Guide to the Human Genome
Home | Table of Contents | Search text | Search genes | Search sequences | Purchase | FAQ | Blog | Help
Name: LOC100289991 Sequence: fasta or formatted (140aa) NCBI GI: 239751991
Description:

PREDICTED: hypothetical protein XP_002348094

Not currently referenced in the text

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             4.3          6           3
 C cysteine            7.9         11           1
 D aspartate           1.4          2           1
 E glutamate           2.9          4           1
 F phenylalanine       1.4          2           1
 G glycine             4.3          6           2
 H histidine           6.4          9           1
 I isoleucine         14.3         20           1
 K lysine              2.1          3           1
 L leucine             2.1          3           1
 M methionine          5.0          7           1
 N asparagine          3.6          5           1
 P proline             3.6          5           1
 Q glutamine           2.9          4           1
 R arginine            7.1         10           2
 S serine              2.9          4           1
 T threonine           4.3          6           1
 V valine              5.7          8           1
 W tryptophan          1.4          2           1
 Y tyrosine           16.4         23           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   PREDICTED: hypothetical protein XP_002348094 
LOC100293402          0.973   PREDICTED: hypothetical protein 
LOC100133807          0.298   PREDICTED: similar to serine/threonine-protein kina...
LOC100132983          0.291   PREDICTED: hypothetical protein 
LOC100134353          0.288   PREDICTED: hypothetical protein 
LOC100134730          0.281   PREDICTED: hypothetical protein 
LOC100133226          0.281   PREDICTED: hypothetical protein 
LOC100128267          0.277   PREDICTED: hypothetical protein, partial 
LOC100134279          0.267   PREDICTED: hypothetical protein, partial 
LOC100293574          0.267   PREDICTED: hypothetical protein, partial 
LOC100134411          0.267   PREDICTED: hypothetical protein 
LOC100134060          0.264   PREDICTED: hypothetical protein 
LOC100133741          0.264   PREDICTED: hypothetical protein 
LOC100129825          0.264   PREDICTED: hypothetical protein 
LOC100133553          0.260   PREDICTED: hypothetical protein, partial 
LOC100132782          0.260   PREDICTED: hypothetical protein 
LOC100132016          0.260   PREDICTED: hypothetical protein 
LOC100131203          0.253   PREDICTED: hypothetical protein 
LOC100134332          0.253   PREDICTED: hypothetical protein, partial 
LOC100294466          0.253   PREDICTED: hypothetical protein, partial 
LOC100133450          0.253   PREDICTED: hypothetical protein, partial 
LOC100128473          0.253   PREDICTED: hypothetical protein 
LOC100287975          0.253   PREDICTED: hypothetical protein XP_002342501, parti...
LOC100289649          0.253   PREDICTED: hypothetical protein XP_002342367 
LOC100129642          0.253   PREDICTED: hypothetical protein 
LOC100132016          0.250   PREDICTED: hypothetical protein 
LOC100133975          0.250   PREDICTED: hypothetical protein, partial 
LOC100134395          0.247   PREDICTED: hypothetical protein, partial 
LOC100134576          0.247   PREDICTED: hypothetical protein 
LOC100131488          0.247   PREDICTED: hypothetical protein 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


Home | Table of Contents | Search text | Search genes | Search sequences | Purchase | FAQ | Blog | Help

Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

CSHL Press