  S      +G  G P T G P L
Sbjct: 627 GSPGLPGPKGEPGKIVPLPGPPGAEGLPGSPGFPGPQGDRGFPGTPGRPGL 677



 Score = 30.8 bits (68), Expect = 0.33
 Identities = 25/76 (32%), Positives = 31/76 (40%), Gaps = 6/76 (7%)

Query: 12  ARGPAPVLGGQGLSGPCTRSGRLVPLAPGSEGLSTWA----SSCRGGTGSPSTAGLPALT 67
           ARGP    G  GLSGP    G      PG  GL           +G  G    +GLP L 
Sbjct: 806 ARGPPGGQGPPGLSGPPGIKGEKG--FPGFPGLDMPGPKGDKGAQGLPGITGQSGLPGLP 863

Query: 68  TLELSPGLSHLPAGQG 83
             + +PG+   P  +G
Sbjct: 864 GQQGAPGIPGFPGSKG 879



 Score = 30.8 bits (68), Expect = 0.33
 Identities = 25/82 (30%), Positives = 32/82 (39%), Gaps = 12/82 (14%)

Query: 3    GEACAGTWVARGPAPVLGGQGLSGPCTRSGRLVPLAPGSEGLSTWASSCRGGTGSPSTAG 62
            G A  G    RGP    G  GL GP    G      PG +G+       +G  G+P   G
Sbjct: 1228 GHATEGPKGDRGPQGQPGLPGLPGPMGPPG-----LPGIDGV-------KGDKGNPGWPG 1275

Query: 63   LPALTTLELSPGLSHLPAGQGS 84
             P +   +  PG   +P   GS
Sbjct: 1276 APGVPGPKGDPGFQGMPGIGGS 1297



 Score = 30.0 bits (66), Expect = 0.57
 Identities = 22/72 (30%), Positives = 30/72 (41%), Gaps = 5/72 (6%)

Query: 13   RGPAPVLGGQGLSGPCTRSGRL-VPLAPGSEGLSTWASSCRGGTGSPSTAGLPALTTLEL 71
            +G   + G  G  G     G + +P  PGS GL        G  G P + GLP     + 
Sbjct: 1066 KGDQGIAGFPGSPGEKGEKGSIGIPGMPGSPGLK----GSPGSVGYPGSPGLPGEKGDKG 1121

Query: 72   SPGLSHLPAGQG 83
             PGL  +P  +G
Sbjct: 1122 LPGLDGIPGVKG 1133



 Score = 26.9 bits (58), Expect = 4.8
 Identities = 25/75 (33%), Positives = 27/75 (36%), Gaps = 15/75 (20%)

Query: 14  GPAPVLGGQGLSGPCTRSGRLVPLAPGSEGL----STWASSCRGGTGSPSTAGLPALTTL 69
           GP  V G  G  GP    GR     PG  GL             G G P   GLP L   
Sbjct: 696 GPKGVDGLPGDMGPPGTPGR-----PGFNGLPGNPGVQGQKGEPGVGLPGLKGLPGL--- 747

Query: 70  ELSPGLSHLPAGQGS 84
              PG+   P  +GS
Sbjct: 748 ---PGIPGTPGEKGS 759



 Score = 26.6 bits (57), Expect = 6.3
 Identities = 19/66 (28%), Positives = 28/66 (42%), Gaps = 5/66 (7%)

Query: 20  GGQGLSGPCTRSGRL-VPLAPGSEGLSTWASSCRGGTGSPSTAGLPALTTLELSPGLSHL 78
           G +G  GP  + G    P  PG++G         G +G P   GLP +   +  PG   +
Sbjct: 67  GPEGPQGPPGQKGDTGEPGLPGTKG----TRGPPGASGYPGNPGLPGIPGQDGPPGPPGI 122

Query: 79  PAGQGS 84
           P   G+
Sbjct: 123 PGCNGT 128



 Score = 26.6 bits (57), Expect = 6.3
 Identities = 20/67 (29%), Positives = 25/67 (37%), Gaps = 4/67 (5%)

Query: 20  GGQGLSGPCTRSGRLVPLAPGSEGLSTWASSCRGGTGSPSTAGLPALTTLELSPGLSHLP 79
           G  G  G   + G   P  PG +G+        G  G P T G P    L  +PG+    
Sbjct: 676 GLPGEKGAVGQPGIGFPGPPGPKGVD----GLPGDMGPPGTPGRPGFNGLPGNPGVQGQK 731

Query: 80  AGQGSGL 86
              G GL
Sbjct: 732 GEPGVGL 738



 Score = 26.2 bits (56), Expect = 8.2
 Identities = 24/76 (31%), Positives = 28/76 (36%), Gaps = 6/76 (7%)

Query: 8   GTWVARGPAPVLGGQGLSGPCTRSGRLVPLAPGSEGLSTWASSCRGGTGSPSTAGLPALT 67
           GT   RGP    G  G  G     G+  P  PG  G+      C G  G     G P L 
Sbjct: 88  GTKGTRGPPGASGYPGNPGLPGIPGQDGP--PGPPGIP----GCNGTKGERGPLGPPGLP 141

Query: 68  TLELSPGLSHLPAGQG 83
               +PG   LP  +G
Sbjct: 142 GFAGNPGPPGLPGMKG 157



 Score = 26.2 bits (56), Expect = 8.2
 Identities = 24/74 (32%), Positives = 29/74 (39%), Gaps = 8/74 (10%)

Query: 14  GPAPVLGGQGLSGPCTRSGRLVPLAPGSEGLSTWASSCRGGTGSPSTAGLPALTTLELSP 73
           G A V G QG  G   + G     A G  G   +    +G  G P   G P +T    SP
Sbjct: 507 GVAGVPGPQGTPGLIGQPG-----AKGEPGEFYFDLRLKGDKGDPGFPGQPGMTGRAGSP 561

Query: 74  GLS---HLPAGQGS 84
           G      LP  +GS
Sbjct: 562 GRDGHPGLPGPKGS 575


>gi|4502961 alpha 1 type VII collagen precursor [Homo sapiens]
          Length = 2944

 Score = 33.9 bits (76), Expect = 0.039
 Identities = 31/108 (28%), Positives = 41/108 (37%), Gaps = 6/108 (5%)

Query: 14   GPAPVLGGQG---LSGPCTRSGRLVPLAPGSEGLSTWASSCRGGTGSPSTAGLPALTTLE 70
            GP+ ++G QG   L G    +G+  P APG +G S      RG  G P + GLP     +
Sbjct: 2233 GPSGLVGPQGSPGLPGQVGETGK--PGAPGRDGASG-KDGDRGSPGVPGSPGLPGPVGPK 2289

Query: 71   LSPGLSHLPAGQGSGLAACHAQASLRWAPCEARASRMGASHCSTAPGP 118
              PG +  P     GL     +               GA      PGP
Sbjct: 2290 GEPGPTGAPGQAVVGLPGAKGEKGAPGGLAGDLVGEPGAKGDRGLPGP 2337



 Score = 33.1 bits (74), Expect = 0.067
 Identities = 25/65 (38%), Positives = 27/65 (41%), Gaps = 7/65 (10%)

Query: 13   RGPAPVLGGQG---LSGPCTRSGRLVPLAPGSEGLSTWASSCRGGTGSPSTAGLPALTTL 69
            RG   +LG QG   L GP    G+  P  PG  G        RG TGS    GLP    L
Sbjct: 1877 RGAPGILGPQGPPGLPGPVGPPGQGFPGVPGGTG----PKGDRGETGSKGEQGLPGERGL 1932

Query: 70   ELSPG 74
               PG
Sbjct: 1933 RGEPG 1937



 Score = 31.6 bits (70), Expect = 0.19
 Identities = 39/120 (32%), Positives = 41/120 (34%), Gaps = 19/120 (15%)

Query: 13   RGPAPVLGGQGLSGPCTRSGRLVPLAP-GSEGLSTWASSC----RGGTGSPSTAGLPALT 67
            RGP   +GG G  GP    G   P  P G  GL           RG TG     GLP   
Sbjct: 2173 RGPPGPVGGHGDPGPPGAPGLAGPAGPQGPSGLKGEPGETGPPGRGLTGPTGAVGLPG-- 2230

Query: 68   TLELSPGLSHLPAGQGS-GLAACHAQASLRWAPCEARASRMGASHCSTA-------PGPV 119
                 PG S L   QGS GL     +     AP    AS       S         PGPV
Sbjct: 2231 ----PPGPSGLVGPQGSPGLPGQVGETGKPGAPGRDGASGKDGDRGSPGVPGSPGLPGPV 2286



 Score = 30.0 bits (66), Expect = 0.57
 Identities = 26/71 (36%), Positives = 31/71 (43%), Gaps = 3/71 (4%)

Query: 13   RGPAPVLGGQGLSGPCTRSGRLVPLAPGSEGLSTWASSCRGGTGSPSTAGLPALTTLELS 72
            RGPA   G +G  G   RSG  +   PG+ G S   +   G  G P   GLP L   +  
Sbjct: 1763 RGPAGEKGDRGPPGLDGRSG--LDGKPGAAGPSG-PNGAAGKAGDPGRDGLPGLRGEQGL 1819

Query: 73   PGLSHLPAGQG 83
            PG S  P   G
Sbjct: 1820 PGPSGPPGLPG 1830



 Score = 27.7 bits (60), Expect = 2.8
 Identities = 23/60 (38%), Positives = 27/60 (45%), Gaps = 6/60 (10%)

Query: 20   GGQGLSGPCTRSGRLVPLA----PGSEGLSTWASSCRGGTGSPSTAGLPALTTLELSPGL 75
            G +GL+GP  R G   PL     PGS G    AS  +G  G P   GLP        PG+
Sbjct: 2422 GERGLAGPPGREGIPGPLGPPGPPGSVG-PPGASGLKGDKGDPG-VGLPGPRGERGEPGI 2479


>gi|117414137 retinitis pigmentosa 1-like 1 [Homo sapiens]
          Length = 2400

 Score = 33.9 bits (76), Expect = 0.039
 Identities = 33/114 (28%), Positives = 46/114 (40%), Gaps = 3/114 (2%)

Query: 4   EACAGTWVARGPAPVLGGQGLSGPCTRSGRLVPLAPGSEGLSTWASSCRGG-TGSPSTAG 62
           E  AG  +   P   + G GL GP  + GRL P A   EG S+ +S+  G   GS    G
Sbjct: 492 ERKAGGSLGEDPGLCIDGAGLGGP-EQGGRLTPRARSEEGASSDSSASTGSHEGSSEWGG 550

Query: 63  LPALTTLELSPGLSHLPAGQGSGLAA-CHAQASLRWAPCEARASRMGASHCSTA 115
            P     +     S   A +G   A+   + +SLR    +A     G    + A
Sbjct: 551 RPQGCPGKARAETSQQEASEGGDPASPALSLSSLRSDDLQAETQGQGTEQATGA 604



 Score = 26.6 bits (57), Expect = 6.3
 Identities = 17/49 (34%), Positives = 22/49 (44%), Gaps = 4/49 (8%)

Query: 79  PAGQGSGLAACHAQASLRWAPCEARASRM----GASHCSTAPGPVHCPR 123
           P+ + S L   +     R  PC  R S      G+SH STA GP   P+
Sbjct: 841 PSPEASWLCGRYCPTPPRGRPCPQRRSSSCGSTGSSHQSTARGPGGSPQ 889


>gi|115511036 alpha-kinase 3 [Homo sapiens]
          Length = 1907

 Score = 33.9 bits (76), Expect = 0.039
 Identities = 30/96 (31%), Positives = 42/96 (43%), Gaps = 3/96 (3%)

Query: 24   LSGPCTRSGRLVPLAPGSEGLSTWA-SSCRGGTG-SPSTAGLPALTTLELSPGLSHLPAG 81
            L  PCT S RL  L          A ++ RG  G  PS+  +PA+   E  PGL+   A 
Sbjct: 1233 LLSPCT-SRRLTGLLDREVQAGRQALAAARGSWGPGPSSLTVPAIVVDEEDPGLASEGAS 1291

Query: 82   QGSGLAACHAQASLRWAPCEARASRMGASHCSTAPG 117
            +G G  +      L  +   + A R+G +    APG
Sbjct: 1292 EGEGEVSPEGPGLLGASQESSMAGRLGEAGGQAAPG 1327


>gi|115392133 collagen, type XXIV, alpha 1 [Homo sapiens]
          Length = 1714

 Score = 33.9 bits (76), Expect = 0.039
 Identities = 24/70 (34%), Positives = 30/70 (42%), Gaps = 6/70 (8%)

Query: 14   GPAPVLGGQGLSGPCTRSGRLVPLAPGSEGLSTWASSCRGGTGSPSTAGLPALTTLELSP 73
            GP  + G  G  G     G++ P  PG +GL       RGG G    AG P    ++ S 
Sbjct: 1288 GPKGIQGYHGADGISGNPGKIGP--PGKQGLP----GIRGGPGRTGLAGAPGPPGVKGSS 1341

Query: 74   GLSHLPAGQG 83
            GL   P  QG
Sbjct: 1342 GLPGSPGIQG 1351



 Score = 29.6 bits (65), Expect = 0.74
 Identities = 24/72 (33%), Positives = 27/72 (37%)

Query: 12  ARGPAPVLGGQGLSGPCTRSGRLVPLAPGSEGLSTWASSCRGGTGSPSTAGLPALTTLEL 71
           +RGP  +LG QG+ G     G      P      T     RG  G P   GLP  T    
Sbjct: 928 SRGPDGLLGEQGIQGAKGEKGDQGKRGPHGLIGKTGNPGERGFQGKPGLQGLPGSTGDRG 987

Query: 72  SPGLSHLPAGQG 83
            PG   L   QG
Sbjct: 988 LPGEPGLRGLQG 999



 Score = 26.6 bits (57), Expect = 6.3
 Identities = 21/67 (31%), Positives = 26/67 (38%), Gaps = 6/67 (8%)

Query: 4    EACAGTWVARGPAPVLGGQGLSGPCTRSGRLVPLA----PGSEGL--STWASSCRGGTGS 57
            E  AG     GP   +G +G +GP  R G + P       G +G    T     RG  G 
Sbjct: 1410 EGDAGIVGISGPKGPIGHRGNTGPLGREGIIGPTGRTGPRGEKGFRGETGPQGPRGQPGP 1469

Query: 58   PSTAGLP 64
            P   G P
Sbjct: 1470 PGPPGAP 1476


>gi|110349772 alpha 1 type I collagen preproprotein [Homo sapiens]
          Length = 1464

 Score = 33.5 bits (75), Expect = 0.051
 Identities = 24/57 (42%), Positives = 27/57 (47%), Gaps = 7/57 (12%)

Query: 13   RGPAPVLGGQGLSGPCTRSGRLVPLAPGSEGL-----STWASSCRGGTGSPSTAGLP 64
            RGP   +G  GL+GP   SGR    APG+EG      S  A   RG TG     G P
Sbjct: 994  RGPPGPMGPPGLAGPPGESGR--EGAPGAEGSPGRDGSPGAKGDRGETGPAGPPGAP 1048



 Score = 32.7 bits (73), Expect = 0.087
 Identities = 24/73 (32%), Positives = 34/73 (46%), Gaps = 5/73 (6%)

Query: 12  ARGPAPVLGGQGLSGPCTRSG-RLVPLAPGSEGLSTWASSCRGGTGSPSTAGLPALTTLE 70
           ARG     G +G+ GP   +G R    APG++G    A    G  G+P + G P L  + 
Sbjct: 675 ARGERGFPGERGVQGPPGPAGPRGANGAPGNDG----AKGDAGAPGAPGSQGAPGLQGMP 730

Query: 71  LSPGLSHLPAGQG 83
              G + LP  +G
Sbjct: 731 GERGAAGLPGPKG 743



 Score = 31.2 bits (69), Expect = 0.25
 Identities = 37/131 (28%), Positives = 45/131 (34%), Gaps = 23/131 (17%)

Query: 12  ARGPAPVLGGQGLSGPCTRSGRLVPLAPGSEGLS-----------------TWASSCRGG 54
           ARGP+   G  G  GP   SG   P APGS+G +                       RG 
Sbjct: 414 ARGPSGPQGPGGPPGPKGNSGE--PGAPGSKGDTGAKGEPGPVGVQGPPGPAGEEGKRGA 471

Query: 55  TGSPSTAGLPALTTLELSPGLSHLPAGQGSGLAACHAQASLRWAPCEARASRMGASHCST 114
            G P   GLP        PG    P     G+A     A  R +P    A   G+   + 
Sbjct: 472 RGEPGPTGLPGPPGERGGPGSRGFPG--ADGVAGPKGPAGERGSP--GPAGPKGSPGEAG 527

Query: 115 APGPVHCPRAE 125
            PG    P A+
Sbjct: 528 RPGEAGLPGAK 538



 Score = 30.8 bits (68), Expect = 0.33
 Identities = 38/123 (30%), Positives = 45/123 (36%), Gaps = 18/123 (14%)

Query: 7    AGTWVARGPAPVLGGQGLSG-PCTRSGRLVPLAPGSEGLS-----TWASSCRGGTGS--- 57
            AG     GP  + G +G+ G P  R  R  P  PG  G       + AS  RG  G    
Sbjct: 943  AGAPGTPGPQGIAGQRGVVGLPGQRGERGFPGLPGPSGEPGKQGPSGASGERGPPGPMGP 1002

Query: 58   PSTAGLPALTTLELSPGLSHLPAGQGS-GLAACHAQASLRWAPCEARASRMGASHCSTAP 116
            P  AG P  +  E +PG    P   GS G      +      P        GA     AP
Sbjct: 1003 PGLAGPPGESGREGAPGAEGSPGRDGSPGAKGDRGETGPAGPP--------GAPGAPGAP 1054

Query: 117  GPV 119
            GPV
Sbjct: 1055 GPV 1057



 Score = 28.5 bits (62), Expect = 1.6
 Identities = 22/64 (34%), Positives = 24/64 (37%), Gaps = 3/64 (4%)

Query: 14  GPAPVLGGQGLSGPCTRSGRLVPLAPGSEGLSTWASSCRGGTGS---PSTAGLPALTTLE 70
           GP    GG G  G     G   P  P  E  S   +  +G  G    P  AGLP    L 
Sbjct: 482 GPPGERGGPGSRGFPGADGVAGPKGPAGERGSPGPAGPKGSPGEAGRPGEAGLPGAKGLT 541

Query: 71  LSPG 74
            SPG
Sbjct: 542 GSPG 545



 Score = 28.5 bits (62), Expect = 1.6
 Identities = 30/112 (26%), Positives = 42/112 (37%), Gaps = 7/112 (6%)

Query: 14   GPAPVLGGQGLSGPCTRSGRLVPLAPGSEGLSTWASSCRGGTGSPSTAGLP---ALTTLE 70
            GPA   G +G +GP   +G + P+              +G TG     G+      + L+
Sbjct: 1058 GPAGKSGDRGETGPAGPAGPVGPVGARGPAGPQGPRGDKGETGEQGDRGIKGHRGFSGLQ 1117

Query: 71   LSPGLSHLPAGQGSGLAACHAQASLRWAPCEARASRMGASHCSTAPGPVHCP 122
              PG    P  QG   A+    A  R  P  A A   G    +  PGP+  P
Sbjct: 1118 GPPGPPGSPGEQGPSGAS--GPAGPRGPPGSAGAP--GKDGLNGLPGPIGPP 1165



 Score = 28.1 bits (61), Expect = 2.2
 Identities = 19/65 (29%), Positives = 24/65 (36%)

Query: 12  ARGPAPVLGGQGLSGPCTRSGRLVPLAPGSEGLSTWASSCRGGTGSPSTAGLPALTTLEL 71
           A+G     G +G +GP   +G   P  P     +  A   RG  G P   G P       
Sbjct: 825 AKGEPGDAGAKGDAGPPGPAGPAGPPGPIGNVGAPGAKGARGSAGPPGATGFPGAAGRVG 884

Query: 72  SPGLS 76
            PG S
Sbjct: 885 PPGPS 889



 Score = 28.1 bits (61), Expect = 2.2
 Identities = 23/64 (35%), Positives = 27/64 (42%), Gaps = 6/64 (9%)

Query: 20   GGQGLSGPCTRSGRLVPLAPGSEGLSTWASSCRGGTGSPSTAGLPALTTLELSPGLSHLP 79
            G  GL GP    G     +PG +G S  AS   G  G P +AG P    L   PG    P
Sbjct: 1112 GFSGLQGPPGPPG-----SPGEQGPSG-ASGPAGPRGPPGSAGAPGKDGLNGLPGPIGPP 1165

Query: 80   AGQG 83
              +G
Sbjct: 1166 GPRG 1169



 Score = 27.7 bits (60), Expect = 2.8
 Identities = 20/60 (33%), Positives = 24/60 (40%), Gaps = 9/60 (15%)

Query: 7   AGTWVARGPAPVLGGQGLSGPCTRSGRLVPLAPGSEGLSTWASSCRGGTGSPSTAGLPAL 66
           +G    RGP    G  G  G   + GR     PG  G        +G  G P TAGLP +
Sbjct: 214 SGPMGPRGPPGPPGKNGDDGEAGKPGR-----PGERG----PPGPQGARGLPGTAGLPGM 264



 Score = 27.3 bits (59), Expect = 3.7
 Identities = 17/52 (32%), Positives = 22/52 (42%), Gaps = 3/52 (5%)

Query: 14  GPAPVLGGQGL---SGPCTRSGRLVPLAPGSEGLSTWASSCRGGTGSPSTAG 62
           GPA   GG+G    +GP  R G + P  P        +    G  G+P T G
Sbjct: 899 GPAGKEGGKGPRGETGPAGRPGEVGPPGPPGPAGEKGSPGADGPAGAPGTPG 950



 Score = 26.9 bits (58), Expect = 4.8
 Identities = 21/73 (28%), Positives = 29/73 (39%), Gaps = 9/73 (12%)

Query: 12  ARGPAPVLGGQGLSGPCTRSGRLVPLAPGSEGLSTWASSCRGGTGSPSTAGLPALTTLEL 71
           A+G A   G +G  GP    G   P  PG  G +       G  G+P   G P       
Sbjct: 351 AKGEAGPQGPRGSEGPQGVRGE--PGPPGPAGAA-------GPAGNPGADGQPGAKGANG 401

Query: 72  SPGLSHLPAGQGS 84
           +PG++  P   G+
Sbjct: 402 APGIAGAPGFPGA 414



 Score = 26.9 bits (58), Expect = 4.8
 Identities = 22/71 (30%), Positives = 27/71 (38%), Gaps = 9/71 (12%)

Query: 14  GPAPVLGGQGLSGPCTRSGRLVPLAPGSEGLSTWASSCRGGTGSPSTAGLPALTTLELSP 73
           GPA   G +G SGP   +G       G+ G    A   RG  G P  AG       +  P
Sbjct: 773 GPAGAPGDKGESGPSGPAG-----PTGARG----APGDRGEPGPPGPAGFAGPPGADGQP 823

Query: 74  GLSHLPAGQGS 84
           G    P   G+
Sbjct: 824 GAKGEPGDAGA 834



 Score = 26.6 bits (57), Expect = 6.3
 Identities = 21/62 (33%), Positives = 26/62 (41%), Gaps = 7/62 (11%)

Query: 7   AGTWVARGPAPVLGGQGLSGPCTRSGRLVPLAPGSEGL-----STWASSCRGGTGSPSTA 61
           AG    +GPA   G QGL GP    G      PG +G+     +   S  RG  G P   
Sbjct: 628 AGERGEQGPAGSPGFQGLPGPAGPPGEAG--KPGEQGVPGDLGAPGPSGARGERGFPGER 685

Query: 62  GL 63
           G+
Sbjct: 686 GV 687


>gi|7662162 ALEX2 protein [Homo sapiens]
          Length = 632

 Score = 33.5 bits (75), Expect = 0.051
 Identities = 26/82 (31%), Positives = 36/82 (43%), Gaps = 5/82 (6%)

Query: 4   EACAGTWVARGP---AP--VLGGQGLSGPCTRSGRLVPLAPGSEGLSTWASSCRGGTGSP 58
           EA A T V  GP   AP  V    G++ P   +   VP  P      T A+   G +GSP
Sbjct: 186 EAAAPTEVTEGPGVAAPTKVAEAPGVASPTEAAEAPVPATPTGAAAPTGAAESPGTSGSP 245

Query: 59  STAGLPALTTLELSPGLSHLPA 80
            TA +P  +  + +   +H  A
Sbjct: 246 RTAVVPGTSAAKKATPGAHTGA 267


>gi|29540562 ALEX2 protein [Homo sapiens]
          Length = 632

 Score = 33.5 bits (75), Expect = 0.051
 Identities = 26/82 (31%), Positives = 36/82 (43%), Gaps = 5/82 (6%)

Query: 4   EACAGTWVARGP---AP--VLGGQGLSGPCTRSGRLVPLAPGSEGLSTWASSCRGGTGSP 58
           EA A T V  GP   AP  V    G++ P   +   VP  P      T A+   G +GSP
Sbjct: 186 EAAAPTEVTEGPGVAAPTKVAEAPGVASPTEAAEAPVPATPTGAAAPTGAAESPGTSGSP 245

Query: 59  STAGLPALTTLELSPGLSHLPA 80
            TA +P  +  + +   +H  A
Sbjct: 246 RTAVVPGTSAAKKATPGAHTGA 267


>gi|73486666 alpha 1 type IX collagen isoform 1 precursor [Homo
           sapiens]
          Length = 921

 Score = 33.1 bits (74), Expect = 0.067
 Identities = 24/67 (35%), Positives = 32/67 (47%), Gaps = 4/67 (5%)

Query: 13  RGPAPVLGGQGLSGPCTRSGRLVPLA---PGSEGLSTWASSCRGG-TGSPSTAGLPALTT 68
           RGP   LG +G  GP  R    +P A   PG  G +++  + R G  G P  AG+P +  
Sbjct: 831 RGPKGDLGEKGERGPPGRGPNGLPGAIGLPGDPGPASYGRNGRDGERGPPGVAGIPGVPG 890

Query: 69  LELSPGL 75
               PGL
Sbjct: 891 PPGPPGL 897



 Score = 27.7 bits (60), Expect = 2.8
 Identities = 21/60 (35%), Positives = 23/60 (38%), Gaps = 9/60 (15%)

Query: 12  ARGPAPVLGGQGLSGPCTRSGRL-------VPLAPGSEGLSTWASSCRGGTGSPSTAGLP 64
           A G     G  GL+GP    G +        P  PGS G         G  G P TAGLP
Sbjct: 315 APGKPGTPGADGLTGPDGSPGSIGSKGQKGEPGVPGSRGFP--GRGIPGPPGPPGTAGLP 372



 Score = 27.7 bits (60), Expect = 2.8
 Identities = 23/77 (29%), Positives = 31/77 (40%), Gaps = 6/77 (7%)

Query: 7   AGTWVARGPAPVLGGQGLSGPCTRSGRLVPLAPGSEGLSTWASSCRGGTGSPSTAGLPAL 66
           AG    RG     G  GL GP   +G  +P   G +G+        G  G P   G P  
Sbjct: 513 AGPKGDRGAEGARGIPGLPGPKGDTG--LPGVDGRDGIP----GMPGTKGEPGKPGPPGD 566

Query: 67  TTLELSPGLSHLPAGQG 83
             L+  PG+  +P  +G
Sbjct: 567 AGLQGLPGVPGIPGAKG 583



 Score = 26.2 bits (56), Expect = 8.2
 Identities = 24/76 (31%), Positives = 29/76 (38%), Gaps = 6/76 (7%)

Query: 8   GTWVARGPAPVLGGQGLSGPCTRSGRLVPLAPGSEGLSTWASSCRGGTGSPSTAGLPALT 67
           G+  A G    +G  G  G     G + P  P  +GL       RG  G   + GLP   
Sbjct: 589 GSTGAPGKPGQMGNSGKPGQQGPPGEVGPRGP--QGLP----GSRGELGPVGSPGLPGKL 642

Query: 68  TLELSPGLSHLPAGQG 83
               SPGL  LP   G
Sbjct: 643 GSLGSPGLPGLPGPPG 658


>gi|18105032 type X collagen alpha 1 precursor [Homo sapiens]
          Length = 680

 Score = 33.1 bits (74), Expect = 0.067
 Identities = 26/72 (36%), Positives = 30/72 (41%), Gaps = 5/72 (6%)

Query: 13  RGPAPVLGGQGLSGPCTRSGRLVPLA-PGSEGLSTWASSCRGGTGSPSTAGLPALTTLEL 71
           +GPA + G  GL+GP    G   P   PGS GL       +G TG    AG P       
Sbjct: 325 QGPAGLPGKPGLTGPPGNMGPQGPKGIPGSHGL----PGPKGETGPAGPAGYPGAKGERG 380

Query: 72  SPGLSHLPAGQG 83
           SPG    P   G
Sbjct: 381 SPGSDGKPGYPG 392



 Score = 32.0 bits (71), Expect = 0.15
 Identities = 24/79 (30%), Positives = 31/79 (39%), Gaps = 5/79 (6%)

Query: 8   GTWVARGPAPVLGGQGLSGPCTRSGRLVPLA-PGSEGLSTWASSCRGGTGSPSTAGLPAL 66
           G    +GP  + G  GL GP   +G   P   PG++G         G  G P   G P L
Sbjct: 341 GNMGPQGPKGIPGSHGLPGPKGETGPAGPAGYPGAKG----ERGSPGSDGKPGYPGKPGL 396

Query: 67  TTLELSPGLSHLPAGQGSG 85
              + +PGL       G G
Sbjct: 397 DGPKGNPGLPGPKGDPGVG 415



 Score = 30.4 bits (67), Expect = 0.43
 Identities = 23/83 (27%), Positives = 32/83 (38%), Gaps = 15/83 (18%)

Query: 13  RGPAPVLGGQGLSGPCTRSGRLVPLAP----------GSEGLSTWASSCRGGTGSPSTAG 62
           RG   V G  G+ G     G + P+ P          G EG+        G  G+P   G
Sbjct: 222 RGENGVPGQPGIKGDRGFPGEMGPIGPPGPQGPPGERGPEGIGK-----PGAAGAPGQPG 276

Query: 63  LPALTTLELSPGLSHLPAGQGSG 85
           +P    L  +PG++  P   G G
Sbjct: 277 IPGTKGLPGAPGIAGPPGPPGFG 299



 Score = 29.3 bits (64), Expect = 0.97
 Identities = 23/72 (31%), Positives = 31/72 (43%), Gaps = 2/72 (2%)

Query: 13  RGPAPVLGGQGLSGPCTRSGRLVPLAPGSEGLSTWASSCRGGTGSPSTAGLPALTTLELS 72
           +GP    G +G+  P        P  PG++GL   A    G  G P   G P L  L+  
Sbjct: 252 QGPPGERGPEGIGKPGAAGAPGQPGIPGTKGLPG-APGIAGPPGPPGF-GKPGLPGLKGE 309

Query: 73  PGLSHLPAGQGS 84
            G + LP G G+
Sbjct: 310 RGPAGLPGGPGA 321



 Score = 27.7 bits (60), Expect = 2.8
 Identities = 23/67 (34%), Positives = 25/67 (37%), Gaps = 8/67 (11%)

Query: 8   GTWVARGPAPVLGGQGLSGPCTRSGRLVPLAPGSEGLSTWASSCRGGTGSPSTAGLPALT 67
           GT    GPA   G  G SGP  + G   P   G  GL         G   PS  G P + 
Sbjct: 60  GTPGPPGPAGPRGHPGPSGPPGKPGYGSPGLQGEPGLP--------GPPGPSAVGKPGVP 111

Query: 68  TLELSPG 74
            L   PG
Sbjct: 112 GLPGKPG 118


>gi|32140760 collagen, type XXVII, alpha 1 [Homo sapiens]
          Length = 1860

 Score = 33.1 bits (74), Expect = 0.067
 Identities = 25/70 (35%), Positives = 32/70 (45%), Gaps = 6/70 (8%)

Query: 14   GPAPVLGGQGLSGPCTRSGRLVPLAPGSEGLSTWASSCRGGTGSPSTAGLPALTTLELSP 73
            GPA   G +GL GP    GR  P  PG +G+    +  RG  GS    G+P  +    + 
Sbjct: 1072 GPAGEQGSRGLKGPPGPQGR--PGRPGQQGV----AGERGHLGSRGFPGIPGPSGPPGTK 1125

Query: 74   GLSHLPAGQG 83
            GL   P  QG
Sbjct: 1126 GLPGEPGPQG 1135



 Score = 26.2 bits (56), Expect = 8.2
 Identities = 14/33 (42%), Positives = 17/33 (51%), Gaps = 1/33 (3%)

Query: 13   RGPAPVLGGQGLSGPCTRSGRLVPL-APGSEGL 44
            +GP   +G  GL G     G L PL  PG +GL
Sbjct: 1149 KGPPGAVGEPGLPGEAGMKGDLGPLGTPGEQGL 1181


>gi|73486664 alpha 1 type IX collagen isoform 2 precursor [Homo
           sapiens]
          Length = 678

 Score = 33.1 bits (74), Expect = 0.067
 Identities = 24/67 (35%), Positives = 32/67 (47%), Gaps = 4/67 (5%)

Query: 13  RGPAPVLGGQGLSGPCTRSGRLVPLA---PGSEGLSTWASSCRGG-TGSPSTAGLPALTT 68
           RGP   LG +G  GP  R    +P A   PG  G +++  + R G  G P  AG+P +  
Sbjct: 588 RGPKGDLGEKGERGPPGRGPNGLPGAIGLPGDPGPASYGRNGRDGERGPPGVAGIPGVPG 647

Query: 69  LELSPGL 75
               PGL
Sbjct: 648 PPGPPGL 654



 Score = 27.7 bits (60), Expect = 2.8
 Identities = 21/60 (35%), Positives = 23/60 (38%), Gaps = 9/60 (15%)

Query: 12  ARGPAPVLGGQGLSGPCTRSGRL-------VPLAPGSEGLSTWASSCRGGTGSPSTAGLP 64
           A G     G  GL+GP    G +        P  PGS G         G  G P TAGLP
Sbjct: 72  APGKPGTPGADGLTGPDGSPGSIGSKGQKGEPGVPGSRGFP--GRGIPGPPGPPGTAGLP 129



 Score = 27.7 bits (60), Expect = 2.8
 Identities = 23/77 (29%), Positives = 31/77 (40%), Gaps = 6/77 (7%)

Query: 7   AGTWVARGPAPVLGGQGLSGPCTRSGRLVPLAPGSEGLSTWASSCRGGTGSPSTAGLPAL 66
           AG    RG     G  GL GP   +G  +P   G +G+        G  G P   G P  
Sbjct: 270 AGPKGDRGAEGARGIPGLPGPKGDTG--LPGVDGRDGIP----GMPGTKGEPGKPGPPGD 323

Query: 67  TTLELSPGLSHLPAGQG 83
             L+  PG+  +P  +G
Sbjct: 324 AGLQGLPGVPGIPGAKG 340



 Score = 26.2 bits (56), Expect = 8.2
 Identities = 24/76 (31%), Positives = 29/76 (38%), Gaps = 6/76 (7%)

Query: 8   GTWVARGPAPVLGGQGLSGPCTRSGRLVPLAPGSEGLSTWASSCRGGTGSPSTAGLPALT 67
           G+  A G    +G  G  G     G + P  P  +GL       RG  G   + GLP   
Sbjct: 346 GSTGAPGKPGQMGNSGKPGQQGPPGEVGPRGP--QGLP----GSRGELGPVGSPGLPGKL 399

Query: 68  TLELSPGLSHLPAGQG 83
               SPGL  LP   G
Sbjct: 400 GSLGSPGLPGLPGPPG 415


>gi|48762934 alpha 2 type I collagen [Homo sapiens]
          Length = 1366

 Score = 32.7 bits (73), Expect = 0.087
 Identities = 26/78 (33%), Positives = 32/78 (41%), Gaps = 15/78 (19%)

Query: 7   AGTWVARGPAPVLGGQGLSGPCTRSGRLVPLAPGSEGLSTWASSCRGGTGSPSTAGLPAL 66
           AG     GP   +G  GLSGP    G      PG+ GL+      +G  G P  AG P L
Sbjct: 273 AGPAGPAGPRGEVGLPGLSGPVGPPGN-----PGANGLT----GAKGAAGLPGVAGAPGL 323

Query: 67  TTLELSPGLSHLPAGQGS 84
                 PG   +P   G+
Sbjct: 324 ------PGPRGIPGPVGA 335



 Score = 30.0 bits (66), Expect = 0.57
 Identities = 30/85 (35%), Positives = 32/85 (37%), Gaps = 16/85 (18%)

Query: 7   AGTWVARG----PAPVLGGQGLSGPCTRSGRLVPLAP----GSEGLSTWASSCRGGTGSP 58
           AG   ARG    P P  G +G SG     G   P  P    G EG        RG  G  
Sbjct: 336 AGATGARGLVGEPGPA-GSKGESGNKGEPGSAGPQGPPGPSGEEGK-------RGPNGEA 387

Query: 59  STAGLPALTTLELSPGLSHLPAGQG 83
            +AG P    L  SPG   LP   G
Sbjct: 388 GSAGPPGPPGLRGSPGSRGLPGADG 412



 Score = 29.6 bits (65), Expect = 0.74
 Identities = 24/73 (32%), Positives = 29/73 (39%), Gaps = 9/73 (12%)

Query: 12  ARGPAPVLGGQGLSGPCTRSGRLVPLAPGSEGLSTWASSCRGGTGSPSTAGLPALTTLEL 71
           ARGPA   G  G  G   + GR     PG  G+       +G  G P T GLP    +  
Sbjct: 131 ARGPAGPPGKAGEDGHPGKPGR-----PGERGVV----GPQGARGFPGTPGLPGFKGIRG 181

Query: 72  SPGLSHLPAGQGS 84
             GL  L    G+
Sbjct: 182 HNGLDGLKGQPGA 194



 Score = 27.7 bits (60), Expect = 2.8
 Identities = 20/70 (28%), Positives = 28/70 (40%), Gaps = 3/70 (4%)

Query: 14  GPAPVLGGQGLSGPCTRSGRLVPLAPGSEGLSTWASSCRGGTGSPSTAGLPALTTLELSP 73
           G   + G +G  GP  R+G +  + P         S   G  G P T G   L     +P
Sbjct: 814 GKEGLRGPRGDQGPVGRTGEVGAVGPPGFAGEKGPSGEAGTAGPPGTPGPQGLLG---AP 870

Query: 74  GLSHLPAGQG 83
           G+  LP  +G
Sbjct: 871 GILGLPGSRG 880



 Score = 27.3 bits (59), Expect = 3.7
 Identities = 29/91 (31%), Positives = 37/91 (40%), Gaps = 10/91 (10%)

Query: 3   GEA-CAGTWVARGPAPVLGGQGLSG-PCTRSGRLVPLA------PGSEGLS--TWASSCR 52
           GEA  AG     GP  +LG  G+ G P +R  R +P        PG  G++    A    
Sbjct: 850 GEAGTAGPPGTPGPQGLLGAPGILGLPGSRGERGLPGVAGAVGEPGPLGIAGPPGARGPP 909

Query: 53  GGTGSPSTAGLPALTTLELSPGLSHLPAGQG 83
           G  GSP   G P     + +PG    P   G
Sbjct: 910 GAVGSPGVNGAPGEAGRDGNPGNDGPPGRDG 940



 Score = 26.9 bits (58), Expect = 4.8
 Identities = 24/77 (31%), Positives = 31/77 (40%), Gaps = 6/77 (7%)

Query: 7   AGTWVARGPAPVLGGQGLSGPCTRSGRLVPLAPGSEGLSTWASSCRGGTGSPSTAGLPAL 66
           AG    RGP    G  G +GP    G   P  PG +G         G  G+  TAG    
Sbjct: 585 AGPRGERGPPGESGAAGPTGPIGSRGPSGP--PGPDG----NKGEPGVVGAVGTAGPSGP 638

Query: 67  TTLELSPGLSHLPAGQG 83
           + L    G + +P G+G
Sbjct: 639 SGLPGERGAAGIPGGKG 655



 Score = 26.2 bits (56), Expect = 8.2
 Identities = 26/73 (35%), Positives = 31/73 (42%), Gaps = 7/73 (9%)

Query: 7   AGTWVARGPAPVL---GGQGLSGPCTRSGRLVPLAPGSEGLSTWAS--SCRGGTGSPSTA 61
           AG+    GP  +    G +GL G   R+G + P  PGS G S  A      G  G P   
Sbjct: 387 AGSAGPPGPPGLRGSPGSRGLPGADGRAGVMGP--PGSRGASGPAGVRGPNGDAGRPGEP 444

Query: 62  GLPALTTLELSPG 74
           GL     L  SPG
Sbjct: 445 GLMGPRGLPGSPG 457



 Score = 26.2 bits (56), Expect = 8.2
 Identities = 19/50 (38%), Positives = 21/50 (42%), Gaps = 9/50 (18%)

Query: 14  GPAPVLGGQGLSGPCTRSGRLVPLAPGSEGLSTWASSCRGGTGSPSTAGL 63
           GP  V GG+G  GP        P  PG +GL    S   G  G P   GL
Sbjct: 535 GPQGVQGGKGEQGP--------PGPPGFQGL-PGPSGPAGEVGKPGERGL 575



 Score = 26.2 bits (56), Expect = 8.2
 Identities = 22/63 (34%), Positives = 26/63 (41%), Gaps = 6/63 (9%)

Query: 14   GPAPVLGGQGLSGPCTRSGRLVPLAPGSEGLSTWASSCRGGTGSPSTAGLPALTTLELSP 73
            GPA   G  G SGP  + GR     PG+ G     +  RG  G    AG P        P
Sbjct: 1048 GPAGPRGPAGPSGPAGKDGRTG--HPGTVG----PAGIRGPQGHQGPAGPPGPPGPPGPP 1101

Query: 74   GLS 76
            G+S
Sbjct: 1102 GVS 1104


>gi|185136021 spinster homolog 2 [Homo sapiens]
          Length = 549

 Score = 32.3 bits (72), Expect = 0.11
 Identities = 29/84 (34%), Positives = 30/84 (35%), Gaps = 2/84 (2%)

Query: 13  RGPAPVLGGQGLSGPCTRSGRLVPLAPGSEGLSTWASSCRGGTGSPSTAGLPALTTLELS 72
           RG     GG G  G     G  V  A G E  +   S  R  TG P T G P        
Sbjct: 28  RGAQRGAGGSGCCGARGAGGAGVSAA-GDEVQTLSGSVRRAPTGPPGTPGTPGCAATAKG 86

Query: 73  PGLSH-LPAGQGSGLAACHAQASL 95
           PG     PA  G G  A  A  SL
Sbjct: 87  PGAQQPKPASLGRGRGAAAAILSL 110


>gi|111118976 collagen, type II, alpha 1 isoform 1 precursor [Homo
           sapiens]
          Length = 1487

 Score = 32.3 bits (72), Expect = 0.11
 Identities = 23/72 (31%), Positives = 27/72 (37%), Gaps = 8/72 (11%)

Query: 14  GPAPVLGGQGLSGPCTRSGRLVPL-APGSEGLSTWASSCRGGTGSPSTAGLPALTTLELS 72
           GP    GG G  G     G   P  A G EG        +G  G P T G P       +
Sbjct: 357 GPVGPAGGPGFPGAPGAKGEAGPTGARGPEG-------AQGPRGEPGTPGSPGPAGASGN 409

Query: 73  PGLSHLPAGQGS 84
           PG   +P  +GS
Sbjct: 410 PGTDGIPGAKGS 421



 Score = 32.3 bits (72), Expect = 0.11
 Identities = 22/70 (31%), Positives = 30/70 (42%), Gaps = 12/70 (17%)

Query: 14  GPAPVLGGQGLSGPCTRSGRLVPLAPGSEGLSTWASSCRGGTGSPSTAGLPALTTLELSP 73
           GP    G +G  GP     R  P  PGS G +       G +G+P T G+P       +P
Sbjct: 378 GPTGARGPEGAQGP-----RGEPGTPGSPGPA-------GASGNPGTDGIPGAKGSAGAP 425

Query: 74  GLSHLPAGQG 83
           G++  P   G
Sbjct: 426 GIAGAPGFPG 435



 Score = 31.2 bits (69), Expect = 0.25
 Identities = 24/78 (30%), Positives = 31/78 (39%), Gaps = 6/78 (7%)

Query: 12  ARGPAPVLGGQGLSGPCTRSGRLVPLAP----GSEGLS--TWASSCRGGTGSPSTAGLPA 65
           A+G A   G +G SG    +G   P+ P    G  G +    A+  RG  G P  AG P 
Sbjct: 298 AKGEAGAPGVKGESGSPGENGSPGPMGPRGLPGERGRTGPAGAAGARGNDGQPGPAGPPG 357

Query: 66  LTTLELSPGLSHLPAGQG 83
                  PG    P  +G
Sbjct: 358 PVGPAGGPGFPGAPGAKG 375



 Score = 31.2 bits (69), Expect = 0.25
 Identities = 23/73 (31%), Positives = 30/73 (41%), Gaps = 15/73 (20%)

Query: 12  ARGPAPVLGGQGLSGPCTRSGRLVPLAPGSEGLSTWASSCRGGTGSPSTAGLPALTTLEL 71
           A+GP    G  G  GP   SG      PG++G+       +G  G+P  AG P       
Sbjct: 388 AQGPRGEPGTPGSPGPAGASGN-----PGTDGIP----GAKGSAGAPGIAGAPGF----- 433

Query: 72  SPGLSHLPAGQGS 84
            PG    P  QG+
Sbjct: 434 -PGPRGPPGPQGA 445



 Score = 30.8 bits (68), Expect = 0.33
 Identities = 24/73 (32%), Positives = 27/73 (36%), Gaps = 3/73 (4%)

Query: 14   GPAPVLGGQGLSG-PCTRSGRLVPLAPGSEGL--STWASSCRGGTGSPSTAGLPALTTLE 70
            GP  + G +G+ G P  R  R  P  PG  G      A    G  G P   G P LT   
Sbjct: 972  GPQGLAGQRGIVGLPGQRGERGFPGLPGPSGEPGKQGAPGASGDRGPPGPVGPPGLTGPA 1031

Query: 71   LSPGLSHLPAGQG 83
              PG    P   G
Sbjct: 1032 GEPGREGSPGADG 1044



 Score = 30.8 bits (68), Expect = 0.33
 Identities = 24/71 (33%), Positives = 31/71 (43%), Gaps = 8/71 (11%)

Query: 13   RGPAPVLGGQGLSGPCTRSGRLVPLAPGSEGL--STWASSCRGGTGSPSTAGLPALTTLE 70
            RGP   +G  GL+GP    GR    +PG++G      A+  +G  G     G P      
Sbjct: 1016 RGPPGPVGPPGLTGPAGEPGR--EGSPGADGPPGRDGAAGVKGDRGETGAVGAPGAPGPP 1073

Query: 71   LSPGLSHLPAG 81
             SPG    PAG
Sbjct: 1074 GSPG----PAG 1080



 Score = 28.9 bits (63), Expect = 1.3
 Identities = 23/73 (31%), Positives = 27/73 (36%), Gaps = 7/73 (9%)

Query: 13  RGPAPVLGGQGLSGPCTRSGRLVPLAPGSEGLS--TWASSCRGGTGSPSTAGLPALTTLE 70
           +G A   G  G  GP   SG     APG +G +  T     RG  G P   G P      
Sbjct: 851 QGEAGQKGDAGAPGPQGPSG-----APGPQGPTGVTGPKGARGAQGPPGATGFPGAAGRV 905

Query: 71  LSPGLSHLPAGQG 83
             PG +  P   G
Sbjct: 906 GPPGSNGNPGPPG 918



 Score = 28.5 bits (62), Expect = 1.6
 Identities = 24/66 (36%), Positives = 25/66 (37%), Gaps = 7/66 (10%)

Query: 2   EGEA-CAGTWVARGPAPVLGGQGLSGPCTRSGRLVPLAPGSEGLSTWASSCRGGTGSPST 60
           +GE   AG     GPA   G QG  GP    G   P  P  EG         G  G P  
Sbjct: 635 DGETGAAGPPGPAGPAGERGEQGAPGPSGFQGLPGPPGPPGEG------GKPGDQGVPGE 688

Query: 61  AGLPAL 66
           AG P L
Sbjct: 689 AGAPGL 694



 Score = 28.1 bits (61), Expect = 2.2
 Identities = 20/71 (28%), Positives = 25/71 (35%)

Query: 4   EACAGTWVARGPAPVLGGQGLSGPCTRSGRLVPLAPGSEGLSTWASSCRGGTGSPSTAGL 63
           E   G    RG    +G  G +G     G + P  P     +  A   RG TG P  AG 
Sbjct: 776 EGAPGKDGGRGLTGPIGPPGPAGANGEKGEVGPPGPAGSAGARGAPGERGETGPPGPAGF 835

Query: 64  PALTTLELSPG 74
                 +  PG
Sbjct: 836 AGPPGADGQPG 846



 Score = 28.1 bits (61), Expect = 2.2
 Identities = 22/75 (29%), Positives = 26/75 (34%), Gaps = 3/75 (4%)

Query: 12  ARGPAPVLGGQGLSG---PCTRSGRLVPLAPGSEGLSTWASSCRGGTGSPSTAGLPALTT 68
           A+GP    G  G +G   P   +G   P  P            RG +G P  AG P L  
Sbjct: 889 AQGPPGATGFPGAAGRVGPPGSNGNPGPPGPPGPSGKDGPKGARGDSGPPGRAGEPGLQG 948

Query: 69  LELSPGLSHLPAGQG 83
               PG    P   G
Sbjct: 949 PAGPPGEKGEPGDDG 963



 Score = 27.7 bits (60), Expect = 2.8
 Identities = 22/70 (31%), Positives = 23/70 (32%)

Query: 14   GPAPVLGGQGLSGPCTRSGRLVPLAPGSEGLSTWASSCRGGTGSPSTAGLPALTTLELSP 73
            GP    G QG SGP   SG   P  P        A+   G  G P   G    T     P
Sbjct: 1143 GPPGPSGDQGASGPAGPSGPRGPPGPVGPSGKDGANGIPGPIGPPGPRGRSGETGPAGPP 1202

Query: 74   GLSHLPAGQG 83
            G    P   G
Sbjct: 1203 GNPGPPGPPG 1212



 Score = 26.6 bits (57), Expect = 6.3
 Identities = 29/114 (25%), Positives = 37/114 (32%), Gaps = 7/114 (6%)

Query: 18  VLGGQGLSGPCTRSGRLVPLAPGSEGLSTWASSCRGGTGSPSTAGLPALTTLELSPGLSH 77
           ++G +G  GP   +G   P     +     A   RG  G P T G P        PG   
Sbjct: 115 IVGPKGPPGPQGPAGEQGPRGDRGDKGEKGAPGPRGRDGEPGTPGNPGPPGPPGPPG--- 171

Query: 78  LPAGQGSGLAACHA---QASLRWAPCEARASRMGASHCSTAPGPVHCPRAEEYR 128
            P G G   AA  A         A        MG       PGP   P  + ++
Sbjct: 172 -PPGLGGNFAAQMAGGFDEKAGGAQLGVMQGPMGPMGPRGPPGPAGAPGPQGFQ 224


>gi|111118974 collagen, type II, alpha 1 isoform 2 precursor [Homo
           sapiens]
          Length = 1418

 Score = 32.3 bits (72), Expect = 0.11
 Identities = 23/72 (31%), Positives = 27/72 (37%), Gaps = 8/72 (11%)

Query: 14  GPAPVLGGQGLSGPCTRSGRLVPL-APGSEGLSTWASSCRGGTGSPSTAGLPALTTLELS 72
           GP    GG G  G     G   P  A G EG        +G  G P T G P       +
Sbjct: 288 GPVGPAGGPGFPGAPGAKGEAGPTGARGPEG-------AQGPRGEPGTPGSPGPAGASGN 340

Query: 73  PGLSHLPAGQGS 84
           PG   +P  +GS
Sbjct: 341 PGTDGIPGAKGS 352



 Score = 32.3 bits (72), Expect = 0.11
 Identities = 22/70 (31%), Positives = 30/70 (42%), Gaps = 12/70 (17%)

Query: 14  GPAPVLGGQGLSGPCTRSGRLVPLAPGSEGLSTWASSCRGGTGSPSTAGLPALTTLELSP 73
           GP    G +G  GP     R  P  PGS G +       G +G+P T G+P       +P
Sbjct: 309 GPTGARGPEGAQGP-----RGEPGTPGSPGPA-------GASGNPGTDGIPGAKGSAGAP 356

Query: 74  GLSHLPAGQG 83
           G++  P   G
Sbjct: 357 GIAGAPGFPG 366



 Score = 31.2 bits (69), Expect = 0.25
 Identities = 24/78 (30%), Positives = 31/78 (39%), Gaps = 6/78 (7%)

Query: 12  ARGPAPVLGGQGLSGPCTRSGRLVPLAP----GSEGLS--TWASSCRGGTGSPSTAGLPA 65
           A+G A   G +G SG    +G   P+ P    G  G +    A+  RG  G P  AG P 
Sbjct: 229 AKGEAGAPGVKGESGSPGENGSPGPMGPRGLPGERGRTGPAGAAGARGNDGQPGPAGPPG 288

Query: 66  LTTLELSPGLSHLPAGQG 83
                  PG    P  +G
Sbjct: 289 PVGPAGGPGFPGAPGAKG 306



 Score = 31.2 bits (69), Expect = 0.25
 Identities = 23/73 (31%), Positives = 30/73 (41%), Gaps = 15/73 (20%)

Query: 12  ARGPAPVLGGQGLSGPCTRSGRLVPLAPGSEGLSTWASSCRGGTGSPSTAGLPALTTLEL 71
           A+GP    G  G  GP   SG      PG++G+       +G  G+P  AG P       
Sbjct: 319 AQGPRGEPGTPGSPGPAGASGN-----PGTDGIP----GAKGSAGAPGIAGAPGF----- 364

Query: 72  SPGLSHLPAGQGS 84
            PG    P  QG+
Sbjct: 365 -PGPRGPPGPQGA 376



 Score = 30.8 bits (68), Expect = 0.33
 Identities = 24/73 (32%), Positives = 27/73 (36%), Gaps = 3/73 (4%)

Query: 14  GPAPVLGGQGLSG-PCTRSGRLVPLAPGSEGL--STWASSCRGGTGSPSTAGLPALTTLE 70
           GP  + G +G+ G P  R  R  P  PG  G      A    G  G P   G P LT   
Sbjct: 903 GPQGLAGQRGIVGLPGQRGERGFPGLPGPSGEPGKQGAPGASGDRGPPGPVGPPGLTGPA 962

Query: 71  LSPGLSHLPAGQG 83
             PG    P   G
Sbjct: 963 GEPGREGSPGADG 975



 Score = 30.8 bits (68), Expect = 0.33
 Identities = 24/71 (33%), Positives = 31/71 (43%), Gaps = 8/71 (11%)

Query: 13   RGPAPVLGGQGLSGPCTRSGRLVPLAPGSEGL--STWASSCRGGTGSPSTAGLPALTTLE 70
            RGP   +G  GL+GP    GR    +PG++G      A+  +G  G     G P      
Sbjct: 947  RGPPGPVGPPGLTGPAGEPGR--EGSPGADGPPGRDGAAGVKGDRGETGAVGAPGAPGPP 1004

Query: 71   LSPGLSHLPAG 81
             SPG    PAG
Sbjct: 1005 GSPG----PAG 1011



 Score = 28.9 bits (63), Expect = 1.3
 Identities = 23/73 (31%), Positives = 27/73 (36%), Gaps = 7/73 (9%)

Query: 13  RGPAPVLGGQGLSGPCTRSGRLVPLAPGSEGLS--TWASSCRGGTGSPSTAGLPALTTLE 70
           +G A   G  G  GP   SG     APG +G +  T     RG  G P   G P      
Sbjct: 782 QGEAGQKGDAGAPGPQGPSG-----APGPQGPTGVTGPKGARGAQGPPGATGFPGAAGRV 836

Query: 71  LSPGLSHLPAGQG 83
             PG +  P   G
Sbjct: 837 GPPGSNGNPGPPG 849



 Score = 28.5 bits (62), Expect = 1.6
 Identities = 24/66 (36%), Positives = 25/66 (37%), Gaps = 7/66 (10%)

Query: 2   EGEA-CAGTWVARGPAPVLGGQGLSGPCTRSGRLVPLAPGSEGLSTWASSCRGGTGSPST 60
           +GE   AG     GPA   G QG  GP    G   P  P  EG         G  G P  
Sbjct: 566 DGETGAAGPPGPAGPAGERGEQGAPGPSGFQGLPGPPGPPGEG------GKPGDQGVPGE 619

Query: 61  AGLPAL 66
           AG P L
Sbjct: 620 AGAPGL 625



 Score = 28.1 bits (61), Expect = 2.2
 Identities = 20/71 (28%), Positives = 25/71 (35%)

Query: 4   EACAGTWVARGPAPVLGGQGLSGPCTRSGRLVPLAPGSEGLSTWASSCRGGTGSPSTAGL 63
           E   G    RG    +G  G +G     G + P  P     +  A   RG TG P  AG 
Sbjct: 707 EGAPGKDGGRGLTGPIGPPGPAGANGEKGEVGPPGPAGSAGARGAPGERGETGPPGPAGF 766

Query: 64  PALTTLELSPG 74
                 +  PG
Sbjct: 767 AGPPGADGQPG 777



 Score = 28.1 bits (61), Expect = 2.2
 Identities = 22/75 (29%), Positives = 26/75 (34%), Gaps = 3/75 (4%)

Query: 12  ARGPAPVLGGQGLSG---PCTRSGRLVPLAPGSEGLSTWASSCRGGTGSPSTAGLPALTT 68
           A+GP    G  G +G   P   +G   P  P            RG +G P  AG P L  
Sbjct: 820 AQGPPGATGFPGAAGRVGPPGSNGNPGPPGPPGPSGKDGPKGARGDSGPPGRAGEPGLQG 879

Query: 69  LELSPGLSHLPAGQG 83
               PG    P   G
Sbjct: 880 PAGPPGEKGEPGDDG 894



 Score = 27.7 bits (60), Expect = 2.8
 Identities = 22/70 (31%), Positives = 23/70 (32%)

Query: 14   GPAPVLGGQGLSGPCTRSGRLVPLAPGSEGLSTWASSCRGGTGSPSTAGLPALTTLELSP 73
            GP    G QG SGP   SG   P  P        A+   G  G P   G    T     P
Sbjct: 1074 GPPGPSGDQGASGPAGPSGPRGPPGPVGPSGKDGANGIPGPIGPPGPRGRSGETGPAGPP 1133

Query: 74   GLSHLPAGQG 83
            G    P   G
Sbjct: 1134 GNPGPPGPPG 1143



 Score = 26.6 bits (57), Expect = 6.3
 Identities = 29/114 (25%), Positives = 37/114 (32%), Gaps = 7/114 (6%)

Query: 18  VLGGQGLSGPCTRSGRLVPLAPGSEGLSTWASSCRGGTGSPSTAGLPALTTLELSPGLSH 77
           ++G +G  GP   +G   P     +     A   RG  G P T G P        PG   
Sbjct: 46  IVGPKGPPGPQGPAGEQGPRGDRGDKGEKGAPGPRGRDGEPGTPGNPGPPGPPGPPG--- 102

Query: 78  LPAGQGSGLAACHA---QASLRWAPCEARASRMGASHCSTAPGPVHCPRAEEYR 128
            P G G   AA  A         A        MG       PGP   P  + ++
Sbjct: 103 -PPGLGGNFAAQMAGGFDEKAGGAQLGVMQGPMGPMGPRGPPGPAGAPGPQGFQ 155


>gi|89276751 alpha 1 type V collagen preproprotein [Homo sapiens]
          Length = 1838

 Score = 32.3 bits (72), Expect = 0.11
 Identities = 26/74 (35%), Positives = 31/74 (41%), Gaps = 8/74 (10%)

Query: 14   GPAPVLGGQGLSGPCTRSGRL----VPLAPGSEGLSTWASSCRGGTGSPSTAGLPALTTL 69
            GP  V+G QG +G     G       P  PG +GL   A    G  G P  AGLP     
Sbjct: 994  GPPGVVGPQGPTGETGPMGERGHPGPPGPPGEQGLPGLAGK-EGTKGDPGPAGLPG---K 1049

Query: 70   ELSPGLSHLPAGQG 83
            +  PGL   P  +G
Sbjct: 1050 DGPPGLRGFPGDRG 1063



 Score = 27.3 bits (59), Expect = 3.7
 Identities = 25/79 (31%), Positives = 28/79 (35%), Gaps = 8/79 (10%)

Query: 14   GPAPVLGGQGLSGPCTRSGRL-------VPLAPGSEGLSTWASSCRGGTGSPSTAGLPAL 66
            GP   +G QGL GP    G          P  PG  G S  A    G  G P   G P  
Sbjct: 1222 GPPGPVGLQGLPGPPGEKGETGDVGQMGPPGPPGPRGPSG-APGADGPQGPPGGIGNPGA 1280

Query: 67   TTLELSPGLSHLPAGQGSG 85
               +  PG +  P   G G
Sbjct: 1281 VGEKGEPGEAGEPGLPGEG 1299


>gi|32964830 collagen, type VIII, alpha 2 [Homo sapiens]
          Length = 703

 Score = 32.3 bits (72), Expect = 0.11
 Identities = 28/89 (31%), Positives = 35/89 (39%), Gaps = 13/89 (14%)

Query: 13  RGPAPVLGGQGLSGPCTRSGRLVPLAPGSEGLSTWASSCRGG-------TGSPSTAGLPA 65
           RGP+ + G QG +GP    G  +P   G  GL       R G       TG P   G P 
Sbjct: 459 RGPSGIPGLQGPAGPIGPQG--LPGLKGEPGLPGPPGEGRAGEPGTAGPTGPPGVPGSPG 516

Query: 66  LTTLELSPGLSHLPAGQG----SGLAACH 90
           +T     PG    P   G    +G+A  H
Sbjct: 517 ITGPPGPPGPPGPPGAPGAFDETGIAGLH 545



 Score = 28.1 bits (61), Expect = 2.2
 Identities = 26/82 (31%), Positives = 32/82 (39%), Gaps = 20/82 (24%)

Query: 2   EGEACAGTWVARGPAPVLGGQGLSGPCTRSGRLVPLAPGSEGLSTWASSCRGGTGSPSTA 61
           +GEA  G     GP  V G +G  GP   +G+  P  PG  GL             P   
Sbjct: 378 KGEAGPG-----GPPGVPGIRGDQGPSGLAGK--PGVPGERGL-------------PGAH 417

Query: 62  GLPALTTLELSPGLSHLPAGQG 83
           G P  T  +  PG +  P G G
Sbjct: 418 GPPGPTGPKGEPGFTGRPGGPG 439


  Database: hs.faa
    Posted date:  Aug 4, 2009  4:42 PM
  Number of letters in database: 18,247,518
  Number of sequences in database:  37,866
  
Lambda     K      H
   0.315    0.132    0.444 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 7,253,847
Number of Sequences: 37866
Number of extensions: 414257
Number of successful extensions: 2477
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 58
Number of HSP's successfully gapped in prelim test: 198
Number of HSP's that attempted gapping in prelim test: 1831
Number of HSP's gapped (non-prelim): 800
length of query: 133
length of database: 18,247,518
effective HSP length: 91
effective length of query: 42
effective length of database: 14,801,712
effective search space: 621671904
effective search space used: 621671904
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 56 (26.2 bits)

Search results were obtained with NCBI BLAST and RefSeq entries.


Home | Table of Contents | Search text | Search genes | Search sequences | Purchase | FAQ | Blog | Help

Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

CSHL Press